RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1411
(270 letters)
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 76.8 bits (189), Expect = 5e-16
Identities = 36/258 (13%), Positives = 102/258 (39%)
Query: 5 KKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKAL 64
++ + +K + E + ++ R+ +++ + ++ + + LEE E A
Sbjct: 912 EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAAR 971
Query: 65 AAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDE 124
+ E + K++ +E+D+ E+++ T + + + E +++
Sbjct: 972 QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031
Query: 125 ERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELK 184
+ ++ + + E + + + E+ + +E E +++ A+I EL+ +L
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091
Query: 185 VVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLED 244
L++ E + ++I++L + + + E + K +K+ L +
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSE 1151
Query: 245 ELGLNKDRYKSLADEMDS 262
EL K + D +
Sbjct: 1152 ELEALKTELEDTLDTTAT 1169
Score = 76.4 bits (188), Expect = 7e-16
Identities = 40/275 (14%), Positives = 111/275 (40%), Gaps = 10/275 (3%)
Query: 3 AIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKV---EVDLDTTKKNLDQAVKDLEE 59
+++K + EK+ +K +A ++ + +L+ ++ +++ EE
Sbjct: 882 ELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEE 941
Query: 60 REKALAAA----ESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKV 115
R + L A + ++ L +++ E +K + TA K+ +
Sbjct: 942 RSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
Query: 116 LENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAK 175
L + EER+ LT L E A++ ++ ++ +E L+ E + +
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061
Query: 176 IMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKL 235
+LE E + + L+ + ++ + + +++ +L++ ++ A K +++L
Sbjct: 1062 KRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIREL 1121
Query: 236 QKEVDRLEDELG---LNKDRYKSLADEMDSTFAEL 267
+ + L+++L +++ + ++ L
Sbjct: 1122 ESHISDLQEDLESEKAARNKAEKQKRDLSEELEAL 1156
Score = 71.8 bits (176), Expect = 2e-14
Identities = 49/230 (21%), Positives = 96/230 (41%), Gaps = 7/230 (3%)
Query: 46 TKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAK------- 98
TK+ +A +L+E E+ E L K+Q E ++EE AK
Sbjct: 869 TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEI 928
Query: 99 LAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFV 158
L E +E + L+ ++ +++M L QL+E + + K+ +
Sbjct: 929 LHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKM 988
Query: 159 EDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKL 218
ED++ + ED+ + LEE + + +L E + + +++ I +L V+L
Sbjct: 989 EDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRL 1048
Query: 219 KEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAELA 268
K+ E + EK +KL+ E L +++ + + L ++ EL
Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQ 1098
Score = 70.2 bits (172), Expect = 8e-14
Identities = 35/267 (13%), Positives = 105/267 (39%), Gaps = 7/267 (2%)
Query: 2 DAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEERE 61
+ K Q ++ + + E +++ K++ + ++ L++ ++ +
Sbjct: 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975
Query: 62 KALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQ 121
A+ ++ + + ++E+ K + ++++ + E K L
Sbjct: 976 LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035
Query: 122 QDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEE 181
+ E + +L +LK+ ++ + ++ + + + +++ + ++ A++ + EE
Sbjct: 1036 KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095
Query: 182 ELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEV-- 239
EL+ L+ + A +++ E + I L L+ +A AEK + L +E+
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155
Query: 240 -----DRLEDELGLNKDRYKSLADEMD 261
+ D ++ S + D
Sbjct: 1156 LKTELEDTLDTTATQQELRGSDYKDDD 1182
Score = 57.5 bits (139), Expect = 1e-09
Identities = 31/220 (14%), Positives = 84/220 (38%), Gaps = 7/220 (3%)
Query: 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEER 60
++ + Q +++EK +A K E + +K+ + ++ + +L E
Sbjct: 964 LEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE 1023
Query: 61 E-------KALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMC 113
E K ES ++ L +++ E+ ++ E+ + ++ + E
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083
Query: 114 KVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGD 173
L+ + + EE + +L++ +A K E+ ++ ++++LE + +
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143
Query: 174 AKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQ 213
+ +L EEL+ + L+ + + +
Sbjct: 1144 KQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 65.9 bits (161), Expect = 2e-12
