Query psy14113
Match_columns 543
No_of_seqs 258 out of 1867
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 19:52:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8t_A Protein (CRP1); LIM dom 99.9 5.7E-26 1.9E-30 217.7 9.9 152 316-473 7-186 (192)
2 2xjy_A Rhombotin-2; oncoprotei 99.9 2.5E-24 8.7E-29 193.4 7.9 123 402-532 2-129 (131)
3 2xqn_T Testin, TESS; metal-bin 99.9 1.1E-23 3.7E-28 188.3 8.6 119 402-529 3-124 (126)
4 2xqn_T Testin, TESS; metal-bin 99.9 1.1E-23 3.9E-28 188.1 8.3 120 315-461 2-125 (126)
5 2jtn_A LIM domain-binding prot 99.9 1.8E-23 6.3E-28 198.7 9.9 122 400-530 58-181 (182)
6 1rut_X Flinc4, fusion protein 99.9 7.4E-24 2.5E-28 202.5 6.9 159 315-498 4-170 (188)
7 2xjy_A Rhombotin-2; oncoprotei 99.9 1.5E-23 5.1E-28 188.3 7.1 123 316-463 2-129 (131)
8 2rgt_A Fusion of LIM/homeobox 99.9 1.9E-23 6.7E-28 196.3 8.0 146 316-497 6-156 (169)
9 2rgt_A Fusion of LIM/homeobox 99.9 3E-23 1E-27 195.0 8.7 124 401-533 5-130 (169)
10 1rut_X Flinc4, fusion protein 99.9 3.5E-23 1.2E-27 197.8 5.6 124 402-533 5-133 (188)
11 1b8t_A Protein (CRP1); LIM dom 99.9 1.2E-22 4E-27 194.6 7.8 123 401-533 6-177 (192)
12 2jtn_A LIM domain-binding prot 99.9 4.4E-22 1.5E-26 189.2 8.2 119 315-460 59-180 (182)
13 2cup_A Skeletal muscle LIM-pro 99.8 7.7E-21 2.6E-25 163.2 7.6 96 401-502 4-101 (101)
14 2cup_A Skeletal muscle LIM-pro 99.8 2.8E-20 9.5E-25 159.8 7.8 97 314-435 3-101 (101)
15 1m3v_A FLIN4, fusion of the LI 99.7 7.9E-18 2.7E-22 150.1 3.4 109 401-533 4-117 (122)
16 1m3v_A FLIN4, fusion of the LI 99.7 2.3E-17 7.9E-22 147.1 4.2 108 315-462 4-115 (122)
17 1j2o_A FLIN2, fusion of rhombo 99.6 2.2E-16 7.7E-21 139.1 6.0 106 402-535 3-111 (114)
18 2dlo_A Thyroid receptor-intera 99.6 4.4E-16 1.5E-20 128.7 5.1 79 363-467 2-80 (81)
19 2ehe_A Four and A half LIM dom 99.6 7.6E-16 2.6E-20 127.4 5.2 79 363-467 1-81 (82)
20 2cuq_A Four and A half LIM dom 99.6 9E-16 3.1E-20 126.3 5.3 79 363-467 1-79 (80)
21 1x3h_A Leupaxin; paxillin fami 99.6 8.3E-16 2.8E-20 126.5 4.9 79 363-467 1-79 (80)
22 2ehe_A Four and A half LIM dom 99.5 2E-15 6.7E-20 124.9 4.3 78 448-533 1-78 (82)
23 1j2o_A FLIN2, fusion of rhombo 99.5 3.5E-15 1.2E-19 131.5 5.5 103 316-462 3-107 (114)
24 1x63_A Skeletal muscle LIM-pro 99.5 4.6E-15 1.6E-19 122.5 5.7 80 448-535 1-80 (82)
25 2egq_A FHL1 protein; LIM domai 99.5 3.4E-15 1.2E-19 121.9 4.7 76 448-528 1-76 (77)
26 2cuq_A Four and A half LIM dom 99.5 5.2E-15 1.8E-19 121.7 5.5 76 448-533 1-76 (80)
27 1x63_A Skeletal muscle LIM-pro 99.5 5.8E-15 2E-19 122.0 5.7 79 363-467 1-81 (82)
28 1x6a_A LIMK-2, LIM domain kina 99.5 5.9E-15 2E-19 121.8 5.2 79 364-467 2-81 (81)
29 1x3h_A Leupaxin; paxillin fami 99.5 7.3E-15 2.5E-19 120.8 5.5 75 448-532 1-75 (80)
30 1x6a_A LIMK-2, LIM domain kina 99.5 1.3E-14 4.6E-19 119.6 5.0 77 448-533 1-78 (81)
31 1iml_A CRIP, cysteine rich int 99.5 6.4E-14 2.2E-18 114.3 6.2 70 403-473 1-72 (76)
32 1x68_A FHL5 protein; four-and- 99.4 9.7E-14 3.3E-18 113.3 6.2 69 315-387 4-74 (76)
33 2dlo_A Thyroid receptor-intera 99.4 9.8E-14 3.3E-18 114.5 5.5 74 448-532 2-76 (81)
34 2egq_A FHL1 protein; LIM domai 99.4 6.5E-14 2.2E-18 114.3 4.2 72 363-460 1-77 (77)
35 1a7i_A QCRP2 (LIM1); LIM domai 99.4 6.9E-14 2.3E-18 115.5 3.5 72 400-472 5-77 (81)
36 1x68_A FHL5 protein; four-and- 99.4 1.2E-13 4E-18 112.8 4.8 67 402-469 5-75 (76)
37 1v6g_A Actin binding LIM prote 99.4 1.2E-13 4.2E-18 113.9 4.9 75 449-533 2-77 (81)
38 2cur_A Skeletal muscle LIM-pro 99.4 1.6E-13 5.3E-18 109.8 4.3 66 401-467 4-69 (69)
39 2d8z_A Four and A half LIM dom 99.4 2.3E-13 7.7E-18 109.0 5.1 65 402-467 5-69 (70)
40 2dar_A PDZ and LIM domain prot 99.4 2.2E-13 7.5E-18 114.8 5.1 66 401-467 24-89 (90)
41 1x4k_A Skeletal muscle LIM-pro 99.4 2E-13 6.9E-18 109.8 4.7 67 315-385 4-70 (72)
42 2cu8_A Cysteine-rich protein 2 99.4 2.5E-13 8.5E-18 110.8 5.3 69 398-467 5-75 (76)
43 1wyh_A SLIM 2, skeletal muscle 99.4 2.3E-13 7.8E-18 109.5 4.4 67 315-385 4-70 (72)
44 1iml_A CRIP, cysteine rich int 99.4 2.6E-13 8.9E-18 110.6 4.7 69 317-390 1-70 (76)
45 1wyh_A SLIM 2, skeletal muscle 99.4 3.3E-13 1.1E-17 108.6 5.2 65 402-467 5-71 (72)
46 1g47_A Pinch protein; LIM doma 99.4 2E-13 6.9E-18 111.2 3.8 69 313-385 8-76 (77)
47 1a7i_A QCRP2 (LIM1); LIM domai 99.4 2.4E-13 8E-18 112.2 3.6 72 315-391 6-77 (81)
48 1x4k_A Skeletal muscle LIM-pro 99.4 4.9E-13 1.7E-17 107.5 5.1 65 402-467 5-71 (72)
49 1x4l_A Skeletal muscle LIM-pro 99.4 4.3E-13 1.5E-17 108.1 4.7 67 314-384 3-71 (72)
50 2cur_A Skeletal muscle LIM-pro 99.3 4.9E-13 1.7E-17 106.9 3.8 66 314-385 3-68 (69)
51 1nyp_A Pinch protein; LIM doma 99.3 6.5E-13 2.2E-17 105.3 4.4 62 402-464 5-66 (66)
52 2dj7_A Actin-binding LIM prote 99.3 7.4E-13 2.5E-17 109.7 4.9 65 401-467 14-79 (80)
53 1x4l_A Skeletal muscle LIM-pro 99.3 8.8E-13 3E-17 106.3 4.8 64 401-465 4-71 (72)
54 2d8z_A Four and A half LIM dom 99.3 6.9E-13 2.4E-17 106.2 4.1 66 314-385 3-68 (70)
55 1x64_A Alpha-actinin-2 associa 99.3 9.6E-13 3.3E-17 110.7 5.2 65 401-466 24-88 (89)
56 2dar_A PDZ and LIM domain prot 99.3 6.9E-13 2.4E-17 111.8 4.2 66 314-385 23-88 (90)
57 2dj7_A Actin-binding LIM prote 99.3 1.1E-12 3.9E-17 108.5 4.8 65 315-385 14-78 (80)
58 1v6g_A Actin binding LIM prote 99.3 1.2E-12 4.2E-17 107.9 4.9 74 364-462 2-75 (81)
59 2cu8_A Cysteine-rich protein 2 99.3 1.4E-12 4.6E-17 106.4 5.1 66 315-385 8-74 (76)
60 1x62_A C-terminal LIM domain p 99.3 5.7E-13 2E-17 109.6 2.3 66 400-466 13-78 (79)
61 1g47_A Pinch protein; LIM doma 99.3 1.1E-12 3.7E-17 106.8 3.8 66 400-466 9-76 (77)
62 1nyp_A Pinch protein; LIM doma 99.3 1.1E-12 3.8E-17 103.9 3.7 62 315-382 4-65 (66)
63 1x61_A Thyroid receptor intera 99.3 1.6E-12 5.4E-17 104.6 4.5 59 315-373 4-62 (72)
64 2d8x_A Protein pinch; LIM doma 99.3 1.9E-12 6.4E-17 103.8 4.8 65 401-466 4-68 (70)
65 2cor_A Pinch protein; LIM doma 99.3 2E-12 6.9E-17 106.6 4.9 64 401-466 14-77 (79)
66 1x64_A Alpha-actinin-2 associa 99.3 4.1E-12 1.4E-16 106.8 6.3 63 316-384 25-87 (89)
67 2d8y_A Eplin protein; LIM doma 99.2 3.7E-12 1.3E-16 107.5 4.5 67 401-468 14-81 (91)
68 2d8x_A Protein pinch; LIM doma 99.2 4.2E-12 1.5E-16 101.7 4.1 58 314-373 3-60 (70)
69 3f6q_B LIM and senescent cell 99.2 4.2E-12 1.4E-16 101.5 3.8 60 314-373 9-68 (72)
70 1wig_A KIAA1808 protein; LIM d 99.2 9E-12 3.1E-16 101.2 5.9 67 460-535 3-69 (73)
71 2d8y_A Eplin protein; LIM doma 99.2 3.4E-12 1.2E-16 107.7 3.4 66 315-385 14-79 (91)
72 1wig_A KIAA1808 protein; LIM d 99.2 9E-12 3.1E-16 101.2 5.7 62 402-464 5-67 (73)
73 1x61_A Thyroid receptor intera 99.2 6.5E-12 2.2E-16 101.0 4.8 65 402-468 5-71 (72)
74 2l3k_A Rhombotin-2, linker, LI 99.2 8.5E-12 2.9E-16 111.1 5.2 69 318-390 10-79 (123)
75 1x62_A C-terminal LIM domain p 99.2 3E-12 1E-16 105.3 1.4 63 316-384 15-77 (79)
76 2l3k_A Rhombotin-2, linker, LI 99.2 1.2E-11 4.1E-16 110.2 5.3 71 404-475 10-83 (123)
77 2co8_A NEDD9 interacting prote 99.2 8.9E-12 3E-16 103.5 3.9 67 400-466 13-81 (82)
78 2cor_A Pinch protein; LIM doma 99.2 1.1E-11 3.8E-16 102.1 4.2 65 313-384 12-76 (79)
79 3f6q_B LIM and senescent cell 99.2 1.6E-11 5.4E-16 98.1 4.1 65 458-530 7-71 (72)
80 2iyb_E Testin, TESS, TES; LIM 99.2 2E-11 6.8E-16 96.8 4.6 58 316-373 2-62 (65)
81 2co8_A NEDD9 interacting prote 99.1 2.8E-11 9.7E-16 100.4 4.8 58 315-373 14-73 (82)
82 2l4z_A DNA endonuclease RBBP8, 99.1 2E-11 6.9E-16 109.2 3.3 58 315-373 60-119 (123)
83 2l4z_A DNA endonuclease RBBP8, 99.1 2.5E-11 8.4E-16 108.7 3.6 61 401-462 60-123 (123)
84 2iyb_E Testin, TESS, TES; LIM 99.1 5.3E-11 1.8E-15 94.3 4.1 58 402-460 2-64 (65)
85 1zfo_A LAsp-1; LIM domain, zin 96.7 0.00044 1.5E-08 47.1 1.4 28 317-345 4-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 96.2 0.00084 2.9E-08 45.7 0.3 29 462-496 3-31 (31)
87 4ap4_A E3 ubiquitin ligase RNF 58.5 5.8 0.0002 33.7 3.0 82 447-537 31-117 (133)
88 4ap4_A E3 ubiquitin ligase RNF 50.0 10 0.00034 32.2 3.1 25 449-473 98-124 (133)
89 2ysl_A Tripartite motif-contai 40.0 21 0.00071 27.2 3.2 45 428-474 20-69 (73)
90 3vk6_A E3 ubiquitin-protein li 38.9 38 0.0013 29.0 4.7 65 430-507 3-73 (101)
91 2djb_A Polycomb group ring fin 35.0 33 0.0011 26.2 3.6 47 428-475 15-63 (72)
92 1t1h_A Gspef-atpub14, armadill 34.6 32 0.0011 26.5 3.5 47 426-474 6-55 (78)
93 2ecy_A TNF receptor-associated 33.6 22 0.00074 26.7 2.3 44 429-474 16-62 (66)
94 1jm7_B BARD1, BRCA1-associated 33.4 39 0.0013 28.5 4.1 45 429-474 23-67 (117)
95 2ecm_A Ring finger and CHY zin 31.9 46 0.0016 23.6 3.8 45 429-473 6-54 (55)
96 2ct2_A Tripartite motif protei 31.9 38 0.0013 26.5 3.6 47 429-475 16-69 (88)
97 2ecv_A Tripartite motif-contai 31.8 40 0.0014 26.0 3.7 44 429-474 20-71 (85)
98 1jjd_A Metallothionein, SMTA; 31.8 18 0.00062 27.6 1.5 28 346-373 9-37 (55)
99 2ect_A Ring finger protein 126 31.0 54 0.0019 25.2 4.3 47 429-475 16-65 (78)
100 2jrp_A Putative cytoplasmic pr 29.4 16 0.00056 30.0 0.9 11 318-328 4-14 (81)
101 1e4u_A Transcriptional repress 28.2 33 0.0011 27.4 2.5 46 429-474 12-62 (78)
102 4hc9_A Trans-acting T-cell-spe 27.8 20 0.00067 31.2 1.2 11 363-373 24-34 (115)
103 2ecw_A Tripartite motif-contai 27.4 34 0.0012 26.4 2.5 45 428-474 19-71 (85)
104 2ecm_A Ring finger and CHY zin 26.2 58 0.002 23.0 3.5 16 518-533 28-43 (55)
105 1jm7_A BRCA1, breast cancer ty 25.7 43 0.0015 27.5 3.0 44 429-474 22-70 (112)
106 2d8t_A Dactylidin, ring finger 25.1 47 0.0016 25.2 2.9 45 428-474 15-61 (71)
107 4gne_A Histone-lysine N-methyl 24.6 1.7E+02 0.0059 24.9 6.6 42 316-372 15-60 (107)
108 3oue_A Cytochrome C family pro 24.5 9.8 0.00034 34.9 -1.4 75 450-529 55-143 (158)
109 1t1h_A Gspef-atpub14, armadill 24.3 48 0.0016 25.5 2.9 34 495-532 8-41 (78)
110 1iym_A EL5; ring-H2 finger, ub 24.1 72 0.0025 22.6 3.6 17 517-533 27-43 (55)
111 2eqg_A Tumor necrosis factor, 23.9 63 0.0021 23.6 3.0 21 513-533 22-42 (49)
112 1bor_A Transcription factor PM 23.1 67 0.0023 23.4 3.3 43 429-474 7-49 (56)
113 2yur_A Retinoblastoma-binding 22.9 54 0.0019 25.2 2.9 33 496-532 16-49 (74)
114 3l11_A E3 ubiquitin-protein li 22.8 38 0.0013 28.3 2.1 43 429-473 16-61 (115)
115 2yur_A Retinoblastoma-binding 22.7 71 0.0024 24.4 3.6 45 428-474 15-64 (74)
116 2ysm_A Myeloid/lymphoid or mix 22.6 81 0.0028 26.5 4.2 76 421-528 29-104 (111)
117 2gvi_A Conserved hypothetical 22.1 21 0.00072 33.9 0.4 30 496-528 173-202 (204)
118 2gvi_A Conserved hypothetical 22.1 20 0.0007 34.0 0.3 29 345-373 173-201 (204)
119 3nw0_A Non-structural maintena 21.9 75 0.0026 30.8 4.3 30 315-345 179-208 (238)
120 4ayc_A E3 ubiquitin-protein li 21.8 49 0.0017 28.7 2.7 42 429-472 54-97 (138)
121 1x4j_A Ring finger protein 38; 21.5 65 0.0022 24.6 3.1 47 429-475 24-73 (75)
122 2ecn_A Ring finger protein 141 21.5 38 0.0013 25.5 1.7 45 428-475 15-61 (70)
123 3py7_A Maltose-binding peripla 21.1 50 0.0017 34.9 3.1 29 345-373 401-441 (523)
124 2bay_A PRE-mRNA splicing facto 21.1 44 0.0015 25.3 1.9 39 495-537 3-42 (61)
125 2y43_A E3 ubiquitin-protein li 20.6 48 0.0016 26.9 2.2 44 429-473 23-68 (99)
126 2djb_A Polycomb group ring fin 20.4 67 0.0023 24.4 2.9 34 496-532 16-49 (72)
127 2csy_A Zinc finger protein 183 20.2 52 0.0018 25.6 2.3 20 487-506 33-60 (81)
No 1
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.92 E-value=5.7e-26 Score=217.73 Aligned_cols=152 Identities=28% Similarity=0.560 Sum_probs=128.9
Q ss_pred ccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccccccccccchhhhccccchhhhh
Q psy14113 316 FGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCAICGHLIMEMY 395 (543)
Q Consensus 316 ~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~~~~~~~fa~kCa~C~~~I~~~~ 395 (543)
.++|.+|++.|...+ .+.++|+.||++||+|..|+++|.+..|+.++|++||+.||. ++|+++|..|++......
