RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1411
(270 letters)
>gnl|CDD|189476 pfam00261, Tropomyosin, Tropomyosin.
Length = 237
Score = 214 bits (548), Expect = 8e-70
Identities = 138/232 (59%), Positives = 187/232 (80%)
Query: 39 VEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAK 98
+E +LD ++ L++A + LEE EK AE+EVA+LNR++Q++EEDLE+SEER TA K
Sbjct: 6 LEEELDKAEERLEEAQEKLEEAEKRAEKAEAEVASLNRRIQLLEEDLERSEERLATALEK 65
Query: 99 LAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFV 158
L EA +AADE+ R KVLENRS +D+E+M+QL QLKEA+ +AE+AD K +EV+RKL V
Sbjct: 66 LEEAEKAADESERGRKVLENRSLKDDEKMEQLEAQLKEAKEIAEEADRKYEEVARKLVVV 125
Query: 159 EDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKL 218
E +LE AE+R ++ ++KI+ELEEELKVVGN+LKSLEVSEEKA+QR + Y+ +I+ L KL
Sbjct: 126 EGDLERAEERAEAAESKIVELEEELKVVGNNLKSLEVSEEKASQREDSYEEKIRDLTEKL 185
Query: 219 KEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
KEAE RAEFAE++V+KL+KEVDRLEDEL K++YK++++E+D T AEL GY
Sbjct: 186 KEAETRAEFAERSVQKLEKEVDRLEDELLAEKEKYKAISEELDQTLAELTGY 237
Score = 37.6 bits (88), Expect = 0.004
Identities = 36/147 (24%), Positives = 80/147 (54%)
Query: 114 KVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGD 173
K LE + EER+++ +L+EA AE A+A+ ++R++ +E++LE +E+R+ +
Sbjct: 4 KQLEEELDKAEERLEEAQEKLEEAEKRAEKAEAEVASLNRRIQLLEEDLERSEERLATAL 63
Query: 174 AKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVK 233
K+ E E+ K LE K ++++E+ + Q+K+ +EA+ + E + +
Sbjct: 64 EKLEEAEKAADESERGRKVLENRSLKDDEKMEQLEAQLKEAKEIAEEADRKYEEVARKLV 123
Query: 234 KLQKEVDRLEDELGLNKDRYKSLADEM 260
++ +++R E+ + + L +E+
Sbjct: 124 VVEGDLERAEERAEAAESKIVELEEEL 150
>gnl|CDD|205039 pfam12718, Tropomyosin_1, Tropomyosin like. This family is a set
of eukaryotic tropomyosins. Within the yeast Tmp1 and
Tmp2, biochemical and sequence analyses indicate that
Tpm2p spans four actin monomers along a filament,
whereas Tpmlp spans five. Despite its shorter length,
Tpm2p can compete with Tpm1p for binding to F-actin.
Over-expression of Tpm2p in vivo alters the axial
budding of haploids to a bipolar pattern, and this can
be partially suppressed by co-over-expression of Tpm1p.
This suggests distinct functions for the two
tropomyosins, and indicates that the ratio between them
is important for correct morphogenesis. The family also
contains higher eukaryote Tmp3 members.
Length = 143
Score = 74.2 bits (183), Expect = 2e-16
Identities = 45/142 (31%), Positives = 81/142 (57%), Gaps = 10/142 (7%)
Query: 7 KMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAA 66
KM A+K+E ++A ++A+ E + K+ + E ++ + +K Q +++E+ E+ L
Sbjct: 1 KMNALKLEAENAQERAEELEEKLKELEQENLEKEQEITSLQKKNQQLEEEVEKLEEQLKE 60
Query: 67 A----------ESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVL 116
A + AL R++Q++EE+LE+SE+R T KL EA + A+E+ R K L
Sbjct: 61 AKEKLEESEKLATNAEALTRRIQLLEEELEESEKRLKETTEKLREADKKAEESERKVKAL 120
Query: 117 ENRSQQDEERMDQLTNQLKEAR 138
EN + EE+ ++L + KEA+
Sbjct: 121 ENERDEWEEKYEELEKKYKEAK 142
Score = 27.2 bits (61), Expect = 6.5
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 18/161 (11%)
Query: 77 KVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKE 136
K+ ++ + E ++ER+ KL E Q E + L+ ++QQ EE +++L QLKE
Sbjct: 1 KMNALKLEAENAQERAEELEEKLKELEQENLEKEQEITSLQKKNQQLEEEVEKLEEQLKE 60
Query: 137 ARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVS 196
A+ E+++ + ++ +I LEEEL+ LK
Sbjct: 61 AKEKLEESEKLATNA------------------EALTRRIQLLEEELEESEKRLKETTEK 102
Query: 197 EEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQK 237
+A+++ EE +R++K L + E E + E EK K+ +K
Sbjct: 103 LREADKKAEESERKVKALENERDEWEEKYEELEKKYKEAKK 143
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 71.2 bits (175), Expect = 5e-14
Identities = 62/218 (28%), Positives = 116/218 (53%)
Query: 33 NLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERS 92
L+A+ E++L L++ ++LEE ++ L AE E+ L ++Q +EE LE+
Sbjct: 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV 276
Query: 93 GTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVS 152
++ E + LE + Q ER+ L QL+E E+ ++K DE++
Sbjct: 277 SELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336
Query: 153 RKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIK 212
+LA +E++LE ++ ++S +A++ ELE EL+ + + L+ LE E +V + + QI
Sbjct: 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396
Query: 213 QLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNK 250
L +++ EAR E E ++LQ+E++ L +L +
Sbjct: 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434
Score = 62.4 bits (152), Expect = 6e-11
Identities = 41/217 (18%), Positives = 106/217 (48%)
Query: 46 TKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQA 105
++ +++ + +EE E+ +A E +A L ++++ +EE+LE+ + + +++ +
Sbjct: 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
Query: 106 ADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVA 165
+ LE R Q + + +L +++E E+A+ + E ++ +E ++E
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794
Query: 166 EDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARA 225
++ +K+ + EL EL ++ +L E +R+ +R+++ L +++E
Sbjct: 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854
Query: 226 EFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDS 262
E +++L++ ++ LE EL + SL + +
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
Score = 53.9 bits (130), Expect = 4e-08
Identities = 50/262 (19%), Positives = 129/262 (49%), Gaps = 5/262 (1%)
Query: 6 KKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALA 65
+++ ++ E + ++ E + ++ ++E L+ + + + +++EE +K L
Sbjct: 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY 291
Query: 66 AAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEE 125
A +E++ L ++ Q++ E L E + A+L E DE LE + ++ +E
Sbjct: 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE 351
Query: 126 RMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKV 185
++ L +L+E E+ +++ +E+ +L + ++ E ++ S + +I LE L+
Sbjct: 352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411
Query: 186 VGNSLKSL-----EVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVD 240
+ + + L E+ ++ ++E + ++++L +L+E + E E+ +++L++E++
Sbjct: 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471
Query: 241 RLEDELGLNKDRYKSLADEMDS 262
E L + L +DS
Sbjct: 472 EAEQALDAAERELAQLQARLDS 493
Score = 50.1 bits (120), Expect = 6e-07
Identities = 50/255 (19%), Positives = 111/255 (43%), Gaps = 28/255 (10%)
Query: 26 EGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDL 85
E + + ++ +L+ ++ L+Q K+LEE + ++A ++A L +V+ +EE +
Sbjct: 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
Query: 86 EKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLK---------- 135
+ + A++ E + +EA E ++ E +++QL +LK
Sbjct: 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELR 809
Query: 136 -EARLLAEDADAKS-----------------DEVSRKLAFVEDELEVAEDRVKSGDAKIM 177
E LL E+A +++ ++ + +++E ++ + I
Sbjct: 810 AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE 869
Query: 178 ELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQK 237
ELE EL+ + N SLE + +EE ++++L K E E + + +L+
Sbjct: 870 ELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929
Query: 238 EVDRLEDELGLNKDR 252
++ LE + ++R
Sbjct: 930 RLEGLEVRIDNLQER 944
Score = 48.9 bits (117), Expect = 2e-06
Identities = 50/274 (18%), Positives = 130/274 (47%), Gaps = 12/274 (4%)
Query: 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEER 60
++ ++++++ + E + + E + ++ L ++E +++ +K L ++
Sbjct: 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRL 300
Query: 61 EKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRS 120
E+ +A L R+++ +E LE+ E + +LAE + +E + LE
Sbjct: 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
Query: 121 QQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELE 180
++ E +++L ++L+E E +K ++ ++A + +E+E E R++ + + L+
Sbjct: 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQ 420
Query: 181 EELKVVGNSLKSLEVSE------------EKANQRVEEYKRQIKQLAVKLKEAEARAEFA 228
+E++ + L+ E+ E E+ + +E + +++L +L+EAE + A
Sbjct: 421 QEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA 480
Query: 229 EKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDS 262
E+ + +LQ +D LE + + + + +
Sbjct: 481 ERELAQLQARLDSLERLQENLEGFSEGVKALLKN 514
Score = 44.7 bits (106), Expect = 3e-05
Identities = 35/171 (20%), Positives = 83/171 (48%), Gaps = 7/171 (4%)
Query: 97 AKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLA 156
++ E + +E LE + + +++L +L++ R E+ + + + LA
Sbjct: 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA 736
Query: 157 FVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAV 216
+E E+E E+R+ ++ ELE E ++ LE E+A + + E + +I++L
Sbjct: 737 RLEAEVEQLEERIAQLSKELTELEAE-------IEELEERLEEAEEELAEAEAEIEELEA 789
Query: 217 KLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAEL 267
++++ + + + + +L+ E+ L +E ++R +SL + +T L
Sbjct: 790 QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840
Score = 36.2 bits (84), Expect = 0.017
Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 8/160 (5%)
Query: 21 KADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQM 80
+ E + +D + +++ D+++ +++ + +EE E L A +E A+L + +
Sbjct: 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
Query: 81 IEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKE-ARL 139
+ +LE+ E +K +E + +E LE R + E R+D L +L E L
Sbjct: 892 LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL 951
Query: 140 LAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMEL 179
E+A+A ++ +ED+ E A R+K + KI EL
Sbjct: 952 TLEEAEALENK-------IEDDEEEARRRLKRLENKIKEL 984
Score = 35.8 bits (83), Expect = 0.025
Identities = 34/108 (31%), Positives = 57/108 (52%)
Query: 161 ELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKE 220
E+E E++++ + KI ELE+ L + L+ LE E+ + +EE RQI L L
Sbjct: 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR 737
Query: 221 AEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELA 268
EA E E+ + +L KE+ LE E+ ++R + +E+ AE+
Sbjct: 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785
Score = 27.7 bits (62), Expect = 8.4
Identities = 21/71 (29%), Positives = 42/71 (59%)
Query: 198 EKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLA 257
K N + E +R+I++L K++E E + EK + +L+KE++ LE+EL + + L+
Sbjct: 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725
Query: 258 DEMDSTFAELA 268
++ + +LA
Sbjct: 726 RQISALRKDLA 736
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 68.2 bits (167), Expect = 6e-13
Identities = 63/244 (25%), Positives = 125/244 (51%)
Query: 25 CEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEED 84
E + K +E L+ ++ L++ + LEE ++ LAA E E+ L +++ +EE+
Sbjct: 686 LEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEE 745
Query: 85 LEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDA 144
LE+ EE +L E + + L+ ++ EE+ L +L+E E+A
Sbjct: 746 LEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEA 805
Query: 145 DAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRV 204
+ + D + R+L +E E E ++ + +I ELEE+L + L+ LE E+ + +
Sbjct: 806 ERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEEL 865
Query: 205 EEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTF 264
EE + + ++L +LKE E E E+ +++L+ E+ L++E+ ++R + L +++
Sbjct: 866 EELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLE 925
Query: 265 AELA 268
EL
Sbjct: 926 VELP 929
Score = 62.4 bits (152), Expect = 5e-11
Identities = 54/245 (22%), Positives = 130/245 (53%)
Query: 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEER 60
+ +++ ++ ++ + + + + + + ++++ L+ ++ L++ ++LEE
Sbjct: 697 LRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEEL 756
Query: 61 EKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRS 120
++ L E E+ +L + ++E++E+ EE+ +L E + +EA R LE
Sbjct: 757 QERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALEREL 816
Query: 121 QQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELE 180
+ E+R ++L +++E E+ + K DE+ +L +E ELE ++ ++ +A+ ELE
Sbjct: 817 ESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELE 876
Query: 181 EELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVD 240
+ELK + + LE + + E K +I++L +L+E EA+ E E + +L++E++
Sbjct: 877 DELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELE 936
Query: 241 RLEDE 245
++
Sbjct: 937 EEYED 941
Score = 56.6 bits (137), Expect = 4e-09
Identities = 54/232 (23%), Positives = 117/232 (50%), Gaps = 3/232 (1%)
Query: 37 DKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTAT 96
++ +L+ ++ L + ++LEE ++ L AE E+ L +++ + E+LE+ +E
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELK 294
Query: 97 AKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLA 156
++ E + LEN ++ EER+++L +++ + E+ + +E+ + LA
Sbjct: 295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLA 354
Query: 157 FVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAV 216
+E+ E E++ A + ELEE + + L LE + +EE KR+I+ L
Sbjct: 355 ELEEAKEELEEK---LSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEE 411
Query: 217 KLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELA 268
+L+ R E ++ +K+L+ E++ L+ EL + + L ++++ L
Sbjct: 412 RLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLK 463
Score = 55.5 bits (134), Expect = 9e-09
Identities = 54/214 (25%), Positives = 119/214 (55%)
Query: 47 KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
K+ L + ++L E E L E E+ +L +++ +E+ LE+ + +L E +
Sbjct: 666 KRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKREL 725
Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
+ L++R ++ EE +++L +L+E + E+ + + + + LA +++E+E E
Sbjct: 726 AALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELE 785
Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
++ ++ ++ ELEEEL+ L +LE E QR E +++I++L +++E E + +
Sbjct: 786 EKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845
Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEM 260
E+ +++L+KE++ L++EL + + L DE+
Sbjct: 846 ELEEELEELEKELEELKEELEELEAEKEELEDEL 879
Score = 55.1 bits (133), Expect = 1e-08
Identities = 46/206 (22%), Positives = 111/206 (53%)
Query: 62 KALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQ 121
++ A + E+ L ++ +E LEK EE + +L +E R + LE + +
Sbjct: 660 RSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLE 719
Query: 122 QDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEE 181
+ + + L +L++ + E+ + + +E+ +L +++ LE E+ ++S + + +L+E
Sbjct: 720 ELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKE 779
Query: 182 ELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDR 241
E++ + ++L+ E+ + +EE +R++ L +L+ E R E E+ +++L++E++
Sbjct: 780 EIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE 839
Query: 242 LEDELGLNKDRYKSLADEMDSTFAEL 267
LE++L ++ + L E++ EL
Sbjct: 840 LEEKLDELEEELEELEKELEELKEEL 865
Score = 52.8 bits (127), Expect = 8e-08
Identities = 57/241 (23%), Positives = 117/241 (48%), Gaps = 7/241 (2%)
Query: 28 QAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEK 87
+ K+ ++E L+ ++ L +L E L ++ L R+++ ++ +L
Sbjct: 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAA 727
Query: 88 SEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAK 147
EE ++L E + +E + L+ R ++ EE ++ L L + + E+ + K
Sbjct: 728 LEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK 787
Query: 148 SDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEY 207
+ +L +E+ELE AE R + LE EL+ + + LE E+ + +EE
Sbjct: 788 RQALQEELEELEEELEEAERR-------LDALERELESLEQRRERLEQEIEELEEEIEEL 840
Query: 208 KRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAEL 267
+ ++ +L +L+E E E ++ +++L+ E + LEDEL ++ + L +E+ +EL
Sbjct: 841 EEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESEL 900
Query: 268 A 268
A
Sbjct: 901 A 901
Score = 51.3 bits (123), Expect = 3e-07
Identities = 54/260 (20%), Positives = 125/260 (48%), Gaps = 10/260 (3%)
Query: 3 AIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREK 62
++++++ ++ E + A + + + + ++ ++++ +L K+ +++ ++ +
Sbjct: 250 RLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRE 309
Query: 63 ALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQ 122
L E+E+ L +++ ++E +E +E L E Q E + LE +
Sbjct: 310 RLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSA 369
Query: 123 DEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEE 182
E +++L L+E + +A+ E+ +L ++ E+E E+R++ L E
Sbjct: 370 LLEELEELFEALREE---LAELEAELAEIRNELEELKREIESLEERLE-------RLSER 419
Query: 183 LKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRL 242
L+ + LK LE E+ +EE ++++L +L+E R + E+ + +LQ+E+ RL
Sbjct: 420 LEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRL 479
Query: 243 EDELGLNKDRYKSLADEMDS 262
E EL + R L E +
Sbjct: 480 EKELSSLEARLDRLEAEQRA 499
Score = 48.9 bits (117), Expect = 2e-06
Identities = 52/240 (21%), Positives = 114/240 (47%), Gaps = 10/240 (4%)
Query: 38 KVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSG---- 93
+ E L+ T++NL++ LEE EK L E + R Q ++ +L + E
Sbjct: 176 EAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAER-YQELKAELRELELALLLAKL 234
Query: 94 -TATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVS 152
+L E + + L+ ++ E+ +++L ++L+E R E+ + E+
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELK 294
Query: 153 RKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIK 212
++ +E E+ + +R++ + ++ ELEE L+ + +++L+ E+ +EE ++ +
Sbjct: 295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLA 354
Query: 213 QLAVKLKEAEARAEFA----EKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELA 268
+L +E E + E+ + L++E+ LE EL ++ + L E++S L
Sbjct: 355 ELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLE 414
Score = 44.3 bits (105), Expect = 4e-05
Identities = 44/264 (16%), Positives = 122/264 (46%), Gaps = 26/264 (9%)
Query: 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEER 60
+ +K++++ ++ ++ + ++ + E + ++A R D +E +L++ ++ ++ +++EE
Sbjct: 774 LAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEEL 833
Query: 61 EKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRS 120
E+ + E ++ L +++ +E++LE+ +E A+ E
Sbjct: 834 EEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEEL------------------ 875
Query: 121 QQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELE 180
E+ + +L + +E + +++ E+ ++ + + LE E +++ + ++ ELE
Sbjct: 876 ---EDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELE 932
Query: 181 EELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVD 240
EEL+ + E + + +E + +I+ L A E E+ ++L+ + +
Sbjct: 933 EELEEEY-----EDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQRE 987
Query: 241 RLEDELGLNKDRYKSLADEMDSTF 264
LE+ + + L E F
Sbjct: 988 DLEEAKEKLLEVIEELDKEKRERF 1011
Score = 41.6 bits (98), Expect = 3e-04
Identities = 42/213 (19%), Positives = 99/213 (46%), Gaps = 10/213 (4%)
Query: 55 KDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCK 114
+ EE E+ L E + L ++ +E+ LEK E +A +A +
Sbjct: 172 ERKEEAERKLERTEENLERLEDLLEELEKQLEKLER----------QAEKAERYQELKAE 221
Query: 115 VLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDA 174
+ E ++ +L +L+E + + +E+ +L E E+E + ++
Sbjct: 222 LRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELRE 281
Query: 175 KIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKK 234
++ EL+EEL + ++ LE +R+EE + ++++L +L+E + + E ++ +++
Sbjct: 282 ELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEE 341
Query: 235 LQKEVDRLEDELGLNKDRYKSLADEMDSTFAEL 267
+ ++ LE L ++ + L +++ + EL
Sbjct: 342 RETLLEELEQLLAELEEAKEELEEKLSALLEEL 374
Score = 40.9 bits (96), Expect = 6e-04
Identities = 53/245 (21%), Positives = 123/245 (50%), Gaps = 23/245 (9%)
Query: 4 IKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKA 63
++ +++ ++ E + ++ + + + ++ + +E L K+ +++ + + ++
Sbjct: 735 LQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEE 794
Query: 64 LAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQD 123
L E E+ R++ +E +LE E+R ++ E + +E LE
Sbjct: 795 LEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELE------ 848
Query: 124 EERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEEL 183
E +++L +L+E + E+ +A+ +E+ +L +E+E E ELEEEL
Sbjct: 849 -EELEELEKELEELKEELEELEAEKEELEDELKELEEEKE--------------ELEEEL 893
Query: 184 KVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARA--EFAEKTVKKLQKEVDR 241
+ + + L L+ EK +R+EE + ++++L V+L E E E+ + +L++E++R
Sbjct: 894 RELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIER 953
Query: 242 LEDEL 246
LE+E+
Sbjct: 954 LEEEI 958
Score = 37.4 bits (87), Expect = 0.007
Identities = 37/117 (31%), Positives = 71/117 (60%)
Query: 152 SRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQI 211
R + EL+ E+ + +A++ +LEEELK + N L+SLE E+ +++EE +RQ+
Sbjct: 659 KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718
Query: 212 KQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELA 268
++L +L E E + +++L++E++ LE+EL ++R + L +E++S LA
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775
Score = 34.3 bits (79), Expect = 0.061
Identities = 35/184 (19%), Positives = 81/184 (44%), Gaps = 3/184 (1%)
Query: 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEER 60
++A+K++++ + + E ++ + + +L+ + L ++L E
Sbjct: 332 IEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEAL---REELAEL 388
Query: 61 EKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRS 120
E LA +E+ L R+++ +EE LE+ ER +L E +E + L
Sbjct: 389 EAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEEL 448
Query: 121 QQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELE 180
++ EE++++L ++LKE + + + ++L+ +E L+ E ++ LE
Sbjct: 449 EELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLE 508
Query: 181 EELK 184
Sbjct: 509 ALES 512
Score = 31.2 bits (71), Expect = 0.67
Identities = 36/152 (23%), Positives = 72/152 (47%), Gaps = 25/152 (16%)
Query: 142 EDADAKSDEVSRKLAFVEDELEVAEDRVKS-------------------------GDAKI 176
E+A+ K + L +ED LE E +++ AK+
Sbjct: 175 EEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKL 234
Query: 177 MELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQ 236
EL +EL+ + L LE E+ + +EE +++I++L +L+E E ++ + +L+
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELK 294
