RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1411
         (270 letters)



>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
           {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
          Length = 368

 Score = 28.3 bits (62), Expect = 0.95
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 202 QRVEEYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRL 242
           QR EE  R  +Q A +L+  + +   +    K+L   V  L
Sbjct: 3   QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 43


>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase
           NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
          Length = 561

 Score = 26.8 bits (59), Expect = 2.9
 Identities = 6/42 (14%), Positives = 17/42 (40%)

Query: 226 EFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAEL 267
           +   + + K+   + +  +  G     Y + A+ +   F +L
Sbjct: 389 DIGREILTKMNAHLKQWTERTGFAFSLYSTPAENLCYRFCKL 430


>d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast
           (Saccharomyces cerevisiae), pII [TaxId: 4932]}
          Length = 207

 Score = 26.4 bits (58), Expect = 3.7
 Identities = 4/34 (11%), Positives = 15/34 (44%)

Query: 233 KKLQKEVDRLEDELGLNKDRYKSLADEMDSTFAE 266
           K+L ++++  E    +  +  +++     S   +
Sbjct: 4   KELMQQIENFEKIFTVPTETLQAVTKHFISELEK 37


>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha, AccA {Escherichia coli
           [TaxId: 562]}
          Length = 316

 Score = 26.2 bits (57), Expect = 4.4
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 206 EYKRQIKQLAVKLKEAEARAEFAEKTVKKLQKEVDRLEDELG-LNKDRYKSL 256
           ++++ I +L  K+    A +   EK    + +EV RL ++   L +  +  L
Sbjct: 4   DFEQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADL 55


>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
          Length = 493

 Score = 25.3 bits (55), Expect = 8.7
 Identities = 18/161 (11%), Positives = 49/161 (30%), Gaps = 26/161 (16%)

Query: 112 MCKVLENRSQQDEERMDQLTNQLKEARLLAEDADAKSDEVSRKLAFVEDELEVAEDRVKS 171
           + +      ++  +R   L         +    +                   A+  + +
Sbjct: 333 VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHA---------PTPAEAKTALVA 383

Query: 172 GDAKIMELEEELKVVGNSLKSLEVSEEKANQRVEEYK-----------RQIKQLAVKLKE 220
              ++  +   L+  G+     E  E +   R   Y             ++++L   L+ 
Sbjct: 384 NPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLT-GLEH 442

Query: 221 AEARAEFAEKTVKKLQKEVDRLEDELGLNKDRYKSLADEMD 261
            +   E+     K+L  ++  L   LG      + + +E++
Sbjct: 443 EKLLDEY-----KELLDQIAELLRILGSADRLMEVIREELE 478


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.304    0.121    0.296 

Gapped
Lambda     K      H
   0.267   0.0435    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 852,093
Number of extensions: 38997
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 93
Length of query: 270
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,254,276
Effective search space: 233295336
Effective search space used: 233295336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 52 (24.6 bits)