T Consensus 7 ~~~C~~C~~~I~~~~-~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~----~~f~~~c~~c~~~~g~~~ 81 (192)
T 1b8t_A 7 GKKCGVCQKAVYFAE-EVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYG----KKYGPKGKGKGMGAGTLS 81 (192)
T ss_dssp CEECTTTCCEECSSC-CEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHH----HHHSCCCCCCCCCCCCCC
T ss_pred CCcCccCCCeeccee-EEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhH----hhcCccccccccccccEe
Confidence 468999999997544 578999999999999999999999989999999999999998 789999988875421000
Q ss_pred ------------------------ccc---ccccccccccCcccee-eeeeccCccccCcCccCCCCCCCCCCCceeeee
Q psy14113 396 ------------------------SGF---QQTAEKCAICGHLIME-MILQAMGKSYHPGCFRCCLCNECLDGVPFTVDV 447 (543)
Q Consensus 396 ------------------------s~~---~~~~~~C~~C~k~I~~-~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~ 447 (543)
+.+ -.+.++|.+|++.|.+ +.+.++++.||.+||+|..|+++|.+..|+ .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~ 160 (192)
T 1b8t_A 82 TDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLA-DK 160 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEE-EE
T ss_pred cCCCcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCccc-cc
Confidence 000 0125679999999984 677899999999999999999999877775 68
Q ss_pred cCceeccchhhhhccccccccCCCCC
Q psy14113 448 DNKIYCVNDYHRMFAPKCAACGKGIT 473 (543)
Q Consensus 448 dGkpYC~~CY~k~f~pkC~~C~k~I~ 473 (543)
+|++||+.||.++|+++|.+|++++-
T Consensus 161 ~g~~yC~~cy~~~f~~kc~~C~~~~g 186 (192)
T 1b8t_A 161 DGEIYCKGCYAKNFGPKGFGFGQGAG 186 (192)
T ss_dssp TTEEEEHHHHHHHTCCCCCCCCCCCC
T ss_pred CCEEeCHHHHHHhcCCcCCCCCCccc
Confidence 99999999999999999999999863
No 2
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.90 E-value=2.5e-24 Score=193.38 Aligned_cols=123 Identities=25% Similarity=0.546 Sum_probs=108.7
Q ss_pred cccccccCccceee-eeeccCccccCcCccCCCCCCCCC--CCceeeeecCceeccchhhhhccc--cccccCCCCCCCC
Q psy14113 402 AEKCAICGHLIMEM-ILQAMGKSYHPGCFRCCLCNECLD--GVPFTVDVDNKIYCVNDYHRMFAP--KCAACGKGITPVE 476 (543)
Q Consensus 402 ~~~C~~C~k~I~~~-~v~a~gk~wH~~CF~Cs~C~~~L~--g~~f~v~~dGkpYC~~CY~k~f~p--kC~~C~k~I~~~e 476 (543)
.++|.+|+++|.+. ++.++++.||++||+|..|+++|. +..|+ .++|++||+.||.++|++ +|..|+++|.+.+
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~-~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e 80 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLY-YKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE 80 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEE-EETTEEECHHHHHHHHCCCEECTTTCCEECTTS
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEE-EECCEEeecCchhhhCCCccChhhcCCccCccc
Confidence 35789999999875 789999999999999999999996 35664 689999999999999999 9999999998643
Q ss_pred CCcceEEEEeCCCcccCCCCccCCCCCcCCCCCCcceeecCCcccCchhhhhhhhc
Q psy14113 477 GTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLMCRACHLSHLSR 532 (543)
Q Consensus 477 g~~e~~~v~a~dk~yH~~CF~C~~C~k~L~~~~~~~~~~~dg~~yC~~C~~~~~~~ 532 (543)
..+.++++.||++||+|..|++.|..+ ..|+..++++||..|+.+++..
T Consensus 81 -----~~~~a~~~~~H~~CF~C~~C~~~L~~g--~~f~~~~~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 81 -----MTMRVKDKVYHLECFKCAACQKHFCVG--DRYLLINSDIVCEQDIYEWTKI 129 (131)
T ss_dssp -----EEEEETTEEEEGGGCBCTTTCCBCCTT--CEEEEETTEEEEGGGHHHHHHH
T ss_pred -----eeEeeCCceECccCcccCCCCCCCCCC--CEEEEECCEEEcHHHHHHHhhc
Confidence 357789999999999999999999755 3689999999999999988765
No 3
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.89 E-value=1.1e-23 Score=188.25 Aligned_cols=119 Identities=27% Similarity=0.569 Sum_probs=105.4
Q ss_pred cccccccCcccee-eeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhccccccccCCCCCCCCCCcc
Q psy14113 402 AEKCAICGHLIME-MILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAACGKGITPVEGTEE 480 (543)
Q Consensus 402 ~~~C~~C~k~I~~-~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~~C~k~I~~~eg~~e 480 (543)
.++|.+|++.|.+ +++.++++.||++||+|..|+++|.+..|+ .++|++||+.||.++|+++|.+|+++|.+.+
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~---- 77 (126)
T 2xqn_T 3 KPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYV-MVNDKPVCKPCYVKNHAVVCQGCHNAIDPEV---- 77 (126)
T ss_dssp CCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEE-EETTEEEEHHHHHHHSCCBCTTTCSBCCTTS----
T ss_pred CCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEE-eECCEEechHHhCcCcCccCcccCCcCCcCc----
Confidence 4578899999984 688999999999999999999999988774 6899999999999999999999999999743
Q ss_pred eEEEEeCCCccc--CCCCccCCCCCcCCCCCCcceeecCCcccCchhhhhh
Q psy14113 481 TVRVVSMDKDFH--VDCYMCEDCGLQLTDEPDKRCYPLQGRLMCRACHLSH 529 (543)
Q Consensus 481 ~~~v~a~dk~yH--~~CF~C~~C~k~L~~~~~~~~~~~dg~~yC~~C~~~~ 529 (543)
..|.++++.|| ++||+|..|++.|.++ .|+..++++||+.++.++
T Consensus 78 -~~~~a~~~~~H~~~~CF~C~~C~~~l~~~---~f~~~~~~~yC~~~~~~~ 124 (126)
T 2xqn_T 78 -QRVTYNNFSWHASTECFLCSCCSKCLIGQ---KFMPVEGMVFCSVECKKR 124 (126)
T ss_dssp -CEEEETTEEEESSTTTSBCTTTCCBCTTS---EEEEETTEEESSHHHHHS
T ss_pred -eEEECCCCEeeCCCCCcCcCCCCCccCCC---eeEeECCEEcchHHhhhh
Confidence 25789999999 9999999999999853 788899999999665554
No 4
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.89 E-value=1.1e-23 Score=188.08 Aligned_cols=120 Identities=25% Similarity=0.538 Sum_probs=104.9
Q ss_pred cccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccccccccccchhhhccccchhhh
Q psy14113 315 YFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCAICGHLIMEM 394 (543)
Q Consensus 315 ~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~~~~~~~fa~kCa~C~~~I~~~ 394 (543)
+.++|.+|++.|.+. .++.++|+.||.+||+|..|+++|.+..|+.++|++||+.||. ++|+++|
T Consensus 2 ~~~~C~~C~~~I~~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~----~~~~~~C---------- 66 (126)
T 2xqn_T 2 EKPRCAGCDELIFSN-EYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYV----KNHAVVC---------- 66 (126)
T ss_dssp CCCBBTTTSSBCCSS-CEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHH----HHSCCBC----------
T ss_pred cCCCCccCCCEeCCc-eEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhC----cCcCccC----------
Confidence 357899999999854 4789999999999999999999999889999999999999997 5666666
Q ss_pred hcccccccccccccCccce--eeeeeccCcccc--CcCccCCCCCCCCCCCceeeeecCceeccchhhhhc
Q psy14113 395 YSGFQQTAEKCAICGHLIM--EMILQAMGKSYH--PGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMF 461 (543)
Q Consensus 395 ~s~~~~~~~~C~~C~k~I~--~~~v~a~gk~wH--~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f 461 (543)
.+|+++|. +.++.++++.|| ++||+|..|+++|.+..|. ..+|++||+.+|.++|
T Consensus 67 -----------~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~-~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 67 -----------QGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFM-PVEGMVFCSVECKKRM 125 (126)
T ss_dssp -----------TTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEE-EETTEEESSHHHHHSC
T ss_pred -----------cccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeE-eECCEEcchHHhhhhc
Confidence 56666666 468899999999 9999999999999988885 5799999998988876
No 5
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.89 E-value=1.8e-23 Score=198.66 Aligned_cols=122 Identities=30% Similarity=0.651 Sum_probs=105.5
Q ss_pred cccccccccCccceee-eeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhccccccccCCCCCCCCCC
Q psy14113 400 QTAEKCAICGHLIMEM-ILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAACGKGITPVEGT 478 (543)
Q Consensus 400 ~~~~~C~~C~k~I~~~-~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~~C~k~I~~~eg~ 478 (543)
...++|.+|+++|.+. ++.++++.||++||+|..|+++|.+..| .++|++||+.||.++|+++|..|+++|.+.+.
T Consensus 58 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f--~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~- 134 (182)
T 2jtn_A 58 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF--SRGESVYCKDDFFKRFGTKCAACQLGIPPTQV- 134 (182)
T ss_dssp CSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE--EETTEEECHHHHHHTTSCCCTTTCCCCCSSCC-
T ss_pred CCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce--eECCEeeecCccccccccccccCCCccCCCce-
Confidence 3457889999999874 6889999999999999999999998766 47999999999999999999999999987542
Q ss_pred cceEEEEeCCCcccCCCCccCCCCCcCCCCCCcceee-cCCcccCchhhhhhh
Q psy14113 479 EETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYP-LQGRLMCRACHLSHL 530 (543)
Q Consensus 479 ~e~~~v~a~dk~yH~~CF~C~~C~k~L~~~~~~~~~~-~dg~~yC~~C~~~~~ 530 (543)
.+.++++.||++||+|..|++.|..+ ..||. .++++||+.|+.++.
T Consensus 135 ----v~~a~~~~~H~~CF~C~~C~~~L~~g--~~f~~~~~g~~yC~~cy~~~~ 181 (182)
T 2jtn_A 135 ----VRRAQDFVYHLHCFACVVCKRQLATG--DEFYLMEDSRLVCKADYETAK 181 (182)
T ss_dssp ----CCEETTEECCTTTCCCTTTCCCCCTT--CEEEECTTSCEECHHHHHHHT
T ss_pred ----EEecCCCCEEeCCCcCCCCCCCCCCC--CceEEccCCEEECHHHHHHhh
Confidence 35689999999999999999999865 35664 489999999997653
No 6
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.89 E-value=7.4e-24 Score=202.52 Aligned_cols=159 Identities=24% Similarity=0.521 Sum_probs=115.3
Q ss_pred cccccccCCceeecCcceeeccCceeccCCcccCccCCCCCC--CceeeeCCeeeeccccccccccccchhhhccccchh
Q psy14113 315 YFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRG--KAFYNVHGRVYCEEDYLYSGFQQTAEKCAICGHLIM 392 (543)
Q Consensus 315 ~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~--~~f~~~dG~~yC~~cY~~~~~~~fa~kCa~C~~~I~ 392 (543)
..++|.+|++.|.+. .++.++++.||.+||+|..|+++|.. ..|+.++|++||+.||. ++|+++
T Consensus 4 ~~~~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~----~~~~~~--------- 69 (188)
T 1rut_X 4 SWKRCAGCGGKIADR-FLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI----RLFGNS--------- 69 (188)
T ss_dssp CCCBBTTTCCBCCCS-EEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHH----HHHSCC---------
T ss_pred CCCcCccCCCEeCCc-eeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccc----cccccC---------
Confidence 457899999999864 36899999999999999999999985 68999999999999997 455541
Q ss_pred hhhcccccccccccccCccce--eeeeeccCccccCcCccCCCCCCCCC-CCceeeeecCceeccchhhhhccccccccC
Q psy14113 393 EMYSGFQQTAEKCAICGHLIM--EMILQAMGKSYHPGCFRCCLCNECLD-GVPFTVDVDNKIYCVNDYHRMFAPKCAACG 469 (543)
Q Consensus 393 ~~~s~~~~~~~~C~~C~k~I~--~~~v~a~gk~wH~~CF~Cs~C~~~L~-g~~f~v~~dGkpYC~~CY~k~f~pkC~~C~ 469 (543)
.+|..|++.|. +.++.++++.||++||+|..|++.|. +..|+ ..++++||+.||.++++++|...+
T Consensus 70 ----------~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~-~~~g~~yC~~c~~~~~~~~~~~~g 138 (188)
T 1rut_X 70 ----------GACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFH-YINGSLFCEHDRPTALINGHLNSG 138 (188)
T ss_dssp ----------EECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEE-EETTEEEEGGGCCTTTC-------
T ss_pred ----------CccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEE-EECCeEECHHHHHHHhcccccccC
Confidence 14567777776 46788999999999999999999996 56675 579999999999999999998876
Q ss_pred CCCCCCCCCcceEE---EEeCCCcccCCCCcc
Q psy14113 470 KGITPVEGTEETVR---VVSMDKDFHVDCYMC 498 (543)
Q Consensus 470 k~I~~~eg~~e~~~---v~a~dk~yH~~CF~C 498 (543)
..-.......+.+. ...++..||+++.+.
T Consensus 139 ~~~~~~~~~~~v~vvgep~l~g~~~~~~~~r~ 170 (188)
T 1rut_X 139 GSGGSGGSGGDVMVVGEPTLMGGEFGDEDERL 170 (188)
T ss_dssp ---------CCCEECCCCEETTCCCCCTTEEE
T ss_pred CCCcccccCCcccccCCCcccCCCCCCCCCce
Confidence 53211111111111 124677788877765
No 7
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.88 E-value=1.5e-23 Score=188.34 Aligned_cols=123 Identities=27% Similarity=0.609 Sum_probs=103.6
Q ss_pred ccccccCCceeecCcceeeccCceeccCCcccCccCCCCC--CCceeeeCCeeeeccccccccccccchhhhccccchhh
Q psy14113 316 FGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALR--GKAFYNVHGRVYCEEDYLYSGFQQTAEKCAICGHLIME 393 (543)
Q Consensus 316 ~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~--~~~f~~~dG~~yC~~cY~~~~~~~fa~kCa~C~~~I~~ 393 (543)
.++|.+|+++|.+. .++.++++.||++||+|..|+.+|. +..|+.++|++||+.||. ++|++
T Consensus 2 ~~~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~----~~~~~----------- 65 (131)
T 2xjy_A 2 LLTCGGCQQNIGDR-YFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL----RLFGQ----------- 65 (131)
T ss_dssp CCBBTTTCCBCCSS-EEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHH----HHHCC-----------
T ss_pred cccCcCCCCEeCCc-EEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchh----hhCCC-----------
Confidence 46899999999864 3689999999999999999999996 368999999999999997 45554
Q ss_pred hhcccccccccccccCcccee--eeeeccCccccCcCccCCCCCCCCC-CCceeeeecCceeccchhhhhccc
Q psy14113 394 MYSGFQQTAEKCAICGHLIME--MILQAMGKSYHPGCFRCCLCNECLD-GVPFTVDVDNKIYCVNDYHRMFAP 463 (543)
Q Consensus 394 ~~s~~~~~~~~C~~C~k~I~~--~~v~a~gk~wH~~CF~Cs~C~~~L~-g~~f~v~~dGkpYC~~CY~k~f~p 463 (543)
..+|.+|++.|.+ .++.++++.||++||+|..|++.|. +..|+ ..+|++||..||.++|+.
T Consensus 66 --------~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~-~~~~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 66 --------DGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYL-LINSDIVCEQDIYEWTKI 129 (131)
T ss_dssp --------CEECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEE-EETTEEEEGGGHHHHHHH
T ss_pred --------ccChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEE-EECCEEEcHHHHHHHhhc
Confidence 0145667777763 6889999999999999999999995 66675 579999999999998764
No 8
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.88 E-value=1.9e-23 Score=196.25 Aligned_cols=146 Identities=24% Similarity=0.535 Sum_probs=111.8
Q ss_pred ccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccccccccccchhhhccccchhhhh
Q psy14113 316 FGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCAICGHLIMEMY 395 (543)
Q Consensus 316 ~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~~~~~~~fa~kCa~C~~~I~~~~ 395 (543)
.++|.+|++.|.+. .++.++|+.||.+||+|..|+++|.+.. +.++|++||+.||. ++|+++|
T Consensus 6 ~~~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~----~~f~~~C----------- 68 (169)
T 2rgt_A 6 IPMCAGCDQHILDR-FILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFF----KRFGTKC----------- 68 (169)
T ss_dssp -CBBSSSSSBCCSS-SCEECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHH----HHHSCBC-----------
T ss_pred CCccccCCCccCCc-EEEEECCcEEccccCccCCCCCcCCCCC-cccCCeeeeccccc----ccccccc-----------
Confidence 56899999999865 3688999999999999999999999766 58999999999997 5677766
Q ss_pred cccccccccccccCcccee--eeeeccCccccCcCccCCCCCCCCC-CCceeeeecCceeccchhhhhcccccc--ccCC
Q psy14113 396 SGFQQTAEKCAICGHLIME--MILQAMGKSYHPGCFRCCLCNECLD-GVPFTVDVDNKIYCVNDYHRMFAPKCA--ACGK 470 (543)
Q Consensus 396 s~~~~~~~~C~~C~k~I~~--~~v~a~gk~wH~~CF~Cs~C~~~L~-g~~f~v~~dGkpYC~~CY~k~f~pkC~--~C~k 470 (543)
.+|++.|.+ .++.++++.||.+||+|..|++.|. +..|++..+|++||+.||.+++...+. ++++
T Consensus 69 ----------~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~~~~~~~~r 138 (169)
T 2rgt_A 69 ----------AACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSGGSGGSG 138 (169)
T ss_dssp ----------TTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC--------
T ss_pred ----------cccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhccCCCCCCcC
Confidence 455555543 4678999999999999999999997 666765568999999999998876543 3333
Q ss_pred CCCCCCCCcceEEEEeCCCcccCCCCc
Q psy14113 471 GITPVEGTEETVRVVSMDKDFHVDCYM 497 (543)
Q Consensus 471 ~I~~~eg~~e~~~v~a~dk~yH~~CF~ 497 (543)
+.+ .+.+....+|...|.