Query: 237 KEVDRLEDELGLNKDRYKSLADEMDSTFAELA 268
+E++ LE E+ L ++R + L +E++ L
Sbjct: 295 EEIEELEGEISLLRERLEELENELEELEERLE 326
Score = 30.5 bits (69), Expect = 1.1
Identities = 26/106 (24%), Positives = 56/106 (52%)
Query: 165 AEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEAR 224
+ +K + ++ ELE +L+ + LKSL+ +EE +RQ+++L +L+E +
Sbjct: 665 QKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRE 724
Query: 225 AEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
E+ +++LQ ++ LE+EL ++ + L + ++ EL
Sbjct: 725 LAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESL 770
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 52.4 bits (126), Expect = 9e-08
Identities = 45/269 (16%), Positives = 124/269 (46%), Gaps = 23/269 (8%)
Query: 2 DAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEERE 61
+++ +++ ++ D + + + +++E + + K+ L++ +DL E
Sbjct: 691 SSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750
Query: 62 KALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQ 121
+ + +SE+ L +++ +EEDL K EE A+L+
Sbjct: 751 QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH-------------------- 790
Query: 122 QDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEE 181
R+ ++ +L + +A+ E+ +KL + E E E ++ + ++L+E
Sbjct: 791 ---SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE 847
Query: 182 ELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDR 241
++K + +++L +E+ + +EE + ++ L +L + + + E +++L+++++
Sbjct: 848 QIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE 907
Query: 242 LEDELGLNKDRYKSLADEMDSTFAELAGY 270
LE ++ + R L ++++ EL+
Sbjct: 908 LEAQIEKKRKRLSELKAKLEALEEELSEI 936
Score = 51.6 bits (124), Expect = 2e-07
Identities = 44/247 (17%), Positives = 107/247 (43%), Gaps = 14/247 (5%)
Query: 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEER 60
+K+K+ ++ E S E + +DA R K+E ++D +++ +++EE
Sbjct: 289 QLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEE 348
Query: 61 EKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRS 120
K E A L +++ + +LE+ ++ +L + + ++ R L+
Sbjct: 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408
Query: 121 QQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELE 180
+ +E + +L+ +L + +AK +E+ E+ + +I + E
Sbjct: 409 DRLQEELQRLSEELADLNAAIAGIEAKINEL--------------EEEKEDKALEIKKQE 454
Query: 181 EELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVD 240
+L+ + L E + + ++++ +L +L EAEA+A +E+ V+ + +
Sbjct: 455 WKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEE 514
Query: 241 RLEDELG 247
L+ +
Sbjct: 515 VLKASIQ 521
Score = 49.3 bits (118), Expect = 1e-06
Identities = 51/234 (21%), Positives = 105/234 (44%), Gaps = 16/234 (6%)
Query: 42 DLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAE 101
L+ K+ L +L E L E++ +RK+ IE+++E+ E+ +L E
Sbjct: 682 RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEE 741
Query: 102 A-------SQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRK 154
Q + K LE R ++ EE + +L + L A + ++ E+ +
Sbjct: 742 LEEDLSSLEQEIENVKSELKELEARIEELEEDLHKL--EEALNDLEARLSHSRIPEIQAE 799
Query: 155 LAFVEDELEVAEDRVKSGDAKIME-------LEEELKVVGNSLKSLEVSEEKANQRVEEY 207
L+ +E+E+ E R++ + K+ LE+E++ + L+ + + +E
Sbjct: 800 LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL 859
Query: 208 KRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMD 261
+ ++L +L+E EA E + L+KE D LE +L + + + L +++
Sbjct: 860 NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIE 913
Score = 46.6 bits (111), Expect = 8e-06
Identities = 44/239 (18%), Positives = 107/239 (44%), Gaps = 8/239 (3%)
Query: 38 KVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQ-MIEEDLEKSEERSGTAT 96
+E L + ++ L++ +++ E EK L E + LN+K++ + EE+ + +E+ G
Sbjct: 241 AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELE 300
Query: 97 AKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLA 156
A++A ++ E R + E R + E +D+L +++E E+ + D+++ + A
Sbjct: 301 AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYA 360
Query: 157 FVEDELEVAEDRVKSGDA-------KIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKR 209
+++ELE ++ D ++ + E+L+ + + L+ ++ + ++
Sbjct: 361 ELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSE 420
Query: 210 QIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELA 268
++ L + EA+ E+ + E+ + E +L E+ E
Sbjct: 421 ELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
Score = 46.2 bits (110), Expect = 1e-05
Identities = 56/257 (21%), Positives = 114/257 (44%), Gaps = 11/257 (4%)
Query: 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEER 60
+ +K+ ++ E + + + + + ++ +E +++ K L + +EE
Sbjct: 711 LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEL 770
Query: 61 EKALAAAESEVAALNR-----KVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKV 115
E+ L E + L ++ I+ +L K EE A+L E Q + +
Sbjct: 771 EEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY 830
Query: 116 LENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAK 175
LE Q+ +E+ L Q+K E+ + K +E+ +L +E L E R+ +
Sbjct: 831 LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE 890
Query: 176 IMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEF------AE 229
ELE +L+ + ++ LE EK +R+ E K +++ L +L E E E
Sbjct: 891 RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE 950
Query: 230 KTVKKLQKEVDRLEDEL 246
+++ +Q E+ R+E+E+
Sbjct: 951 LSLEDVQAELQRVEEEI 967
Score = 37.0 bits (86), Expect = 0.009
Identities = 37/209 (17%), Positives = 96/209 (45%), Gaps = 12/209 (5%)
Query: 65 AAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDE 124
+ +E+ L +++ ++ +L + +L E SQ +A+R +E +Q E
Sbjct: 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729
Query: 125 ERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEEL- 183
+ ++L +L+E + +++ V+ EL+ E R++ + + +LEE L
Sbjct: 730 QEEEKLKERLEELE-------EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALN 782
Query: 184 ----KVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEV 239
++ + + ++ K + V + +++++ KL E+ EK +++LQ++
Sbjct: 783 DLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR 842
Query: 240 DRLEDELGLNKDRYKSLADEMDSTFAELA 268
L++++ + ++L + + EL
Sbjct: 843 IDLKEQIKSIEKEIENLNGKKEELEEELE 871
Score = 37.0 bits (86), Expect = 0.010
Identities = 43/222 (19%), Positives = 102/222 (45%), Gaps = 14/222 (6%)
Query: 50 LDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEA 109
++A+++LEE E+ + + + ++++ + + EK+E R + E
Sbjct: 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAE-RYQALLKEKREYEG----- 225
Query: 110 NRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRV 169
L + E + + + QL E + E+ ++L +E LE ++
Sbjct: 226 ----YELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKI 281
Query: 170 KS-GDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFA 228
K G+ + + ++E++ + + SLE S + + +E+ + ++ +L ++ + A E
Sbjct: 282 KDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL 341
Query: 229 EKTVKKLQKEVDRLEDELGLNKDRYKSL---ADEMDSTFAEL 267
E+ +++ +K D+L +E K+ + L +E+D FAE
Sbjct: 342 EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET 383
Score = 36.2 bits (84), Expect = 0.018
Identities = 48/211 (22%), Positives = 95/211 (45%), Gaps = 6/211 (2%)
Query: 59 EREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLEN 118
E K A E + A+ R++ +EE+LEK E +L E Q +E N+ K L
Sbjct: 227 ELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDL-- 284
Query: 119 RSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIME 178
EE ++ ++ E + E R+L E+ L E + A+I E
Sbjct: 285 ----GEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEE 340
Query: 179 LEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKE 238
LE E++ L + + +E+ + +++++ + E + + ++KL++E
Sbjct: 341 LEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE 400
Query: 239 VDRLEDELGLNKDRYKSLADEMDSTFAELAG 269
++ L+ EL ++ + L++E+ A +AG
Sbjct: 401 INELKRELDRLQEELQRLSEELADLNAAIAG 431
Score = 27.7 bits (62), Expect = 8.5
Identities = 19/102 (18%), Positives = 48/102 (47%)
Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
+ G EL+ + L+ L+ + + ++ +L+ +L +A +
Sbjct: 660 RAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIG 719
Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELA 268
EK +++L++E ++L++ L ++ SL E+++ +EL
Sbjct: 720 EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK 761
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 48.9 bits (116), Expect = 1e-06
Identities = 38/206 (18%), Positives = 80/206 (38%), Gaps = 12/206 (5%)
Query: 43 LDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEA 102
LD + L +L + AAE+E A ++Q ++ E + A LA+A
Sbjct: 76 LDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKA 135
Query: 103 --------SQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRK 154
QA D R+ + E R +Q E + L K+ + A ++ ++ +
Sbjct: 136 QQELARLTKQAQDLQTRLKTLAEQR-RQLEAQAQSLQASQKQLQASATQLKSQVLDLKLR 194
Query: 155 LAFVEDELEVAEDR---VKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQI 211
A +E E + R ++ ++ + +++ + + Q++ QI
Sbjct: 195 SAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQI 254
Query: 212 KQLAVKLKEAEARAEFAEKTVKKLQK 237
++ +L+ E E+ V +L+
Sbjct: 255 RERERQLQRLETAQARLEQEVAQLEA 280
Score = 32.3 bits (73), Expect = 0.29
Identities = 16/93 (17%), Positives = 39/93 (41%)
Query: 174 AKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVK 233
++ L EL ++ E E A +++ +++ + + +L A A++ +
Sbjct: 81 PQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELA 140
Query: 234 KLQKEVDRLEDELGLNKDRYKSLADEMDSTFAE 266
+L K+ L+ L ++ + L + S A
Sbjct: 141 RLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQAS 173
Score = 28.8 bits (64), Expect = 3.4
Identities = 26/128 (20%), Positives = 49/128 (38%)
Query: 42 DLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAE 101
DL T K L + + LE + ++L A++ ++ A +++ DL+ + LA
Sbjct: 148 DLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLAT 207
Query: 102 ASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDE 161
+ AA +QQ + + Q Q+ + + E R+L +E
Sbjct: 208 RANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETA 267
Query: 162 LEVAEDRV 169
E V
Sbjct: 268 QARLEQEV 275
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 46.2 bits (110), Expect = 1e-05
Identities = 41/247 (16%), Positives = 88/247 (35%), Gaps = 31/247 (12%)
Query: 29 AKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKS 88
A L + + ++VK LE R L EV L ++ + LE+
Sbjct: 48 KLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFIL---PEEVEKLEAEL----KSLEEV 100
Query: 89 EERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKS 148
+ + ++++ E + + LE R + +E ++ L + L+E LA S
Sbjct: 101 IKPAEKFSSEVEELT----------RKLEERLSELDEELEDLEDLLEELEPLAYLDFDLS 150
Query: 149 DEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEE----LKVVGNSLKSLEVSEEKANQRV 204
K V + R + +A + +E+E + V S+ + + +V
Sbjct: 151 LLRGLKFLLVR----LGLVRREKLEALVGVIEDEVALYGENVEASVVIVVAHGAEDLDKV 206
Query: 205 EEYKRQ-----IKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADE 259
+ + + +E +E E+ + ++Q E++ L EL ++
Sbjct: 207 SKILNELGFELYEVPEFDGGPSELISE-LEEVIAEIQDELESLRSELEALAEKIAEELLA 265
Query: 260 MDSTFAE 266
+
Sbjct: 266 VREILEI 272
Score = 28.9 bits (65), Expect = 3.1
Identities = 21/109 (19%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 135 KEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLE 194
E L + ++ L+ + E+ VK + ++ L EE++ + LKSLE
Sbjct: 39 GEKGLKELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFILPEEVEKLEAELKSLE 98
Query: 195 VSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 243
+ E++ ++++L ++ E R ++ ++ L+ ++ LE
Sbjct: 99 EVI----KPAEKFSSEVEEL---TRKLEERLSELDEELEDLEDLLEELE 140
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 42.3 bits (100), Expect = 1e-04
Identities = 30/206 (14%), Positives = 89/206 (43%), Gaps = 9/206 (4%)
Query: 74 LNRKVQMIEEDLEKSEERSGTATAKLAEA-SQAADEANRMCKVLENRSQQDEE---RMDQ 129
+ ++++ +++E+ +++G A+ + +EA + +E + + ++
Sbjct: 193 IQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIED 252
Query: 130 LTNQLKEARLLAEDADAKSDEVSRKLAFVED--ELEVAEDRVKSGDAKIMELEEELKVVG 187
+ L + A +K ++ + + E ++ G +I +++++LK +
Sbjct: 253 PSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQ 312
Query: 188 NSLKSLEVSEEKANQRVEEYKRQ---IKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLED 244
+SL+ L+ + ++ + ++E+ Q + +L K+ + KK++ ++ L+
Sbjct: 313 HSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQA 372
Query: 245 ELGLNKDRYKSLADEMDSTFAELAGY 270
E N + L DE+D +
Sbjct: 373 EFVDNAEELAKLQDELDKIVKTKSEL 398
Score = 35.0 bits (81), Expect = 0.042
Identities = 34/204 (16%), Positives = 75/204 (36%), Gaps = 28/204 (13%)
Query: 20 DKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQ 79
+K D +AK +++ +L +++ L + A A +S++ + ++
Sbjct: 220 NKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIK 279
Query: 80 MIEE---------DLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQL 130
M E+ + + +R KL E + ++ L+ + EE MD+
Sbjct: 280 MYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEK-------LDTAIDELEEIMDEF 332
Query: 131 TNQLKEARLLAEDADAKSDEVSR---KLAFVEDELEVAEDRVKSGDAKIMELEEELKVVG 187
Q K+ L + K V+ +E + ++ +L++EL
Sbjct: 333 NEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELD--- 389
Query: 188 NSLKSLEVSEEKANQRVEEYKRQI 211
++ + K+ E+Y R I
Sbjct: 390 ------KIVKTKSELVKEKYHRGI 407
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 42.2 bits (100), Expect = 2e-04
Identities = 37/219 (16%), Positives = 83/219 (37%), Gaps = 30/219 (13%)
Query: 47 KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIE------EDLEKSEERSGTATAKLA 100
++ L++ K+++E E+ ++ E+E+ L ++++ +E DL + +
Sbjct: 92 EEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSL-LLGFKYVSVFVG 150
Query: 101 EASQAADEANRMCKVLENRSQQDEERMDQLTNQLKE-ARLLAEDADAKSDEVSRKLAFVE 159
+ LE + + + + K ++ SDEV +L +
Sbjct: 151 TVPED---------KLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLG 201
Query: 160 ------DELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQ 213
+E + ++ ++ E+E+E + + LK L + + EY +
Sbjct: 202 FERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELE 261
Query: 214 LA-VKLKEAEARAEFA------EKTVKKLQKEVDRLEDE 245
A K + FA E VKKL++ +D+
Sbjct: 262 RAEALSKFLKTDKTFAIEGWVPEDRVKKLKELIDKATGG 300
Score = 37.2 bits (87), Expect = 0.007
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 147 KSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEE 206
DEV L + + + + + + ++ +L L + +L L K N EE
Sbjct: 17 YKDEVLEALH-ELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREE 75
Query: 207 YKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMD 261
K+ V +K E + E+ ++K++KE+ LE+E+ ++ K L E++
Sbjct: 76 KKK------VSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIE 124
Score = 32.6 bits (75), Expect = 0.19
Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 46/190 (24%)
Query: 116 LENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLA-FVEDELEVAEDRVKSGDA 174
L + + E +D+L + L + L E+ S + +L VE+ELE E +K +
Sbjct: 48 LRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEE 107
Query: 175 KIMELEEELKVVGNSLKSLE------------------------VSEEKAN-------QR 203
+I ELE E+K + ++ LE V E+K
Sbjct: 108 EISELENEIKELEQEIERLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVE 167
Query: 204 VEEYKRQIKQ----LAVKLKEAE-------ARAEFAEKTV---KKLQKEVDRLEDELGLN 249
EY K + V LKE + F + + + +++EL
Sbjct: 168 NVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEI 227
Query: 250 KDRYKSLADE 259
+ +SL +E
Sbjct: 228 EKERESLLEE 237
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 40.9 bits (95), Expect = 5e-04
Identities = 57/233 (24%), Positives = 113/233 (48%), Gaps = 8/233 (3%)
Query: 5 KKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKAL 64
++K +A + +K KAD + +A++A +AD+ + + KK D A K EE +KA
Sbjct: 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAK-KADEAKKKAEEAKKKADAAKKKAEEAKKAA 1345
Query: 65 AAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDE 124
AA++E A + + EE E +E++ A K A + A+E + + ++++D+
Sbjct: 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK-KKADEAKKKAEEDK 1404
Query: 125 ERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELK 184
++ D+L A+ A++A K++E + DE + + K D + EE K
Sbjct: 1405 KKADELKKA-AAAKKKADEAKKKAEEKKKA-----DEAKKKAEEAKKADEAKKKAEEAKK 1458
Query: 185 VVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQK 237
K+ E + ++ E ++ + K +EA+ +A+ A+K + +K
Sbjct: 1459 AEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
Score = 37.8 bits (87), Expect = 0.006
Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 2/192 (1%)
Query: 54 VKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMC 113
V+ EE KA A ++E A + + EE + + + A K EA + A+EA +
Sbjct: 1187 VRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAE 1246
Query: 114 KVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGD 173
+ N + E ++A + AE+A + + DE + AE++ K+ +
Sbjct: 1247 EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADE 1306
Query: 174 AKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVK 233
AK + EE K + K E +++KA+ ++ + K EAEA A+ AE +
Sbjct: 1307 AK--KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
Query: 234 KLQKEVDRLEDE 245
K + + E+
Sbjct: 1365 KAEAAEKKKEEA 1376
Score = 37.0 bits (85), Expect = 0.009
Identities = 64/265 (24%), Positives = 124/265 (46%), Gaps = 16/265 (6%)
Query: 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEER 60
+A ++K +A + +K+ A KAD + +A++ +AD+ + + KK D+ K +
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK-KADEAKKKAEEDKKKADELKKAAAAK 1417
Query: 61 EKALAAAESEVAALNRKVQMIEEDLEKSEE-RSGTATAKLAEASQAADEANRMCKVLENR 119
+KA E + + +E +K+EE + K AE ++ A+EA + K E +
Sbjct: 1418 KKA-----DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK--KAEEAK 1470
Query: 120 SQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVE--DELEVAEDRVKSGDAKIM 177
+ ++ + + EA+ AE+A K+DE + + DE + AE+ K+ +AK
Sbjct: 1471 KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK-- 1528
Query: 178 ELEEELKVVGNSLKSLEVSEEKANQRVEEYKR--QIKQLAVKLKEAEARAEFAEKTVKKL 235
EE K + K+ E + ++ EE K+ + K+ K E + K +
Sbjct: 1529 -KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK 1587
Query: 236 QKEVDRLEDELGLNKDRYKSLADEM 260
+ E R+E+ + L ++ K A+E
Sbjct: 1588 KAEEARIEEVMKLYEEEKKMKAEEA 1612
Score = 32.0 bits (72), Expect = 0.36
Identities = 53/245 (21%), Positives = 104/245 (42%), Gaps = 5/245 (2%)
Query: 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEER 60
M ++ A+K E+ D+ E + K + + + D KK ++A K E +
Sbjct: 1262 MAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAK 1321
Query: 61 EKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRS 120
+KA A + AA + + + E A A AEA++ EA K +
Sbjct: 1322 KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAE--AAADEAEAAEEKAEAAEKKKEEAKKK 1379
Query: 121 QQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVE--DELEVAEDRVKSGDAKIME 178
++ + + EA+ AE+ K+DE+ + A + DE + + K D +
Sbjct: 1380 ADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKK 1439
Query: 179 LEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKE 238
EE K K+ E + + ++ E ++ + K +EA+ +A+ A+K ++ +K+
Sbjct: 1440 AEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK-KADEAKKKAEEAKKK 1498
Query: 239 VDRLE 243
D +
Sbjct: 1499 ADEAK 1503
Score = 30.5 bits (68), Expect = 1.1
Identities = 62/273 (22%), Positives = 121/273 (44%), Gaps = 21/273 (7%)
Query: 5 KKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKAL 64
KK +A K E+ D+A E + K L+ + E+ KK ++A K E++ AL
Sbjct: 1522 KKADEAKKAEEAKKADEAKKAEEKKKADELKKAE-ELKKAEEKKKAEEAKKAEEDKNMAL 1580
Query: 65 AAAESEVAALNRKVQMI-----EEDLEKSEERSGTATAKL-AEASQAADEANRMCKVLEN 118
AE A +++ + EE K+EE AK+ AE + A+E + + L+
Sbjct: 1581 RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
Query: 119 RSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIME 178
+ +++++ ++L +E ++ A + K++E +K +E + AE+ K + +
Sbjct: 1641 KEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK----AEEAKKAEEDEKKAAEALKK 1696
Query: 179 LEEELKVVGNSLKSLEVSEEKANQ----------RVEEYKRQIKQLAVKLKEAEARAEFA 228
EE K K ++KA + + EE K++ ++ K +EA+ E
Sbjct: 1697 EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK 1756
Query: 229 EKTVKKLQKEVDRLEDELGLNKDRYKSLADEMD 261
+K ++E + E+ + + DE D
Sbjct: 1757 KKIAHLKKEEEKKAEEIRKEKEAVIEEELDEED 1789
Score = 29.3 bits (65), Expect = 2.5
Identities = 58/242 (23%), Positives = 110/242 (45%), Gaps = 14/242 (5%)
Query: 6 KKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALA 65
KK + D A KA+ + +A +A A+ + + K + + ++ E+A
Sbjct: 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK 1535
Query: 66 AAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEE 125
A E++ A +K ++L+K+EE K AE ++ A+E M +++ EE
Sbjct: 1536 ADEAKKAEEKKKA----DELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE 1591
Query: 126 RMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKV 185
+ +L E + +AK E ++ A +EL+ AE+ K + + EE K
Sbjct: 1592 ARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA---EELKKAEEEKKKVEQLKKKEAEEKKK 1648
Query: 186 VGNSLKSLEVSEEKANQ---RVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRL 242
K+ E ++ KA + + EE K++ A + K+AE + A + +KK +E +
Sbjct: 1649 AEELKKAEEENKIKAAEEAKKAEEDKKK----AEEAKKAEEDEKKAAEALKKEAEEAKKA 1704
Query: 243 ED 244
E+
Sbjct: 1705 EE 1706
Score = 27.8 bits (61), Expect = 8.2
Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 9/206 (4%)
Query: 2 DAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEERE 61
+ KKK++ +K ++ KA+ + ++ ++A + + KK ++A K E+ +
Sbjct: 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688
Query: 62 KA---LAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLEN 118
KA L E + E+ +K+EE +A +A EA K E
Sbjct: 1689 KAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE- 1747
Query: 119 RSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAK--- 175
+++DEE ++ + KE AE+ + + V + EDE E K D
Sbjct: 1748 EAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNF 1807
Query: 176 --IMELEEELKVVGNSLKSLEVSEEK 199
I+E +E +V N K +E S K
Sbjct: 1808 ANIIEGGKEGNLVINDSKEMEDSAIK 1833
>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated.