Identities = 34/253 (13%), Positives = 91/253 (35%), Gaps = 9/253 (3%)
Query: 5 KKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKAL 64
+K+ Q M+ + + K + + + + + V + +
Sbjct: 832 RKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIV 891
Query: 65 ---AAAESEVAAL-NRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRS 120
+A +K+++ +E+ ++ K+ + + DE N+ K L +
Sbjct: 892 YLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKM 951
Query: 121 QQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELE 180
E T +L+ ++ ++ + ++ +++E+ + + +E
Sbjct: 952 NNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIE 1011
Query: 181 EELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVD 240
E + + L ++ N ++ K ++ + + + E E KKL +E
Sbjct: 1012 EWADKYKHETEQLVSELKEQNTLLKTEKEELNR-----RIHDQAKEITETMEKKLVEETK 1066
Query: 241 RLEDELGLNKDRY 253
+LE +L + RY
Sbjct: 1067 QLELDLNDERLRY 1079
Score = 59.4 bits (144), Expect = 3e-10
Identities = 29/238 (12%), Positives = 80/238 (33%), Gaps = 8/238 (3%)
Query: 34 LRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVA-ALNRKVQMIEEDLEKSEERS 92
K + L ++ R K + + + V+ +
Sbjct: 829 YVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLK 888
Query: 93 GTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVS 152
+ A + K+ ++ ++ L N++ + + ++ + + +
Sbjct: 889 AIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLL 948
Query: 153 RKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIK 212
K+ +E ++++S ++ EEE K N + SL+ K + + + + + K
Sbjct: 949 EKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK 1008
Query: 213 QLAVKLKEAEARAE----FAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAE 266
+ + + E ++ L+ E + L + D+ K + + M+ E
Sbjct: 1009 TIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRI---HDQAKEITETMEKKLVE 1063
Score = 55.1 bits (133), Expect = 7e-09
Identities = 32/202 (15%), Positives = 63/202 (31%), Gaps = 10/202 (4%)
Query: 67 AESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEER 126
+ ++ L R+ S + R R
Sbjct: 831 VRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLA---RVHYHRTL 887
Query: 127 MDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVV 186
+ Q R++A+ +KL +E + + KIM+L+ ++
Sbjct: 888 KAIVYLQCCYRRMMAK-------RELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQ 940
Query: 187 GNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDEL 246
KSL +++ +L+ +E A+ A V LQ+E+ +L EL
Sbjct: 941 NKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKEL 1000
Query: 247 GLNKDRYKSLADEMDSTFAELA 268
+ K++ + D E
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETE 1022
Score = 53.6 bits (129), Expect = 2e-08
Identities = 35/230 (15%), Positives = 77/230 (33%), Gaps = 26/230 (11%)
Query: 4 IKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKA 63
I+K ++ Q + A + K L + +E +K
Sbjct: 870 IQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKREL-------KKLKIEARSVERYKKL 922
Query: 64 LAAAESEVAALNRKVQMIEEDLE-------KSEERSGTATAKLAEASQAADEANRMCKVL 116
E+++ L RK+ ++ + E T T KL + + K
Sbjct: 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNA 982
Query: 117 ENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKI 176
NR +E + +L +L + + + + +D+ + + EL+ +K +
Sbjct: 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLK---TEK 1039
Query: 177 MELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAE 226
EL + + ++E ++ + KQL + L + R +
Sbjct: 1040 EELNRRIH---------DQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 51.3 bits (123), Expect = 1e-07
Identities = 28/209 (13%), Positives = 71/209 (33%), Gaps = 6/209 (2%)
Query: 59 EREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLEN 118
+R + + A + AL R + + E K A +R K +
Sbjct: 833 KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY 892
Query: 119 RSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIME 178
M + +LK+ ++ A + + ++ L E+++ + ++ + +
Sbjct: 893 LQCCYRRMMAKR--ELKKLKIEARSVE-RYKKLHIGL---ENKIMQLQRKIDEQNKEYKS 946
Query: 179 LEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKE 238
L E++ + + + +R+ + + K ++ + K + + Q E
Sbjct: 947 LLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006
Query: 239 VDRLEDELGLNKDRYKSLADEMDSTFAEL 267
+E+ K + L E+ L
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNTLL 1035
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 61.6 bits (149), Expect = 4e-12
Identities = 68/147 (46%), Positives = 103/147 (70%)
Query: 74 LNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQ 133
+NR++Q++EE+L++++ER TA KL EA +AADE+ R KV+E+R+Q+DEE+M+ Q
Sbjct: 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQ 60