T Consensus 139 prt---------~~~~~q~~~l~~~f~ 156 (169)
T 2rgt_A 139 GGT---------PMVAASPERHDGGLQ 156 (169)
T ss_dssp --E---------EEECCCCEECCSSCC
T ss_pred CCC---------cccHHHHHHHHHHHh
Confidence 332 245555666776665
No 9
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.88 E-value=3e-23 Score=194.95 Aligned_cols=124 Identities=31% Similarity=0.653 Sum_probs=107.5
Q ss_pred ccccccccCccceee-eeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhccccccccCCCCCCCCCCc
Q psy14113 401 TAEKCAICGHLIMEM-ILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAACGKGITPVEGTE 479 (543)
Q Consensus 401 ~~~~C~~C~k~I~~~-~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~~C~k~I~~~eg~~ 479 (543)
..++|.+|++.|.+. ++.++++.||++||+|..|+++|.+..| .++|++||+.||.++|+++|.+|+++|.+.+
T Consensus 5 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f--~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~--- 79 (169)
T 2rgt_A 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF--SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ--- 79 (169)
T ss_dssp --CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE--ESSSCEECHHHHHHHHSCBCTTTCCBCCTTS---
T ss_pred CCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc--ccCCeeeecccccccccccccccccccCCCc---
Confidence 357899999999875 6889999999999999999999998765 4799999999999999999999999998743
Q ss_pred ceEEEEeCCCcccCCCCccCCCCCcCCCCCCcceee-cCCcccCchhhhhhhhcc
Q psy14113 480 ETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYP-LQGRLMCRACHLSHLSRH 533 (543)
Q Consensus 480 e~~~v~a~dk~yH~~CF~C~~C~k~L~~~~~~~~~~-~dg~~yC~~C~~~~~~~~ 533 (543)
+.+.++++.||++||+|..|++.|..+ ..||. .++++||+.|+.++++..
T Consensus 80 --~v~~a~~~~~H~~CF~C~~C~~~L~~g--~~f~~~~~g~~~C~~c~~~~~~~~ 130 (169)
T 2rgt_A 80 --VVRRAQDFVYHLHCFACVVCKRQLATG--DEFYLMEDSRLVCKADYETAKQGG 130 (169)
T ss_dssp --EEEEETTEEEEGGGCBCTTTCCBCCTT--CEEEECTTSCEEEHHHHHHHHHCC
T ss_pred --EEEEcCCceEeeCCCcCCCCCCCCCCC--CceEEccCCeEECHHHHHHHhhcc
Confidence 345789999999999999999999865 35665 589999999999888763
No 10
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.87 E-value=3.5e-23 Score=197.84 Aligned_cols=124 Identities=29% Similarity=0.638 Sum_probs=107.9
Q ss_pred cccccccCccceee-eeeccCccccCcCccCCCCCCCCCC--CceeeeecCceeccchhhhhccc--cccccCCCCCCCC
Q psy14113 402 AEKCAICGHLIMEM-ILQAMGKSYHPGCFRCCLCNECLDG--VPFTVDVDNKIYCVNDYHRMFAP--KCAACGKGITPVE 476 (543)
Q Consensus 402 ~~~C~~C~k~I~~~-~v~a~gk~wH~~CF~Cs~C~~~L~g--~~f~v~~dGkpYC~~CY~k~f~p--kC~~C~k~I~~~e 476 (543)
.++|.+|++.|.+. ++.++++.||++||+|..|+++|.. ..|+ .++|++||+.||.++|++ +|..|+++|.+.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~-~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e 83 (188)
T 1rut_X 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRLFGNSGACSACGQSIPASE 83 (188)
T ss_dssp CCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEE-EETTEEECHHHHHHHHSCCEECTTTCCEECTTS
T ss_pred CCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEE-EeCCccccccccccccccCCccccCCCccccCc
Confidence 46789999999875 6899999999999999999999974 5664 689999999999999998 7999999998653
Q ss_pred CCcceEEEEeCCCcccCCCCccCCCCCcCCCCCCcceeecCCcccCchhhhhhhhcc
Q psy14113 477 GTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLMCRACHLSHLSRH 533 (543)
Q Consensus 477 g~~e~~~v~a~dk~yH~~CF~C~~C~k~L~~~~~~~~~~~dg~~yC~~C~~~~~~~~ 533 (543)
..+.++++.||++||+|..|++.|..+ ..|+..++++||+.|+.+++...
T Consensus 84 -----~~i~a~~~~~H~~CF~C~~C~~~L~~g--~~f~~~~g~~yC~~c~~~~~~~~ 133 (188)
T 1rut_X 84 -----LVMRAQGNVYHLKCFTCSTCRNRLVPG--DRFHYINGSLFCEHDRPTALING 133 (188)
T ss_dssp -----EEEEETTEEECGGGCBCTTTCCBCCTT--CEEEEETTEEEEGGGCCTTTC--
T ss_pred -----EEEEcCCCEEeCCCCeECCCCCCCCCC--CeEEEECCeEECHHHHHHHhccc
Confidence 346789999999999999999999765 36888999999999999887653
No 11
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.87 E-value=1.2e-22 Score=194.64 Aligned_cols=123 Identities=28% Similarity=0.751 Sum_probs=108.6
Q ss_pred ccccccccCccce-eeeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhcccc---------------
Q psy14113 401 TAEKCAICGHLIM-EMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPK--------------- 464 (543)
Q Consensus 401 ~~~~C~~C~k~I~-~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pk--------------- 464 (543)
+.++|.+|++.|. ++.+.++++.||++||+|..|+++|.+..|+ .++|++||+.||.++|+++
T Consensus 6 ~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~ 84 (192)
T 1b8t_A 6 GGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVA-VHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDK 84 (192)
T ss_dssp CCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEE-EETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCC
T ss_pred CCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeE-ecCCEeeChhhhHhhcCccccccccccccEecCC
Confidence 3578999999997 5678899999999999999999999988775 5799999999999999876
Q ss_pred ---------------------------------ccccCCCCCCCCCCcceEEEEeCCCcccCCCCccCCCCCcCCCCCCc
Q psy14113 465 ---------------------------------CAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDK 511 (543)
Q Consensus 465 ---------------------------------C~~C~k~I~~~eg~~e~~~v~a~dk~yH~~CF~C~~C~k~L~~~~~~ 511 (543)
|.+|+++|...+ .|.++++.||++||+|..|++.|..+
T Consensus 85 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~------~v~a~~~~~H~~CF~C~~C~~~L~~~--- 155 (192)
T 1b8t_A 85 GESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAE------KVIGAGKSWHKSCFRCAKCGKSLEST--- 155 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSS------CEEETTEEECTTTCBCTTTCCBCCSS---
T ss_pred CcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcE------EEecCCCccchhcCCccccCCCCCCC---
Confidence 778889997643 36789999999999999999999875
Q ss_pred ceeecCCcccCchhhhhhhhcc
Q psy14113 512 RCYPLQGRLMCRACHLSHLSRH 533 (543)
Q Consensus 512 ~~~~~dg~~yC~~C~~~~~~~~ 533 (543)
.|+..++++||+.|+.+++...
T Consensus 156 ~~~~~~g~~yC~~cy~~~f~~k 177 (192)
T 1b8t_A 156 TLADKDGEIYCKGCYAKNFGPK 177 (192)
T ss_dssp SEEEETTEEEEHHHHHHHTCCC
T ss_pred cccccCCEEeCHHHHHHhcCCc
Confidence 5899999999999999988764
No 12
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.85 E-value=4.4e-22 Score=189.16 Aligned_cols=119 Identities=26% Similarity=0.646 Sum_probs=100.2
Q ss_pred cccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccccccccccchhhhccccchhhh
Q psy14113 315 YFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCAICGHLIMEM 394 (543)
Q Consensus 315 ~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~~~~~~~fa~kCa~C~~~I~~~ 394 (543)
..++|.+|+++|.+. .++.++++.||.+||+|..|+++|.+.. |.++|++||+.||. ++|+++|
T Consensus 59 ~~~~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~----~~f~~kC---------- 122 (182)
T 2jtn_A 59 EIPMCAGCDQHILDR-FILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFF----KRFGTKC---------- 122 (182)
T ss_dssp SCCBCBTSSSBCCCS-EEEEETTEEECSSTTSCTTTCCCCSSCC-EEETTEEECHHHHH----HTTSCCC----------
T ss_pred CCCcCccCCCCccCc-eeEEecCCeEccccCccCCCCCccCCCc-eeECCEeeecCccc----ccccccc----------
Confidence 457899999999864 3688999999999999999999999776 47999999999997 5677766
Q ss_pred hcccccccccccccCcccee--eeeeccCccccCcCccCCCCCCCCC-CCceeeeecCceeccchhhhh
Q psy14113 395 YSGFQQTAEKCAICGHLIME--MILQAMGKSYHPGCFRCCLCNECLD-GVPFTVDVDNKIYCVNDYHRM 460 (543)
Q Consensus 395 ~s~~~~~~~~C~~C~k~I~~--~~v~a~gk~wH~~CF~Cs~C~~~L~-g~~f~v~~dGkpYC~~CY~k~ 460 (543)
.+|++.|.+ .++.++++.||++||+|..|++.|. +..|++..+|++||+.||.++
T Consensus 123 -----------~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 123 -----------AACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp -----------TTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred -----------ccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 455555543 4667999999999999999999997 566765568999999999875
No 13
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.82 E-value=7.7e-21 Score=163.25 Aligned_cols=96 Identities=29% Similarity=0.522 Sum_probs=86.2
Q ss_pred ccccccccCccce--eeeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhccccccccCCCCCCCCCC
Q psy14113 401 TAEKCAICGHLIM--EMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAACGKGITPVEGT 478 (543)
Q Consensus 401 ~~~~C~~C~k~I~--~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~~C~k~I~~~eg~ 478 (543)
+.++|.+|++.|. +.++.++++.||++||+|..|+++|.+..|+ .++|++||+.||.++|+++|.+|+++|.+.+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~-- 80 (101)
T 2cup_A 4 GSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFV-AKDNKILCNKCTTREDSPKCKGCFKAIVAGD-- 80 (101)
T ss_dssp CCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCE-EETTEEECHHHHTTCCCCBCSSSCCBCCSSS--
T ss_pred CCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeE-CcCCEEEChhHhhhhcCCccccCCCccccCC--
Confidence 3567899999996 5789999999999999999999999887774 6899999999999999999999999998643
Q ss_pred cceEEEEeCCCcccCCCCccCCCC
Q psy14113 479 EETVRVVSMDKDFHVDCYMCEDCG 502 (543)
Q Consensus 479 ~e~~~v~a~dk~yH~~CF~C~~C~ 502 (543)
..|.++++.||++||+|..|+
T Consensus 81 ---~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 81 ---QNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp ---CEEESSSCEEETTTCCCTTCC
T ss_pred ---eEEEeCCcchHHhCCCCCCCC
Confidence 257899999999999999996
No 14
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.81 E-value=2.8e-20 Score=159.75 Aligned_cols=97 Identities=19% Similarity=0.464 Sum_probs=84.4
Q ss_pred ccccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccccccccccchhhhccccchhh
Q psy14113 314 EYFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCAICGHLIME 393 (543)
Q Consensus 314 ~~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~~~~~~~fa~kCa~C~~~I~~ 393 (543)
.+..+|.+|++.|...+.++.++++.||.+||+|..|+++|.+..|+.++|++||+.||. ++|+++|
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~----~~~~~~C--------- 69 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTT----REDSPKC--------- 69 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHT----TCCCCBC---------
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhh----hhcCCcc---------
Confidence 356789999999975456899999999999999999999999888999999999999997 5666666
Q ss_pred hhcccccccccccccCccce--eeeeeccCccccCcCccCCCCC
Q psy14113 394 MYSGFQQTAEKCAICGHLIM--EMILQAMGKSYHPGCFRCCLCN 435 (543)
Q Consensus 394 ~~s~~~~~~~~C~~C~k~I~--~~~v~a~gk~wH~~CF~Cs~C~ 435 (543)
.+|+++|. +.++.++++.||++||+|..|+
T Consensus 70 ------------~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 70 ------------KGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp ------------SSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred ------------ccCCCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 66666666 5689999999999999999995
No 15
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=7.9e-18 Score=150.15 Aligned_cols=109 Identities=25% Similarity=0.416 Sum_probs=89.4
Q ss_pred ccccccccCccceee-eeeccCccccCcCccCCCCCCCCC--CCceeeeecCceeccchhhhhccc--cccccCCCCCCC
Q psy14113 401 TAEKCAICGHLIMEM-ILQAMGKSYHPGCFRCCLCNECLD--GVPFTVDVDNKIYCVNDYHRMFAP--KCAACGKGITPV 475 (543)
Q Consensus 401 ~~~~C~~C~k~I~~~-~v~a~gk~wH~~CF~Cs~C~~~L~--g~~f~v~~dGkpYC~~CY~k~f~p--kC~~C~k~I~~~ 475 (543)
..++|.+|++.|.+. ++.++++.||++||+|..|+++|. +..| +.++|++||+.||.++|++ +|++|+++|.+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~-~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECC-EEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeE-EEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 356789999999875 688999999999999999999997 3556 4689999999999999999 999999999863
Q ss_pred CCCcceEEEEeCCCcccCCCCccCCCCCcCCCCCCcceeecCCcccCchhhhhhhhcc
Q psy14113 476 EGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLMCRACHLSHLSRH 533 (543)
Q Consensus 476 eg~~e~~~v~a~dk~yH~~CF~C~~C~k~L~~~~~~~~~~~dg~~yC~~C~~~~~~~~ 533 (543)
+ +++.++ ..|.+ +.|+..++++||+.|+.++...+
T Consensus 83 ~-------~~~~g~-------------~~l~g---~~f~~~~~~~yC~~~~~~~~~~~ 117 (122)
T 1m3v_A 83 D-------VMVVGE-------------PTLMG---GEFGDEDERLITRLENTQFDAAN 117 (122)
T ss_dssp E-------SSSSSS-------------SSCCS---CTTCCTTCCCCEECTTTTTTCCS
T ss_pred h-------eEEcCC-------------cCCCC---CccEecCCEeEccCcchhchhhc
Confidence 2 344442 23444 36888999999999999887654
No 16
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=2.3e-17 Score=147.15 Aligned_cols=108 Identities=25% Similarity=0.465 Sum_probs=86.8
Q ss_pred cccccccCCceeecCcceeeccCceeccCCcccCccCCCCC--CCceeeeCCeeeeccccccccccccch--hhhccccc
Q psy14113 315 YFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALR--GKAFYNVHGRVYCEEDYLYSGFQQTAE--KCAICGHL 390 (543)
Q Consensus 315 ~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~--~~~f~~~dG~~yC~~cY~~~~~~~fa~--kCa~C~~~ 390 (543)
..++|.+|++.|.+.+ ++.++++.||++||+|..|+.+|. +..|+.++|++||+.||. ++|++ +|
T Consensus 4 ~~~~C~~C~~~I~~~~-~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~----~~f~~~~~C------ 72 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRF-LLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI----RLFGNSGAG------ 72 (122)
T ss_dssp CCCCBSSSSSCCCSSC-CEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHH----HHHCCCCSS------
T ss_pred CCCCCcccCCEeCCcE-EEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHH----HHcCCCCcc------
Confidence 4578999999998754 588999999999999999999997 357999999999999997 56666 55
Q ss_pred hhhhhcccccccccccccCccceeeeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhcc
Q psy14113 391 IMEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFA 462 (543)
Q Consensus 391 I~~~~s~~~~~~~~C~~C~k~I~~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~ 462 (543)
.+|+++|.+..+.++++ ..|.+..|+ .+++++||..||.+++.
T Consensus 73 ---------------~~C~~~I~~~~~~~~g~-------------~~l~g~~f~-~~~~~~yC~~~~~~~~~ 115 (122)
T 1m3v_A 73 ---------------GSGGHMGSGGDVMVVGE-------------PTLMGGEFG-DEDERLITRLENTQFDA 115 (122)
T ss_dssp ---------------SCSSCCSCCEESSSSSS-------------SSCCSCTTC-CTTCCCCEECTTTTTTC
T ss_pred ---------------ccCCCCcCchheEEcCC-------------cCCCCCccE-ecCCEeEccCcchhchh
Confidence 56666666544445443 357788885 68999999999988754
No 17
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=2.2e-16 Score=139.12 Aligned_cols=106 Identities=20% Similarity=0.270 Sum_probs=85.8
Q ss_pred cccccccCccceee-eeeccCccccCcCccCCCCCCCCCC--CceeeeecCceeccchhhhhccccccccCCCCCCCCCC
Q psy14113 402 AEKCAICGHLIMEM-ILQAMGKSYHPGCFRCCLCNECLDG--VPFTVDVDNKIYCVNDYHRMFAPKCAACGKGITPVEGT 478 (543)
Q Consensus 402 ~~~C~~C~k~I~~~-~v~a~gk~wH~~CF~Cs~C~~~L~g--~~f~v~~dGkpYC~~CY~k~f~pkC~~C~k~I~~~eg~ 478 (543)
.++|.+|+++|.+. ++.++++.||++||+|..|+++|.. ..| +.++|++||+.||.++|+++|..|...