Length = 343
Score = 40.3 bits (95), Expect = 6e-04
Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 7/133 (5%)
Query: 60 REKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENR 119
++ AL S++A L + + + + ++ A L+ A + L
Sbjct: 51 KDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGA 110
Query: 120 SQQDEERMDQLTNQLKEARLLAEDADAKSD-------EVSRKLAFVEDELEVAEDRVKSG 172
E R +L +L + ++ A A+ + + R+LA +E L+ +E R +
Sbjct: 111 GAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRES 170
Query: 173 DAKIMELEEELKV 185
AKI +L L V
Sbjct: 171 QAKIADLGRRLNV 183
Score = 29.2 bits (66), Expect = 2.1
Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 18/117 (15%)
Query: 124 EERMDQLTNQLKE-ARLLAEDADAKSDEVSRKLAFVEDELEVAE---DRVKSGDAKIMEL 179
+ +D+L +Q+ E A LL+ + D + +A + L AE R+++ A++
Sbjct: 52 DSALDRLNSQIAELADLLSLERQGNQD-LQDSVANLRASLSAAEAERSRLQALLAELAGA 110
Query: 180 EEELKVVGNSLKSLEVSEEKA------------NQRVEEYKRQIKQLAVKLKEAEAR 224
+ L E+ EK NQ++ +RQ+ L L +E R
Sbjct: 111 GAAAEGRAGELAQ-ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKR 166
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 39.6 bits (93), Expect = 0.001
Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 14/132 (10%)
Query: 124 EERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVE---------DELEVAEDRVKSGDA 174
+ ++ L L++ E K + S + D ++ + ++ +
Sbjct: 326 KALLEALEEILEKNLQKLE---EKLKDPSTSIELESITDLIESINDIIDAINELIREHNE 382
Query: 175 KIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKK 234
KI L++E L V+E K + ++ Y+++ K L + E + E +K
Sbjct: 383 KIDNLKKEKNKAKKKLWLHLVAELKED--IDAYQKEKKGLEKAINSLEKEIKQLEAEIKA 440
Query: 235 LQKEVDRLEDEL 246
L+KE+ LE +L
Sbjct: 441 LEKEIKELEKQL 452
Score = 30.7 bits (70), Expect = 0.77
Identities = 26/157 (16%), Positives = 66/157 (42%), Gaps = 8/157 (5%)
Query: 57 LEEREKALAAAESEVAALNRKVQMIEEDLE-KSEERSGT-----ATAKLAEASQAADEAN 110
E + + ++ + AL ++ + LE K ++ S + T + + D N
Sbjct: 315 NSEFKLDVEELKALLEALEEILEKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAIN 374
Query: 111 RMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVK 170
+ + + ++ ++ +L L + D ++ +E + E +K
Sbjct: 375 ELIREHNEKIDNLKKEKNKAKKKLW--LHLVAELKEDIDAYQKEKKGLEKAINSLEKEIK 432
Query: 171 SGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEY 207
+A+I LE+E+K + L ++E + ++ N+ ++ Y
Sbjct: 433 QLEAEIKALEKEIKELEKQLTNIEPTADEINKLLKAY 469
Score = 28.4 bits (64), Expect = 5.3
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 47 KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
K+++D K+ + EKA+ + E E+ L +++ +E+++++ E +L A
Sbjct: 407 KEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELE-------KQLTNIEPTA 459
Query: 107 DEANRMCKVL 116
DE N++ K
Sbjct: 460 DEINKLLKAY 469
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 39.6 bits (93), Expect = 0.001
Identities = 52/230 (22%), Positives = 108/230 (46%), Gaps = 7/230 (3%)
Query: 14 EKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAA 73
E D +++ + QA++ AD+V + + ++ L+ ++E+ + +A E E
Sbjct: 217 ELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREE 276
Query: 74 LNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQ---- 129
L +V+ + E LE+ EE A+ A+ + LE+R ++ +R+++
Sbjct: 277 LAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVA 336
Query: 130 ---LTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVV 186
+ + R A+D + +++E+ + A +E ELE A + V+ +I ELEEE++ +
Sbjct: 337 AQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL 396
Query: 187 GNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQ 236
V A +EE + + +L + E EA A + V++ +
Sbjct: 397 RERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAE 446
Score = 38.9 bits (91), Expect = 0.002
Identities = 58/284 (20%), Positives = 121/284 (42%), Gaps = 27/284 (9%)
Query: 2 DAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEERE 61
+A++ + + ++ + D+ + C A+ N A+ + D D ++ ++ ++ E E
Sbjct: 310 EAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELE 369
Query: 62 KALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQ 121
L A V +++ +EE++E+ ER G A L A +E L R
Sbjct: 370 SELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREA 429
Query: 122 QDEERMDQLTNQLKEARLL---------------------AEDADAKSDEVSRKLAFVED 160
+ E + +++EA L E+ + +E+ +L +E+
Sbjct: 430 ELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEE 489
Query: 161 ELEVAEDRV------KSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQL 214
E+E E+R+ + +I LEE + + + + E+ +R EE + + +L
Sbjct: 490 EVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAEL 549
Query: 215 AVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLAD 258
+ +E A AE+ ++ ++EV L +L K+R +SL
Sbjct: 550 EAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER 593
Score = 38.9 bits (91), Expect = 0.003
Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 9/213 (4%)
Query: 36 ADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTA 95
A+ VE + + ++ LEE A A E +L +EE E+ E +
Sbjct: 309 AEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAEL 368
Query: 96 TAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKL 155
++L EA +A ++ + LE ++ ER L A E+ + DE+ +
Sbjct: 369 ESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRERE 428
Query: 156 AFVEDELEVAEDRVKSGDAKIMELEEELKV--VGNSLKSLEVSE--EKANQRVEEYKRQI 211
A +E L A +RV+ + L E K G ++ E E+ +RVEE + ++
Sbjct: 429 AELEATLRTARERVEEAE----ALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAEL 484
Query: 212 KQLAVKLKEAEARAEFAEKTVKKLQKEVDRLED 244
+ L +++E E R E AE + + + ++RLE+
Sbjct: 485 EDLEEEVEEVEERLERAED-LVEAEDRIERLEE 516
Score = 38.5 bits (90), Expect = 0.003
Identities = 47/238 (19%), Positives = 112/238 (47%), Gaps = 5/238 (2%)
Query: 29 AKDANLRADKVEVDLDTTKKNLDQAVKDLEERE--KALAAAESEVAALNRKVQMIEEDLE 86
A DA L ++V D + L +++ EE++ + L ESE+A L+ +++ EE E
Sbjct: 171 ASDARLGVERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQRE 230
Query: 87 KSEERSGTATAKLAEASQAADEANRM---CKVLENRSQQDEERMDQLTNQLKEARLLAED 143
++ E A L E + +E + + L + E ++L ++++ R E+
Sbjct: 231 QARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE 290
Query: 144 ADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQR 203
+ + D++ + + + E E R + + + EL + L+ + ++ E +
Sbjct: 291 LEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLRED 350
Query: 204 VEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMD 261
++ + + ++L + E E+ E A + V+ ++E++ LE+E+ ++R+ ++
Sbjct: 351 ADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLG 408
Score = 34.2 bits (79), Expect = 0.066
Identities = 52/228 (22%), Positives = 104/228 (45%), Gaps = 21/228 (9%)
Query: 54 VKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMC 113
V+ +EE + + E+E+ L +V+ +EE LE++E+ L EA +
Sbjct: 467 VETIEEDRERVEELEAELEDLEEEVEEVEERLERAED--------LVEAEDRIERLEERR 518
Query: 114 KVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGD 173
+ LE + E +++ + +E R A + +A+++E A E+E E A + V +
Sbjct: 519 EDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578
Query: 174 AKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKE------------A 221
+K+ EL+E ++ + L + A +E + + + LA E
Sbjct: 579 SKLAELKERIESLERIRTLLAAIAD-AEDEIERLREKREALAELNDERRERLAEKRERKR 637
Query: 222 EARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAG 269
E AEF E +++ +++ +R E+ L +++ L +E D AE+
Sbjct: 638 ELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGA 685
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 37.6 bits (88), Expect = 0.005
Identities = 65/235 (27%), Positives = 106/235 (45%), Gaps = 34/235 (14%)
Query: 48 KNLDQAVKDLEEREKALAA----AESEVAALNRKVQMIEEDLEKSEERSGTA-TAKLAEA 102
K + ++DL+E+E+ A + ++ L ED E EER + + KLAEA
Sbjct: 167 KQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEA 226
Query: 103 SQAADEA--------------NRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKS 148
Q A E R + LE+ S+ D ++ +L L+EA E+A +
Sbjct: 227 IQNALELLSGEDDTVSALSLLGRALEALEDLSEYDG-KLSELAELLEEALYELEEASEEL 285
Query: 149 DEVSRKLAFVEDELEVAEDRV--------KSGDAKIMELEEELKVVGNSLKSLEVSEEKA 200
+L F + LE E+R+ K G I +L E L + L L+ SEE
Sbjct: 286 RAYLDELEFDPNRLEEVEERLFALKSLARKYG-VTIEDLLEYLDKIKEELAQLDNSEES- 343
Query: 201 NQRVEEYKRQIKQLAVKL-KEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYK 254
+E ++++K+L +L + AEA + +K K+L+KEV L + K R+
Sbjct: 344 ---LEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVTAELKALAMEKARFT 395
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 37.5 bits (88), Expect = 0.007
Identities = 45/235 (19%), Positives = 87/235 (37%), Gaps = 57/235 (24%)
Query: 54 VKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMC 113
+++L + A E + ++ +++ E+ EE + S AADE+
Sbjct: 166 LRELIDGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDEN-------DDSLAADESELPE 218
Query: 114 KVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGD 173
KVLE + L Q K+ R E +K A + ++L
Sbjct: 219 KVLE--------KFKALAKQYKKLRKAQEKKVEGRLAQHKKYAKLREKL----------- 259
Query: 174 AKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLK-------------- 219
E + L++ + L N+RV +R++ +L +LK
Sbjct: 260 ---KEELKSLRLTSKQIDELVEQLRDINKRVRGQERELLRLVERLKMPRKDFLKLFQGNE 316
Query: 220 -----------EAEARAEFAEKT---VKKLQKEVDRLEDELGLNKDRYKSLADEM 260
+ +EF + +KKLQ+E++ +E+E GL + K + ++
Sbjct: 317 LDITWLEKEIASGKPWSEFLVRVYDEIKKLQQELEAIEEETGLTIEELKEINRQI 371
>gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA. During
the bacterial cell cycle, the tubulin-like cell-division
protein FtsZ polymerises into a ring structure that
establishes the location of the nascent division site.
EzrA modulates the frequency and position of FtsZ ring
formation.
Length = 559
Score = 36.0 bits (84), Expect = 0.020
Identities = 41/185 (22%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Query: 37 DKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTAT 96
+E +L K+ +DQ + LEE + L AE E + ++ + + LEK +
Sbjct: 248 LDIEKELQDLKEQIDQNLALLEELD--LDEAEEENEEIEERIDTLYDILEKEVKAKKFVE 305
Query: 97 AKLAEASQAADEANRMCKVLEN---RSQQ-------DEERMDQLTNQLKEARLLAEDADA 146
+ + + + A K L R QQ + E + +L QL+E +
Sbjct: 306 KNIDKLTDFLEHAREQNKQLLLELDRLQQSYTLNEDELETVRELEKQLEELEAQYDQLVE 365
Query: 147 KSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEE 206
+ E + +++ELE E +++ E+E+E + + SL+ L E +A ++++E
Sbjct: 366 RIAEKKVAYSELQEELEEIEKQLE-------EIEKEQEELSESLQGLRKDELEAREKLQE 418
Query: 207 YKRQI 211
Y++++
Sbjct: 419 YRQKL 423
>gnl|CDD|217667 pfam03666, NPR3, Nitrogen Permease regulator of amino acid
transport activity 3. This family, also known in yeasts
as Rmd11, complexes with NPR2, pfam06218. This complex
heterodimer is responsible for inactivating TORC1. an
evolutionarily conserved protein complex that controls
cell size via nutritional input signals, specifically,
in response to amino acid starvation.
Length = 424
Score = 35.8 bits (83), Expect = 0.020
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 200 ANQRVEE-YKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLAD 258
N RV+E Y IK+L++ LK + ++++ K KK+ L++++ + +SL +
Sbjct: 120 YNYRVDEMYHHVIKKLSLALKYEQQKSDYVWKECKKILA----LKEKVREQSQKLESLYE 175
Query: 259 EMDST 263
E+ S
Sbjct: 176 EILSK 180
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 35.4 bits (82), Expect = 0.026
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 149 DEVSRKLAFVEDELEVAEDRVKSGDAK--IMELEEELKVVGNSLKSLEVSEEKANQRVEE 206
DEV RKL +E +++ +K K + +E L + L +E VEE
Sbjct: 34 DEVERKLRKLESKIKKLGIPLKDTGGKPDVPPSKEFLDLEEEILDLEAEIKE-----VEE 88
Query: 207 YKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKD 251
++ ++ E E ++ L + ++ L + L+ D
Sbjct: 89 NLESLE---KEINELEEWLNVLDEEKSFLDENLEELSELSNLDID 130
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 35.7 bits (83), Expect = 0.027
Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 29/194 (14%)
Query: 35 RADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGT 94
+ D+ + + + K+ L QA L + + L A + + R+ + L + E R
Sbjct: 74 KIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRE-TLSTLSLRQLESRLAQ 132
Query: 95 ATAKLAEASQAADEANRMCKVLENRSQQ-------DEERMDQLTNQLKE----------- 136
+L A E N L+ + ++ + +R+ Q+ N LK
Sbjct: 133 TLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPS 192
Query: 137 --ARLLAEDA--DAKSDEVSRKLAFVEDEL-EVAEDRVKSGDAKIMELEEELKV---VGN 188
L AE A +A++D + RK +L ++ + + A+I LE +L++ N
Sbjct: 193 QRVLLQAEQALLNAQND-LQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAIN 251
Query: 189 SLKSLEVSEEKANQ 202
S K L +SE+ +
Sbjct: 252 S-KRLTLSEKTVQE 264
Score = 32.2 bits (74), Expect = 0.34
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 36 ADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTA 95
V+ LD K K LE +K + + AL K+ +E+ E+ +++ A
Sbjct: 38 EADVQAQLDALNKQ-----KLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQA 92
Query: 96 TAKLAEASQA-----ADEANRMCKVLENRSQQD-EERMDQLTNQLKEAR 138
AKL +A D + L S + E R+ Q +QL+ A+
Sbjct: 93 PAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQ 141
Score = 27.6 bits (62), Expect = 9.4
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 16/90 (17%)
Query: 174 AKIMELEEELKVVGNSL-KSLEVSE--EKANQRVEEYKRQIKQLAVKLKEA--------- 221
K LE E K+V L ++L + + ++ + E+ K+Q+ Q KL++A
Sbjct: 49 NKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKD 108
Query: 222 ----EARAEFAEKTVKKLQKEVDRLEDELG 247
E R + ++++L+ + + D+L
Sbjct: 109 DNDEETRETLSTLSLRQLESRLAQTLDQLQ 138
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 34.8 bits (81), Expect = 0.038
Identities = 16/45 (35%), Positives = 30/45 (66%)
Query: 198 EKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRL 242
E +R E + QI+QL +KL++ EA E E+ +++L+ E+++L
Sbjct: 4 EALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKL 48
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form. The
Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC
2.A.36) The CPA1 family is a large family of proteins
derived from Gram-positive and Gram-negative bacteria,
blue green bacteria, yeast, plants and animals.