Query: 134 LKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSL 193
LKEA+ +AEDAD K +EV+RKL +E +LE AE+R + + K ELEEELK V N+LKSL
Sbjct: 61 LKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSL 120
Query: 194 EVSEEKANQRVEEYKRQIKQLAVKLKE 220
E E+ + + ++ +L + E
Sbjct: 121 EDKVEELLSKNYHLENEVARLKKLVGE 147
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 54.9 bits (132), Expect = 4e-10
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 14/98 (14%)
Query: 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADK--------------VEVDLDTT 46
MDAIKKKMQ +K++K++A+D+A+ E K A R+ + E D
Sbjct: 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQV 63
Query: 47 KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEED 84
+ L ++ L E+ A AESEVA+LNR++Q++EE+
Sbjct: 64 LEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEEE 101
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 53.4 bits (128), Expect = 4e-08
Identities = 27/194 (13%), Positives = 77/194 (39%), Gaps = 8/194 (4%)
Query: 83 EDLEKSEERSGTATAKLAEASQAADEANRMC----KVLENRSQQDEERMDQLTNQLKEAR 138
+ LE+ + KL + + + L+ +++Q +++ Q+ + A
Sbjct: 1913 DQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAE 1972
Query: 139 LLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEE 198
+ +DA ++ + + + A ++ L EE++ + N+ L++ ++
Sbjct: 1973 IKQKDARELQVQLDVRNKEIAVQKVKAYADLEK-AEPTGPLREEVEQLENAANELKLKQD 2031
Query: 199 KANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDR---LEDELGLNKDRYKS 255
+ + ++ I + E + K++ +VDR L D L + R++
Sbjct: 2032 EIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQ 2091
Query: 256 LADEMDSTFAELAG 269
++ ++ + + G
Sbjct: 2092 QSENFNTQMSTVVG 2105
Score = 27.9 bits (62), Expect = 5.2
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 175 KIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEA----------R 224
K +LEEE + LK L +E + ++ ++L VK ++A
Sbjct: 1911 KRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQA 1970
Query: 225 AEFAEKTVKKLQKEVDRLEDELGLNKD 251
AE +K ++LQ ++D E+ + K
Sbjct: 1971 AEIKQKDARELQVQLDVRNKEIAVQKV 1997
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 48.4 bits (115), Expect = 8e-08
Identities = 34/98 (34%), Positives = 60/98 (61%), Gaps = 14/98 (14%)
Query: 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADK--------------VEVDLDTT 46
M+AIKKKMQ +K++K++A+D+A+ E K A R + E +++
Sbjct: 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKY 63
Query: 47 KKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEED 84
+++ +A + LE+ EK AE+EVA+LNR++Q++EE+
Sbjct: 64 SESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVEEE 101
Score = 25.6 bits (56), Expect = 7.9
Identities = 24/97 (24%), Positives = 49/97 (50%)
Query: 149 DEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYK 208
+ + +K+ ++ + E A DR + +A + E+ K + + L+ + VE+Y
Sbjct: 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS 64
Query: 209 RQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDE 245
+K+ KL++AE +A AE V L + + +E+E
Sbjct: 65 ESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVEEE 101
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 1e-06
Identities = 31/219 (14%), Positives = 61/219 (27%), Gaps = 71/219 (32%)
Query: 110 NRMCKVLENRSQQDEERMDQL---TNQLKEA--RLLAEDADAKS----DEV-SRKL--AF 157
++ ++ + + + ++ RLL V + K AF
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 158 --------------VEDELEVAEDRVKSGDAKIMELEEE------LKVVGNSLKSL---- 193
V D L A S D M L + LK + + L
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 194 -------------EVSEEKANQRVEEYKR-QIKQL--AVK-----LKEAEARAEFA---- 228
+ + A + +K +L ++ L+ AE R F
Sbjct: 323 LTTNPRRLSIIAESIRDGLA--TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 229 --------EKTVKKLQKEVDRLEDELGLNKDRYKSLADE 259
+ + +V + + + +NK SL ++
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Score = 44.1 bits (103), Expect = 3e-05
Identities = 42/249 (16%), Positives = 83/249 (33%), Gaps = 71/249 (28%)
Query: 19 MDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREK-ALAAAE--------S 69
MD +T E Q + ++ + V D N D KD+++ K L+ E
Sbjct: 7 MD-FETGEHQYQYKDI----LSVFEDAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 70 EVAAL-----------NRKVQM-IEEDLE----------KSEERSGTATAKLAEASQAAD 107
V+ VQ +EE L K+E+R + ++ +
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI-----E 114
Query: 108 EANRMC---KVLENRSQQDEERMDQLTNQLKEAR----------------LLAEDADAKS 148
+ +R+ +V + + +L L E R +A D S
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-CLS 173
Query: 149 DEVSRKLAFVEDE---LEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVE 205
+V K+ F + L + S + + L++ L + + S R+
Sbjct: 174 YKVQCKMDF---KIFWLNLK--NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 206 EYKRQIKQL 214