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~-~~~~g~~yC~~~y~~~f~~~c~~c~~~------- 74 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRL-YYKLGRKLCRRDYLRLGGSGGHMGSGG------- 74 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCC-CCBTTBCCCHHHHHHHHTSCCSSCBSC-------
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCee-EEECCeeechHHHHHHhCcccCcCCCC-------
Confidence 46899999999875 8999999999999999999999974 466 468999999999999999999988621
Q ss_pred cceEEEEeCCCcccCCCCccCCCCCcCCCCCCcceeecCCcccCchhhhhhhhccCC
Q psy14113 479 EETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLMCRACHLSHLSRHHQ 535 (543)
Q Consensus 479 ~e~~~v~a~dk~yH~~CF~C~~C~k~L~~~~~~~~~~~dg~~yC~~C~~~~~~~~~~ 535 (543)
+. ++ |++.+..+ +.|+..++++||+.|+.++...+..
T Consensus 75 -~~--~~---------------~~~~~~~g--~~f~~~~~~~~C~~~~~~~~~~~g~ 111 (114)
T 1j2o_A 75 -DV--MV---------------VGEPTLMG--GEFGDEDERLITRLENTQFDAANGI 111 (114)
T ss_dssp -SC--CC---------------SSCSSTTS--SBCCCSSSCCCEEEECTTCCCTTSS
T ss_pred -ce--eE---------------cCCccCCC--CeeEEcCCEeecchhhhccccccCC
Confidence 11 11 44555444 4788899999999999887766543
No 18
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=4.4e-16 Score=128.69 Aligned_cols=79 Identities=48% Similarity=0.976 Sum_probs=68.1
Q ss_pred CCeeeeccccccccccccchhhhccccchhhhhcccccccccccccCccceeeeeeccCccccCcCccCCCCCCCCCCCc
Q psy14113 363 HGRVYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVP 442 (543)
Q Consensus 363 dG~~yC~~cY~~~~~~~fa~kCa~C~~~I~~~~s~~~~~~~~C~~C~k~I~~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~ 442 (543)
+|++||++||. +++ .+|.+|++.|.++++.++++.||++||+|..|+++|.+..
T Consensus 2 ~g~~yC~~~y~-----~~~---------------------~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~ 55 (81)
T 2dlo_A 2 SSGSSGEGCYV-----ATL---------------------EKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIP 55 (81)
T ss_dssp CCCCCCCCCCC-----SSC---------------------CBCTTTCCBCCSCCEEETTEEECTTTCBCSSSCCBCTTSC
T ss_pred cCCEECHHHhh-----cCC---------------------CccccCCCeecceeEEECCccccHHhcCcccCCCccCCCe
Confidence 68999999995 233 4567888888888899999999999999999999999888
Q ss_pred eeeeecCceeccchhhhhccccccc
Q psy14113 443 FTVDVDNKIYCVNDYHRMFAPKCAA 467 (543)
Q Consensus 443 f~v~~dGkpYC~~CY~k~f~pkC~~ 467 (543)
|....+|++||+.||.++|+++|++
T Consensus 56 f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 56 FTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp EECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred eEECCCCEEECHHHHHHHhcCcCCC
Confidence 8644478999999999999999974
No 19
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=7.6e-16 Score=127.40 Aligned_cols=79 Identities=30% Similarity=0.575 Sum_probs=68.0
Q ss_pred CCeeeeccccccccccccchhhhccccchhhhhcccccccccccccCccce--eeeeeccCccccCcCccCCCCCCCCCC
Q psy14113 363 HGRVYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIM--EMILQAMGKSYHPGCFRCCLCNECLDG 440 (543)
Q Consensus 363 dG~~yC~~cY~~~~~~~fa~kCa~C~~~I~~~~s~~~~~~~~C~~C~k~I~--~~~v~a~gk~wH~~CF~Cs~C~~~L~g 440 (543)
+|++||+.||. ++|+++| .+|++.|. +.++.++++.||++||+|..|+++|.+
T Consensus 1 ~g~~yC~~~y~----~~~~~~C---------------------~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~ 55 (82)
T 2ehe_A 1 GSSGSSGPCYD----NTFANTC---------------------AECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLAD 55 (82)
T ss_dssp CCCCCCCCCCC----CCCSCBC---------------------TTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSS
T ss_pred CCceechhHhC----cccCCcC---------------------ccCCCccccCcEEEEeCCccccccCCeecCCCCccCC
Confidence 58899999997 4555555 66667776 578889999999999999999999998
Q ss_pred CceeeeecCceeccchhhhhccccccc
Q psy14113 441 VPFTVDVDNKIYCVNDYHRMFAPKCAA 467 (543)
Q Consensus 441 ~~f~v~~dGkpYC~~CY~k~f~pkC~~ 467 (543)
..|+ .+++++||+.||.++|+++|+.
T Consensus 56 ~~f~-~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 56 EPFT-CQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp CCEE-EETTEEEETTTSSCCGGGSSCC
T ss_pred CccE-eeCCEEECHHHHhhhcCCCCCC
Confidence 8884 5899999999999999999974
No 20
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=9e-16 Score=126.27 Aligned_cols=79 Identities=24% Similarity=0.452 Sum_probs=68.0
Q ss_pred CCeeeeccccccccccccchhhhccccchhhhhcccccccccccccCccceeeeeeccCccccCcCccCCCCCCCCCCCc
Q psy14113 363 HGRVYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVP 442 (543)
Q Consensus 363 dG~~yC~~cY~~~~~~~fa~kCa~C~~~I~~~~s~~~~~~~~C~~C~k~I~~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~ 442 (543)
+|++||++||. ++++++| .+|++.|.++.+.++++.||++||+|..|+++|.+..
T Consensus 1 gg~~yC~~cy~----~~~~~~C---------------------~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~ 55 (80)
T 2cuq_A 1 GSSGSSGPCYE----NKFAPRC---------------------ARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQ 55 (80)
T ss_dssp CCCCSCCCCCC----CCSSCCC---------------------TTTCCCCCSCCEESSSSEECTTTCBCSSSCCBCTTCC
T ss_pred CCcEEcHHHHc----cccCCcC---------------------CCCCCEecCcEEEECCchhhhhhCCcccCCCcCCCCe
Confidence 57899999997 4555555 6777777777889999999999999999999998877
Q ss_pred eeeeecCceeccchhhhhccccccc
Q psy14113 443 FTVDVDNKIYCVNDYHRMFAPKCAA 467 (543)
Q Consensus 443 f~v~~dGkpYC~~CY~k~f~pkC~~ 467 (543)
|+ .+++++||+.||.++|+++|+.
T Consensus 56 ~~-~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 56 FT-SRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp EE-ECSSSEEEHHHHHHHTTCSTTC
T ss_pred eE-eECCEEECHHHHHHHcCCCCCC
Confidence 75 5899999999999999999964
No 21
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=8.3e-16 Score=126.46 Aligned_cols=79 Identities=25% Similarity=0.522 Sum_probs=68.1
Q ss_pred CCeeeeccccccccccccchhhhccccchhhhhcccccccccccccCccceeeeeeccCccccCcCccCCCCCCCCCCCc
Q psy14113 363 HGRVYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVP 442 (543)
Q Consensus 363 dG~~yC~~cY~~~~~~~fa~kCa~C~~~I~~~~s~~~~~~~~C~~C~k~I~~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~ 442 (543)
+|++||++||. ++|+++ |.+|++.|.++.+.++++.||++||+|..|+++|.+..
T Consensus 1 gg~~yC~~~y~----~~~~~~---------------------C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~ 55 (80)
T 1x3h_A 1 GSSGSSGKDFL----AMFSPK---------------------CGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGS 55 (80)
T ss_dssp CCCCCCCCCCC----CCCSCB---------------------CTTTCCBCCSSCEEETTEEECTTTCBCSSSCCBSCSSC
T ss_pred CCCccchhHHh----hhcCCc---------------------cccCCCeecceeEEECCCeEecCcCChhhCCCCCCCCc
Confidence 47899999997 455554 47777777777889999999999999999999999877
Q ss_pred eeeeecCceeccchhhhhccccccc
Q psy14113 443 FTVDVDNKIYCVNDYHRMFAPKCAA 467 (543)
Q Consensus 443 f~v~~dGkpYC~~CY~k~f~pkC~~ 467 (543)
|+ .+++++||+.||.++|+++|++
T Consensus 56 ~~-~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 56 FF-ELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CE-ESSSCEECHHHHHHHHSSSCCC
T ss_pred EE-eECCEEECHHHHHHHcCCCCCC
Confidence 75 5899999999999999999974
No 22
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2e-15 Score=124.92 Aligned_cols=78 Identities=27% Similarity=0.462 Sum_probs=68.7
Q ss_pred cCceeccchhhhhccccccccCCCCCCCCCCcceEEEEeCCCcccCCCCccCCCCCcCCCCCCcceeecCCcccCchhhh
Q psy14113 448 DNKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLMCRACHL 527 (543)
Q Consensus 448 dGkpYC~~CY~k~f~pkC~~C~k~I~~~eg~~e~~~v~a~dk~yH~~CF~C~~C~k~L~~~~~~~~~~~dg~~yC~~C~~ 527 (543)
+|++||+.||.++|+++|.+|+++|.+.+ ..+.++++.||++||+|..|++.|.++ .|+..++++||+.|+.
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~-----~~~~a~~~~~H~~CF~C~~C~~~L~~~---~f~~~~~~~~C~~c~~ 72 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDS-----RELFYEDRHFHEGCFRCCRCQRSLADE---PFTCQDSELLCNDCYC 72 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSC-----CBCCCSSCCCBTTTSBCTTTCCBCSSC---CEEEETTEEEETTTSS
T ss_pred CCceechhHhCcccCCcCccCCCccccCc-----EEEEeCCccccccCCeecCCCCccCCC---ccEeeCCEEECHHHHh
Confidence 58999999999999999999999998533 136678999999999999999999875 6889999999999998
Q ss_pred hhhhcc
Q psy14113 528 SHLSRH 533 (543)
Q Consensus 528 ~~~~~~ 533 (543)
+++...
T Consensus 73 ~~~~~~ 78 (82)
T 2ehe_A 73 SAFSSG 78 (82)
T ss_dssp CCGGGS
T ss_pred hhcCCC
Confidence 877653
No 23
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=3.5e-15 Score=131.48 Aligned_cols=103 Identities=22% Similarity=0.438 Sum_probs=80.6
Q ss_pred ccccccCCceeecCcceeeccCceeccCCcccCccCCCCCC--CceeeeCCeeeeccccccccccccchhhhccccchhh
Q psy14113 316 FGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRG--KAFYNVHGRVYCEEDYLYSGFQQTAEKCAICGHLIME 393 (543)
Q Consensus 316 ~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~--~~f~~~dG~~yC~~cY~~~~~~~fa~kCa~C~~~I~~ 393 (543)
.++|.+|+++|.+. .++.++++.||++||+|..|+++|.. ..|+.++|++||+.||. ++|+++|..|.
T Consensus 3 ~~~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~----~~f~~~c~~c~----- 72 (114)
T 1j2o_A 3 LLTCGGCQQNIGDR-YFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL----RLGGSGGHMGS----- 72 (114)
T ss_dssp CBCBSSSCSCBCSS-EEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHH----HHHTSCCSSCB-----
T ss_pred CCCCcCCCCeeCCc-EEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHH----HHhCcccCcCC-----
Confidence 46899999999864 37999999999999999999999975 58999999999999998 67888874432
Q ss_pred hhcccccccccccccCccceeeeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhcc
Q psy14113 394 MYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFA 462 (543)
Q Consensus 394 ~~s~~~~~~~~C~~C~k~I~~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~ 462 (543)
|+ .++. |. ...|.+..|+ ..++++||..||.++..
T Consensus 73 --------------~~-----~~~~------------~~--~~~~~g~~f~-~~~~~~~C~~~~~~~~~ 107 (114)
T 1j2o_A 73 --------------GG-----DVMV------------VG--EPTLMGGEFG-DEDERLITRLENTQFDA 107 (114)
T ss_dssp --------------SC-----SCCC------------SS--CSSTTSSBCC-CSSSCCCEEEECTTCCC
T ss_pred --------------CC-----ceeE------------cC--CccCCCCeeE-EcCCEeecchhhhcccc
Confidence 11 1111 11 2335677884 68999999999988654
No 24
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=4.6e-15 Score=122.54 Aligned_cols=80 Identities=21% Similarity=0.435 Sum_probs=71.0
Q ss_pred cCceeccchhhhhccccccccCCCCCCCCCCcceEEEEeCCCcccCCCCccCCCCCcCCCCCCcceeecCCcccCchhhh
Q psy14113 448 DNKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLMCRACHL 527 (543)
Q Consensus 448 dGkpYC~~CY~k~f~pkC~~C~k~I~~~eg~~e~~~v~a~dk~yH~~CF~C~~C~k~L~~~~~~~~~~~dg~~yC~~C~~ 527 (543)
++.+||+.||.++++++|.+|+++|.+.+ ..|.++++.||++||+|..|++.|..+ .|+..++++||+.|+.
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~-----~~~~a~~~~~H~~CF~C~~C~~~L~~~---~~~~~~~~~yC~~cy~ 72 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGD-----QNVEYKGTVWHKDCFTCSNCKQVIGTG---SFFPKGEDFYCVTCHE 72 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSS-----CEEECSSCEEETTTCCCSSSCCCCTTS---CEEEETTEEEEHHHHH
T ss_pred CCCcCchhHHccccCCcCccCCcccccCc-----eEEEECccccccccCchhhCCCccCCC---ccEeeCCEEECHHHHH
Confidence 46899999999999999999999998653 247889999999999999999999986 6899999999999999
Q ss_pred hhhhccCC
Q psy14113 528 SHLSRHHQ 535 (543)
Q Consensus 528 ~~~~~~~~ 535 (543)
+++..+-.
T Consensus 73 ~~f~~~~~ 80 (82)
T 1x63_A 73 TKFASGPS 80 (82)
T ss_dssp HHTSCCCS
T ss_pred HHhCCCCC
Confidence 98876543
No 25
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.4e-15 Score=121.89 Aligned_cols=76 Identities=24% Similarity=0.475 Sum_probs=65.5
Q ss_pred cCceeccchhhhhccccccccCCCCCCCCCCcceEEEEeCCCcccCCCCccCCCCCcCCCCCCcceeecCCcccCchhhh
Q psy14113 448 DNKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLMCRACHL 527 (543)
Q Consensus 448 dGkpYC~~CY~k~f~pkC~~C~k~I~~~eg~~e~~~v~a~dk~yH~~CF~C~~C~k~L~~~~~~~~~~~dg~~yC~~C~~ 527 (543)
++++||+.||.++|+++|++|+++|.+.... ...+.++++.||++||+|..|++.|.++ .|+..++++||+.|+.
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~--~~~~~a~~~~~H~~CF~C~~C~~~L~~~---~f~~~~~~~yC~~cy~ 75 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKG--SSVVAYEGQSWHDYCFHCKKCSVNLANK---RFVFHQEQVYCPDCAK 75 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSC--CCEEEETTEEEETTTCBCSSSCCBCTTS---CCCEETTEECCHHHHH
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCC--ceeEEECcceeCcccCEehhcCCCCCCC---ccEeECCEEEChHHhc
Confidence 4789999999999999999999999851100 1257899999999999999999999874 6889999999999996
Q ss_pred h
Q psy14113 528 S 528 (543)
Q Consensus 528 ~ 528 (543)
+
T Consensus 76 ~ 76 (77)
T 2egq_A 76 K 76 (77)
T ss_dssp H
T ss_pred c
Confidence 5
No 26
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=5.2e-15 Score=121.68 Aligned_cols=76 Identities=25% Similarity=0.487 Sum_probs=68.4
Q ss_pred cCceeccchhhhhccccccccCCCCCCCCCCcceEEEEeCCCcccCCCCccCCCCCcCCCCCCcceeecCCcccCchhhh
Q psy14113 448 DNKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLMCRACHL 527 (543)
Q Consensus 448 dGkpYC~~CY~k~f~pkC~~C~k~I~~~eg~~e~~~v~a~dk~yH~~CF~C~~C~k~L~~~~~~~~~~~dg~~yC~~C~~ 527 (543)
+|++||+.||.++++++|.+|+++|.+. .|.++++.||++||+|..|++.|..+ .|+..++++||+.|+.
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~-------~v~a~~~~~H~~CF~C~~C~~~L~~~---~~~~~~~~~yC~~cy~ 70 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQG-------GVTYRDQPWHRECLVCTGCQTPLAGQ---QFTSRDEDPYCVACFG 70 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSC-------CEESSSSEECTTTCBCSSSCCBCTTC---CEEECSSSEEEHHHHH
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCc-------EEEECCchhhhhhCCcccCCCcCCCC---eeEeECCEEECHHHHH
Confidence 5889999999999999999999999752 37799999999999999999999764 6899999999999999
Q ss_pred hhhhcc
Q psy14113 528 SHLSRH 533 (543)
Q Consensus 528 ~~~~~~ 533 (543)
+++...