Transporters from eukaryotes have been functionally
characterized, and all of these catalyze Na+:H+
exchange. Their primary physiological functions may be
in (1) cytoplasmic pH regulation, extruding the H+
generated during metabolism, and (2) salt tolerance (in
plants), due to Na+ uptake into vacuoles. This model is
specific for the bacterial members of this family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 525
Score = 34.9 bits (80), Expect = 0.044
Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 126 RMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKV 185
+ + + + E + A A+S + + L ++L + E + ++ EEL+
Sbjct: 408 FVSEHSERELEEII-ARYIAARSAKFA--LMKAVEQLRIVEPVARELLPELDARIEELRA 464
Query: 186 VGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDE 245
G + E+ +R Y K+ AV + A +++ + +L +E+D E E
Sbjct: 465 DGEEKIRSGMGEKNLRRRARLYVLDAKRSAV--VDLRAGGLISQEVLLELMRELDLKEAE 522
Query: 246 L 246
L
Sbjct: 523 L 523
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 34.3 bits (79), Expect = 0.071
Identities = 56/256 (21%), Positives = 106/256 (41%), Gaps = 19/256 (7%)
Query: 6 KKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEER-EKAL 64
+K+Q + S + G+ R + + + K L Q ++ LE++ ++A
Sbjct: 249 EKLQEDFEQLLSLELRLQHLHGELVADEERLAEEQEERQEAKNRLRQQLRTLEDQLKEAR 308
Query: 65 AAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQA-----------ADEANRMC 113
E++A N K+ +LE E++ G E QA +E
Sbjct: 309 DELNQELSAANAKLAADRSELELLEDQKGAFEDADIEQLQADLDQLPSIRSELEEVEARL 368
Query: 114 KVLENRSQQDEERMDQLTNQLKEARLLA-----EDADAKSDEVSRKLAFVEDELEVAEDR 168
L + Q + + ++L ++KE E A +E R+ A +E++L+ E +
Sbjct: 369 DALTGKHQDVQRKYERLKQKIKEQLERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQ 428
Query: 169 -VKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEF 227
+ +A +E EE + L L+ + A EE Q++ L++A+ E
Sbjct: 429 LRQQLEAGKLEFNEEEYELELRLGRLKQRLDSATATPEE-LEQLEINDEALEKAQEEQEQ 487
Query: 228 AEKTVKKLQKEVDRLE 243
AE V++LQ E+ +L
Sbjct: 488 AEANVEQLQSELRQLR 503
Score = 31.2 bits (71), Expect = 0.73
Identities = 53/290 (18%), Positives = 111/290 (38%), Gaps = 56/290 (19%)
Query: 26 EGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDL 85
E + N ++E+ L K+ LD A EE E ++ + ++ +E+
Sbjct: 434 EAGKLEFNEEEYELELRLGRLKQRLDSATATPEELE--------QLEINDEALEKAQEEQ 485
Query: 86 EKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQL----------- 134
E++E ++L + + DEA + E R Q + +D+L QL
Sbjct: 486 EQAEANVEQLQSELRQLRKRRDEALEALQRAERRLLQLRQALDELELQLSPQAGSLLHFL 545
Query: 135 ---------------KEARLLAEDADAKSDEVSRK-----------------LAFVEDEL 162
L D D + E S A E EL
Sbjct: 546 RNEAPGWEESIGKVISPELLERTDLDPQLVEGSDSDTLYGVSLDLQRLDVPDYAANETEL 605
Query: 163 E----VAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKL 218
AE+ ++S AK + EE+L L+ + +E +A +++ + +++L +
Sbjct: 606 RERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQ 665
Query: 219 KEAEARAEFA-EKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAEL 267
+ + + E A + ++ + ++ +L+ +L ++ ++ + + F EL
Sbjct: 666 QSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFREL 715
Score = 30.0 bits (68), Expect = 1.8
Identities = 40/254 (15%), Positives = 85/254 (33%), Gaps = 24/254 (9%)
Query: 2 DAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLE--- 58
+++++Q + SA+ K E Q AN ++ + + L QA DL+
Sbjct: 603 TELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQ 662
Query: 59 -----EREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMC 113
++K A +++ ++ L++ E A +
Sbjct: 663 NEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLE--QQQAFLEALKDDFRELRTER- 719
Query: 114 KVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGD 173
L + E +QL A A+ E+ ++ L+V + VK
Sbjct: 720 --LAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLDVDPNTVKELK 777
Query: 174 AKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVK 233
+I ELE ++ + V EY+ +++ + ++
Sbjct: 778 RQIEELETTIERI-----------AVRRPEVREYRAFMQETWLHRDSLREERPNLAIQLR 826
Query: 234 KLQKEVDRLEDELG 247
+L+ + L+ EL
Sbjct: 827 ELESSAEELQQELT 840
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 34.0 bits (78), Expect = 0.075
Identities = 47/213 (22%), Positives = 110/213 (51%), Gaps = 7/213 (3%)
Query: 35 RADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGT 94
R ++++ L + +A+K EE + L E+ +++ +E ++E+ EE
Sbjct: 250 RLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEG 309
Query: 95 ATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRK 154
A L E + ++ K LE R ++ EE++++L ++L+E LAE+ + + + +
Sbjct: 310 LRALLEELEELLEKL----KSLEERLEKLEEKLEKLESELEE---LAEEKNELAKLLEER 362
Query: 155 LAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQL 214
L +E+ LE E ++ ++ +LEE ++ + L L + E+ + +EE ++++++L
Sbjct: 363 LKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEEL 422
Query: 215 AVKLKEAEARAEFAEKTVKKLQKEVDRLEDELG 247
+L+E E + E+ + +L+ + + + G
Sbjct: 423 ERELEELEEEIKKLEEQINQLESKELMIAELAG 455
Score = 32.0 bits (73), Expect = 0.36
Identities = 49/218 (22%), Positives = 97/218 (44%), Gaps = 12/218 (5%)
Query: 30 KDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSE 89
K NL + E+ + L + ++ LE+R + L E+ L + + +EE E+ +
Sbjct: 537 KLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLK 596
Query: 90 ERSGT-ATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKS 148
E + + + EN ++ EE ++ +L L E A
Sbjct: 597 ELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAAL 656
Query: 149 DEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYK 208
+E+ K+ +E E+ R+++ EE+L+ L+ LE E+ + +EE
Sbjct: 657 EELEEKVEELEAEIRRELQRIEN--------EEQLEEKLEELEQLEEELEQLREELEELL 708
Query: 209 RQ---IKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE 243
++ I+QL +L+ +A E +K ++KL+K ++ LE
Sbjct: 709 KKLGEIEQLIEELESRKAELEELKKELEKLEKALELLE 746
Score = 28.2 bits (63), Expect = 6.1
Identities = 40/181 (22%), Positives = 82/181 (45%), Gaps = 7/181 (3%)
Query: 50 LDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEA 109
L++ ++ LEE E+ + E E+ L ++ +EE LEK + + + E
Sbjct: 286 LEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESEL 345
Query: 110 NRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRV 169
+ + ++ EER+ +L +L+E E A + + +E+ ++ ++ +
Sbjct: 346 EELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQ-------LEEAIQELKEEL 398
Query: 170 KSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAE 229
A + E++EEL+ + L+ LE E+ + +++ + QI QL K A E
Sbjct: 399 AELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGE 458
Query: 230 K 230
K
Sbjct: 459 K 459
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 32.7 bits (75), Expect = 0.11
Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 151 VSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQ 210
+L ++ EL ++ + ++ EL++E + + L +LE E+ + +
Sbjct: 64 ARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELAR---- 119
Query: 211 IKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDEL 246
IKQL+ E + + + +L++E + LE E
Sbjct: 120 IKQLSANAIELDEENRELREELAELKQENEALEAEN 155
Score = 27.3 bits (61), Expect = 6.3
Identities = 15/98 (15%), Positives = 43/98 (43%)
Query: 57 LEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVL 116
L E ++ LA + E+A L ++ ++++ ++ ++ T A+L + ++
Sbjct: 68 LPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANA 127
Query: 117 ENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRK 154
+++ E ++L +E L + + + R+
Sbjct: 128 IELDEENRELREELAELKQENEALEAENERLQENEQRR 165
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 33.5 bits (77), Expect = 0.11
Identities = 43/210 (20%), Positives = 84/210 (40%), Gaps = 9/210 (4%)
Query: 48 KNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAAD 107
K L Q K++ EK + + + A L ++++ +E ++ E + L + +
Sbjct: 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA 97
Query: 108 EANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAED 167
+ N LE Q+ E+ +L QL + + VS + A L +
Sbjct: 98 DLNARLNALE---VQEREQRRRLAEQLAALQRSGRNPPPA-LLVSPEDAQRSVRLAIYYG 153
Query: 168 RVKSGDAK-IMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
+ A+ I L+ LK + + + + + E + Q +LA L+E R +
Sbjct: 154 ALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEE---RKK 210
Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSL 256
+ +L + +LE EL N+ R K+
Sbjct: 211 TLAQLNSELSADQKKLE-ELRANESRLKNE 239
Score = 32.0 bits (73), Expect = 0.28
Identities = 35/214 (16%), Positives = 68/214 (31%), Gaps = 18/214 (8%)
Query: 43 LDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEA 102
+K L ++ E L ++ L +++ + L E + +LAE
Sbjct: 61 RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQ 120
Query: 103 SQA------------------ADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDA 144
A A + R+ + ER+D L LK+ + +
Sbjct: 121 LAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEI 180
Query: 145 DAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRV 204
A+ E++ L+ + ++ + +L EL L+ L +E + +
Sbjct: 181 AAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEI 240
Query: 205 EEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKE 238
+ + AEA A A K E
Sbjct: 241 ASAEAAAAKAREAAAAAEAAAARARAAEAKRTGE 274
Score = 31.6 bits (72), Expect = 0.38
Identities = 12/87 (13%), Positives = 32/87 (36%)
Query: 152 SRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQI 211
S + + ++K +I LE++++ + LE + + + Q+
Sbjct: 23 SAAVLAAAFSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQL 82
Query: 212 KQLAVKLKEAEARAEFAEKTVKKLQKE 238
+ A LK+ + + L+ +
Sbjct: 83 IETADDLKKLRKQIADLNARLNALEVQ 109
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 32.4 bits (74), Expect = 0.12
Identities = 22/128 (17%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 119 RSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIME 178
Q Q + + + + E+ +L +E+ + E ++ +
Sbjct: 64 APVQSVRPQKLEELQGELS-----ELKQQLSELQEELEDLEERIAELESELEDLKEDLQL 118
Query: 179 LEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKE 238
L E LK + L+SLE S ++ + + E ++ +++ +L+E R + + +++ +E
Sbjct: 119 LRELLKSLEERLESLEESIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQE 178
Query: 239 VDRLEDEL 246
+ L ++L
Sbjct: 179 LQSLLEQL 186
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 33.1 bits (76), Expect = 0.15
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 191 KSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNK 250
K+ E S EK ++++ K Q+K+L + E ++ K K +++ ++L+ E+ K
Sbjct: 273 KTHEKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKK 332
Query: 251 DRYKS 255
K
Sbjct: 333 KEKKK 337
Score = 32.7 bits (75), Expect = 0.18
Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 35/164 (21%)
Query: 82 EEDLEKSEERSGTATAKLAEASQAADEANRMCKVLEN--RS---------QQDEERMDQL 130
+E L++ + G K+ A + ANR +L N R+ ++ +E++ L
Sbjct: 234 QEQLKELTAKDGNVAEKIL----AYNRANREVAILCNHQRTVSKTHEKSMEKLQEKIKAL 289
Query: 131 TNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSG-DAKIMELEEELKVVGNS 189
QLK + + + SD + +L+ +R DA++ E ++E K
Sbjct: 290 KYQLKRLKKMILLFEMISDL--------KRKLKSKFERDNEKLDAEVKEKKKEKKK---- 337
Query: 190 LKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVK 233
EEK +++E + +I++L V+ + E A T K
Sbjct: 338 -------EEKKKKQIERLEERIEKLEVQATDKEENKTVALGTSK 374
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA;
Provisional.
Length = 569
Score = 32.9 bits (76), Expect = 0.15
Identities = 33/187 (17%), Positives = 80/187 (42%), Gaps = 23/187 (12%)
Query: 37 DKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTAT 96
+E ++ K+ +D+ + LEE + L AE + + ++ + + LE+ +
Sbjct: 252 LDIEKEIQDLKEQIDENLALLEELD--LDEAEEKNEEIQERIDQLYDILEREVKARKYVE 309
Query: 97 AKLAEASQAADEANRMCKVLENRSQQ----------DEERMDQLTNQLKEARLLAEDADA 146
+ A K L+ + + E + QL QL+ ++
Sbjct: 310 KNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITE 369
Query: 147 KSDEVSRKLAF--VEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRV 204
+ E +++A+ +++ELE +++ E+E+E + + L+ L E +A +++
Sbjct: 370 RIAE--QEIAYSELQEELEEILKQLE-------EIEKEQEKLSEMLQGLRKDELEAREKL 420
Query: 205 EEYKRQI 211
E Y+ ++
Sbjct: 421 ERYRNKL 427
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain
(CALCOCO1) like. Proteins found in this family are
similar to the coiled-coil transcriptional coactivator
protein coexpressed by Mus musculus (CoCoA/CALCOCO1).
This protein binds to a highly conserved N-terminal
domain of p160 coactivators, such as GRIP1, and thus
enhances transcriptional activation by a number of
nuclear receptors. CALCOCO1 has a central coiled-coil
region with three leucine zipper motifs, which is
required for its interaction with GRIP1 and may regulate
the autonomous transcriptional activation activity of
the C-terminal region.
Length = 546
Score = 33.0 bits (75), Expect = 0.16
Identities = 50/245 (20%), Positives = 109/245 (44%), Gaps = 20/245 (8%)
Query: 14 EKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAA 73
E++ M K EG D R +++E L + + ++ + +E + + + +E A
Sbjct: 151 ERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSESMSAERNA 210
Query: 74 LNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQ 133
L + ++ + + E+ T T K E + + + LE + ++R+ ++T Q
Sbjct: 211 LLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGELKQRLKKMTIQ 270
Query: 134 LKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSL 193
++ D +++++ L ++R++S K L EEL +G SL+
Sbjct: 271 RRDEETERIDLQLENEQLHED-------LRTLQERLESSQQKAGLLGEELASLG-SLRDH 322
Query: 194 EVSE-EKANQRVEEYKRQIKQLAVKLKEAEAR-----------AEFAEKTVKKLQKEVDR 241
++E ++ + Q+ QL + LKE +++ AE + ++KL E+ +
Sbjct: 323 TIAELHQSRLESAQMSLQLSQLNLALKEGQSQWAQERETLRQSAEADKDRIQKLSAELLK 382
Query: 242 LEDEL 246
LE+ L
Sbjct: 383 LEEWL 387
Score = 31.1 bits (70), Expect = 0.64
Identities = 38/182 (20%), Positives = 79/182 (43%), Gaps = 1/182 (0%)
Query: 86 EKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDAD 145
ER+ LA +D +R+ + LE + E+ ++L Q KEA+ +E
Sbjct: 147 GCQRERNDLMKKFLALEGDVSDMRSRIEQ-LETALRHSTEKTEELEEQHKEAQSSSESMS 205
Query: 146 AKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVE 205
A+ + + + A + + E +++ K E + L+ + LE + + QR++
Sbjct: 206 AERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGELKQRLK 265
Query: 206 EYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFA 265
+ Q + + + + E + ++ LQ+ ++ + + GL + SL D T A
Sbjct: 266 KMTIQRRDEETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLGEELASLGSLRDHTIA 325
Query: 266 EL 267
EL
Sbjct: 326 EL 327
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex which
functions in messenger ribonucleoprotein metabolism and
plays a role in preventing the transcription-associated
genetic instability. Tho2, along with four other
subunits forms THO.
Length = 296
Score = 32.7 bits (75), Expect = 0.18
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 189 SLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGL 248
SL + V +E ++ +E ++QIK+L + + +K K+L+ + +LE+EL
Sbjct: 18 SLYDIYVPKELYDKEIERLEKQIKELDSS----SSGIDKKKKEKKRLKSLIKKLEEELKK 73
Query: 249 NKDRYKS----LADEMDSTF 264
+ + + L++E S F
Sbjct: 74 HIEHNEKTKKRLSEEKSSWF 93
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 32.9 bits (76), Expect = 0.19
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 81 IEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQL-KEARL 139
+ E + EE K EA EA ++ + LE + ++ +E D+L + KEA+
Sbjct: 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQ 577
Query: 140 LAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEK 199
++A ++DE+ ++L ++ K EL E K + + + E ++K
Sbjct: 578 AIKEAKKEADEIIKELRQLQKG--------GYASVKAHELIEARKRLNKANEKKEKKKKK 629
Query: 200 ANQRVEEYK 208
++ EE K
Sbjct: 630 QKEKQEELK 638
Score = 31.0 bits (71), Expect = 0.80
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 18/140 (12%)
Query: 43 LDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEER----------- 91
+ K+ L++ + LEE E+ L E AL ++ + ++E+LE+ +E+
Sbjct: 511 IGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEE 570
Query: 92 -SGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDE 150
A + EA + ADE + E R Q ++L EAR A+ K ++
Sbjct: 571 AEKEAQQAIKEAKKEADEIIK-----ELRQLQKGGYASVKAHELIEARKRLNKANEKKEK 625
Query: 151 VSRKLAFVEDELEVAEDRVK 170
+K ++EL+V D VK
Sbjct: 626 KKKKQKEKQEELKVG-DEVK 644
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 32.6 bits (75), Expect = 0.21
Identities = 46/222 (20%), Positives = 92/222 (41%), Gaps = 8/222 (3%)
Query: 48 KNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAAD 107
+ +++ DLEE E+ L V + + + E E +EE ++LA+ QA D
Sbjct: 348 EKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALD 407
Query: 108 EANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAED 167
+ QQ + +++ L A++A+ +E K +EL E
Sbjct: 408 VQQTRA----IQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQ 463
Query: 168 RVKSGDAKIMELEEELKVVGNSLKSLEVSE--EKANQRVEEYKRQIKQLAVKLKEAEARA 225
++ A + E+ ++V + SE + A + + + Q + LA +L++ R
Sbjct: 464 KLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQ-RHLAEQLQQLRMRL 522
Query: 226 EFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAEL 267
E+ +++ Q+ +RL E + DE++ EL
Sbjct: 523 SELEQRLRQ-QQRAERLLAEFCKRLGKNLDDEDELEQLQEEL 563
Score = 28.8 bits (65), Expect = 4.3
Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 20/108 (18%)
Query: 47 KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERS-------------- 92
++ L + + L + L E+A LN +E+D + + +
Sbjct: 292 RRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIE 351
Query: 93 ------GTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQL 134
+L E ++ +EA+ + E R++ EE +D+L +QL
Sbjct: 352 RYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQL 399
Score = 28.4 bits (64), Expect = 5.3
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 178 ELEEELKVVGNSLKSLEVSEEKAN---QRVEEYKRQ---IKQLAVKLKEAEARAEFAEKT 231
E+ EL + + LE + A+ V+ RQ I++ L+E E R E +
Sbjct: 311 EMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEV 370
Query: 232 VKKLQKEVDRLEDELGLNKDRYKSLA 257
V++ ++ + E ++ L
Sbjct: 371 VEEADEQQEENEARAEAAEEEVDELK 396
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail. The myosin molecule is a
multi-subunit complex made up of two heavy chains and
four light chains it is a fundamental contractile
protein found in all eukaryote cell types. This family
consists of the coiled-coil myosin heavy chain tail
region. The coiled-coil is composed of the tail from two
molecules of myosin. These can then assemble into the
macromolecular thick filament. The coiled-coil region
provides the structural backbone the thick filament.