+ ++++L
Sbjct: 229 SIQAELRRL 237
Score = 32.9 bits (74), Expect = 0.12
Identities = 30/202 (14%), Positives = 60/202 (29%), Gaps = 74/202 (36%)
Query: 5 KKKMQAMKMEKDSAMDKADTCEGQAKDA-NLRADKVEVDLDTTKKNLDQAVKD------- 56
+++ K ++ + + +A +A NL K+ L TT+ + V D
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-KI---LLTTR---FKQVTDFLSAATT 286
Query: 57 ----LEEREKALAAAESEVAALNRKVQMIEEDLEKSEE----------------RSGTAT 96
L+ L E + + L + + +DL E R G AT
Sbjct: 287 THISLDHHSMTLTPDEVK-SLLLKYLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLAT 343
Query: 97 ---------AKLAEASQAA--------------------DEANRMCKVLE----NRSQQD 123
KL +++ A+ +L + + D
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 124 EERMDQLTNQLKEARLLAEDAD 145
+ N+L + L+ +
Sbjct: 404 VMVV---VNKLHKYSLVEKQPK 422
Score = 28.3 bits (62), Expect = 3.0
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 28 QAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKAL----AAAESEVAALNRKVQMIEE 83
+ K +R D + + N ++ L+ + + E V A+ + IEE
Sbjct: 504 EQK---IRHDSTAWNASGSILNT---LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 84 DLEKSEERSGTATAKLAEASQAADEANR 111
+L S+ A +AE +EA++
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAHK 585
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 3e-06
Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 43/141 (30%)
Query: 49 NLDQAVKDLEEREKALAAAESEVAALNRKVQMI------------EEDLEKSEERSGTAT 96
+++ V+ + R + A MI +E L+ ER G T
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 97 AKLAEASQAADEANRMCKVLEN-RSQQ-----DEERMDQLTNQLKEARLLAEDADAKSDE 150
L E N N +QQ D +D +TN L +L
Sbjct: 1838 GWLVEI------VN------YNVENQQYVAAGDLRALDTVTNVLNFIKL----------- 1874
Query: 151 VSRKLAFVEDELEVAEDRVKS 171
+K+ +E + ++ + V+
Sbjct: 1875 --QKIDIIELQKSLSLEEVEG 1893
Score = 45.8 bits (108), Expect = 9e-06
Identities = 35/182 (19%), Positives = 62/182 (34%), Gaps = 58/182 (31%)
Query: 132 NQLKE--ARLLAEDAD--AKSDE-------VSRKLAFVEDELEVAEDRVKSGD----AKI 176
+QL+E ++L E + A DE V + L +V +E +V D +
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE--PSKVGQFDQVLNLCL 88
Query: 177 MELEEE-LK------VVGNSLKSLEVSEEKANQRVEEY-------KRQIKQ-----L--A 215
E E L+ + L+ + + K + ++ Y KR + L A
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 216 VKLKEAEARAEF-----AEKTVKKLQKEVDRLEDELGLNKDRYKSLADE----MDSTFAE 266
V A+ A F + ++L+ +L Y L + T +E
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELR--------DLY---QTYHVLVGDLIKFSAETLSE 197
Query: 267 LA 268
L
Sbjct: 198 LI 199
Score = 45.4 bits (107), Expect = 1e-05
Identities = 34/215 (15%), Positives = 66/215 (30%), Gaps = 76/215 (35%)
Query: 99 LAEASQAADEA-NRMCK-------------VLEN-----------RSQQDEERMDQLT-N 132
L + S+AA + NR V+ N + ++ E +
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 133 QLKEARLLAEDADAKSDEVSRKLAFV--EDEL-------------EVAEDRV-KS----- 171
+ + +L E + +E S F + L E A KS
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIP 1754
Query: 172 ------G-----------DAKIMELEEELKVV---GNSLKSLEVSEEKANQRVEEYKRQI 211
G A +M +E ++VV G ++ + A R E +
Sbjct: 1755 ADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTM-------QVAVPRDELGRSNY 1807
Query: 212 KQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDEL 246
+A+ A F+++ ++ + + V + L
Sbjct: 1808 GMIAI--NPGRVAASFSQEALQYVVERVGKRTGWL 1840
Score = 40.0 bits (93), Expect = 8e-04
Identities = 40/243 (16%), Positives = 69/243 (28%), Gaps = 74/243 (30%)
Query: 50 LDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEAS------ 103
+ + + L E L + + + I E LE S
Sbjct: 188 IKFSAETLSE----LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 104 -QAADEANRMCKVLENRSQQDEERMDQLTNQLKE---ARLLAEDADAKS-DEVSRK---L 155
Q A K+L + + T + A +AE +S RK +
Sbjct: 244 IQLAHYVV-TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 156 AF-------------------VEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVS 196
F +ED LE E G M L + + + ++
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNE-----GVPSPM-----LSISNLTQEQVQDY 352
Query: 197 EEKANQRVEEYKR-QI------------------KQLAVKLKEAEA-------RAEFAEK 230
K N + K+ +I L + L++A+A R F+E+
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 231 TVK 233
+K
Sbjct: 413 KLK 415
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 42.0 bits (99), Expect = 1e-04
Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 2/111 (1%)
Query: 159 EDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQL--AV 216
E + A D+ LE+ + +L+ ++K +++Y R +K+L
Sbjct: 843 EPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWA 902
Query: 217 KLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAEL 267