T Consensus 71 ~~f~~~ 76 (80)
T 2cuq_A 71 ELFASG 76 (80)
T ss_dssp HHTTCS
T ss_pred HHcCCC
Confidence 887764
No 27
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=5.8e-15 Score=121.95 Aligned_cols=79 Identities=20% Similarity=0.405 Sum_probs=67.1
Q ss_pred CCeeeeccccccccccccchhhhccccchhhhhcccccccccccccCccce--eeeeeccCccccCcCccCCCCCCCCCC
Q psy14113 363 HGRVYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIM--EMILQAMGKSYHPGCFRCCLCNECLDG 440 (543)
Q Consensus 363 dG~~yC~~cY~~~~~~~fa~kCa~C~~~I~~~~s~~~~~~~~C~~C~k~I~--~~~v~a~gk~wH~~CF~Cs~C~~~L~g 440 (543)
++.+||++||. .+++++ |.+|++.|. +.++.++++.||++||+|..|+++|.+
T Consensus 1 ~~~~yC~~cy~----~~~~~~---------------------C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~ 55 (82)
T 1x63_A 1 GSSGSSGKCTT----REDSPK---------------------CKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGT 55 (82)
T ss_dssp CCSCCCCCCCS----CCCSCB---------------------CSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTT
T ss_pred CCCcCchhHHc----cccCCc---------------------CccCCcccccCceEEEECccccccccCchhhCCCccCC
Confidence 46799999997 445554 577777777 578999999999999999999999998
Q ss_pred CceeeeecCceeccchhhhhccccccc
Q psy14113 441 VPFTVDVDNKIYCVNDYHRMFAPKCAA 467 (543)
Q Consensus 441 ~~f~v~~dGkpYC~~CY~k~f~pkC~~ 467 (543)
..|+ .+++++||+.||.++|+++|..
T Consensus 56 ~~~~-~~~~~~yC~~cy~~~f~~~~~~ 81 (82)
T 1x63_A 56 GSFF-PKGEDFYCVTCHETKFASGPSS 81 (82)
T ss_dssp SCEE-EETTEEEEHHHHHHHTSCCCSC
T ss_pred CccE-eeCCEEECHHHHHHHhCCCCCC
Confidence 8875 5899999999999999998853
No 28
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=5.9e-15 Score=121.75 Aligned_cols=79 Identities=22% Similarity=0.464 Sum_probs=66.6
Q ss_pred CeeeeccccccccccccchhhhccccchhhhhcccccccccccccCccceeeeeeccCccccCcCccCCCCCCCCC-CCc
Q psy14113 364 GRVYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLD-GVP 442 (543)
Q Consensus 364 G~~yC~~cY~~~~~~~fa~kCa~C~~~I~~~~s~~~~~~~~C~~C~k~I~~~~v~a~gk~wH~~CF~Cs~C~~~L~-g~~ 442 (543)
+.+||+.||. ++|+++| .+|++.|.++++.++++.||++||+|..|++.|. +..
T Consensus 2 ~~~yC~~~y~----~~~~~~C---------------------~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~ 56 (81)
T 1x6a_A 2 SSGSSGKDYW----GKFGEFC---------------------HGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDA 56 (81)
T ss_dssp CCCCCCCCSS----CCSSCBC---------------------TTTCCBCCSCCBCCTTCCBCTTSCBCTTTCCBCCTTSC
T ss_pred CCccchhHHh----hhcCCcC---------------------ccCCCCcCceEEEECCceeccccCCccCCCCccCCCCc
Confidence 6799999997 4555555 7777777788899999999999999999999996 566
Q ss_pred eeeeecCceeccchhhhhccccccc
Q psy14113 443 FTVDVDNKIYCVNDYHRMFAPKCAA 467 (543)
Q Consensus 443 f~v~~dGkpYC~~CY~k~f~pkC~~ 467 (543)
|.+..++++||+.||.++|++.|.+
T Consensus 57 f~~~~~~~~~C~~c~~~~~~~~~sg 81 (81)
T 1x6a_A 57 YALVQHATLYCGKCHNEVVSGPSSG 81 (81)
T ss_dssp EEECSSSCEEEHHHHHHHHCTTSCC
T ss_pred EEEeeCCEEECHHHHHHHhcCCCCC
Confidence 6545799999999999999988753
No 29
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=7.3e-15 Score=120.78 Aligned_cols=75 Identities=24% Similarity=0.572 Sum_probs=68.0
Q ss_pred cCceeccchhhhhccccccccCCCCCCCCCCcceEEEEeCCCcccCCCCccCCCCCcCCCCCCcceeecCCcccCchhhh
Q psy14113 448 DNKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLMCRACHL 527 (543)
Q Consensus 448 dGkpYC~~CY~k~f~pkC~~C~k~I~~~eg~~e~~~v~a~dk~yH~~CF~C~~C~k~L~~~~~~~~~~~dg~~yC~~C~~ 527 (543)
+|++||+.||.++|+++|.+|+++|.+. .|.++++.||++||+|..|++.|..+ .|+..++++||+.|+.
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~-------~v~a~~~~~H~~CF~C~~C~~~L~~~---~~~~~~~~~yC~~~y~ 70 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLEN-------YLSAMDTVWHPECFVCGDCFTSFSTG---SFFELDGRPFCELHYH 70 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSS-------CEEETTEEECTTTCBCSSSCCBSCSS---CCEESSSCEECHHHHH
T ss_pred CCCccchhHHhhhcCCccccCCCeecce-------eEEECCCeEecCcCChhhCCCCCCCC---cEEeECCEEECHHHHH
Confidence 4789999999999999999999999852 37899999999999999999999885 5889999999999999
Q ss_pred hhhhc
Q psy14113 528 SHLSR 532 (543)
Q Consensus 528 ~~~~~ 532 (543)
+++..
T Consensus 71 ~~f~~ 75 (80)
T 1x3h_A 71 HRRGS 75 (80)
T ss_dssp HHHSS
T ss_pred HHcCC
Confidence 88765
No 30
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=1.3e-14 Score=119.60 Aligned_cols=77 Identities=22% Similarity=0.446 Sum_probs=66.7
Q ss_pred cCceeccchhhhhccccccccCCCCCCCCCCcceEEEEeCCCcccCCCCccCCCCCcCCCCCCccee-ecCCcccCchhh
Q psy14113 448 DNKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCY-PLQGRLMCRACH 526 (543)
Q Consensus 448 dGkpYC~~CY~k~f~pkC~~C~k~I~~~eg~~e~~~v~a~dk~yH~~CF~C~~C~k~L~~~~~~~~~-~~dg~~yC~~C~ 526 (543)
++.+||+.||.++|+++|.+|+++|.. + .+.++++.||++||+|..|++.|..+ ..|+ ..++++||+.|+
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~-~------~~~a~~~~~H~~CF~C~~C~~~L~~g--~~f~~~~~~~~~C~~c~ 71 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTG-P------FMVAGEFKYHPECFACMSCKVIIEDG--DAYALVQHATLYCGKCH 71 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCS-C------CBCCTTCCBCTTSCBCTTTCCBCCTT--SCEEECSSSCEEEHHHH
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCc-e------EEEECCceeccccCCccCCCCccCCC--CcEEEeeCCEEECHHHH
Confidence 367999999999999999999999982 1 36789999999999999999999865 2466 479999999999
Q ss_pred hhhhhcc
Q psy14113 527 LSHLSRH 533 (543)
Q Consensus 527 ~~~~~~~ 533 (543)
.+++...
T Consensus 72 ~~~~~~~ 78 (81)
T 1x6a_A 72 NEVVSGP 78 (81)
T ss_dssp HHHHCTT
T ss_pred HHHhcCC
Confidence 9888754
No 31
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=6.4e-14 Score=114.28 Aligned_cols=70 Identities=27% Similarity=0.595 Sum_probs=63.3
Q ss_pred ccccccCccce-eeeeeccCccccCcCccCCCCCCCCCCCceeeeecCceecc-chhhhhccccccccCCCCC
Q psy14113 403 EKCAICGHLIM-EMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCV-NDYHRMFAPKCAACGKGIT 473 (543)
Q Consensus 403 ~~C~~C~k~I~-~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~-~CY~k~f~pkC~~C~k~I~ 473 (543)
++|.+|++.|. ++.+.++++.||++||+|..|+++|.+..|+ .++|++||+ .||.++|+++|.+|++.+.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHA-EHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEE-EETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceE-CcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 46889999998 6788999999999999999999999987775 689999999 6999999999999998775
No 32
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=9.7e-14 Score=113.31 Aligned_cols=69 Identities=19% Similarity=0.455 Sum_probs=62.2
Q ss_pred cccccccCCceeec--CcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccccccccccchhhhcc
Q psy14113 315 YFGICHTCGEKVTG--AGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCAIC 387 (543)
Q Consensus 315 ~~~~C~~C~k~I~g--~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~~~~~~~fa~kCa~C 387 (543)
+.++|.+|+++|.+ .++++.++++.||.+||+|..|+++|.+..|+.+++++||+.||. ++|+++|+.+
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~----~~f~~~C~~~ 74 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGS----GMDTDISGPS 74 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTC----CCCCCSSSSS
T ss_pred cCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhh----hhhCCcCCCC
Confidence 56789999999986 556899999999999999999999999889999999999999998 6788888654
No 33
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=9.8e-14 Score=114.53 Aligned_cols=74 Identities=19% Similarity=0.308 Sum_probs=64.8
Q ss_pred cCceeccchhhhhccccccccCCCCCCCCCCcceEEEEeCCCcccCCCCccCCCCCcCCCCCCcceeec-CCcccCchhh
Q psy14113 448 DNKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPL-QGRLMCRACH 526 (543)
Q Consensus 448 dGkpYC~~CY~k~f~pkC~~C~k~I~~~eg~~e~~~v~a~dk~yH~~CF~C~~C~k~L~~~~~~~~~~~-dg~~yC~~C~ 526 (543)
+|++||+.||. +++++|.+|+++|... .|.++++.||++||+|..|++.|... .|+.. ++++||+.|+
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~~-------~~~a~~~~~H~~CF~C~~C~~~L~~~---~f~~~~~g~~yC~~cy 70 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILDR-------ILRAMGKAYHPGCFTCVVCHRGLDGI---PFTVDATSQIHCIEDF 70 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCSC-------CEEETTEEECTTTCBCSSSCCBCTTS---CEECCTTCCCEEHHHH
T ss_pred cCCEECHHHhh-cCCCccccCCCeecce-------eEEECCccccHHhcCcccCCCccCCC---eeEECCCCEEECHHHH
Confidence 68999999999 7999999999999731 47899999999999999999999864 56655 7899999999
Q ss_pred hhhhhc
Q psy14113 527 LSHLSR 532 (543)
Q Consensus 527 ~~~~~~ 532 (543)
.+++..
T Consensus 71 ~~~f~~ 76 (81)
T 2dlo_A 71 HRKFAS 76 (81)
T ss_dssp HHHTTS
T ss_pred HHHhcC
Confidence 988765
No 34
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=6.5e-14 Score=114.26 Aligned_cols=72 Identities=25% Similarity=0.474 Sum_probs=60.0
Q ss_pred CCeeeeccccccccccccchhhhccccchhhhhcccccccccccccCcccee-----eeeeccCccccCcCccCCCCCCC
Q psy14113 363 HGRVYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIME-----MILQAMGKSYHPGCFRCCLCNEC 437 (543)
Q Consensus 363 dG~~yC~~cY~~~~~~~fa~kCa~C~~~I~~~~s~~~~~~~~C~~C~k~I~~-----~~v~a~gk~wH~~CF~Cs~C~~~ 437 (543)
++++||++||. ++|+++| .+|++.|.+ .++.++++.||++||+|..|+++
T Consensus 1 g~~~yC~~cy~----~~~~~~C---------------------~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~ 55 (77)
T 2egq_A 1 GSSGSSGDCYK----NFVAKKC---------------------AGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVN 55 (77)
T ss_dssp CCSSCCTTCCC----SCCCCCC---------------------SSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCB
T ss_pred CCCeEchhHhc----hhhCccC---------------------cccCCcccCCCCCceeEEECcceeCcccCEehhcCCC
Confidence 46899999997 4566655 666666664 78899999999999999999999
Q ss_pred CCCCceeeeecCceeccchhhhh
Q psy14113 438 LDGVPFTVDVDNKIYCVNDYHRM 460 (543)
Q Consensus 438 L~g~~f~v~~dGkpYC~~CY~k~ 460 (543)
|.+..|+ .++|++||+.||.++
T Consensus 56 L~~~~f~-~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 56 LANKRFV-FHQEQVYCPDCAKKL 77 (77)
T ss_dssp CTTSCCC-EETTEECCHHHHHHC
T ss_pred CCCCccE-eECCEEEChHHhccC
Confidence 9988885 689999999999763
No 35
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.41 E-value=6.9e-14 Score=115.46 Aligned_cols=72 Identities=31% Similarity=0.707 Sum_probs=54.2
Q ss_pred cccccccccCccce-eeeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhccccccccCCCC
Q psy14113 400 QTAEKCAICGHLIM-EMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAACGKGI 472 (543)
Q Consensus 400 ~~~~~C~~C~k~I~-~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~~C~k~I 472 (543)
.+.++|.+|++.|. ++.+.++++.||++||+|..|+++|.+..|+ .+++++||+.||.++|+++|.+|++..
T Consensus 5 ~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVA-IHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp ---CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCE-EETTEEECSHHHHHHCC----------
T ss_pred CCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeE-eeCCEEECHHHHHHHhCCcccccCCcc
Confidence 45678899999996 5788999999999999999999999988775 579999999999999999999998765
No 36
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=1.2e-13 Score=112.82 Aligned_cols=67 Identities=21% Similarity=0.448 Sum_probs=59.9
Q ss_pred cccccccCcccee----eeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhccccccccC
Q psy14113 402 AEKCAICGHLIME----MILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAACG 469 (543)
Q Consensus 402 ~~~C~~C~k~I~~----~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~~C~ 469 (543)
.++|.+|+++|.+ +++.++++.||++||+|..|+++|.+..|+ .+++++||+.||.++|+++|+.+.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFL-TQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEE-EETTEEEETTTTCCCCCCSSSSSC
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceE-eECCEEECHHHhhhhhCCcCCCCC
Confidence 4567888888886 789999999999999999999999988885 589999999999999999999875
No 37
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=1.2e-13 Score=113.94 Aligned_cols=75 Identities=25% Similarity=0.591 Sum_probs=63.9
Q ss_pred CceeccchhhhhccccccccCCCCCCCCCCcceEEEEeCCCcccCCCCccCCCCCcCCCCCCcceeecCCc-ccCchhhh
Q psy14113 449 NKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGR-LMCRACHL 527 (543)
Q Consensus 449 GkpYC~~CY~k~f~pkC~~C~k~I~~~eg~~e~~~v~a~dk~yH~~CF~C~~C~k~L~~~~~~~~~~~dg~-~yC~~C~~ 527 (543)
+.+||+.||.++|+++|.+|+++|.+. .|.++++.||++||+|..|++.|..+ .+|..++. +||+.|+.
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~~-------~v~a~~~~wH~~CF~C~~C~~~L~~~---~~~~~~~~~~~C~~C~~ 71 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEGE-------VVSALGKTYHPDCFVCAVCRLPFPPG---DRVTFNGKECMCQKCSL 71 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCSC-------CEEETTEEECTTTSSCSSSCCCCCSS---SCEEEETTEEEEHHHHS
T ss_pred CCCcchHHHHhHhCCcCccccCEeccc-------eEEECCceeCccCCccccCCCCCCCC---CEEEeCCCCEEChhhhc
Confidence 468999999999999999999999831 37899999999999999999999876 35666665 79999998
Q ss_pred hhhhcc
Q psy14113 528 SHLSRH 533 (543)
Q Consensus 528 ~~~~~~ 533 (543)
+++...
T Consensus 72 ~~~~~~ 77 (81)
T 1v6g_A 72 PVSVSG 77 (81)
T ss_dssp CCSSCC
T ss_pred ccCCCC
Confidence 776654
No 38
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=1.6e-13 Score=109.82 Aligned_cols=66 Identities=26% Similarity=0.627 Sum_probs=59.5
Q ss_pred ccccccccCccceeeeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhccccccc
Q psy14113 401 TAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAA 467 (543)
Q Consensus 401 ~~~~C~~C~k~I~~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~~ 467 (543)
+.++|.+|++.|.++.+.++++.||++||+|..|+++|.+..|+ .+++++||+.||.++|+++|++
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 4 GSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFT-AVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCCSSSCCCCCTTCEEETTEEECTTTTBCTTTCCBCTTSCEE-ECSSCEEEHHHHHHHHTCSCCC
T ss_pred CcCCCcccCCEeCcceEEECccccccCcCEECCCCCCCCCCccE-eECCEEECHHHhHHHhcCCCCC
Confidence 34678999999988888999999999999999999999988875 5899999999999999999974
No 39
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=2.3e-13 Score=109.05 Aligned_cols=65 Identities=26% Similarity=0.570 Sum_probs=59.0
Q ss_pred cccccccCccceeeeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhccccccc
Q psy14113 402 AEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAA 467 (543)
Q Consensus 402 ~~~C~~C~k~I~~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~~ 467 (543)
.++|.+|++.|.++.+.++++.||++||+|..|+++|.+..|+ .+++++||+.||.++|+++|++
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFT-ARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCBCSSSCCBCCSSEEESSSSEEETTTSBCSSSCCBCTTSCCE-ESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCcccCCeeccceEEECccccCCCCCccCCCCCcCCcCceE-eeCCeEECHHHHHHHhccccCC
Confidence 4678899999988889999999999999999999999988885 5799999999999999999974
No 40
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=2.2e-13 Score=114.85 Aligned_cols=66 Identities=30% Similarity=0.664 Sum_probs=60.1
Q ss_pred ccccccccCccceeeeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhccccccc
Q psy14113 401 TAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAA 467 (543)
Q Consensus 401 ~~~~C~~C~k~I~~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~~ 467 (543)
..++|.+|++.|.++++.++++.||++||+|..|++.|.+..|+ .+++++||+.||.++|+++|+.