Length = 859
Score = 32.7 bits (75), Expect = 0.24
Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 8/208 (3%)
Query: 40 EVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKL 99
+ ++D LDQ K EK ES+++ L K+ ++ L T++
Sbjct: 158 QAEVDDLLAQLDQIAKAKLNAEKKAKQLESQLSELQVKLDELQRQLND-------LTSQK 210
Query: 100 AEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVE 159
+ + R + E + + QL +QL+EA+ E+ + + +L +E
Sbjct: 211 SRLQSENSDLTRQLEEAEAQVSNLSKLKSQLESQLEEAKRSLEEESRERANLQAQLRQLE 270
Query: 160 DELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVS-EEKANQRVEEYKRQIKQLAVKL 218
+L+ ++++ ELE +L ++ E + R EE + K+L K+
Sbjct: 271 HDLDSLREQLEEESEAKAELERQLSKANAEIQQWRSKFESEGALRAEELEELKKKLNQKI 330
Query: 219 KEAEARAEFAEKTVKKLQKEVDRLEDEL 246
E E AE A L+K RL+ EL
Sbjct: 331 SELEEAAEAANAKCDSLEKTKSRLQSEL 358
Score = 30.0 bits (68), Expect = 1.6
Identities = 55/269 (20%), Positives = 127/269 (47%), Gaps = 4/269 (1%)
Query: 3 AIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREK 62
+KKK++ E + A+D A+ +A K + + + +++ + E+ +
Sbjct: 546 RLKKKLEGDINELEIALDHANK---ANAEAQKNVKKYQQQVKELQTQVEEEQRAREDARE 602
Query: 63 ALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQ 122
LA AE AL +++ + LE++E A +LAEAS+ +E L + ++
Sbjct: 603 QLAVAERRATALEAELEELRSALEQAERARKQAETELAEASERVNELTAQNSSLIAQKRK 662
Query: 123 DEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEE 182
E + L + L EA + A+ ++ + A + +EL ++ + + +LE +
Sbjct: 663 LEGELAALQSDLDEAVNELKAAEERAKKAQADAARLAEELRQEQEHSQHLERLRKQLESQ 722
Query: 183 LKVVGNSLKSLEVSEEKANQR-VEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDR 241
+K + L E + K ++ +++ + ++++L +L + R +K ++K+++ V
Sbjct: 723 VKELQVRLDEAEAAALKGGKKMIQKLEARVRELEAELDGEQRRHAETQKNLRKMERRVKE 782
Query: 242 LEDELGLNKDRYKSLADEMDSTFAELAGY 270
L+ ++ +K + L D +D A++ Y
Sbjct: 783 LQFQVEEDKKNLERLQDLVDKLQAKIKTY 811
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 32.4 bits (74), Expect = 0.25
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 161 ELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKE 220
E+ V E R+K + + LEEE + L+ L+ EK +E ++R+++ K +E
Sbjct: 416 EITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDRE 475
Query: 221 AEARAEFAEKTVKKLQ---KEVDRLEDELGLNKDRYK 254
AR E+ K+L+ K V+ LE +L + K
Sbjct: 476 IRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 32.5 bits (74), Expect = 0.29
Identities = 35/216 (16%), Positives = 71/216 (32%), Gaps = 12/216 (5%)
Query: 42 DLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAE 101
L + +A + E E+ LA A + AA + +LE+ T +
Sbjct: 787 SLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTD--PD 844
Query: 102 ASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDE 161
A +A A + ++ +L+ A A + A++ ++
Sbjct: 845 ALEAVGLALKRFGDHL-------HTLEVAVRELRHAATRAAEQRARAARAESDAREAAED 897
Query: 162 LEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEA 221
A + ++ LEE VG + + + + R++ +LA L A
Sbjct: 898 AAEARAEAEEASLRLRTLEES---VGAMVDEIRARLAETRAALASGGRELPRLAEALATA 954
Query: 222 EARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLA 257
E AE+ + +D + + + A
Sbjct: 955 EEARGRAEEKRAEADATLDERAEARDHAIGQLREFA 990
Score = 30.9 bits (70), Expect = 0.85
Identities = 37/182 (20%), Positives = 64/182 (35%), Gaps = 2/182 (1%)
Query: 2 DAIKKKMQAMKMEKDSAMDKADTCEGQAKDAN--LRADKVEVDLDTTKKNLDQAVKDLEE 59
+++ ++ + E A KA K A L D ++DL T L+ L+
Sbjct: 796 AEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKR 855
Query: 60 REKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENR 119
L E V L E ++ A +A++A EA L
Sbjct: 856 FGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTL 915
Query: 120 SQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMEL 179
+ +D++ +L E R + ++ LA E+ AE++ DA + E
Sbjct: 916 EESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADATLDER 975
Query: 180 EE 181
E
Sbjct: 976 AE 977
Score = 28.2 bits (63), Expect = 5.5
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Query: 149 DEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYK 208
D++SR L DELE A + + DA+ LE E + L++L+ S A Q EE +
Sbjct: 279 DQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSP--AYQDAEELE 336
Query: 209 RQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAE 266
R A + + +L++E RL++E G D + L +
Sbjct: 337 RARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARA 394
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 32.1 bits (73), Expect = 0.30
Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 7/190 (3%)
Query: 52 QAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEAN- 110
+ E A + + + + ++L E L + A E
Sbjct: 669 CVQRLRVAAELQKEEARLALEGNIERTKELNDELRAELELHRKEILDLFDCGTADTEDAF 728
Query: 111 RMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVK 170
R E + Q E R++ L QL+ A + A D+ K E+EL + E+ +
Sbjct: 729 REAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELK----EEELALLEEAID 784
Query: 171 SGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEY--KRQIKQLAVKLKEAEARAEFA 228
+ D ++ EL ++ + + LE A R K +++ A K +
Sbjct: 785 ALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVL 844
Query: 229 EKTVKKLQKE 238
E+ ++ ++
Sbjct: 845 EEALRLFKER 854
>gnl|CDD|234541 TIGR04320, Surf_Exclu_PgrA, SEC10/PgrA surface exclusion domain.
This model describes a conserved domain found in surface
proteins of a number of Firmutes. Many members have
LPXTG C-terminal anchoring motifs and a substantial
number have the KxYKxGKxW putative sorting signal at the
N-terminus. The tetracycline resistance plasmid pCF10 in
Enterococcus faecalis promotes conjugal plasmid transfer
in response to sex pheromones, but PgrA/Sec10 encoded by
that plasmid, a member of this family, specifically
inhibits the ability of cells to receive homologous
plasmids. The phenomenon is called surface exclusion.
Length = 356
Score = 32.0 bits (73), Expect = 0.32
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 27 GQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVA--------ALNRKV 78
K + DL + L+ A L + A AAA++ +A A + +
Sbjct: 254 NSLKALQAALATAQADLAAAQTALNTAQAALTTAQTAYAAAQAALATAQKELANAQAQAL 313
Query: 79 QMIEEDLEKSEERSGTATAKLAEASQAADEAN 110
Q + +L ++ A A+LA+A +A N
Sbjct: 314 QTAQNNLATAQAALANAEARLAKAKEALANLN 345
Score = 27.4 bits (61), Expect = 8.4
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 1/108 (0%)
Query: 41 VDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLA 100
+ T +L L + LAAA++ + + + ++ TA +LA
Sbjct: 247 TPIPNTPNSLKALQAALATAQADLAAAQTALNTAQAALTTAQTAYAAAQAALATAQKELA 306
Query: 101 EA-SQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAK 147
A +QA A + E R+ + L A
Sbjct: 307 NAQAQALQTAQNNLATAQAALANAEARLAKAKEALANLNADLAKKQAA 354
>gnl|CDD|224849 COG1938, COG1938, Archaeal enzymes of ATP-grasp superfamily
[General function prediction only].
Length = 244
Score = 31.5 bits (72), Expect = 0.33
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 186 VGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTV 232
N + L V +K + EE + Q+++LA +L++ E R E E+
Sbjct: 195 ALNKMLGLNVDTDKLEKEAEEIEEQLEKLAEQLEKEEERVEREEEPP 241
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 32.0 bits (73), Expect = 0.33
Identities = 42/193 (21%), Positives = 98/193 (50%), Gaps = 5/193 (2%)
Query: 54 VKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMC 113
+++LE++ + + ++ L +++ ++++LEK EE + + +E +
Sbjct: 517 LEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELL 576
Query: 114 KVLENRSQQDEERMDQLTNQLKEAR---LLAEDADAKSDEVSRKLAFVEDELEVAEDRVK 170
K LE + E +++ +L+ L +DA+ + + ++L +E+EL+ A + +
Sbjct: 577 KELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELA 636
Query: 171 SGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEK 230
+ ++ EL +EL+ + E E+ + E R++ L +L+E E R E +K
Sbjct: 637 ETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEELEKRREEIKK 694
Query: 231 TVKKLQKEVDRLE 243
T++KL++E++ E
Sbjct: 695 TLEKLKEELEERE 707
Score = 31.6 bits (72), Expect = 0.54
Identities = 44/212 (20%), Positives = 98/212 (46%), Gaps = 8/212 (3%)
Query: 49 NLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADE 108
L++ VK+LEE ++ + E E+ +L + +EE + + EER ++ E + E
Sbjct: 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE 284
Query: 109 ANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDR 168
+ K + E ++ ++L+E + + + + ++ ELE E+R
Sbjct: 285 LKEL-KEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI----KELEEKEER 339
Query: 169 VKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFA 228
++ K+ ELE+ L+ + + E ++ K +E K+++ L ++ E E
Sbjct: 340 LEELKKKLKELEKRLEELEERHELYEEAKAKKE-ELERLKKRLTGLTP--EKLEKELEEL 396
Query: 229 EKTVKKLQKEVDRLEDELGLNKDRYKSLADEM 260
EK +++++E+ ++ +G K K L +
Sbjct: 397 EKAKEEIEEEISKITARIGELKKEIKELKKAI 428
Score = 30.8 bits (70), Expect = 0.97
Identities = 41/205 (20%), Positives = 106/205 (51%), Gaps = 7/205 (3%)
Query: 42 DLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAE 101
+L+ K+ +++ K+LE E + E ++ L +++ +++++E+ EE+ +L E
Sbjct: 232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKE 290
Query: 102 ASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKS---DEVSRKLAFV 158
++ + + + + ++ E+R+ +L ++ ++ + K +E+ +KL +
Sbjct: 291 KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKEL 350
Query: 159 EDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKL 218
E LE E+R + + + +EEL+ + L L EK + +EE ++ +++ ++
Sbjct: 351 EKRLEELEERHELYE-EAKAKKEELERLKKRLTGLTP--EKLEKELEELEKAKEEIEEEI 407
Query: 219 KEAEARAEFAEKTVKKLQKEVDRLE 243
+ AR +K +K+L+K ++ L+
Sbjct: 408 SKITARIGELKKEIKELKKAIEELK 432
Score = 30.4 bits (69), Expect = 1.00
Identities = 49/232 (21%), Positives = 105/232 (45%), Gaps = 9/232 (3%)
Query: 42 DLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAE 101
D + KNL + +K+++ R + L + ++ E++LE+ +++L E
Sbjct: 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPE 218
Query: 102 ASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDE 161
+ ++ + K LE ++ EE +L + R L E K E+ ++ ++ E
Sbjct: 219 LREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEE----KIRELEERIEELKKE 274
Query: 162 LEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEA 221
+E E++VK ++ E EE + + + +R+ + +I + ++KE
Sbjct: 275 IEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEL 333
Query: 222 E---ARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
E R E +K +K+L+K ++ LE+ L + K+ +E++ L G
Sbjct: 334 EEKEERLEELKKKLKELEKRLEELEERHEL-YEEAKAKKEELERLKKRLTGL 384
Score = 30.4 bits (69), Expect = 1.0
Identities = 52/229 (22%), Positives = 111/229 (48%), Gaps = 17/229 (7%)
Query: 47 KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
+ ++ + +L E EK L+ E E+ + ++ ++LE+ EER KL E +
Sbjct: 299 SEFYEEYLDELREIEKRLSRLEEEINGIEERI----KELEEKEERLEELKKKLKELEKRL 354
Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
+E ++ E ++ +E +++L +L L E + + +E+ + +E+E+
Sbjct: 355 EELEERHELYE-EAKAKKEELERLKKRLTG--LTPEKLEKELEELEKAKEEIEEEISKIT 411
Query: 167 DRVKSGDAKIMELE---EELKVVGNS--LKSLEVSEEKANQRVEEYKRQIKQLAVKLKEA 221
R+ +I EL+ EELK + E++EE + +EEY ++K++ +LKE
Sbjct: 412 ARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEI 471
Query: 222 EARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAGY 270
E + K +++L+K + + + + + K LA+++ +L Y
Sbjct: 472 EEKERKLRKELRELEKVLKKESELI-----KLKELAEQLKELEEKLKKY 515
Score = 30.4 bits (69), Expect = 1.2
Identities = 47/228 (20%), Positives = 106/228 (46%), Gaps = 13/228 (5%)
Query: 42 DLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAE 101
++ K +++ + L + + L + + L + ++ E+ E E+ +L +
Sbjct: 463 RIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEK 522
Query: 102 ASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDE 161
++ ++ L+ + ++ +++L K+ L + K DE+ +LA + E
Sbjct: 523 KAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEK----KLDELEEELAELLKE 578
Query: 162 LEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEA 221
LE + G + ELEE LK + + + A + +E ++++K+L +L +A
Sbjct: 579 LE------ELGFESVEELEERLKELEPFYNEY-LELKDAEKELEREEKELKKLEEELDKA 631
Query: 222 EARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELAG 269
EK +++L+KE++ LE + +++ Y+ L +E ELAG
Sbjct: 632 FEELAETEKRLEELRKELEELEKK--YSEEEYEELREEYLELSRELAG 677
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 32.2 bits (74), Expect = 0.34
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 10/133 (7%)
Query: 117 ENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKI 176
E ++ E+ + L + R L + + S L V E EDR+++ + I
Sbjct: 714 ELIDEEAEKEFELLKEIISAIRNLRAEMNLSP---SAPLKVVLVGSEELEDRLEANEDDI 770
Query: 177 MELE--EELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKK 234
L EEL+++ + V E + L + A EK ++K
Sbjct: 771 KGLANLEELEILSPDPEEPPVEVTAVVGGAELFL-----PLAGLIDLAAELARLEKELEK 825
Query: 235 LQKEVDRLEDELG 247
L+KE+DR+E +L
Sbjct: 826 LEKEIDRIEKKLS 838
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 31.8 bits (73), Expect = 0.44
Identities = 34/199 (17%), Positives = 81/199 (40%), Gaps = 29/199 (14%)
Query: 59 EREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEA---------SQAADEA 109
E+ A ++E+ L ++V+ +E++L++ + + + E +
Sbjct: 359 EQAAASPEYDTELEVLLQRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPR 418
Query: 110 NRMCKVLENRSQQD----EERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVA 165
++ KVL+ ++QD + ++ LK R + S +A ED + +A
Sbjct: 419 GKIYKVLKEATRQDLELLKNVWGEILESLKAQRK----SLRALLVNSEPVAASEDTVVLA 474
Query: 166 ED------RVKSGDAKIMELEEEL-KVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKL 218
+ + +E L K++G S++ + V E++ + EE+ ++ K
Sbjct: 475 FEYEIHFEKAMLDKELNDTIENILSKLLGKSVEIVAVPEDEWQKIREEFLQKHKN----- 529
Query: 219 KEAEARAEFAEKTVKKLQK 237
+E E E + + ++
Sbjct: 530 EEEEEEEEEELPLIPEAKE 548
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 31.2 bits (71), Expect = 0.44
Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 5/156 (3%)
Query: 37 DKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTAT 96
D++E + +K L +A +LE KAL A E E+ L +V +E ++++ ER A
Sbjct: 20 DRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAE 79
Query: 97 AKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLA 156
KL+ R + L Q +ER++ L ++L E E + + +++ +L
Sbjct: 80 EKLSAVKDE-----RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLE 134
Query: 157 FVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKS 192
+E L AE R++ A+I E +EL LK
Sbjct: 135 RLEKNLAEAEARLEEEVAEIREEGQELSSKREELKE 170
Score = 30.0 bits (68), Expect = 1.00
Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 6/173 (3%)
Query: 55 KDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCK 114
+ + A+ + E L +++ I + L+K++ L ++
Sbjct: 3 NNNLKSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVS 62
Query: 115 VLENRSQQDEERMDQLTNQLKEARLLAEDADAKS--DEVSRKLAFVEDELEVAEDRVKSG 172
LE+ Q+ ER+ + +L + E ++ +EDEL + ++
Sbjct: 63 QLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKL 122
Query: 173 DAKIMELEEELKVVGNSL----KSLEVSEEKANQRVEEYKRQIKQLAVKLKEA 221
+ +I +L+E L+ + +L LE + + +E + ++L KL
Sbjct: 123 EKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPE 175
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 31.3 bits (72), Expect = 0.51
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 10/148 (6%)
Query: 95 ATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARL-LAEDADAKSDEVSR 153
A AK+ EA + A ++LE ++ E + + KE L + + + E
Sbjct: 29 AEAKIKEAEEEAK------RILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRN 82
Query: 154 KLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEE-YKRQIK 212
+L +E L E+ + + + EEEL+ L+ + EK + +EE + Q++
Sbjct: 83 ELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQ 142
Query: 213 QLAV--KLKEAEARAEFAEKTVKKLQKE 238
+L L EA+ EK ++ + E
Sbjct: 143 ELERISGLTAEEAKEILLEKVEEEARHE 170
Score = 31.3 bits (72), Expect = 0.57
Identities = 23/111 (20%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 135 KEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLE 194
+EA+ + E+A +++ + ++ LE E+ K E E+EL+ N L+ LE
Sbjct: 38 EEAKRILEEAKKEAEAIKKEA-----LLEAKEEIHK----LRNEFEKELRERRNELQKLE 88
Query: 195 VSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDE 245
+ + ++ +++ +L++ E E ++ ++K ++E++ L +E
Sbjct: 89 KRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEE 139
Score = 28.6 bits (65), Expect = 4.0
Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 1 MDAIKKKMQAMKME-----KDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVK 55
++ KK+ +A+K E K+ + E + ++ K+E L ++NLD+ ++
Sbjct: 44 LEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLE 103
Query: 56 DLEEREKALAAAESEVAALNRKVQMIEEDLEKSEE 90
LE+RE+ L E E+ ++++ EE+LE+ E
Sbjct: 104 LLEKREEELEKKEKELEQKQQELEKKEEELEELIE 138
>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional.