K + ++ +Q ++ LE G + ++ S A+L
Sbjct: 903 TTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQL 953
Score = 28.1 bits (63), Expect = 3.8
Identities = 7/87 (8%), Positives = 26/87 (29%), Gaps = 5/87 (5%)
Query: 4 IKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKA 63
++ + + + + Q + N + T++ + + +
Sbjct: 928 LEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVP-----ELTERKDTFFAQQWTGVKSS 982
Query: 64 LAAAESEVAALNRKVQMIEEDLEKSEE 90
++ + A ++Q IE+
Sbjct: 983 AETYKNTLLAELERLQKIEDLHHHHHH 1009
Score = 27.3 bits (61), Expect = 7.5
Identities = 9/96 (9%), Positives = 24/96 (25%), Gaps = 6/96 (6%)
Query: 3 AIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNL------DQAVKD 56
A K + E ++ + + +E ++ ++
Sbjct: 902 ATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGV 961
Query: 57 LEEREKALAAAESEVAALNRKVQMIEEDLEKSEERS 92
E E+ + + + + L ER
Sbjct: 962 PELTERKDTFFAQQWTGVKSSAETYKNTLLAELERL 997
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 39.2 bits (91), Expect = 3e-04
Identities = 58/135 (42%), Positives = 91/135 (67%)
Query: 133 QLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKS 192
++K+ E+ +K+ + ++A ++ LE AE+R + + K ELEEELK V N+LKS
Sbjct: 1 RMKQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKS 60
Query: 193 LEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDR 252
LE EK +Q+ ++Y+ +IK L+ KLKEAE RAEFAE++V KL+K +D LEDEL K +
Sbjct: 61 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 120
Query: 253 YKSLADEMDSTFAEL 267
YK++++EM ++
Sbjct: 121 YKAISEEMKQLEDKV 135
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled
coil, alanine, symmetry, axial stagger, BEND,
contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Length = 81
Score = 35.6 bits (82), Expect = 0.002
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 28/108 (25%)
Query: 1 MDAIKKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEER 60
MDAIKKKMQ +K++K++A+D+A+ E K A R+ +
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQ---------------------- 38
Query: 61 EKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADE 108
E E+ AL +K++ E++L+K E A KL A + A +
Sbjct: 39 ------LEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKATD 80
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.002
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 52 QAVKDLEEREKALAAAESEVA-ALNRKVQ 79
QA+K L+ K L A +S A A+ ++
Sbjct: 20 QALKKLQASLK-LYADDSAPALAIKATME 47
Score = 29.9 bits (66), Expect = 0.57
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 208 KRQIKQL--AVKLKEAEARAEFAEK-TVK 233
K+ +K+L ++KL ++ A K T++
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 27.6 bits (60), Expect = 2.8
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 5/26 (19%)
Query: 229 EK-TVKKLQKEVDRLEDE----LGLN 249
EK +KKLQ + D+ L +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK 43
Score = 26.8 bits (58), Expect = 4.9
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 13/42 (30%)
Query: 123 DEERMDQLTNQLKEARLLAED-ADAKSDEVSRKLAFVEDELE 163
+++ + +L LK L A+D A A LA ++ +E
Sbjct: 18 EKQALKKLQASLK---LYADDSAPA--------LA-IKATME 47
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 34.5 bits (79), Expect = 0.028
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 150 EVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKR 209
+ KL +EDE R+K D + +EL+ V N + +E + ++ + +
Sbjct: 94 GIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNK 153
Query: 210 QIKQLAVKLKEAEARAEFAEKTVKKLQKEV-DRLEDE 245
+ L E + + + LQKE+ +R E
Sbjct: 154 AVTSYNKILTEEDLQ---MRRLATALQKEIGERTHAE 187
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 33.6 bits (76), Expect = 0.063
Identities = 22/149 (14%), Positives = 48/149 (32%)
Query: 34 LRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSG 93
+ + E + L+Q + ER+K L +E+E A +S +
Sbjct: 664 ITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAK 723
Query: 94 TATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSR 153
AEA++ E + + L+ ++ E + + L EVS+
Sbjct: 724 AEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSK 783
Query: 154 KLAFVEDELEVAEDRVKSGDAKIMELEEE 182
E + ++ ++ +
Sbjct: 784 AQQLANVEAKKFKEMTEALGPGTIRDLAV 812
Score = 30.9 bits (69), Expect = 0.48
Identities = 34/232 (14%), Positives = 72/232 (31%), Gaps = 17/232 (7%)
Query: 5 KKKMQAMKMEKDSAMDKADTCEGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKAL 64
+ A D+A + +++ VE T+ L ++V+ E
Sbjct: 609 SEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNS 668
Query: 65 AAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDE 124
A ++ + Q +E++ ER AE ++ + + +
Sbjct: 669 QEAAAK-----HEAQRLEQEARGRLERQKILDQSEAEKARKELLELEA----MSMAVEST 719