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFV-EEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTTCBCSSSCCBCSSSCBE-ESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCCccCCCEecceEEEECCccccccCCccCCCCCCCCCCEeE-eECCEEECHHHHHHHcCCCCCC
Confidence 45678999999988899999999999999999999999988874 6899999999999999999974
No 41
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=2e-13 Score=109.81 Aligned_cols=67 Identities=22% Similarity=0.503 Sum_probs=61.2
Q ss_pred cccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccccccccccchhhh
Q psy14113 315 YFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCA 385 (543)
Q Consensus 315 ~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~~~~~~~fa~kCa 385 (543)
+..+|.+|++.|...+.++.++++.||.+||+|..|+++|.+..|+.++|++||+.||. ++|+++|+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~----~~f~~~C~ 70 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYE----KQHASGPS 70 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHH----HHTSSCCC
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHh----HHhCCCCC
Confidence 56789999999987667899999999999999999999999889999999999999997 67888874
No 42
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.38 E-value=2.5e-13 Score=110.76 Aligned_cols=69 Identities=23% Similarity=0.520 Sum_probs=60.9
Q ss_pred cccccccccccCccce-eeeeeccCccccCcCccCCCCCCCCCCCceeeeecCceecc-chhhhhccccccc
Q psy14113 398 FQQTAEKCAICGHLIM-EMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCV-NDYHRMFAPKCAA 467 (543)
Q Consensus 398 ~~~~~~~C~~C~k~I~-~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~-~CY~k~f~pkC~~ 467 (543)
+....++|.+|++.|. ++.+.++++.||++||+|..|+++|.+..|+ .+++++||+ .||.++|+++|.+
T Consensus 5 ~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 5 SSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHA-EHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCE-EETTEEECTTTHHHHHSCSSCSC
T ss_pred cCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceE-eECCEEecchHHHHHhcccccCC
Confidence 4455678899999998 5778899999999999999999999988775 689999999 7999999999975
No 43
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.38 E-value=2.3e-13 Score=109.48 Aligned_cols=67 Identities=27% Similarity=0.576 Sum_probs=60.9
Q ss_pred cccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccccccccccchhhh
Q psy14113 315 YFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCA 385 (543)
Q Consensus 315 ~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~~~~~~~fa~kCa 385 (543)
+..+|.+|++.|...+.++.++++.||.+||+|..|+++|.+..|+.++|++||+.||. ++|+++|+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~----~~f~~~C~ 70 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYE----NKFASGPS 70 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHH----HHTSCCCC
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHH----HHccCcCC
Confidence 45789999999986557899999999999999999999999889999999999999997 67888884
No 44
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.37 E-value=2.6e-13 Score=110.64 Aligned_cols=69 Identities=25% Similarity=0.491 Sum_probs=60.6
Q ss_pred cccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeec-cccccccccccchhhhccccc
Q psy14113 317 GICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCE-EDYLYSGFQQTAEKCAICGHL 390 (543)
Q Consensus 317 ~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~-~cY~~~~~~~fa~kCa~C~~~ 390 (543)
++|.+|++.|... ..+.++++.||.+||+|..|+++|.+..|+.++|++||+ .||. ++|+++|++|+..
T Consensus 1 p~C~~C~~~I~~~-~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~----~~f~~~C~~C~~~ 70 (76)
T 1iml_A 1 PKCPKCDKEVYFA-ERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYS----AMFGPKGFGRGGA 70 (76)
T ss_dssp CBCTTTSSBCCGG-GEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHH----HHSSCCCSSCCCS
T ss_pred CcCCCCCCEEECc-eEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHH----HHhCccCCCcCCc
Confidence 4799999999844 368999999999999999999999988999999999999 6997 6788888777644
No 45
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.37 E-value=3.3e-13 Score=108.56 Aligned_cols=65 Identities=29% Similarity=0.633 Sum_probs=58.6
Q ss_pred cccccccCccce--eeeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhccccccc
Q psy14113 402 AEKCAICGHLIM--EMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAA 467 (543)
Q Consensus 402 ~~~C~~C~k~I~--~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~~ 467 (543)
..+|.+|++.|. +.++.++++.||++||+|..|+++|.+..|+ .++|++||+.||.++|+++|+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFV-PDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEE-EETTEEEEHHHHHHHTSCCCCC
T ss_pred CCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccC-CcCCeEECHHHHHHHccCcCCC
Confidence 457788888888 5789999999999999999999999988875 6899999999999999999974
No 46
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.37 E-value=2e-13 Score=111.18 Aligned_cols=69 Identities=29% Similarity=0.623 Sum_probs=60.6
Q ss_pred CccccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccccccccccchhhh
Q psy14113 313 GEYFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCA 385 (543)
Q Consensus 313 ~~~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~~~~~~~fa~kCa 385 (543)
.....+|.+|++.|...+.++.++|+.||.+||+|..|+++|.+..|+.++|++||+.||. ++|+++|+
T Consensus 8 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~----~~f~~~C~ 76 (77)
T 1g47_A 8 ALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQ----MLFAPCWI 76 (77)
T ss_dssp CCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHH----HHCCCC--
T ss_pred CCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHH----HHhhcccC
Confidence 3456789999999986677889999999999999999999999888999999999999997 67888873
No 47
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.36 E-value=2.4e-13 Score=112.23 Aligned_cols=72 Identities=26% Similarity=0.460 Sum_probs=55.4
Q ss_pred cccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccccccccccchhhhccccch
Q psy14113 315 YFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCAICGHLI 391 (543)
Q Consensus 315 ~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~~~~~~~fa~kCa~C~~~I 391 (543)
...+|.+|++.|...+ .+.++++.||.+||+|..|+++|.+..|+.+++++||+.||. ++|+++|.+|+...
T Consensus 6 ~~~~C~~C~~~I~~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~----~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAE-EVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYG----KKYGPKGYGYGQGA 77 (81)
T ss_dssp --CBCSSSCCBCSSTT-EEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHH----HHCC----------
T ss_pred CCCcCcCcCccccCce-eEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHH----HHhCCcccccCCcc
Confidence 3568999999997554 689999999999999999999999888999999999999997 68899998877543
No 48
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.35 E-value=4.9e-13 Score=107.49 Aligned_cols=65 Identities=28% Similarity=0.587 Sum_probs=58.0
Q ss_pred cccccccCccce--eeeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhccccccc
Q psy14113 402 AEKCAICGHLIM--EMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAA 467 (543)
Q Consensus 402 ~~~C~~C~k~I~--~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~~ 467 (543)
.++|.+|++.|. +.++.++++.||++||+|..|+++|.+..|+ .++|++||+.||.++|+++|+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFI-PKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEE-EETTEEEEHHHHHHHTSSCCCC
T ss_pred CCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccC-ccCCeEECHHHHhHHhCCCCCC
Confidence 456788888888 4689999999999999999999999988775 6899999999999999999974
No 49
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.35 E-value=4.3e-13 Score=108.12 Aligned_cols=67 Identities=18% Similarity=0.430 Sum_probs=59.0
Q ss_pred ccccccccCCceeec--CcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccccccccccchhh
Q psy14113 314 EYFGICHTCGEKVTG--AGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKC 384 (543)
Q Consensus 314 ~~~~~C~~C~k~I~g--~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~~~~~~~fa~kC 384 (543)
.+..+|.+|++.|.+ .+.++.++++.||.+||+|..|+++|.+..|+.++|++||+.||. ++|++++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~----~~~~p~~ 71 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGK----DISGPSS 71 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHH----TCCCSSC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcC----cccCCCC
Confidence 356789999999986 456899999999999999999999999889999999999999997 5666653
No 50
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.33 E-value=4.9e-13 Score=106.89 Aligned_cols=66 Identities=23% Similarity=0.579 Sum_probs=59.1
Q ss_pred ccccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccccccccccchhhh
Q psy14113 314 EYFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCA 385 (543)
Q Consensus 314 ~~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~~~~~~~fa~kCa 385 (543)
.+..+|.+|++.|.+ +.+.++++.||.+||+|..|+++|.+..|+.+++++||+.||. ++|+++|+
T Consensus 3 ~~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~----~~f~~~C~ 68 (69)
T 2cur_A 3 SGSSGCVKCNKAITS--GGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYK----NFVSGPSS 68 (69)
T ss_dssp CCCCCCSSSCCCCCT--TCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHH----HHHTCSCC
T ss_pred CCcCCCcccCCEeCc--ceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhH----HHhcCCCC
Confidence 356789999999985 3689999999999999999999999889999999999999997 67888874
No 51
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.33 E-value=6.5e-13 Score=105.25 Aligned_cols=62 Identities=26% Similarity=0.570 Sum_probs=56.1
Q ss_pred cccccccCccceeeeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhcccc
Q psy14113 402 AEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPK 464 (543)
Q Consensus 402 ~~~C~~C~k~I~~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pk 464 (543)
.++|.+|++.|.++++.++++.||++||+|..|+++|.+..|+ .++|++||+.||.++|+++
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHY-ERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTTCBCTTTCCBCSSSCCE-EETTEEECHHHHHHHCSCC
T ss_pred CCCCcccCCEecceEEEECccccccCcCEECCCCCCCCCCceE-eECCcEECHHHHHHHhCCC
Confidence 4678899999988889999999999999999999999988775 6899999999999999875
No 52
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.33 E-value=7.4e-13 Score=109.70 Aligned_cols=65 Identities=32% Similarity=0.685 Sum_probs=58.3
Q ss_pred ccccccccCccce-eeeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhccccccc
Q psy14113 401 TAEKCAICGHLIM-EMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAA 467 (543)
Q Consensus 401 ~~~~C~~C~k~I~-~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~~ 467 (543)
..++|.+|++.|. ++.+.++++.||++||+|..|++.|.+ .| +.++|++||+.||.++|+++|.+
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~-~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EY-ISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CC-EEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-Ce-EEECCEEECHHHHHHHcCCCCCC
Confidence 4678999999997 578899999999999999999999986 46 46899999999999999999974
No 53
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.32 E-value=8.8e-13 Score=106.28 Aligned_cols=64 Identities=23% Similarity=0.470 Sum_probs=57.0
Q ss_pred ccccccccCcccee----eeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhccccc
Q psy14113 401 TAEKCAICGHLIME----MILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKC 465 (543)
Q Consensus 401 ~~~~C~~C~k~I~~----~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC 465 (543)
+..+|.+|++.|.+ .++.++++.||++||+|..|+++|.+..|+ .++|++||+.||.++|++++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFL-TERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCE-ECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccE-eECCEEEChhHcCcccCCCC
Confidence 34678888888885 789999999999999999999999988885 58999999999999999876
No 54
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.32 E-value=6.9e-13 Score=106.18 Aligned_cols=66 Identities=21% Similarity=0.463 Sum_probs=59.1
Q ss_pred ccccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccccccccccchhhh
Q psy14113 314 EYFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCA 385 (543)
Q Consensus 314 ~~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~~~~~~~fa~kCa 385 (543)
.+..+|.+|++.|.+ ..+.++++.||++||+|..|+++|.+..|+.+++++||+.||. ++|+++|+
T Consensus 3 ~~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~----~~f~~~c~ 68 (70)
T 2d8z_A 3 SGSSGCVQCKKPITT--GGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFC----DLYASGPS 68 (70)
T ss_dssp CCCCBCSSSCCBCCS--SEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHH----HHTCCCCT
T ss_pred CCCCCCcccCCeecc--ceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHH----HHhccccC
Confidence 356789999999985 3589999999999999999999999889999999999999997 67888874
No 55
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.32 E-value=9.6e-13 Score=110.67 Aligned_cols=65 Identities=26% Similarity=0.510 Sum_probs=59.4
Q ss_pred ccccccccCccceeeeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhcccccc
Q psy14113 401 TAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCA 466 (543)
Q Consensus 401 ~~~~C~~C~k~I~~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~ 466 (543)
...+|.+|++.|.++++.++++.||++||+|..|++.|.+..|+ .+++++||+.||.++|+++|.
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYF-FVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTTCCCSSSCCCTTTSCCE-EETTEEECHHHHHHHSSSCCC
T ss_pred cCCCcccCCCEecccEEEECCceECccCCEecCCCCCCCCCCeE-eECCEEECHHHHHHHhCCCCC
Confidence 45789999999999889999999999999999999999987775 579999999999999999875
No 56
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.32 E-value=6.9e-13 Score=111.76 Aligned_cols=66 Identities=24% Similarity=0.497 Sum_probs=59.5
Q ss_pred ccccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccccccccccchhhh
Q psy14113 314 EYFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCA 385 (543)
Q Consensus 314 ~~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~~~~~~~fa~kCa 385 (543)
.+..+|.+|++.|.+ +++.++++.||++||+|..|++.|.+..|+.+++++||+.||. ++|+++|+
T Consensus 23 ~~~~~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~----~~f~~~c~ 88 (90)
T 2dar_A 23 KRTPMCAHCNQVIRG--PFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYE----KFFASGPS 88 (90)
T ss_dssp TCCCBBSSSCCBCCS--CEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHH----HHTSCCCC
T ss_pred CCCCCCccCCCEecc--eEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHH----HHcCCCCC
Confidence 456789999999964 5789999999999999999999999889999999999999997 67888884
No 57
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.31 E-value=1.1e-12 Score=108.54 Aligned_cols=65 Identities=29% Similarity=0.609 Sum_probs=57.6
Q ss_pred cccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccccccccccchhhh
Q psy14113 315 YFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCA 385 (543)
Q Consensus 315 ~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~~~~~~~fa~kCa 385 (543)
...+|.+|++.|... .++.++++.||++||+|..|++.|.+ .|+.++|++||+.||. ++|+++|+
T Consensus 14 ~~~~C~~C~~~I~~~-~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~----~~fg~~C~ 78 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHG-QSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYH----AQFGSGPS 78 (80)
T ss_dssp SCSCCTTTCCCCSSS-CCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHH----HHTTCCST
T ss_pred CCCCCcCcCCeeCCC-eEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHH----HHcCCCCC
Confidence 456899999999754 36899999999999999999999985 6999999999999998 67888874
No 58
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.30 E-value=1.2e-12 Score=107.91 Aligned_cols=74 Identities=22% Similarity=0.418 Sum_probs=57.8
Q ss_pred CeeeeccccccccccccchhhhccccchhhhhcccccccccccccCccceeeeeeccCccccCcCccCCCCCCCCCCCce
Q psy14113 364 GRVYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPF 443 (543)
Q Consensus 364 G~~yC~~cY~~~~~~~fa~kCa~C~~~I~~~~s~~~~~~~~C~~C~k~I~~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f 443 (543)
+.+||+.||. ++|+++| .+|++.|.++++.++++.||++||+|..|+++|....|
T Consensus 2 ~~~yC~~dy~----~~~~~~C---------------------~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~ 56 (81)
T 1v6g_A 2 SSGSSGLDYQ----RLYGTRC---------------------FSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDR 56 (81)
T ss_dssp CCCCCCSCGG----GSCCCBC---------------------TTTCCBCCSCCEEETTEEECTTTSSCSSSCCCCCSSSC
T ss_pred CCCcchHHHH----hHhCCcC---------------------ccccCEeccceEEECCceeCccCCccccCCCCCCCCCE
Confidence 4689999998 5566555 67777777788999999999999999999999986555
Q ss_pred eeeecCceeccchhhhhcc
Q psy14113 444 TVDVDNKIYCVNDYHRMFA 462 (543)
Q Consensus 444 ~v~~dGkpYC~~CY~k~f~ 462 (543)
+...++.+||..||.+++.
T Consensus 57 ~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 57 VTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp EEEETTEEEEHHHHSCCSS
T ss_pred EEeCCCCEEChhhhcccCC
Confidence 4433445799999876543
No 59
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.30 E-value=1.4e-12 Score=106.37 Aligned_cols=66 Identities=20% Similarity=0.435 Sum_probs=59.0
Q ss_pred cccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeec-cccccccccccchhhh
Q psy14113 315 YFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCE-EDYLYSGFQQTAEKCA 385 (543)
Q Consensus 315 ~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~-~cY~~~~~~~fa~kCa 385 (543)
+..+|.+|++.|...+ .+.++++.||.+||+|..|+++|.+..|+.+++++||+ .||. ++|+++|.
T Consensus 8 ~~~~C~~C~~~I~~~~-~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~----~~f~~kc~ 74 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAE-KVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYA----TLFGSGPS 74 (76)
T ss_dssp CCCBCTTTCCBCCTTT-EEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHH----HHSCSSCS
T ss_pred CCCCCcCCCCEeECCe-EEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHH----HhcccccC
Confidence 4578999999998544 68899999999999999999999988899999999999 7997 67888874
No 60
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.29 E-value=5.7e-13 Score=109.61 Aligned_cols=66 Identities=23% Similarity=0.497 Sum_probs=59.6
Q ss_pred cccccccccCccceeeeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhcccccc
Q psy14113 400 QTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCA 466 (543)
Q Consensus 400 ~~~~~C~~C~k~I~~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~ 466 (543)
....+|.+|++.|.++++.++++.||++||+|..|++.|.+..|+ .+++++||+.||.++|++++.
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHF-FVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECSSCEECTTTTSCSSSCCCHHHHCCE-ESSSCEECHHHHHHHHSSCCC
T ss_pred CCCCccccCCCCccCcEEEECcceeCcCcCeeCCCCCCCCCCCeE-eECCEEECHHHHHHHhCCCCC
Confidence 346789999999998899999999999999999999999877775 579999999999999999875
No 61
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.29 E-value=1.1e-12 Score=106.85 Aligned_cols=66 Identities=27% Similarity=0.627 Sum_probs=57.2
Q ss_pred cccccccccCccce--eeeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhcccccc
Q psy14113 400 QTAEKCAICGHLIM--EMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCA 466 (543)
Q Consensus 400 ~~~~~C~~C~k~I~--~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~ 466 (543)
....+|.+|++.|. +.++.++++.||.+||+|..|+++|.+..|+ .++|++||+.||.++|+++|.