Length = 171
Score = 30.3 bits (69), Expect = 0.67
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 177 MELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAE-----KT 231
MEL EEL+ + S K E + E +RV++ + Q V+ + EA A+ K
Sbjct: 96 MELREELEDIEQS-KDPEAALESFIKRVKKMFKTRLQQMVEQLDNEAWDAAADTVRKLKF 154
Query: 232 VKKLQKEVDRLEDEL 246
+ KL+ EV++LE++L
Sbjct: 155 LDKLRSEVEQLEEKL 169
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 31.1 bits (70), Expect = 0.69
Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 1/123 (0%)
Query: 14 EKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAA 73
E +A + + + ADK + D + N D+ ++ ++++
Sbjct: 207 ESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADT 266
Query: 74 LNRKV-QMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTN 132
+ K + + E+ ++ E++ K E + A + E+++ + E +L
Sbjct: 267 SSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEA 326
Query: 133 QLK 135
Q K
Sbjct: 327 QKK 329
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 31.2 bits (70), Expect = 0.71
Identities = 33/214 (15%), Positives = 92/214 (42%), Gaps = 10/214 (4%)
Query: 57 LEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVL 116
++ +EK + +++ +NR +Q ++ D+E+ E GT + A + M +
Sbjct: 739 IDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIM-ERF 797
Query: 117 ENRSQQDEERMDQLTNQL---------KEARLLAEDADAKSDEVSRKLAFVEDELEVAED 167
+ + E ++ Q +L ++ ++ + D V K+ ++ ++
Sbjct: 798 QMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQE 857
Query: 168 RVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEF 227
+++ +K EL+ E +G +L+ + EE+ + E + I+++ ++ F
Sbjct: 858 QIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETF 917
Query: 228 AEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMD 261
EK ++ ++ + E +D+ + +++
Sbjct: 918 LEKDQQEKEELISSKETSNKKAQDKVNDIKEKVK 951
Score = 28.5 bits (63), Expect = 4.9
Identities = 35/217 (16%), Positives = 97/217 (44%), Gaps = 15/217 (6%)
Query: 59 EREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLEN 118
ER+ A AA+ + + L+R VQ + ++ ++ + T +K+ + + + L++
Sbjct: 805 ERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKS 864
Query: 119 RS--------------QQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEV 164
++ Q+ ++ +QL E + L + ++ S F+E + +
Sbjct: 865 KTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQE 924
Query: 165 AEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYK-RQIKQLAVKLKEAEA 223
E+ + S + + ++++ + +K++ + ++++ K +KQ +L A
Sbjct: 925 KEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNA 984
Query: 224 RAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEM 260
+ E EK +K+ +++ + ++ K + + L D +
Sbjct: 985 QLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNL 1021
>gnl|CDD|222855 PHA02529, O, capsid-scaffolding protein; Provisional.
Length = 278
Score = 30.5 bits (69), Expect = 0.79
Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 12/125 (9%)
Query: 79 QMIEEDLEKSEERSG-TATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEA 137
+ E EE A L E K L +R ++D+ D+ + EA
Sbjct: 153 NLFSVACEAKEEFEPEAELAALFE----------KVKKLFSRKKEDDAMTDEQFADVHEA 202
Query: 138 -RLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVS 196
+AE D S +V+ + + + L+E L + + +
Sbjct: 203 VEGVAEKIDHTSAQVATTETAEPPQEGKDTEENGETAEQFSALKETLDKLASKFNEEVPA 262
Query: 197 EEKAN 201
++
Sbjct: 263 PQRPP 267
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 30.9 bits (70), Expect = 0.85
Identities = 43/258 (16%), Positives = 96/258 (37%), Gaps = 27/258 (10%)
Query: 26 EGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDL 85
Q + +E ++ LDQ + L A + + + L
Sbjct: 170 FAQEWRLEWNSQGLEDYRKRKRQRLDQKAAEY------LRQAAQAGTTGSSSADDLADLL 223
Query: 86 EKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDAD 145
K S ++ + A +V +E+R + +L+ + ++ +
Sbjct: 224 SKFRLDSWDKGSRFTRTEKVEQAATAAAEVPPAEMDTEEDRTKEREAELEALQEQIDELE 283
Query: 146 AKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKV----------VGNSLKSLEV 195
+ +EV ++ + +++ + + + + ELEEE K+ N++ L+
Sbjct: 284 SSIEEVLSEIKALASKIKQVNEELTTVRQENEELEEEYKIKKRTVELLPDAENNVAKLQA 343
Query: 196 SEEKANQRVEEYKRQ-----------IKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLED 244
+++R+ E +Q + L K + E + +KKL+ +++ LE
Sbjct: 344 LVVASSERLLELAQQWEAHRTPLIDEYRSLKEKNRNKEDETQRQLDEIKKLRNKIEELES 403
Query: 245 ELGLNKDRYKSLADEMDS 262
EL + YK L DE ++
Sbjct: 404 ELQTKEQLYKQLLDEYEN 421
>gnl|CDD|227250 COG4913, COG4913, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 1104
Score = 30.8 bits (69), Expect = 0.86
Identities = 48/219 (21%), Positives = 77/219 (35%), Gaps = 21/219 (9%)
Query: 53 AVKDLEEREKALA---AAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEA 109
L+E+ ALA A L + I E L+ ER + +A A A D A
Sbjct: 645 EYIKLQEQANALAHIQALNFASIDLPSAQRQIAE-LQARLERLTHTQSDIAIAKAALDAA 703
Query: 110 NRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDA-----DAKSDEVSRKLA--FVEDEL 162
KVLE + QQ+ L LK A +L+ + + A F +
Sbjct: 704 QTRQKVLERQYQQEVTECAGLKKDLKRAAMLSRKVHSIAKQGMTGALQALGAAHFPQVAP 763
Query: 163 EVAEDRVKSGDAKIME-LEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEA 221
E +D V + L++ + V L+ L + + K+ L E
Sbjct: 764 EQHDDIVDIERIEHRRQLQKRIDAVNARLRRLR------EEIIGRMSDAKKEDTAALSEV 817
Query: 222 EARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEM 260
A + + + +LQ ED L R++ L +
Sbjct: 818 GAELDDIPEYLARLQ---TLTEDALPEFLARFQELLNRS 853
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 30.4 bits (69), Expect = 0.90
Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 14/136 (10%)
Query: 130 LTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDA-----KIMELEEELK 184
N L E RL +++E+ +K VE+ LE A + A ++ +E L
Sbjct: 18 ARNSLYELRLDLARLLLENEELKQK---VEEALEGATNEDGKLAADLLKLEVARKKERLN 74
Query: 185 VVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLED 244
+ + L+ E+ +R+EE KR + Q L A + K+ ++++L+D
Sbjct: 75 QIRARISQLKEEIEQKRERIEELKRALAQRRSDLSSASY------QLEKRRASQLEKLQD 128
Query: 245 ELGLNKDRYKSLADEM 260
E+ + + +L +
Sbjct: 129 EIKRTRSKLNALHSLL 144
>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional.
Length = 508
Score = 30.2 bits (68), Expect = 1.1
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 21 KADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQM 80
+A+T +A+DA AD+ + + L + E+A A A++E+ ++ +
Sbjct: 191 RAETLAREAEDAARAADEAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKALAA 250
Query: 81 IEEDLEKS--EERSGTATAKLAEASQAADEA 109
+ D K+ EER A + AEA+ D A
Sbjct: 251 AKTDEAKARAEERQQKAAQQAAEAATQLDTA 281
Score = 30.2 bits (68), Expect = 1.1
Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 17/136 (12%)
Query: 44 DTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEAS 103
+T + + A + +E + A AAA E A L + L K E A A+L
Sbjct: 193 ETLAREAEDAARAADEAKTAAAAAAREAAPL-------KASLRKLERAKARADAELK--- 242
Query: 104 QAADEANRMCKVLENRSQQDEERMDQLTNQLKEA--RLLAEDADAKSDEVSRKLAFVEDE 161
AD+A K E +++ EER + Q EA +L ADA E R A E
Sbjct: 243 -RADKALAAAKTDEAKARA-EERQQKAAQQAAEAATQLDTAKADA---EAKRAAAAATKE 297
Query: 162 LEVAEDRVKSGDAKIM 177
A K+ AK
Sbjct: 298 AAKAAAAKKAETAKAA 313
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 30.3 bits (68), Expect = 1.2
Identities = 48/196 (24%), Positives = 83/196 (42%), Gaps = 16/196 (8%)
Query: 58 EEREKALAAA-ESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVL 116
EE +KAL + ++ + V I+ +E A + DE +
Sbjct: 291 EEFKKALESYFDTAFTSFQESVATIKSGVEDY----FPEANLTKIALERLDE---IACTE 343
Query: 117 ENRSQQD--EERMDQLTNQLKEARL-LAEDADAKSDEVSR--KLAFVEDELEVAEDRVKS 171
+ Q D E + + L+ RL KS E+SR KL +DE++ +D +K
Sbjct: 344 AWKDQTDLDTENLKNIIETLRSKRLANQAKMLDKSKEMSRNFKLDSTKDEIDAIKDLIKK 403
Query: 172 GDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKT 231
+A+++ E +K KS + EK V E+K +++ K E + EK
Sbjct: 404 ANAQVVNHNERIKNFEKQKKSSKEQLEKF--LVNEFKSDVQEYN-KYCGLEKKINNLEKE 460
Query: 232 VKKLQKEVDRLEDELG 247
+K Q+EV +L +E+
Sbjct: 461 IKNNQEEVKKLSNEIK 476
>gnl|CDD|227666 COG5374, COG5374, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 29.4 bits (66), Expect = 1.3
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 33 NLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEE 90
+ DK+E D K L +A LE +K + N + ++++ K +E
Sbjct: 135 GGKIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESSKKKE 192
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 29.9 bits (68), Expect = 1.5
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 25/130 (19%)
Query: 125 ERMDQLTNQLKEARLLAEDADAKSDEVSRK-LAFVEDELEVAEDRVKSGDAKIMELEEEL 183
E +D+L ++ + + E + DE S++ L +E EL ELEEE
Sbjct: 405 EELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELA--------------ELEEEY 450
Query: 184 KVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEK------TVKKLQK 237
L+ +E+ A Q +++ K +I+Q+ ++L++AE + A+ + +L+K
Sbjct: 451 A----DLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEK 506
Query: 238 EVDRLEDELG 247
+ E +LG
Sbjct: 507 RLQAAEAKLG 516
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 29.9 bits (68), Expect = 1.5
Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Query: 132 NQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLK 191
N L + + + +R+ A + E + + + + ELEE+ + + L+
Sbjct: 142 NLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLE 201
Query: 192 SLEVSEEKANQRVEEYKRQIKQLAVK---LKEAEARA 225
L+ + +Q ++ +++I A K L E E R
Sbjct: 202 QLQEKAAETSQERKQKRKEITDQAAKRLELSEEETRI 238
Score = 28.0 bits (63), Expect = 6.1
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 43 LDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEA 102
+ T K+ L+ ++ + + A + E+ AL +EE ++ E + K AE
Sbjct: 151 VLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAET 210
Query: 103 SQ 104
SQ
Sbjct: 211 SQ 212
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 30.0 bits (68), Expect = 1.6
Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 9/128 (7%)
Query: 128 DQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSG---DAKIMELEEELK 184
+ + Q+K+ A+ + ++L + +ELE + G +++ELE E
Sbjct: 147 ELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERA 206
Query: 185 VVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLED 244
L LE E ++++E + + +Q+ +E E E E + L +
Sbjct: 207 EAQGELGRLEAELEVLKRQIDELQLERQQIEQTFRE-EVLEELTEAQA-----RLAELRE 260
Query: 245 ELGLNKDR 252
L +DR
Sbjct: 261 RLNKARDR 268
>gnl|CDD|223522 COG0445, GidA, Flavin-dependent tRNA uridine
5-carboxymethylaminomethyl modification enzyme GidA
[Cell cycle control, cell division, chromosome
partitioning].
Length = 621
Score = 29.8 bits (68), Expect = 1.6
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 136 EARLL--AEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSL 193
E RLL ++AD + E+ R+L V+DE R + K +EEE++ LKS
Sbjct: 431 EYRLLLREDNADLRLTEIGRELGLVDDE------RYERFLKKKENIEEEIER----LKST 480
Query: 194 EVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEF 227
V+ + + + Q + L + R E
Sbjct: 481 WVTPSEVAKELLALGGQPLKRRSSLYDLLRRPEI 514
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 29.7 bits (67), Expect = 1.9
Identities = 45/255 (17%), Positives = 95/255 (37%), Gaps = 13/255 (5%)
Query: 2 DAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEERE 61
++ ++++ + + A ++ D + + + ++ + D E
Sbjct: 683 ASLDERLRDAERALEEAEERHDEAQSALEAWQEQWYDALLEAGLGGRASPAGALDALELL 742
Query: 62 KALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEAS--QAADEANRMCKVLENR 119
+ + L +++ +E DL + EE +A ADE R K R
Sbjct: 743 QNIKEKLQAADDLRQRIAAMERDLARFEEEVEALAEAVAPEMLGTPADETARALKQRLKR 802
Query: 120 SQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKL--------AFVEDELEVAE---DR 168
++ ++L +++EA +A A DE +L +EL A D
Sbjct: 803 ARDTAAAAEKLAEEIEEAEKEVSEAAAALDEAEARLTALLRAARCTTIEELLAAVERSDT 862
Query: 169 VKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFA 228
+ +I LE L G L + E A +E ++++LA ++E E
Sbjct: 863 YRELRKRIAALERTLVRAGGGLSLEALVAEAAALDPDELPARLEELARDIEELEEELNEL 922
Query: 229 EKTVKKLQKEVDRLE 243
+ V ++E+ R++
Sbjct: 923 AQEVGAAKQELARMD 937
Score = 28.2 bits (63), Expect = 5.9
Identities = 41/231 (17%), Positives = 72/231 (31%), Gaps = 10/231 (4%)
Query: 35 RADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGT 94
A+K + + L A + LEE E+ A+S + A + + S
Sbjct: 674 EAEKQAARKASLDERLRDAERALEEAEERHDEAQSALEAWQEQWYDALLEAGLGGRASPA 733
Query: 95 ATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRK 154
E Q E + L R E + + E LAE +
Sbjct: 734 GALDALELLQNIKEKLQAADDLRQRIAAMERDLARFEE---EVEALAEAVAPEMLGTPAD 790
Query: 155 LAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQL 214
L+ R + A +L EE++ + + ++A R+ R +
Sbjct: 791 ETA--RALKQRLKRARDTAAAAEKLAEEIEEAEKEVSEAAAALDEAEARLTALLRAAR-- 846
Query: 215 AVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRY--KSLADEMDST 263
E A T ++L+K + LE L ++L E +
Sbjct: 847 -CTTIEELLAAVERSDTYRELRKRIAALERTLVRAGGGLSLEALVAEAAAL 896
>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase.
Length = 455
Score = 29.4 bits (66), Expect = 2.0
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 50 LDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEA 109
L++ KD+EE EK + ++ + IEE+LEK E+ G L + +
Sbjct: 363 LERLEKDVEEGEKTIV----------KEARQIEEELEKEVEKLGKEEESLFKRVALEEGL 412
Query: 110 NRMCKVLENRSQQDEERMDQLTNQLKEARLLAED 143
+ + EN + E + L++ ++ A +
Sbjct: 413 KELEQDEENFLK---ELSKEEKELLEKLKMEASE 443
>gnl|CDD|227584 COG5259, RSC8, RSC chromatin remodeling complex subunit RSC8
[Chromatin structure and dynamics / Transcription].
Length = 531
Score = 29.5 bits (66), Expect = 2.0
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Query: 163 EVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAE 222
E +KSG + E + + +L+ +EKA + +R++++L L +A+
Sbjct: 371 EKQRAIIKSGKISHINRESQEHIEEVIEYALDSGKEKAKLQATNEERKMERLRNVLIQAQ 430
Query: 223 -ARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAE 266
+ + +K+L+K EL N + A+E E
Sbjct: 431 LEKLKMKLGHLKELEKSTSLERQELDANLLLRRLNAEEKLFAIDE 475
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 29.4 bits (66), Expect = 2.1
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 5 KKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREK-- 62
K K E + ++K E + + N +K+ + + KK L+Q +++L+ERE+
Sbjct: 503 KTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK 562
Query: 63 ----------ALAAAESEVAALNRKVQMIEEDLEKS 88
AL A + EV ++ R+++ + K
Sbjct: 563 KLELEKEAQEALKALKKEVESIIRELKEKKIHKAKE 598
Score = 28.2 bits (63), Expect = 5.3
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 198 EKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLA 257
E+A E+K +I L KL E E + ++KL KE ++L+ EL + K
Sbjct: 500 EQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERE 559
Query: 258 DEMDS 262
Sbjct: 560 RNKKL 564
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 29.5 bits (66), Expect = 2.1
Identities = 35/232 (15%), Positives = 87/232 (37%), Gaps = 7/232 (3%)
Query: 42 DLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAE 101
++D ++ L + +LE +K +A E + ++++ + + + + + L E
Sbjct: 184 NIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNE 243
Query: 102 ASQAADEANRM---CKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFV 158
S D NR K E+ + E+ + + + D K+
Sbjct: 244 LSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKY 303
Query: 159 EDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLA--- 215
++++E + + + DA+I + +K + L+ K R ++ QI +L
Sbjct: 304 KNDIENKKQILSNIDAEINKYHAIIKKLSV-LQKDYNDYIKKKSRYDDLNNQILELEGYE 362
Query: 216 VKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAEL 267
+ E +K +++ K ++R+ + + D + E+
Sbjct: 363 MDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEI 414
Score = 28.3 bits (63), Expect = 6.0
Identities = 32/188 (17%), Positives = 78/188 (41%), Gaps = 16/188 (8%)
Query: 26 EGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDL 85
E +K+ + + L + + D K+L E L S+V++LN++++ + E+L
Sbjct: 380 EEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENL 439
Query: 86 EKSEER----SGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLA 141
++ +G + + + +++N + + + EE++ ++ ++K
Sbjct: 440 DELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVK------ 493
Query: 142 EDADAKSDEVSRKLAFVEDELEVAE-DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKA 200
DE L ++ LE E ++ + KI +L+ + + L+ +K
Sbjct: 494 -----DIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKY 548
Query: 201 NQRVEEYK 208
+ YK
Sbjct: 549 EEIKNRYK 556
Score = 27.9 bits (62), Expect = 6.9
Identities = 26/136 (19%), Positives = 60/136 (44%), Gaps = 4/136 (2%)
Query: 114 KVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGD 173
K +E S+ E ++ LK + + + +E++ KL + ++ R+++
Sbjct: 377 KKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALR 436
Query: 174 AKIMELEEELKVVGNSLK----SLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAE 229
+ EL ++++ + EEK+N + Y + +L K++E E + +
Sbjct: 437 ENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDID 496
Query: 230 KTVKKLQKEVDRLEDE 245
+ + L+K + LE E
Sbjct: 497 EKIVDLKKRKEYLESE 512
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein. This family consists of several
HOOK1, 2 and 3 proteins from different eukaryotic
organisms. The different members of the human gene
family are HOOK1, HOOK2 and HOOK3. Different domains
have been identified in the three human HOOK proteins,
and it was demonstrated that the highly conserved
NH2-domain mediates attachment to microtubules, whereas
the central coiled-coil motif mediates homodimerisation
and the more divergent C-terminal domains are involved
in binding to specific organelles (organelle-binding
domains). It has been demonstrated that endogenous HOOK3
binds to Golgi membranes, whereas both HOOK1 and HOOK2
are localised to discrete but unidentified cellular
structures. In mice the Hook1 gene is predominantly
expressed in the testis. Hook1 function is necessary for
the correct positioning of microtubular structures
within the haploid germ cell. Disruption of Hook1
function in mice causes abnormal sperm head shape and
fragile attachment of the flagellum to the sperm head.
Length = 713
Score = 29.4 bits (66), Expect = 2.2
Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 26/242 (10%)
Query: 47 KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAK-------- 98
K L Q +L+++ L ++ + N K+Q LE S +K
Sbjct: 188 KDELAQRCHELDKQVLLLQEEKNSLQQENEKLQERLAQLEGSSLGPNQLGSKKYNLLQSQ 247
Query: 99 -------LAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEV 151
A D+ C+ LE + + R D+LT+ E++ L ++ D E
Sbjct: 248 LEQLQEENFRLEAARDDYRIKCEELEKELAELQHRNDELTSLAAESQALKDEIDVLR-ES 306
Query: 152 SRKLAFVEDELEVAEDRVKS-GDAK--IMELEEELKVVGNSLKSLEVSEEKANQ---RVE 205
S K +E ++E + +++ D + + LEE + + LE +KAN ++E
Sbjct: 307 SDKAKKLEAQVETYKKKLEDLNDLRRQVKLLEERNAMYMQNTVQLEEELKKANAARGQLE 366
Query: 206 EYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFA 265
YKRQ+++L KL E +A+ E K+L+++++ L+ E K+R + D + T
Sbjct: 367 TYKRQVQELHAKLSEESKKADKLEFEYKRLEEKLEALQKE----KERLLAERDSLRETNE 422
Query: 266 EL 267
EL
Sbjct: 423 EL 424
Score = 27.8 bits (62), Expect = 6.8
Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 21/175 (12%)
Query: 89 EERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKS 148
+ G+ ++ E Q ++ANR LE + + +R+ +L Q+++ + ++ +KS
Sbjct: 473 LGQEGSENERITELQQLLEDANRRNNELETQLRLANQRILELQQQVEDLQKALQEQGSKS 532
Query: 149 DEVS----------RKLAFVEDEL--------EVAEDRVKSGDAKIMELEEELKVVGNSL 190
++ S +L +EL E+ D+ ++ KI ELE L+ +
Sbjct: 533 EDSSLLKSKLEEHLEQLHEANEELQKKREQIEELEPDQDQNLSRKIAELEAALQKKDEDM 592
Query: 191 KSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDE 245
+++E E+ + VE+ + IK L K A + +K + + K + LE E
Sbjct: 593 RAME---ERYKKYVEKAREVIKTLDPKQNPASPEIQLLKKQLTERDKRIRHLESE 644
>gnl|CDD|236880 PRK11198, PRK11198, LysM domain/BON superfamily protein;
Provisional.