Query: 125 ERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELK 184
EA + + ++ + +E E E+ K + E +
Sbjct: 720 GNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELER-------VKKVREMELIY 772
Query: 185 VVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQ 236
+ +++ AN +++K + L A A E VK LQ
Sbjct: 773 ARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAG-PEMQVKLLQ 823
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 32.0 bits (73), Expect = 0.19
Identities = 11/125 (8%), Positives = 36/125 (28%), Gaps = 5/125 (4%)
Query: 117 ENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKI 176
+ ++Q+ Q + + S + ++ +++++E
Sbjct: 144 AKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNR 203
Query: 177 MELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQ 236
+ ELK + + R Y + + + + EK +
Sbjct: 204 RRIHGELKTYKSPGLEVLFQ----GPRGSRYDEAEGRFE-VINNETEQLKAEEKKILNQF 258
Query: 237 KEVDR 241
++ +
Sbjct: 259 LKIKK 263
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic
hypermutat protein-DNA complex, DNA mispair, cancer;
HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B*
2o8e_B* 2o8f_B*
Length = 1022
Score = 31.2 bits (71), Expect = 0.37
Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 36/141 (25%)
Query: 158 VEDELEVAEDRVKSGDAKIMELEEE---------LKVVGNSLKS--LEVSEEKANQRV-E 205
+ + + A ++ + ++E E+ + G LE+ E + + E
Sbjct: 595 FDSDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLEIPENFTTRNLPE 654
Query: 206 EYKRQ-------------IKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELGLNKDR 252
EY+ + I++ L AE R + + K RL N
Sbjct: 655 EYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCM------RRLFYNFDKNYKD 708
Query: 253 YKSLAD---EMD--STFAELA 268
++S + +D A +
Sbjct: 709 WQSAVECIAVLDVLLCLANYS 729
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain;
coiled coil, actin, troponin, cytoskeleton,
cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB:
2z5h_A 1kql_A 1mv4_A 2g9j_C
Length = 52
Score = 27.8 bits (61), Expect = 0.51
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 229 EKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAEL 267
E V +L+K VD LEDEL K +YK++++E+D ++
Sbjct: 11 ENEVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDM 49
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 30.4 bits (69), Expect = 0.67
Identities = 10/87 (11%), Positives = 31/87 (35%), Gaps = 1/87 (1%)
Query: 149 DEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYK 208
+ E+ + +++K E+ + V A +
Sbjct: 121 IPTIVNFS-AEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADML 179
Query: 209 RQIKQLAVKLKEAEARAEFAEKTVKKL 235
++++ L +L++ E A+ ++ ++ L
Sbjct: 180 KRVEPLRNELQKLEDDAKDNQQKLEAL 206
Score = 30.0 bits (68), Expect = 0.82
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 1/106 (0%)
Query: 34 LRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSG 93
D ++ ++N + + E + A E E + ++ +G
Sbjct: 104 STTDWKQIRSIIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAG 163
Query: 94 TATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARL 139
K A A + + + L N Q+ E+ +L+ L
Sbjct: 164 -PMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEALLL 208
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 30.2 bits (67), Expect = 0.74
Identities = 37/214 (17%), Positives = 72/214 (33%), Gaps = 5/214 (2%)
Query: 26 EGQAKDANLRADKVEVDLDTTKKNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDL 85
E K N E + +A KDLE+ + E EV + +
Sbjct: 588 ELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKM 647
Query: 86 EKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDAD 145
E + + A ++ A+ R +N E D+L K+ + ++ D
Sbjct: 648 EAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFD 707
Query: 146 AKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVE 205
+ ++ + E+ L+ + VK E + V N +L + N+
Sbjct: 708 EFKNGKNKDFSKAEETLKALKGSVKDLGIN----PEWISKVENLNAALNEFKNGKNKDFS 763
Query: 206 EYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEV 239
+ + L +K+ + +K V L + V
Sbjct: 764 KVTQAKSDLENSVKDVIINQKVTDK-VDNLNQAV 796
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 30.2 bits (68), Expect = 0.75
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 149 DEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEE 206
D + + + +E+ + E S DA+I EL E +V + L+ Q
Sbjct: 1 DSGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSR 58
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein,
ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Length = 109
Score = 28.3 bits (64), Expect = 0.95
Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 159 EDELEVAEDRVKSGD---AKIMELEEELKVVGNSLKSLEVSEEK 199