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFY-EFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSE-EETTEEECHHHHHHHCCCC--
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeE-eECCeEeCHHHHHHHhhcccC
Confidence 34578899999996 4678899999999999999999999977774 689999999999999999995
No 62
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.29 E-value=1.1e-12 Score=103.94 Aligned_cols=62 Identities=31% Similarity=0.740 Sum_probs=55.6
Q ss_pred cccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccccccccccch
Q psy14113 315 YFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAE 382 (543)
Q Consensus 315 ~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~~~~~~~fa~ 382 (543)
+..+|.+|++.|.+ +++.++++.||.+||+|..|+++|.+..|+.++|++||+.||. ++|++
T Consensus 4 ~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~----~~f~~ 65 (66)
T 1nyp_A 4 GVPICGACRRPIEG--RVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYN----QLFGD 65 (66)
T ss_dssp CCCEETTTTEECCS--CEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHH----HHCSC
T ss_pred CCCCCcccCCEecc--eEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHH----HHhCC
Confidence 46789999999983 4799999999999999999999999889999999999999997 45554
No 63
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.29 E-value=1.6e-12 Score=104.64 Aligned_cols=59 Identities=41% Similarity=0.933 Sum_probs=54.7
Q ss_pred cccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccc
Q psy14113 315 YFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYL 373 (543)
Q Consensus 315 ~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~ 373 (543)
+..+|.+|++.|.+.+.++.++++.||.+||+|..|+++|.+..|+.+++++||+.||.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~ 62 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYV 62 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHH
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHH
Confidence 46789999999987666899999999999999999999998888999999999999997
No 64
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.29 E-value=1.9e-12 Score=103.78 Aligned_cols=65 Identities=32% Similarity=0.681 Sum_probs=58.2
Q ss_pred ccccccccCccceeeeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhcccccc
Q psy14113 401 TAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCA 466 (543)
Q Consensus 401 ~~~~C~~C~k~I~~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~ 466 (543)
+..+|.+|++.|.++++.++++.||++||+|..|+++|.+..|+ .++|++||+.||.++|+++..
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFV-KNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp CSSBCSSSCCBCCSCCEEETTEEECTTTSBCSSSCCBCSSSCCE-EETTEEECHHHHHHHHCCCSC
T ss_pred CCCcCccCCCEecceEEEECcccccccCCEeCCCCCcCCCCccE-eECCeEECHHHhhhhcCCCCC
Confidence 35678999999998899999999999999999999999988775 579999999999999987653
No 65
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.28 E-value=2e-12 Score=106.60 Aligned_cols=64 Identities=23% Similarity=0.443 Sum_probs=57.8
Q ss_pred ccccccccCccceeeeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhcccccc
Q psy14113 401 TAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCA 466 (543)
Q Consensus 401 ~~~~C~~C~k~I~~~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~ 466 (543)
+.++|.+|++.|.++.+.++++.||++||+|..|+++|.+..| .++|++||+.||.++|++.+.
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f--~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 14 GKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADAR--ELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTTCE--EETTEEECHHHHHTTSCCSSC
T ss_pred CCCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCCCE--eECCEEeCHHHHHHhCCCCCC
Confidence 4578899999999888999999999999999999999997754 679999999999999998764
No 66
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.27 E-value=4.1e-12 Score=106.79 Aligned_cols=63 Identities=29% Similarity=0.767 Sum_probs=57.0
Q ss_pred ccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccccccccccchhh
Q psy14113 316 FGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKC 384 (543)
Q Consensus 316 ~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~~~~~~~fa~kC 384 (543)
..+|.+|++.|.+ +++.++++.||.+||+|..|++.|.+..|+.+++++||+.||. ++|+++|
T Consensus 25 ~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~----~~f~p~~ 87 (89)
T 1x64_A 25 MPLCDKCGSGIVG--AVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHAR----ARTSGPS 87 (89)
T ss_dssp CCBCTTTCCBCCS--CCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHH----HHSSSCC
T ss_pred CCCcccCCCEecc--cEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHH----HHhCCCC
Confidence 5689999999986 5689999999999999999999999888999999999999997 6777765
No 67
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.24 E-value=3.7e-12 Score=107.48 Aligned_cols=67 Identities=27% Similarity=0.608 Sum_probs=59.3
Q ss_pred ccccccccCcccee-eeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhcccccccc
Q psy14113 401 TAEKCAICGHLIME-MILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAAC 468 (543)
Q Consensus 401 ~~~~C~~C~k~I~~-~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~~C 468 (543)
...+|.+|++.|.+ +.+.++++.||++||+|..|++.|.+..|+ .+++++||+.||.++|+++|..+
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~~f~~kc~~~ 81 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYA-SLHGRIYCKPHFNQLFKSKGNYD 81 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCC-CSSSCCCCHHHHHHHSCCCSCCC
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcE-eECCEEECHHHHHHHhCCCcCcc
Confidence 45688999999975 678899999999999999999999987774 68999999999999999999833
No 68
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.23 E-value=4.2e-12 Score=101.69 Aligned_cols=58 Identities=33% Similarity=0.618 Sum_probs=53.2
Q ss_pred ccccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccc
Q psy14113 314 EYFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYL 373 (543)
Q Consensus 314 ~~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~ 373 (543)
.+..+|.+|++.|.+ +++.++++.||++||+|..|+++|.+..|+.++|++||+.||.
T Consensus 3 ~~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~ 60 (70)
T 2d8x_A 3 SGSSGCHQCGEFIIG--RVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHN 60 (70)
T ss_dssp CCSSBCSSSCCBCCS--CCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHH
T ss_pred CCCCcCccCCCEecc--eEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhh
Confidence 345789999999985 4799999999999999999999999888999999999999997
No 69
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.23 E-value=4.2e-12 Score=101.50 Aligned_cols=60 Identities=32% Similarity=0.772 Sum_probs=54.9
Q ss_pred ccccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccc
Q psy14113 314 EYFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYL 373 (543)
Q Consensus 314 ~~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~ 373 (543)
....+|.+|++.|.+.+.++.++++.||.+||+|..|+++|.+..|+.++|++||+.||.
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~ 68 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQ 68 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHH
T ss_pred cCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHH
Confidence 345689999999987777788999999999999999999999888999999999999996
No 70
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.23 E-value=9e-12 Score=101.20 Aligned_cols=67 Identities=21% Similarity=0.436 Sum_probs=57.4
Q ss_pred hccccccccCCCCCCCCCCcceEEEEeCCCcccCCCCccCCCCCcCCCCCCcceeecCCcccCchhhhhhhhccCC
Q psy14113 460 MFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLMCRACHLSHLSRHHQ 535 (543)
Q Consensus 460 ~f~pkC~~C~k~I~~~eg~~e~~~v~a~dk~yH~~CF~C~~C~k~L~~~~~~~~~~~dg~~yC~~C~~~~~~~~~~ 535 (543)
+|+++|.+|+++|.+. .|.++++.||++||+|..|++.|..+ ..|+..++++||..|+.++......
T Consensus 3 ~~~~~C~~C~~~I~~~-------~v~a~~~~wH~~CF~C~~C~~~L~~~--~~f~~~~~~~yC~~C~~~~~~~~~~ 69 (73)
T 1wig_A 3 SGSSGCDSCEKYITGR-------VLEAGEKHYHPSCALCVRCGQMFAEG--EEMYLQGSSIWHPACRQAARTEDSG 69 (73)
T ss_dssp CSCCSCSSSCCCCSSC-------CBCCSSCCBCTTTSCCSSSCCCCCSS--CCCEEETTEEECTTHHHHTSSSSCC
T ss_pred cCcCCcccCCCEecCe-------eEEeCCCCCCCCcCEeCCCCCCCCCC--CeeEeeCCEEEChHHChHhhccccc
Confidence 5789999999999852 36799999999999999999999854 3688889999999999988776543
No 71
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.22 E-value=3.4e-12 Score=107.74 Aligned_cols=66 Identities=26% Similarity=0.540 Sum_probs=59.2
Q ss_pred cccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccccccccccchhhh
Q psy14113 315 YFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCA 385 (543)
Q Consensus 315 ~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~~~~~~~fa~kCa 385 (543)
...+|.+|++.|.+.+ .+.++++.||.+||+|..|++.|.+..|+.+++++||+.||. ++|+++|+
T Consensus 14 ~~~~C~~C~~~I~~~~-~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~----~~f~~kc~ 79 (91)
T 2d8y_A 14 ARETCVECQKTVYPME-RLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFN----QLFKSKGN 79 (91)
T ss_dssp SSCBCTTTCCBCCTTS-EEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHH----HHSCCCSC
T ss_pred CCCcCccCCCccCCce-eEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHH----HHhCCCcC
Confidence 3568999999998655 579999999999999999999999888999999999999997 67888885
No 72
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.22 E-value=9e-12 Score=101.19 Aligned_cols=62 Identities=23% Similarity=0.435 Sum_probs=54.4
Q ss_pred cccccccCccceeeeeeccCccccCcCccCCCCCCCCC-CCceeeeecCceeccchhhhhcccc
Q psy14113 402 AEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLD-GVPFTVDVDNKIYCVNDYHRMFAPK 464 (543)
Q Consensus 402 ~~~C~~C~k~I~~~~v~a~gk~wH~~CF~Cs~C~~~L~-g~~f~v~~dGkpYC~~CY~k~f~pk 464 (543)
.++|.+|++.|.++++.++++.||++||+|..|+++|. +..|+ ..++++||..||.++++..
T Consensus 5 ~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~-~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 5 SSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMY-LQGSSIWHPACRQAARTED 67 (73)
T ss_dssp CCSCSSSCCCCSSCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCE-EETTEEECTTHHHHTSSSS
T ss_pred cCCcccCCCEecCeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeE-eeCCEEEChHHChHhhccc
Confidence 45778899999888899999999999999999999998 66664 5799999999999987754
No 73
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.22 E-value=6.5e-12 Score=101.02 Aligned_cols=65 Identities=26% Similarity=0.626 Sum_probs=55.6
Q ss_pred cccccccCcccee--eeeeccCccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhcccccccc
Q psy14113 402 AEKCAICGHLIME--MILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAAC 468 (543)
Q Consensus 402 ~~~C~~C~k~I~~--~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~~C 468 (543)
.++|.+|++.|.+ .++.++++.||++||+|..|+++|.+..|+ .+++++||+.||.++|+ +|..+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~~~-~~~~~ 71 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFY-AVERRAYCEGCYVATLE-SGPSS 71 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEE-ESSSCEEEHHHHHHHHH-TCSSC
T ss_pred CCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCE-eeCCeEECHHHHHHHHc-cCCCC
Confidence 4678899998874 689999999999999999999999887784 68999999999999884 55543
No 74
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.20 E-value=8.5e-12 Score=111.14 Aligned_cols=69 Identities=20% Similarity=0.578 Sum_probs=60.3
Q ss_pred ccccCCceeecCcceeeccCceeccCCcccCccCCCC-CCCceeeeCCeeeeccccccccccccchhhhccccc
Q psy14113 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRAL-RGKAFYNVHGRVYCEEDYLYSGFQQTAEKCAICGHL 390 (543)
Q Consensus 318 ~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L-~~~~f~~~dG~~yC~~cY~~~~~~~fa~kCa~C~~~ 390 (543)
.|.+|++.|...+.++.++++.||..||+|..|++.| .+..|+.+++++||+.||. ++|+++|..+...
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~----~~~~~~~~~~~~~ 79 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIY----EWTKINGGSGGSG 79 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHH----HHHHHHTCCCCCC
T ss_pred cccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhH----HHhccccCCCCCC
Confidence 7999999998766788999999999999999999999 4567999999999999997 6788888655433
No 75
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.19 E-value=3e-12 Score=105.31 Aligned_cols=63 Identities=24% Similarity=0.697 Sum_probs=56.2
Q ss_pred ccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccccccccccchhh
Q psy14113 316 FGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKC 384 (543)
Q Consensus 316 ~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~~~~~~~fa~kC 384 (543)
..+|.+|++.|.+ +++.++++.||.+||+|..|++.|.+..|+.+++++||+.||. ++|++++
T Consensus 15 ~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~----~~~~p~g 77 (79)
T 1x62_A 15 LPMCDKCGTGIVG--VFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHAR----ERVSGPS 77 (79)
T ss_dssp CCCCSSSCCCCCS--SCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHH----HHHSSCC
T ss_pred CCccccCCCCccC--cEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHH----HHhCCCC
Confidence 4689999999986 4799999999999999999999998878999999999999997 5666654
No 76
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.19 E-value=1.2e-11 Score=110.16 Aligned_cols=71 Identities=27% Similarity=0.538 Sum_probs=61.9
Q ss_pred cccccCccce--eeeeeccCccccCcCccCCCCCCCCC-CCceeeeecCceeccchhhhhccccccccCCCCCCC
Q psy14113 404 KCAICGHLIM--EMILQAMGKSYHPGCFRCCLCNECLD-GVPFTVDVDNKIYCVNDYHRMFAPKCAACGKGITPV 475 (543)
Q Consensus 404 ~C~~C~k~I~--~~~v~a~gk~wH~~CF~Cs~C~~~L~-g~~f~v~~dGkpYC~~CY~k~f~pkC~~C~k~I~~~ 475 (543)
+|.+|++.|. +.++.++++.||.+||+|..|++.|. +..|+ ..++++||+.||.++|+++|..|...+...
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~ 83 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYL-LINSDIVCEQDIYEWTKINGGSGGSGGSGG 83 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEE-ECSSSEEEGGGHHHHHHHHTCCCCCCSCCS
T ss_pred cccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEE-eeCCEEEcHHHhHHHhccccCCCCCCCccC
Confidence 6788888887 57889999999999999999999994 66674 579999999999999999999998887643
No 77
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.18 E-value=8.9e-12 Score=103.45 Aligned_cols=67 Identities=24% Similarity=0.523 Sum_probs=57.4
Q ss_pred cccccccccCcccee-eeeeccCccccCcCccCCCCCCCCCCCceee-eecCceeccchhhhhcccccc
Q psy14113 400 QTAEKCAICGHLIME-MILQAMGKSYHPGCFRCCLCNECLDGVPFTV-DVDNKIYCVNDYHRMFAPKCA 466 (543)
Q Consensus 400 ~~~~~C~~C~k~I~~-~~v~a~gk~wH~~CF~Cs~C~~~L~g~~f~v-~~dGkpYC~~CY~k~f~pkC~ 466 (543)
....+|.+|++.|.+ +.+.++++.||.+||+|..|++.|....|.. .++|++||+.||.++|+..+.
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~ 81 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPSS 81 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCCC
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCCC
Confidence 346789999999964 6777999999999999999999999888763 479999999999999876553
No 78
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.18 E-value=1.1e-11 Score=102.13 Aligned_cols=65 Identities=23% Similarity=0.429 Sum_probs=55.9
Q ss_pred CccccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCceeeeCCeeeeccccccccccccchhh
Q psy14113 313 GEYFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKC 384 (543)
Q Consensus 313 ~~~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY~~~~~~~fa~kC 384 (543)
..+..+|.+|++.|.+ +++.++++.||.+||+|..|+++|.+. ++.++|++||+.||. ++|++++
T Consensus 12 ~~~~~~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L~~~-~f~~~g~~yC~~cy~----~~f~p~~ 76 (79)
T 2cor_A 12 GLGKYICQKCHAIIDE--QPLIFKNDPYHPDHFNCANCGKELTAD-ARELKGELYCLPCHD----KMGVSGP 76 (79)
T ss_dssp CCCCCBCTTTCCBCCS--CCCCCSSSCCCTTTSBCSSSCCBCCTT-CEEETTEEECHHHHH----TTSCCSS
T ss_pred ccCCCCCccCCCEecc--eEEEECcceeCCCCCEeCCCCCccCCC-CEeECCEEeCHHHHH----HhCCCCC
Confidence 3456799999999984 568999999999999999999999976 459999999999997 5676654
No 79
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.16 E-value=1.6e-11 Score=98.10 Aligned_cols=65 Identities=25% Similarity=0.545 Sum_probs=56.3
Q ss_pred hhhccccccccCCCCCCCCCCcceEEEEeCCCcccCCCCccCCCCCcCCCCCCcceeecCCcccCchhhhhhh
Q psy14113 458 HRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLMCRACHLSHL 530 (543)
Q Consensus 458 ~k~f~pkC~~C~k~I~~~eg~~e~~~v~a~dk~yH~~CF~C~~C~k~L~~~~~~~~~~~dg~~yC~~C~~~~~ 530 (543)
...+.++|.+|+++|.+.+ ..+.++++.||++||+|..|++.|..+ .|+..+|++||+.|+.+++
T Consensus 7 ~~~~~~~C~~C~~~i~~~e-----~~~~~~~~~~H~~CF~C~~C~~~L~~~---~~~~~~g~~yC~~~y~~lf 71 (72)
T 3f6q_B 7 QGSASATCERCKGGFAPAE-----KIVNSNGELYHEQCFVCAQCFQQFPEG---LFYEFEGRKYCEHDFQMLF 71 (72)
T ss_dssp CCCTTCBCTTTCCBCCTTC-----EEEEETTEEEETTTSSCTTTCCCCGGG---CCEEETTEEECHHHHHHHT
T ss_pred cCcCCccchhcCccccCCc-----eEEEeCcCeeCcCCCcccCCCCCCCCC---CeEeECCeEeCHHHHHHhh
Confidence 3467899999999998754 235689999999999999999999986 5888999999999998875
No 80
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.15 E-value=2e-11 Score=96.79 Aligned_cols=58 Identities=29% Similarity=0.636 Sum_probs=52.8
Q ss_pred ccccccCCceeecCcceeeccCceec--cCCcccCccCCCCCCCceeeeCCeeee-ccccc
Q psy14113 316 FGICHTCGEKVTGAGQACQAMGNLYH--TNCFICCSCGRALRGKAFYNVHGRVYC-EEDYL 373 (543)
Q Consensus 316 ~~~C~~C~k~I~g~~~~v~a~gk~wH--~~CF~Cs~C~~~L~~~~f~~~dG~~yC-~~cY~ 373 (543)
.++|.+|++.|...++.+.++|+.|| .+||+|..|+++|.+..|+.++|++|| .+||.