Length = 147
Score = 28.3 bits (64), Expect = 2.3
Identities = 13/64 (20%), Positives = 21/64 (32%)
Query: 4 IKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKA 63
+K+ + D AD + L V V ++ K + E +EK
Sbjct: 10 AGEKLFDAVTAQADNEDAADALKEHISKQGLGDADVNVQVEDGKATVSGDAASQEAKEKI 69
Query: 64 LAAA 67
L A
Sbjct: 70 LLAV 73
>gnl|CDD|217892 pfam04100, Vps53_N, Vps53-like, N-terminal. Vps53 complexes with
Vps52 and Vps54 to form a multi- subunit complex
involved in regulating membrane trafficking events.
Length = 375
Score = 29.0 bits (65), Expect = 2.6
Identities = 19/75 (25%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Query: 173 DAKIMELEEELKVVGNSLKSLE----VSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFA 228
D+ I +++EE++ + ++K++ EK + ++E ++ I++L K+KE +++AE
Sbjct: 24 DSLIQKIQEEIRRLDANIKTVVRGQANVGEKGKEALDEAQKAIEELFQKIKEIKSKAEST 83
Query: 229 EKTVKKLQKEVDRLE 243
E+ VK++ +++ +L+
Sbjct: 84 EEMVKEITRDIKQLD 98
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869).
This family consists of a number of sequences found in
Arabidopsis thaliana, Oryza sativa and Lycopersicon
esculentum (Tomato). The function of this family is
unknown.
Length = 767
Score = 29.2 bits (65), Expect = 2.8
Identities = 38/205 (18%), Positives = 79/205 (38%), Gaps = 7/205 (3%)
Query: 45 TTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQ 104
+ + ++ +E E A++ + L +V + ++ L+ + E S
Sbjct: 487 SLVEESSAVIERSQELEGAVSRISEFTSVLEHEVTVCQDLLD----GKADLEKFIQEFSL 542
Query: 105 AADEANRMCKVLENRSQQDEER---MDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDE 161
+ K L++ S + E L + KE E A +L ++ E
Sbjct: 543 TLEWVVNQEKSLQDVSVEASEIKKNFLGLKSSEKEINSPDEVKGAVCISTLEELETLKSE 602
Query: 162 LEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEA 221
E + + + E + +L+ L+ L+ + + + + Q+K + +
Sbjct: 603 KENLDGELSKCKDDLEESKNKLQETEKKLEELKSELDASQESNSLAETQLKCMVESYESL 662
Query: 222 EARAEFAEKTVKKLQKEVDRLEDEL 246
E RA+ E K LQ+++ LEDEL
Sbjct: 663 ELRAKDLEAEHKSLQEKISSLEDEL 687
>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant
protein, PEP-CTERM locus subfamily. Members of this
protein family belong to the family of polysaccharide
chain length determinant proteins (pfam02706). All are
found in species that encode the PEP-CTERM/exosortase
system predicted to act in protein sorting in a number
of Gram-negative bacteria, and are found near the epsH
homolog that is the putative exosortase gene [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 498
Score = 29.2 bits (66), Expect = 2.8
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 22/144 (15%)
Query: 125 ERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSG-DAKIMELEEEL 183
+ + +L+ ARL +A A+ D + R+L E L S D +I LE++L
Sbjct: 204 SEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQL 263
Query: 184 K------------VVG-----NSLKSLEVSEEKA----NQRVEEYKRQIKQLAVKLKEAE 222
V+ L+ + E A +R E +QL ++L EAE
Sbjct: 264 DALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAE 323
Query: 223 ARAEFAEKTVKKLQKEVDRLEDEL 246
A E V +L ++RLE L
Sbjct: 324 AEIASLEARVAELTARIERLESLL 347
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation,
ribosomal structure and biogenesis].
Length = 363
Score = 28.7 bits (65), Expect = 2.9
Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 13/94 (13%)
Query: 166 EDRVKSGDAKIMELEEEL---KVVGNSLKSLEVSEEKAN-QRVEEYKRQIKQLAVKLKEA 221
++++S + ELE L +V+ + + ++S+E A + + E R+ K+ L++A
Sbjct: 6 LEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDA 65
Query: 222 EARA---------EFAEKTVKKLQKEVDRLEDEL 246
+ E AE+ +K+L+ +++ LE+EL
Sbjct: 66 KEMLAEEKDPEMREMAEEEIKELEAKIEELEEEL 99
>gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein;
Provisional.
Length = 1109
Score = 29.3 bits (66), Expect = 2.9
Identities = 37/169 (21%), Positives = 81/169 (47%), Gaps = 9/169 (5%)
Query: 81 IEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMD---QLTNQLKEA 137
I ++LE+++ A A++ EA Q+A K R++Q ++ +D +L+ +L++
Sbjct: 28 ITQELEQAKAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQ- 86
Query: 138 RLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSE 197
+L E + +S + +E E+ ++ + + ++ + + +SL L +
Sbjct: 87 QLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQ 146
Query: 198 EKANQRVEEYKRQIKQLAVK---LKEAEARAEFAEKTVKKLQKEVDRLE 243
+A +++ E +R+++ L L +A+ A AE K VD LE
Sbjct: 147 TEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKAL--VDELE 193
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 28.4 bits (64), Expect = 3.0
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 188 NSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDEL 246
L+ L+ E+ QR+ E + QI++L +E E R E E+ +K+L+KE+ +L+ EL
Sbjct: 69 TRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEE-LKQLEKELKKLKAEL 126
>gnl|CDD|176962 CHL00019, atpF, ATP synthase CF0 B subunit.
Length = 184
Score = 28.3 bits (64), Expect = 3.1
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 18/109 (16%)
Query: 116 LENRSQ------QD-EERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDR 168
L+NR Q ++ EER ++ +L++AR A+ ++DE+ R + E E E+
Sbjct: 53 LDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEI-RVNGYSEIE-REKENL 110
Query: 169 VKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVK 217
+ + LE +++ +++A + + ++Q+ QLA++
Sbjct: 111 INQAKEDLERLEN------YKNETIRFEQQRA---INQVRQQVFQLALQ 150
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 28.9 bits (66), Expect = 3.2
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 149 DEVSRKLAFVEDELEVAEDRVKSGDAKIMELE---EELKVVGNSLKSLEVSEEKAN-QRV 204
+ V LA L+V D + D + EL+ EEL+ N+L S E+ + K +
Sbjct: 12 EAVKEALAKRGFPLDV--DELLELDEERRELQTELEELQAERNAL-SKEIGQAKRKGEDA 68
Query: 205 EEYKRQIKQLAVKLKEAEARAEFAEKTVKKL 235
E ++K+L ++K EA + E +++L
Sbjct: 69 EALIAEVKELKEEIKALEAELDELEAELEEL 99
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria [DNA
metabolism, Restriction/modification].
Length = 650
Score = 28.9 bits (65), Expect = 3.2
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 158 VEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEE----YKRQIKQ 213
+ E+E E +K K +L +E+ + N L+ + S E ++ + +Q
Sbjct: 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQ 266
Query: 214 LAVKLKEAEARAEFAEKTVKKL 235
L +LKE EA + +++L
Sbjct: 267 LERQLKEIEAARKANRAQLREL 288
Score = 27.3 bits (61), Expect = 9.5
Identities = 38/191 (19%), Positives = 76/191 (39%), Gaps = 25/191 (13%)
Query: 48 KNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKS--EERSGTATAKLAEASQA 105
+ ++LEER+K L + ++A V+ I +L + + + S+
Sbjct: 316 QQNQLTQEELEERDKELLESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSEL 375
Query: 106 ADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVA 165
+ + + ++ Q + ++ LKE R L E+ EV +K++ + E ++A
Sbjct: 376 T-QLEVLIQQVKRELQDAKSQL------LKELRELEEELA----EVDKKISTIPSEEQIA 424
Query: 166 EDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARA 225
+ L EEL N L E E+ +++E K I+ L L E +
Sbjct: 425 Q------------LLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQK 472
Query: 226 EFAEKTVKKLQ 236
A + + +
Sbjct: 473 INAFELERAIT 483
>gnl|CDD|227608 COG5283, COG5283, Phage-related tail protein [Function unknown].
Length = 1213
Score = 29.1 bits (65), Expect = 3.3
Identities = 37/243 (15%), Positives = 86/243 (35%), Gaps = 22/243 (9%)
Query: 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEER 60
M+ KK + +K E + ++ N + + E L + A + L +
Sbjct: 66 MEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQ 125
Query: 61 EKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQ-----------AADEA 109
+K + + ++ LN+ + LE++ + GTA AK+ + +
Sbjct: 126 QKEIQRLQYAISTLNKSMAAQARLLEQTGNKFGTADAKVVGLRESFGRQTEALNKQLERT 185
Query: 110 NRMCKVL-ENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLA---FVEDELEVA 165
++ L + ++ L+ +L+ + S ++ ++L L +
Sbjct: 186 KKVADALTYVLDEAQQKLSQALSARLERLQESRTQMSQSSGQLGKRLETDKAGAGALGLL 245
Query: 166 EDRVKSGDAKIM-------ELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKL 218
+ A I ++ EL +K + K + EE I++ A +
Sbjct: 246 GAALAGSFAAIGAAVRRTAQMNGELMDKTKQVKGARDNLGKVTSQGEEMSDAIQETAEHI 305
Query: 219 KEA 221
K++
Sbjct: 306 KDS 308
>gnl|CDD|221431 pfam12127, YdfA_immunity, SigmaW regulon antibacterial. This
protein is found in bacteria. Proteins in this family
are about 330 amino acids in length. The operon from
which this protein is derived confers immunity for the
host species to a broad range of antibacterial
compounds, unlike the specific immunity proteins that
are linked to and co-regulated with their
antibiotic-synthesis proteins.
Length = 318
Score = 28.8 bits (65), Expect = 3.3
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 2 DAIKKKMQAMKMEKDSA-----MDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKD 56
D+I K + ++ +A +D AD G+ A L+ D+ E D K + QA
Sbjct: 193 DSISKTVLEKGLDAGTAFEILSIDIADIDVGENIGARLQTDQAEAD-----KRIAQA--K 245
Query: 57 LEEREKALAAAESEVAALNRKVQ 79
EER A E E+ A ++++
Sbjct: 246 AEERRAMAVAREQEMKAKVQEMR 268
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 28.7 bits (65), Expect = 3.3
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 35 RADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQ-MIEEDLEKSEERSG 93
R + E LD ++LD+ ++LE++EK L+ E + +++ +I E E+ E SG
Sbjct: 84 RLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISG 143
Score = 28.7 bits (65), Expect = 3.7
Identities = 32/167 (19%), Positives = 72/167 (43%), Gaps = 16/167 (9%)
Query: 95 ATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLK-EARLLAEDADAKSDEVSR 153
A KL A + A +++E ++ E + + K E L + + + E
Sbjct: 23 AEKKLGSAEELAK------RIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRN 76
Query: 154 KLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSL----KSLEVSEEKANQRVEEYKR 209
+L +E L E+ + + + EE L+ L K+L+ EE+ + + E +
Sbjct: 77 ELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQRE 136
Query: 210 QIKQLAVKLKEAEARAEFAEKTVKKLQKE----VDRLEDELGLNKDR 252
++++++ L + EA+ E+ ++ + E + +E+E D+
Sbjct: 137 ELERIS-GLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADK 182
Score = 28.0 bits (63), Expect = 6.1
Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 19/153 (12%)
Query: 37 DKVEVDLDTTKKNL-----DQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEER 91
++ + + +T KK ++ K E E+ L +E+ L R++ EE L++ E
Sbjct: 39 EEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMES 98
Query: 92 SGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEV 151
L + + L N+ + +E+ ++L + E R E + E
Sbjct: 99 LDKKEENLEKKEKE----------LSNKEKNLDEKEEELEELIAEQREELERISGLTQEE 148
Query: 152 SRKLAFVEDELEVAEDRVKSGDAKIMELEEELK 184
++++ E E E + K I E+EEE K
Sbjct: 149 AKEILLEEVEEEARHEAAK----LIKEIEEEAK 177
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 28.8 bits (64), Expect = 3.4
Identities = 43/222 (19%), Positives = 89/222 (40%)
Query: 47 KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAA 106
K +K+ E E+ + ++ +++E L +E ++ +L + +
Sbjct: 209 KALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEIL 268
Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
+ + K E + EE + L + +E + + + + KL E EL+ E
Sbjct: 269 AQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLE 328
Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
+K +I ELE+ELK + ++ E EE+ + E+ ++ ++L K K R
Sbjct: 329 KELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLS 388
Query: 227 FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELA 268
A K ++ + + E E L + + D + E
Sbjct: 389 SAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEEL 430
>gnl|CDD|236560 PRK09549, mtnW, 2,3-diketo-5-methylthiopentyl-1-phosphate enolase;
Reviewed.
Length = 407
Score = 28.8 bits (65), Expect = 3.6
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 127 MDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEE 182
+D L QL++ L D K DE+ E+ L E R+ +G + E+ E
Sbjct: 149 LDYLKEQLRDQALGGVDL-VKDDEI-----LFENALTPFEKRIVAGKEVLQEVYET 198
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 28.8 bits (65), Expect = 4.0
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 178 ELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQK 237
E E+ LK + + LK K + +EE K K+L +LK+ A AE A+ +
Sbjct: 712 EQEDLLKEIASLLKVPPELLPKVERLLEELKELEKELE-RLKKKLAAAELADLLSNAKAE 770
Query: 238 EV 239
E+
Sbjct: 771 EI 772
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 28.5 bits (64), Expect = 4.2
Identities = 26/130 (20%), Positives = 55/130 (42%), Gaps = 7/130 (5%)
Query: 114 KVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGD 173
+++E + + ++ L + + L + + E + +V+ ++ +
Sbjct: 907 EIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELN---KLHEVE 963
Query: 174 AKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVK 233
+K+ E EE + LK + + N+ E K K+LA K+ A E + K +K
Sbjct: 964 SKLKETSEEY---EDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQE-STKQLK 1019
Query: 234 KLQKEVDRLE 243
+L EV L+
Sbjct: 1020 ELPVEVAELQ 1029
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
Length = 900
Score = 28.7 bits (65), Expect = 4.4
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 170 KSGDA---KIMELEEELKVVGNSLKSLEVSEEKANQRVE-------EYKRQIKQLAVKLK 219
+GDA I ELE+ LK + + L V E+ + VE E K++I++L +L
Sbjct: 729 AAGDAAVEYIQELEDLLK---EAAEILGVPPEQLPKTVERFFEEWKEQKKEIEKLRKELA 785
Query: 220 EAEARAEFAEK-TVKKLQKEVDRLEDELGLNKDRYKSLADE 259
E A ++ V ++ V+ ++ + + LA E
Sbjct: 786 ELLASELLSKAEEVGGVKVVVEEVDADEDELRKIANELAKE 826
>gnl|CDD|225325 COG2605, COG2605, Predicted kinase related to galactokinase and
mevalonate kinase [General function prediction only].
Length = 333
Score = 28.1 bits (63), Expect = 4.5
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 178 ELEEELKVV--GNSLKSLEVSEEKAN------QRVEEYKRQIKQLAVKLKEAEARAEFAE 229
ELE L + G + +S EV E++ + E ++K LA ++K+A R + E
Sbjct: 185 ELEARLLLYYTGITRQSSEVIEDQVRNVVDGDEETLEALHEMKALAYEMKDALVRNDIPE 244
>gnl|CDD|217752 pfam03833, PolC_DP2, DNA polymerase II large subunit DP2.
Length = 852
Score = 28.6 bits (64), Expect = 4.6
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 17/96 (17%)
Query: 124 EERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAED---RVK-----SGDAK 175
E ++L +++ A +AE A + + + K+ E+ +A+D RV+ SG A+
Sbjct: 1 ESYFEKLEDEVDRAYEIAEAARERGLDPTDKV-----EIPLAKDMAERVEGLVGPSGVAE 55
Query: 176 -IMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQ 210
I ELE+E+ +LE++ E + + R+
Sbjct: 56 RIRELEKEM---SREEAALEIAAEIVEGKFGDNDRE 88
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 28.7 bits (64), Expect = 4.7
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 176 IMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKL 235
IM+ E V GN L EV K + + ++ I + K AE E EK +KK
Sbjct: 65 IMKSFVENDVYGNQLLHKEVDVTKLD--GNDRQKFIDMV---FKVAE---EDNEKFLKKF 116
Query: 236 QKEVDRLEDELGLNKDRYKSLADEMD 261
+ +DR+ +L + R++ L E D
Sbjct: 117 RNRIDRVGIKLPTVEVRFEHLTVEAD 142
>gnl|CDD|203138 pfam04977, DivIC, Septum formation initiator. DivIC from B.
subtilis is necessary for both vegetative and
sporulation septum formation. These proteins are mainly
composed of an amino terminal coiled-coil.
Length = 80
Score = 26.4 bits (59), Expect = 4.8
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 208 KRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLE----DELGLNKD 251
++I L +L + +A E E VK L+ + D +E ELGL+K
Sbjct: 23 NQEIAALQAELAKLKAENEELEAEVKDLKSDPDYIEERARSELGLSKP 70
>gnl|CDD|222255 pfam13600, DUF4140, N-terminal domain of unknown function
(DUF4140). This family is often found at the N-terminus
of its member proteins, with DUF4139, pfam13598, at the
C-terminus.
Length = 101
Score = 26.9 bits (60), Expect = 5.0
Identities = 11/59 (18%), Positives = 25/59 (42%)
Query: 178 ELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQ 236
++ S++ + +E + + E + +++ L +L EA E E +K L
Sbjct: 43 SGPGNATILSVSVRRDYLPDEATSPALAELEEELRALEDELAALEAEKEALEAQIKFLS 101
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 28.4 bits (63), Expect = 5.2
Identities = 37/179 (20%), Positives = 74/179 (41%), Gaps = 20/179 (11%)
Query: 74 LNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRS---QQDEERMDQL 130
L + + T L E Q A + ++ K L + + D + +
Sbjct: 258 LKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENY 317
Query: 131 TNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSL 190
N +K+ KS E KL ++ E+E+ E+ +K+ + I EL ++L+ G S
Sbjct: 318 VNAMKQ----------KSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGIST 367
Query: 191 KSLEV---SEEKANQRVEEYKRQIKQLAVKLK----EAEARAEFAEKTVKKLQKEVDRL 242
+ E+ EK + +++ Q +L +K EA+ + EKT+++ + +
Sbjct: 368 EQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNI 426
>gnl|CDD|224370 COG1453, COG1453, Predicted oxidoreductases of the aldo/keto
reductase family [General function prediction only].
Length = 391
Score = 28.1 bits (63), Expect = 5.6
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 129 QLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGN 188
L N ++ L A K L ++ EV V SG +LEE LK+
Sbjct: 210 LLYNVPEKLEELCRPASPKRSPAEWALRYLLSHPEV--TTVLSGMNTPEQLEENLKIASE 267
Query: 189 SLKSLEVSEEKANQRVEEYKRQIKQ 213
SL E + ++VEE R+ +
Sbjct: 268 LEPSLTEEELQILEKVEEIYRESLK 292
>gnl|CDD|149105 pfam07851, TMPIT, TMPIT-like protein. A number of members of this
family are annotated as being transmembrane proteins
induced by tumour necrosis factor alpha, but no
literature was found to support this.