D +E A + GD AK ++ + + + S+++ + ++EK
Sbjct: 66 RDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAKDEADEK 109
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 29.3 bits (65), Expect = 1.1
Identities = 18/150 (12%), Positives = 57/150 (38%), Gaps = 2/150 (1%)
Query: 121 QQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELE 180
++ +D L ++E R + A + ++ + +E+E + +V + + +
Sbjct: 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTN 73
Query: 181 EELKVVGNSLKSLEVSEE--KANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKE 238
++ + + ++ E N + K + Q +++ + + + + L+KE
Sbjct: 74 AKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKE 133
Query: 239 VDRLEDELGLNKDRYKSLADEMDSTFAELA 268
+ LE + ++ + T +
Sbjct: 134 MLELEKLALELESLVENEVKNIKETQQIIF 163
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 29.1 bits (66), Expect = 1.9
Identities = 24/112 (21%), Positives = 57/112 (50%), Gaps = 18/112 (16%)
Query: 149 DEVSRKL--------AFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKA 200
D + RK A +++ +++R+K+ +A+I +L EE+ L++ E +
Sbjct: 404 DALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEI----AKLRAEWEREREI 459
Query: 201 NQRVEEYKRQIKQLAVKLKEAEAR------AEFAEKTVKKLQKEVDRLEDEL 246
+++ E + ++ ++ +++ AE + AE + KL+ EV+ L ++L
Sbjct: 460 LRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKL 511
>2b3t_B RF-1, peptide chain release factor 1; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: e.38.1.1
Length = 360
Score = 28.7 bits (65), Expect = 2.3
Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 21/110 (19%)
Query: 81 IEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDE-----ERMDQLTNQLK 135
I LE ER A L +A AD R + +Q + Q+ ++
Sbjct: 5 IVAKLEALHERHEEVQALLGDAQTIAD-QERFRALSREYAQLSDVSRCFTDWQQVQEDIE 63
Query: 136 EARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKV 185
A+++ +D + + +DEL A+++ + +LE++L+V
Sbjct: 64 TAQMMLDDPEMR--------EMAQDELREAKEKSE-------QLEQQLQV 98
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 28.3 bits (64), Expect = 2.7
Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 149 DEVSRKLAFVEDELEVAE-DRVKSGDAKIMELE---EELKVVGNSLKSLEVSEEKAN-QR 203
+ V L + +V D + D + L+ N + ++E+ + + +
Sbjct: 12 ELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKI-AVEIGKRRKKGEP 70
Query: 204 VEEYKRQIKQLAVKLKEAEARAEFAEKTVKKL 235
V+E + +++ ++ E E E +K +
Sbjct: 71 VDELLAKSREIVKRIGELENEVEELKKKIDYY 102
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein,
ribosomal protein, RNA-binding, binding, metal-binding,
zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y
3d5c_X 3mr8_V 3ms0_V
Length = 354
Score = 28.3 bits (64), Expect = 2.7
Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 21/108 (19%)
Query: 83 EDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDE-----ERMDQLTNQLKEA 137
+ L++ EE A L++ D R + ++ E ++ L++A
Sbjct: 3 DKLDRLEEEYRELEALLSDPEVLKD-KGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQA 61
Query: 138 RLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKV 185
L +D + K E+A+ ++ A+ LE+EL+
Sbjct: 62 ESLLDDPELK---------------EMAKAEREALLARKEALEKELER 94
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 28.3 bits (62), Expect = 2.9
Identities = 32/180 (17%), Positives = 69/180 (38%), Gaps = 15/180 (8%)
Query: 68 ESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDEERM 127
+S+V + KV IE +++ E DE + CK L+NR +
Sbjct: 8 DSKVRNVKDKVMCIEHEIKSLE--------------DLQDEYDFKCKTLQNREHETNGVA 53
Query: 128 DQLTNQLKEA-RLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVV 186
Q + + + D K EV K+ + + E+ ++ + + + + ++ +
Sbjct: 54 KSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACI 113
Query: 187 GNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDEL 246
G + + V E +Q++Q KL+E E + + + K ++ + L
Sbjct: 114 GGPPNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSL 173
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris,
coiled-coil, structur genomics, PSI-2, protein structure
initiative; 2.00A {Xanthomonas campestris PV}
Length = 78
Score = 26.3 bits (58), Expect = 3.0
Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 204 VEEYKRQIKQLAVKLKEAEARAEFAEKTVKKL-------QKEVDRLEDELGLNKDRYKSL 256
E+ + ++L +L E E R F E+ + +L + R + + + +
Sbjct: 2 HEQLSPRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61
Query: 257 ADEMDSTFAE 266
+ + A+
Sbjct: 62 RSTLFADAAD 71
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 27.9 bits (63), Expect = 3.9
Identities = 15/103 (14%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Query: 138 RLLAEDADA-KSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVS 196
+ L ++ + + +A + L + V+ ++ +E++ N + + V
Sbjct: 5 KRLRQEPEVFHRAIREKGVALDLEALLALDREVQELKKRL----QEVQTERNQV-AKRVP 59
Query: 197 EEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEV 239
+ + E + K L + K E E ++ L +V
Sbjct: 60 KAPP-EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQV 101
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Length = 250
Score = 27.1 bits (59), Expect = 6.3
Identities = 9/73 (12%), Positives = 28/73 (38%)
Query: 174 AKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVKLKEAEARAEFAEKTVK 233
ME + K + ++ L + ++A ++E ++++ + + V
Sbjct: 141 ETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVS 200
Query: 234 KLQKEVDRLEDEL 246
K++ E + +
Sbjct: 201 KIEWEYECEPGMV 213
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
1 (RF-1), structural joint center for structural
genomics, JCSG; 2.34A {Streptococcus mutans}
Length = 371
Score = 27.2 bits (61), Expect = 6.4
Identities = 20/110 (18%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
Query: 81 IEEDLEKSEERSGTATAKLAEASQAADEANRMCKVLENRSQQDE-----ERMDQLTNQLK 135
I + L+ E+R L++ +D R ++ + E Q+ +
Sbjct: 15 IYDQLQAVEDRYEELGELLSDPDVVSD-TKRFMELSREEANSRETVAVYREYKQVVQNIA 73
Query: 136 EARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKSGDAKIMELEEELKV 185
+A+ + +DA D ++A ++EL+ ++ + E EE+L+
Sbjct: 74 DAQEMIKDAS--GDPELEEMA--KEELKNSKVAKE-------EYEEKLRF 112
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription
regulator; 1.80A {Streptococcus mutans}
Length = 204
Score = 26.8 bits (59), Expect = 6.8
Identities = 17/127 (13%), Positives = 46/127 (36%), Gaps = 15/127 (11%)
Query: 53 AVKDLEEREKALAAAESEVAALNRKV------------QMIEEDLEKSEERSGTATAKLA 100
++ LE+ K + N+ + ++ D+ +S +L
Sbjct: 77 TLRKLEKDGKITKEVVIQDGRPNKNIYAITESGKKELASYLQSDVNDEIFKS-DFLMRLF 135
Query: 101 EASQAADEANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVED 160
+ D+ +++ ++ EE++ +L+ L+ + E + + LA +
Sbjct: 136 FGNSLNDDDLE--QLIREEIERKEEKIKRLSENLEIWKKKGELTPTQEITIKYGLAQYKS 193
Query: 161 ELEVAED 167
+V E+
Sbjct: 194 TKKVLEE 200
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering,
endoplasmic reticulum, ER-golgi transport, membrane,
phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Length = 706
Score = 27.2 bits (59), Expect = 7.0
Identities = 13/170 (7%), Positives = 52/170 (30%), Gaps = 7/170 (4%)
Query: 48 KNLDQAVKDLEEREKALAAAESEVAALNRKVQMIEEDLEKSEERSGTATAKLAEASQAAD 107
N++ +K ++ LA+ + E + A + Q
Sbjct: 13 LNINDRIKQVQNERNELASKLQNLKQSLASNDTEVALSEVIAQDIIEVGASVEGLEQLRA 72
Query: 108 EANRMCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAED 167
+ + + N+ ++ + Q+ + + D +++ + D+++
Sbjct: 73 KYGDL--QILNKLEKVAVQQTQMQAGVDKLDSFERQLDELAEQPPDQFTL--DDVKALHS 128
Query: 168 RVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVK 217
++ S A + + + ++ + + + +++
Sbjct: 129 KLTSVFA---TVPQINNIDSQYAAYNKLKSKVTGKYNDVIIQRLATNWSN 175
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 7.8
Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 158 VEDELEVAEDRVKSGDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYKRQIKQLAVK 217
+ E E + ++ EL+ K + EKA + +EE+ ++ + K
Sbjct: 80 LTQEPESIRKWREEQRKRLQELDAASK------VMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 218 LKEAEARAEFAEKTVKKLQKEV 239
K A+ + ++ ++
Sbjct: 134 NKINNRIAD--KAFYQQPDADI 153
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI,
MCSG, protein structure initiative; 2.00A {Clostridium
acetobutylicum}
Length = 361
Score = 26.7 bits (60), Expect = 8.3
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 226 EFAEKTVKKLQKEVDRLEDEL---GLNKDRYKSLA 257
+ E+++ ++KE R +EL G K + A
Sbjct: 263 NYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHA 297
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 26.7 bits (60), Expect = 8.4
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 116 LENRSQQDEERMDQLT---NQLKEARLLAEDADAKSDEVSRKLAFVE---DELEVAEDRV 169
L R ++ +D++ + +E E ++ +++S+++ ++ + ++RV
Sbjct: 18 LATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRV 77
Query: 170 KSGDAKIMELEEELKVVGNSLKSL 193
K +I LEEEL+ V LK+
Sbjct: 78 KELKEEIDRLEEELRKVEEELKNT 101
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.304 0.121 0.296
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,827,309
Number of extensions: 238140
Number of successful extensions: 1302
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1123
Number of HSP's successfully gapped: 397
Length of query: 270
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 178
Effective length of database: 4,133,061
Effective search space: 735684858
Effective search space used: 735684858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 56 (26.4 bits)