Length = 330
Score = 27.8 bits (62), Expect = 5.9
Identities = 13/65 (20%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 178 ELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEK-TVKKLQ 236
+L+E ++ L+ +E +E+ + ++++KQL V LK+ + + V++L+
Sbjct: 15 QLQETHRLYKQKLEEVEKLQEQCTSAIARQRKRLKQLIVSLKKLKKSLTPEDSELVEQLE 74
Query: 237 KEVDR 241
+++
Sbjct: 75 EQIKE 79
>gnl|CDD|224482 COG1566, EmrA, Multidrug resistance efflux pump [Defense
mechanisms].
Length = 352
Score = 28.1 bits (63), Expect = 6.1
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 12/122 (9%)
Query: 57 LEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVL 116
LE+ E ALAAAE+++ L ++ + + ++E + QA +E R L
Sbjct: 93 LEQAEAALAAAEAQLRNLRAQLASAQALIAQAEA---------QDLDQAQNELERR-AEL 142
Query: 117 ENRSQQDEERMDQLTNQLK--EARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDA 174
R E +D+ L+ EA L A A K + + + +VA A
Sbjct: 143 AQRGVVSREELDRARAALQAAEAALAAAQAAQKQNLALLESEVSGAQAQVASAEAALDQA 202
Query: 175 KI 176
K+
Sbjct: 203 KL 204
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated.
Length = 359
Score = 27.7 bits (63), Expect = 6.2
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 20/112 (17%)
Query: 80 MIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDE-----ERMDQLTNQL 134
+ + LE EER A L++ +D R K+ + ++ + Q L
Sbjct: 3 SMLDKLEALEERYEELEALLSDPEVISD-QKRFRKLSKEYAELEPIVEAYREYKQAQEDL 61
Query: 135 KEAR-LLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKV 185
+EA+ +L E++D + E+A++ +K + ++ ELEEELK+
Sbjct: 62 EEAKEMLEEESDP-------------EMREMAKEELKELEERLEELEEELKI 100
>gnl|CDD|221059 pfam11285, DUF3086, Protein of unknown function (DUF3086). This
family of proteins with unknown function appears to be
restricted to Cyanobacteria.
Length = 283
Score = 27.7 bits (62), Expect = 6.4
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 50 LDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKS 88
+++A+KDLE+R +AL E E+ L R+ + IE++L S
Sbjct: 2 VEEALKDLEQRRQAL---EIEIEKLERRKEQIEQELRTS 37
>gnl|CDD|223435 COG0358, DnaG, DNA primase (bacterial type) [DNA replication,
recombination, and repair].
Length = 568
Score = 27.8 bits (62), Expect = 6.8
Identities = 17/119 (14%), Positives = 35/119 (29%), Gaps = 1/119 (0%)
Query: 135 KEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIME-LEEELKVVGNSLKSL 193
++A A D V + + D + E K G + + L E + L
Sbjct: 304 RKAAKRALQLVLPLDFVGVFVILLPDGKDPDELIRKEGAEALRKKLPNERLPLIEFLIEY 363
Query: 194 EVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDR 252
+ + + L + + R + +K + L D L + +
Sbjct: 364 LIPSNLDTEGKARLVEEAVPLIKVIPDEVLRDYYLQKLAELLGISDDALLQLQVQPEKK 422
>gnl|CDD|218559 pfam05335, DUF745, Protein of unknown function (DUF745). This
family consists of several uncharacterized Drosophila
melanogaster proteins of unknown function.
Length = 188
Score = 27.3 bits (61), Expect = 6.9
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 61 EKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRS 120
+KAL AA++ AAL K Q+ +E+ E+ A A + E SQ+ ++ + +
Sbjct: 49 DKALQAAKAAEAALAGKQQL----VEQLEQEVREAEAVVEEESQSLQQSEANATAAQAAA 104
Query: 121 QQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKS 171
QQ + +++ L LK A+ E+ + + ++LA LE A+ RV+
Sbjct: 105 QQAQTQVNTLKALLKNAQANLENIEQVASGAQQELAEKTQLLEAAKRRVEV 155
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 28.0 bits (62), Expect = 7.0
Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 16/152 (10%)
Query: 10 AMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAES 69
A + D +D ++D E + + +++ KD E + +E
Sbjct: 3824 AEDITNTLNEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEE 3883
Query: 70 EVAALNRKVQMIEEDL----------EKSEERSGTATAKLAEASQAADEANRMCKVLENR 119
E L+ +V I EDL E +EE K E S A +E++ + K +N+
Sbjct: 3884 ENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNK 3943
Query: 120 SQQDEERMDQLTNQLKEARLLAEDADAKSDEV 151
+ +D++R Q KE D DE+
Sbjct: 3944 ALEDKDR------QEKEDEEEMSDDVGIDDEI 3969
>gnl|CDD|218602 pfam05478, Prominin, Prominin. The prominins are an emerging
family of proteins that among the multispan membrane
proteins display a novel topology. Mouse prominin and
human prominin (mouse)-like 1 (PROML1) are predicted to
contain five membrane spanning domains, with an
N-terminal domain exposed to the extracellular space
followed by four, alternating small cytoplasmic and
large extracellular, loops and a cytoplasmic C-terminal
domain. The exact function of prominin is unknown
although in humans defects in PROM1, the gene coding for
prominin, cause retinal degeneration.
Length = 807
Score = 28.1 bits (63), Expect = 7.1
Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 32/142 (22%)
Query: 120 SQQDEERMDQLTNQLKE----ARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKS---- 171
+Q + + +KE R D + D V + + +D+V
Sbjct: 165 NQYTQTGVKNSPTTMKEGVDDLRTYLNDTPQQIDHV------LAQNYQETQDQVSKDLDG 218
Query: 172 -GDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEK 230
G+ + +ELK + L LE I +L L+E + E K
Sbjct: 219 AGEHLGGRIHDELK--SHVLPVLE---------------AIVELGQVLQEMKDGLESVNK 261
Query: 231 TVKKLQKEVDRLEDELGLNKDR 252
T+K+L++ +L D L + R
Sbjct: 262 TLKELREGGSQLRDGLRGVRRR 283
>gnl|CDD|173953 cd08194, Fe-ADH6, Iron-containing alcohol dehydrogenases-like.
Iron-containing alcohol dehydrogenase-like. Proteins of
this family have not been characterized. Their specific
function is unknown. The protein structure represents a
dehydroquinate synthase-like fold and belongs to the
alcohol dehydrogenase-like superfamily. They are
distinct from other alcohol dehydrogenases which contain
different protein domains. Alcohol dehydrogenase
catalyzes the reduction of acetaldehyde to alcohol with
NADP as cofactor. Its activity requires iron ions.
Length = 375
Score = 27.6 bits (62), Expect = 7.3
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 219 KEAEARAEFAEKTVKKLQKEVDRLE----DELGLNKDRYKSLADEM 260
E ++ E AEK ++ L++ LE E G++KD + +L +M
Sbjct: 303 NEGDSDREAAEKLIEALKELNRELEVPTLREYGIDKDAFMALIPKM 348
>gnl|CDD|164789 PHA00327, PHA00327, minor capsid protein.
Length = 187
Score = 27.4 bits (60), Expect = 7.7
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 187 GNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVD 240
N ++S S + E KR +L L+E F + E D
Sbjct: 97 NNPVESGLNSALAVQRLTYERKRMQAELQ-NLREQNRLINFNSAVREGYLAERD 149
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 27.7 bits (62), Expect = 7.8
Identities = 45/266 (16%), Positives = 89/266 (33%), Gaps = 24/266 (9%)
Query: 2 DAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEERE 61
+ ++ AD A+ L E L + KDL E E
Sbjct: 166 LKNPYEQSEEDFKELQLNSGADIVRLLARFLGLGGLLAEELLSRAGLDKKVPAKDLFEEE 225
Query: 62 KALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEA-SQAADE----------AN 110
E K +D + + A A L + ++A DE A+
Sbjct: 226 IKKVREALEELLNPLKPNYYYKDEKYLDVVPLKAYADLEKLFNEALDEKFERDKIKQLAS 285
Query: 111 RMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDEL-EVAEDRV 169
+ K LE ++ E ++++ ++L+E AE+ K + + L +E+ L V
Sbjct: 286 ELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEEGLKSVRLADF 345
Query: 170 KSGDAKIMELEE---------ELKVVGNSLKSLEVS---EEKANQRVEEYKRQIKQLAVK 217
+ +EL++ LK +V+ + + Y K K
Sbjct: 346 YGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEK 405
Query: 218 LKEAEARAEFAEKTVKKLQKEVDRLE 243
+ +A E E+ +++ + + +
Sbjct: 406 AEGKKAIEEIREELIEEGLLKSKKKK 431
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 27.2 bits (61), Expect = 7.8
Identities = 15/75 (20%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 191 KSLEVSEEKAN--QRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRL-EDELG 247
K+L+ + K+ Q +++ + + ++L ++ E EA+ E EK ++ ++ ++ DE+
Sbjct: 114 KALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIA 173
Query: 248 LNKDRYKSLADEMDS 262
K + + L +++
Sbjct: 174 FLKKQNQQLKSQLEQ 188
>gnl|CDD|163506 TIGR03794, NHLM_micro_HlyD, NHLM bacteriocin system secretion
protein. Members of this protein family are homologs of
the HlyD membrane fusion protein of type I secretion
systems. Their occurrence in prokaryotic genomes is
associated with the occurrence of a novel class of
microcin (small bacteriocins) with a leader peptide
region related to nitrile hydratase. We designate the
class of bacteriocin as Nitrile Hydratase Leader
Microcin, or NHLM. This family, therefore, is designated
as NHLM bacteriocin system secretion protein. Some but
not all NHLM-class putative microcins belong to the TOMM
(thiazole/oxazole modified microcin) class as assessed
by the presence of the scaffolding protein and/or
cyclodehydratase in the same gene clusters [Transport
and binding proteins, Amino acids, peptides and amines,
Cellular processes, Biosynthesis of natural products].
Length = 421
Score = 27.5 bits (61), Expect = 7.9
Identities = 34/168 (20%), Positives = 61/168 (36%), Gaps = 27/168 (16%)
Query: 47 KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEA---- 102
+++ ++ + LEE L AAL+R+V L + +
Sbjct: 127 ERHFQKSKEALEETIGRLREEL---AALSREVGKQRGLLSRGLATFKRDRILQQQWREEQ 183
Query: 103 --SQAADEANRMCKVLENRSQQ--DEERMDQLTNQLKEARLLA--------EDADAKSDE 150
AAD+A Q DE ++ + L +A E +A+ E
Sbjct: 184 EKYDAADKAR-----AIYALQTKADERNLETVLQSLSQADFQLAGVAEKELETVEARIKE 238
Query: 151 VSRKLAFVEDELEVAEDRVKSGDAKIMEL---EEELKVVGNSLKSLEV 195
++ +E++L + V +++EL +L G L SLEV
Sbjct: 239 ARYEIEELENKLNLNTRIVSQHSGRVIELNYTPGQLVAAGAPLASLEV 286
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 27.7 bits (62), Expect = 7.9
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 195 VSEEKANQRVEEYKRQIKQLAVKLK----EAEARAEFAEKTVKKLQKEVDRLEDELGLNK 250
V+ A + + E + ++K+LA LK E + E + K LQKE++ L+ ++ K
Sbjct: 694 VTGNAAIEYLNEQEDKLKELADILKVTPNELPKKIERFFEEWKALQKELESLKLKIADQK 753
Query: 251 DRYKSLADEMDSTFAELAGY 270
DE+ + G
Sbjct: 754 ------IDELKDKAETINGV 767
>gnl|CDD|217077 pfam02514, CobN-Mg_chel, CobN/Magnesium Chelatase. This family
contains a domain common to the cobN protein and to
magnesium protoporphyrin chelatase. CobN is implicated
in the conversion of hydrogenobyrinic acid a,c-diamide
to cobyrinic acid. Magnesium protoporphyrin chelatase is
involved in chlorophyll biosynthesis.
Length = 1079
Score = 27.9 bits (63), Expect = 7.9
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 178 ELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLK-EAEARAEFAEKTVKKLQ 236
L EL + + ++ R E + +I +LA +L + + +F E
Sbjct: 497 GLYGELAELEELIDEYREADGLDPARREALREEILELAEELGLDRDLGEDFEE------- 549
Query: 237 KEVDRLEDEL 246
++RL D L
Sbjct: 550 -FLERLHDYL 558
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 27.7 bits (61), Expect = 8.5
Identities = 33/177 (18%), Positives = 65/177 (36%), Gaps = 2/177 (1%)
Query: 51 DQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEAN 110
+A ++ E K +E E+ A + Q E ++E E T + EA
Sbjct: 665 GEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAE 724
Query: 111 RMCKVLENRSQQD-EERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRV 169
E + ++ EE D+ + + + + D K E + E E E +
Sbjct: 725 GTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDE-DEGEI 783
Query: 170 KSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
++G+ M+ +E + E E+ ++ E + ++ + E E AE
Sbjct: 784 QAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAE 840
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 27.3 bits (61), Expect = 8.5
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 159 EDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKL 218
EL+ A++++K +IM ++L+ + L+ LE E + E +I + KL
Sbjct: 203 PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262
Query: 219 KEAEARAEFAEKTVKKLQKEVDRLEDELGLN 249
++ F K ++KL++++ L+ G
Sbjct: 263 EQ---CRGFTFKEIEKLKEQLKLLQSLTGWK 290
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 27.6 bits (62), Expect = 8.8
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 19/80 (23%)
Query: 206 EYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEV-------------------DRLEDEL 246
E K ++K+L +LKE E E +K +KKL K+ ++L +EL
Sbjct: 331 ELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEEL 390
Query: 247 GLNKDRYKSLADEMDSTFAE 266
++ K L +E++S ++E
Sbjct: 391 EELEEELKELKEELESLYSE 410
>gnl|CDD|221371 pfam12004, DUF3498, Domain of unknown function (DUF3498). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 433 to 538 amino acids in length. This domain is
found associated with pfam00616, pfam00168. This domain
has two conserved sequence motifs: DLQ and PLSFQNP.
Length = 489
Score = 27.4 bits (60), Expect = 8.9
Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 4/45 (8%)
Query: 200 ANQRVEEYKR----QIKQLAVKLKEAEARAEFAEKTVKKLQKEVD 240
+ +R+EEY+R Q +Q+ L+E +AR E +E+ +++ Q+E D
Sbjct: 382 SVRRLEEYERRLLGQEQQMQKLLQEYQARLEDSEERLRRQQEEKD 426
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 27.5 bits (61), Expect = 9.1
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
Query: 107 DEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAE 166
+ + + E ++ + +L +Q E E D++ DE+ ++ + DELE E
Sbjct: 32 ERLDSELRDAEKERDTYKQYLSKLESQNVEISN-YEALDSELDELKKEEERLLDELEELE 90
Query: 167 DRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
D +++EL+EE + LE E + + + R QL L+ E + E
Sbjct: 91 KEDDDLDGELVELQEE-------KEQLENEELQYLREYNLFDRNNLQLEDNLQSLELQYE 143
Query: 227 FAEKTVKKLQK 237
++ + KL+K
Sbjct: 144 YSLNQLDKLRK 154
>gnl|CDD|224202 COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and
metabolism].
Length = 533
Score = 27.6 bits (62), Expect = 9.1
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 103 SQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLA 156
+ AA E R+ +E ++ E ++ ++KE R L + D +E+ LA
Sbjct: 334 ANAAREVLRLGDSIEQMLERLYEYIEGDAKKVKEIRKLEDAVDRLYEEIKLYLA 387
>gnl|CDD|237117 PRK12493, PRK12493, magnesium chelatase subunit H; Provisional.
Length = 1310
Score = 27.6 bits (62), Expect = 9.2
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 49 NLDQAVKDLEEREKALAAAESE--VAALNRKVQMIEEDL 85
NLD+ V E L E + V AL R++ IE L
Sbjct: 702 NLDKDVDLPETDAAELDEEERDAYVGALYRELMEIESRL 740
>gnl|CDD|220735 pfam10408, Ufd2P_core, Ubiquitin elongating factor core. This is
the most conserved part of the core region of Ufd2P
ubiquitin elongating factor or E4, running from helix
alpha-11 to alpha-38. It consists of 31 helices of
variable length connected by loops of variable size
forming a compact unit; the helical packing pattern of
the compact unit consists of five structural repeats
that resemble tandem Armadillo (ARM) repeats. This
domain is involved in ubiquitination as it binds Cdc48p
and escorts ubiquitinated proteins from Cdc48p to the
proteasome for degradation. The core is structurally
similar to the nuclear transporter protein
importin-alpha. The core is associated with the U-box at
the C-terminus, pfam04564, which has ligase activity.
Length = 625
Score = 27.2 bits (61), Expect = 9.6
Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 190 LKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRL 242
L++L + ++ + R++K+L +L+E E + K+L+K+++ L
Sbjct: 176 LRALHLGIGPLIEKYKRLLRELKRLQDELEELEQSRSNWAQL-KRLEKQLEIL 227
>gnl|CDD|213368 cd12834, ZntB_u1, Uncharacterized bacterial subgroup of the
Salmonella typhimurium Zn2+ transporter ZntB-like
subfamily. The MIT superfamily of essential membrane
proteins is involved in transporting divalent cations
(uptake or efflux) across membranes. The ZntB-like
subfamily includes the Zn2+ transporter Salmonella
typhimurium ZntB which mediates the efflux of Zn2+ (and
Cd2+). Structures of the intracellular domain of Vibrio
parahaemolyticus and Salmonella typhimurium ZntB form
funnel-shaped homopentamers, the tip of the funnel is
formed from two C-terminal transmembrane (TM) helices
from each monomer, and the large opening of the funnel
from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport through Salmonella typhimurium CorA, and
Mrs2p. Natural variants such as GVN and GIN which occur
in proteins belonging to this subfamily, may be
associated with the transport of different divalent
cations, such as zinc and cadmium. The functional
diversity of MIT transporters may also be due to minor
structural differences regulating gating, substrate
selection, and transport.
Length = 290
Score = 27.2 bits (61), Expect = 9.7
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 25/135 (18%)
Query: 137 ARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVS 196
LL E AD S V R+L DEL+ EDR+ L L+ L +L
Sbjct: 110 EHLLREQADTLSRIV-RELT---DELDRIEDRL---------LSGRLRRERRELGALR-- 154
Query: 197 EEKANQRVEEYKRQIKQLAVKLKEAEARA-----EFAEKTVKKLQKEVDRLEDELGLNKD 251
+R+ R + L R + +T+++L + +D L+ +L ++
Sbjct: 155 -----RRLVRLHRLLAPEPAALFRLLRRPPDWLPDADLETLRRLTERLDALDRDLVALQE 209
Query: 252 RYKSLADEMDSTFAE 266
R + L +E+ + AE
Sbjct: 210 RARLLQEEIAARLAE 224
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 27.2 bits (61), Expect = 10.0
Identities = 40/190 (21%), Positives = 63/190 (33%), Gaps = 23/190 (12%)
Query: 59 EREKALAAAESEVAALNRKVQM---IEEDLEKSEERSGTATAKLAEASQAADEANRMCKV 115
EREKA A + AA R + + L + + + AT + + A + + +
Sbjct: 463 EREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAA 522
Query: 116 LENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVS-------RKLAFVEDELEVAEDR 168
E R Q R + A AD K V+ K A + AE+
Sbjct: 523 REARKAQARARQAEKQA--------AAAADPKKAAVAAAIARAKAKKAAQQAANAEAEEE 574
Query: 169 VKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFA 228
V A + K K A + + K+ AV A A+A+ A
Sbjct: 575 VDPKKAAVAAAIARAK-----AKKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKA 629
Query: 229 EKTVKKLQKE 238
E+ +E
Sbjct: 630 EQQANAEPEE 639
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.304 0.121 0.296
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,143,831
Number of extensions: 1308465
Number of successful extensions: 4893
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3497
Number of HSP's successfully gapped: 1188
Length of query: 270
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 175
Effective length of database: 6,723,972
Effective search space: 1176695100
Effective search space used: 1176695100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 58 (26.2 bits)