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~ 62 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 62 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHH
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhh
Confidence 45799999999864568999999999 999999999999999899999999999 78875
No 81
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.14 E-value=2.8e-11 Score=100.40 Aligned_cols=58 Identities=24% Similarity=0.562 Sum_probs=51.6
Q ss_pred cccccccCCceeecCcceeeccCceeccCCcccCccCCCCCCCcee--eeCCeeeeccccc
Q psy14113 315 YFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFY--NVHGRVYCEEDYL 373 (543)
Q Consensus 315 ~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~~~~f~--~~dG~~yC~~cY~ 373 (543)
...+|.+|++.|...+ .+.++++.||.+||+|..|++.|....|+ .++|++||+.||.
T Consensus 14 ~~~~C~~C~~~I~~~e-~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~ 73 (82)
T 2co8_A 14 AGDLCALCGEHLYVLE-RLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLP 73 (82)
T ss_dssp SSCBCSSSCCBCCTTT-BCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCC
T ss_pred CCCCCcccCCCcccce-EEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHH
Confidence 4568999999997655 47799999999999999999999988887 4799999999997
No 82
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.11 E-value=2e-11 Score=109.23 Aligned_cols=58 Identities=31% Similarity=0.744 Sum_probs=52.3
Q ss_pred cccccccCCceeecCcceeeccCceeccCCcccCccCCCCC--CCceeeeCCeeeeccccc
Q psy14113 315 YFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALR--GKAFYNVHGRVYCEEDYL 373 (543)
Q Consensus 315 ~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF~Cs~C~~~L~--~~~f~~~dG~~yC~~cY~ 373 (543)
+..+|.+|++.|.+. .++.++++.||.+||+|..|++.|. +..|+.++|++||+.||.
T Consensus 60 ~~~~C~~C~~~I~~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~ 119 (123)
T 2l4z_A 60 SWKRCAGCGGKIADR-FLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 119 (123)
T ss_dssp SCSBBSSSSSBCCSS-SEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHH
T ss_pred cCCcCcCCCCCcCCc-EEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhh
Confidence 457899999999865 3689999999999999999999997 468999999999999997
No 83
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.11 E-value=2.5e-11 Score=108.67 Aligned_cols=61 Identities=34% Similarity=0.726 Sum_probs=54.1
Q ss_pred ccccccccCccceee-eeeccCccccCcCccCCCCCCCCC--CCceeeeecCceeccchhhhhcc
Q psy14113 401 TAEKCAICGHLIMEM-ILQAMGKSYHPGCFRCCLCNECLD--GVPFTVDVDNKIYCVNDYHRMFA 462 (543)
Q Consensus 401 ~~~~C~~C~k~I~~~-~v~a~gk~wH~~CF~Cs~C~~~L~--g~~f~v~~dGkpYC~~CY~k~f~ 462 (543)
..++|.+|++.|.+. ++.++++.||++||+|..|++.|. +..| +.++|++||+.||.++|+
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f-~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCC-BCSSSCCBCHHHHHHHCC
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCce-EEECCEEeCHHHhhhhcC
Confidence 467899999999975 689999999999999999999996 4566 468999999999999885
No 84
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.08 E-value=5.3e-11 Score=94.32 Aligned_cols=58 Identities=33% Similarity=0.648 Sum_probs=50.9
Q ss_pred cccccccCccce--eeeeeccCcccc--CcCccCCCCCCCCCCCceeeeecCceec-cchhhhh
Q psy14113 402 AEKCAICGHLIM--EMILQAMGKSYH--PGCFRCCLCNECLDGVPFTVDVDNKIYC-VNDYHRM 460 (543)
Q Consensus 402 ~~~C~~C~k~I~--~~~v~a~gk~wH--~~CF~Cs~C~~~L~g~~f~v~~dGkpYC-~~CY~k~ 460 (543)
.++|.+|+++|. ++.+.++++.|| ++||+|..|+++|.+..|+ .++|++|| ..||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~-~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFM-PVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCE-EETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceE-EECCEEecCHHHhhhh
Confidence 356788999998 689999999999 9999999999999988885 68999999 8888664
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=96.73 E-value=0.00044 Score=47.06 Aligned_cols=28 Identities=25% Similarity=0.712 Sum_probs=24.9
Q ss_pred cccccCCceeecCcceeeccCceeccCCc
Q psy14113 317 GICHTCGEKVTGAGQACQAMGNLYHTNCF 345 (543)
Q Consensus 317 ~~C~~C~k~I~g~~~~v~a~gk~wH~~CF 345 (543)
..|..|++.|+..++ +.++|+.||..||
T Consensus 4 ~~C~~C~k~Vy~~Ek-~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEK-VNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGC-CCSSSSCCCGGGC
T ss_pred CcCCccCCEEeccee-EEECCeEecccCC
Confidence 479999999997765 7899999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=96.24 E-value=0.00084 Score=45.66 Aligned_cols=29 Identities=45% Similarity=0.976 Sum_probs=25.3
Q ss_pred cccccccCCCCCCCCCCcceEEEEeCCCcccCCCC
Q psy14113 462 APKCAACGKGITPVEGTEETVRVVSMDKDFHVDCY 496 (543)
Q Consensus 462 ~pkC~~C~k~I~~~eg~~e~~~v~a~dk~yH~~CF 496 (543)
.++|..|++.|.+.| ++.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~E------k~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTE------KVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGG------CCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecce------eEEECCeEecccCC
Confidence 578999999999875 36789999999998
No 87
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=58.55 E-value=5.8 Score=33.71 Aligned_cols=82 Identities=16% Similarity=0.312 Sum_probs=53.0
Q ss_pred ecCceeccchhhhhc--cccccccCCCCCCCCCCcceEEEEeCCCcccCCCCccCCCCCcCCCC---CCcceeecCCccc
Q psy14113 447 VDNKIYCVNDYHRMF--APKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDE---PDKRCYPLQGRLM 521 (543)
Q Consensus 447 ~dGkpYC~~CY~k~f--~pkC~~C~k~I~~~eg~~e~~~v~a~dk~yH~~CF~C~~C~k~L~~~---~~~~~~~~dg~~y 521 (543)
.=|+.||..|..+.+ ...|..|++.+...+ +.... .-.+=+.|..|...+... ........=|+.|
T Consensus 31 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~-----l~~l~----i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f 101 (133)
T 4ap4_A 31 ECGHVFCSQCLRDSLKNANTCPTCRKKINHKR-----YHPIY----IGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVF 101 (133)
T ss_dssp TTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC-----EEECB----CSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEE
T ss_pred CCCChhhHHHHHHHHHhCCCCCCCCCcCcccc-----ccccc----cCCCCCCCCCCCCccccccccCcceEeCCCCChh
Confidence 347788888886643 458999999997643 11111 223456788888877652 0011223459999
Q ss_pred CchhhhhhhhccCCCC
Q psy14113 522 CRACHLSHLSRHHQSP 537 (543)
Q Consensus 522 C~~C~~~~~~~~~~~~ 537 (543)
|..|...++......+
T Consensus 102 c~~Ci~~~~~~~~~CP 117 (133)
T 4ap4_A 102 CSQCLRDSLKNANTCP 117 (133)
T ss_dssp EHHHHHHHHHHCSBCT
T ss_pred hHHHHHHHHHcCCCCC
Confidence 9999999888765443
No 88
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=49.98 E-value=10 Score=32.18 Aligned_cols=25 Identities=24% Similarity=0.589 Sum_probs=11.0
Q ss_pred Cceeccchhhhh--ccccccccCCCCC
Q psy14113 449 NKIYCVNDYHRM--FAPKCAACGKGIT 473 (543)
Q Consensus 449 GkpYC~~CY~k~--f~pkC~~C~k~I~ 473 (543)
|..||..|..+. ....|..|+..|.
T Consensus 98 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 98 GHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 444555554322 1234555555544
No 89
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.05 E-value=21 Score=27.16 Aligned_cols=45 Identities=20% Similarity=0.462 Sum_probs=30.6
Q ss_pred CccCCCCCCCCCCCceeeeecCceeccchhhhhcc-----ccccccCCCCCC
Q psy14113 428 CFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFA-----PKCAACGKGITP 474 (543)
Q Consensus 428 CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~-----pkC~~C~k~I~~ 474 (543)
-+.|..|...+.. ...+ .=|+.||..|..+.+. ..|..|++.|..
T Consensus 20 ~~~C~IC~~~~~~-~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 20 EVICPICLDILQK-PVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCBCTTTCSBCSS-EEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CCEeccCCcccCC-eEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3567777766653 2222 4588899999877653 378889888864
No 90
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=38.89 E-value=38 Score=28.98 Aligned_cols=65 Identities=12% Similarity=0.265 Sum_probs=41.5
Q ss_pred cCCCCCCCCCCCceeeeecCceeccchhhh---hccccccccCCCCCCCCCCcceEEEEeCCCcccCCCCccC---CCCC
Q psy14113 430 RCCLCNECLDGVPFTVDVDNKIYCVNDYHR---MFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCE---DCGL 503 (543)
Q Consensus 430 ~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k---~f~pkC~~C~k~I~~~eg~~e~~~v~a~dk~yH~~CF~C~---~C~k 503 (543)
.|..|+.++.--.- +..=+..+|..|+.. +-...|..|..+|... ....+|.. |.|. +|.+
T Consensus 3 fC~~C~~Pi~iygR-mIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV-------e~~~~~~i-----f~C~~~~~Ckr 69 (101)
T 3vk6_A 3 FCDKCGLPIKVYGR-MIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI-------EQCTRGSL-----FMCSIVQGCKR 69 (101)
T ss_dssp BCTTTCSBCSEEEE-EETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE-------EEEEGGGC-----CCCCCCCCCCC
T ss_pred ecCccCCCeEEEee-eccccccHHHHHHHHHHhccCCCCcCcCCeeeee-------EEeccCCE-----EECCCCCCHHH
Confidence 47778877753221 223467899999865 3457899999999732 22334554 6666 6777
Q ss_pred cCCC
Q psy14113 504 QLTD 507 (543)
Q Consensus 504 ~L~~ 507 (543)
.+-.
T Consensus 70 tyLs 73 (101)
T 3vk6_A 70 TYLS 73 (101)
T ss_dssp CCSS
T ss_pred HhcC
Confidence 6544
No 91
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.99 E-value=33 Score=26.18 Aligned_cols=47 Identities=19% Similarity=0.450 Sum_probs=31.6
Q ss_pred CccCCCCCCCCCCCceeeeecCceeccchhhhhc--cccccccCCCCCCC
Q psy14113 428 CFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMF--APKCAACGKGITPV 475 (543)
Q Consensus 428 CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f--~pkC~~C~k~I~~~ 475 (543)
-+.|..|...+.. ...+..=|+.||..|..+.+ ...|..|++.|...
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 15 YILCSICKGYLID-ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGSCTTTSSCCSS-CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCChHHHC-cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 4567777666653 22222457889999976644 46799999998754
No 92
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=34.65 E-value=32 Score=26.53 Aligned_cols=47 Identities=17% Similarity=0.387 Sum_probs=33.1
Q ss_pred CcCccCCCCCCCCCCCceeeeecCceeccchhhhhc---cccccccCCCCCC
Q psy14113 426 PGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMF---APKCAACGKGITP 474 (543)
Q Consensus 426 ~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f---~pkC~~C~k~I~~ 474 (543)
++-|.|..|...+.. ... ..-|+.||..|..+.+ ...|..|++.+..
T Consensus 6 ~~~~~C~IC~~~~~~-Pv~-~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKD-PVI-VSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSS-EEE-ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccC-CEE-cCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 345788888877653 332 3579999999987654 3468888888764
No 93
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.56 E-value=22 Score=26.72 Aligned_cols=44 Identities=23% Similarity=0.541 Sum_probs=29.4
Q ss_pred ccCCCCCCCCCCCceeeeecCceeccchhhhhc---cccccccCCCCCC
Q psy14113 429 FRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMF---APKCAACGKGITP 474 (543)
Q Consensus 429 F~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f---~pkC~~C~k~I~~ 474 (543)
+.|..|...+..... ..=|+.||..|..+.+ ...|..|++.|..
T Consensus 16 ~~C~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 16 YKCEKCHLVLCSPKQ--TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp EECTTTCCEESSCCC--CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCChHhcCeeE--CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 567777665543211 2457889999987765 3579999988864
No 94
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.42 E-value=39 Score=28.52 Aligned_cols=45 Identities=22% Similarity=0.476 Sum_probs=28.4
Q ss_pred ccCCCCCCCCCCCceeeeecCceeccchhhhhccccccccCCCCCC
Q psy14113 429 FRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAACGKGITP 474 (543)
Q Consensus 429 F~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~~C~k~I~~ 474 (543)
+.|..|...+.. ...+..=|+.||..|..+.+...|..|+..+..
T Consensus 23 ~~C~IC~~~~~~-pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 23 LRCSRCTNILRE-PVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWI 67 (117)
T ss_dssp TSCSSSCSCCSS-CBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSC
T ss_pred CCCCCCChHhhC-ccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCcc
Confidence 566666555542 221213577788888777666778888888753
No 95
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=31.92 E-value=46 Score=23.58 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=25.2
Q ss_pred ccCCCCCCCCCC--CceeeeecCceeccchhhhhc--cccccccCCCCC
Q psy14113 429 FRCCLCNECLDG--VPFTVDVDNKIYCVNDYHRMF--APKCAACGKGIT 473 (543)
Q Consensus 429 F~Cs~C~~~L~g--~~f~v~~dGkpYC~~CY~k~f--~pkC~~C~k~I~ 473 (543)
+.|..|...+.. ....+..=|..||..|..+.+ ...|..|++.|.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 445666555532 122222346677777776543 256888877764
No 96
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.88 E-value=38 Score=26.54 Aligned_cols=47 Identities=17% Similarity=0.350 Sum_probs=30.6
Q ss_pred ccCCCCCCCCCCCc--eeeeecCceeccchhhhhcc-----ccccccCCCCCCC
Q psy14113 429 FRCCLCNECLDGVP--FTVDVDNKIYCVNDYHRMFA-----PKCAACGKGITPV 475 (543)
Q Consensus 429 F~Cs~C~~~L~g~~--f~v~~dGkpYC~~CY~k~f~-----pkC~~C~k~I~~~ 475 (543)
+.|..|...+.... ..+..=|+.||..|..+.+. ..|..|++.+...
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 56777776665422 22224578899999876543 5788898887643
No 97
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.81 E-value=40 Score=26.00 Aligned_cols=44 Identities=18% Similarity=0.439 Sum_probs=29.4
Q ss_pred ccCCCCCCCCCCCceeeeecCceeccchhhhhc--------cccccccCCCCCC
Q psy14113 429 FRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMF--------APKCAACGKGITP 474 (543)
Q Consensus 429 F~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f--------~pkC~~C~k~I~~ 474 (543)
+.|..|...+..- ..+ .=|+.||..|..+.+ ...|..|+..+..
T Consensus 20 ~~C~IC~~~~~~p-~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 20 VTCPICLELLTQP-LSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCTTTCSCCSSC-BCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCcccCCc-eeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 5677777666432 222 457889999986643 4578888888864
No 98
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=31.80 E-value=18 Score=27.61 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=22.9
Q ss_pred ccCccCCCCCCCceeeeCCeeee-ccccc
Q psy14113 346 ICCSCGRALRGKAFYNVHGRVYC-EEDYL 373 (543)
Q Consensus 346 ~Cs~C~~~L~~~~f~~~dG~~yC-~~cY~ 373 (543)
.|..|+..+....-+.++|+.|| +.|..
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~ 37 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACAD 37 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHH
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHc
Confidence 57889888887788899999999 66664
No 99
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.98 E-value=54 Score=25.16 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=25.6
Q ss_pred ccCCCCCCCCCCC-ceeeeecCceeccchhhhhc--cccccccCCCCCCC
Q psy14113 429 FRCCLCNECLDGV-PFTVDVDNKIYCVNDYHRMF--APKCAACGKGITPV 475 (543)
Q Consensus 429 F~Cs~C~~~L~g~-~f~v~~dGkpYC~~CY~k~f--~pkC~~C~k~I~~~ 475 (543)
+.|..|...+... ...+..=|+.||..|..+.+ ...|..|++.|...
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 4555665554422 11111245667777765432 35688888887653
No 100
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=29.38 E-value=16 Score=30.01 Aligned_cols=11 Identities=18% Similarity=0.625 Sum_probs=7.6
Q ss_pred ccccCCceeec
Q psy14113 318 ICHTCGEKVTG 328 (543)
Q Consensus 318 ~C~~C~k~I~g 328 (543)
.|..|+..|..
T Consensus 4 ~CP~C~~~l~~ 14 (81)
T 2jrp_A 4 TCPVCHHALER 14 (81)
T ss_dssp CCSSSCSCCEE
T ss_pred CCCCCCCcccc
Confidence 57788777653
No 101
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=28.21 E-value=33 Score=27.38 Aligned_cols=46 Identities=28% Similarity=0.377 Sum_probs=28.5
Q ss_pred ccCCCCCCCCCCC--ceeeeecCceeccchhhhhc---cccccccCCCCCC
Q psy14113 429 FRCCLCNECLDGV--PFTVDVDNKIYCVNDYHRMF---APKCAACGKGITP 474 (543)
Q Consensus 429 F~Cs~C~~~L~g~--~f~v~~dGkpYC~~CY~k~f---~pkC~~C~k~I~~ 474 (543)
+.|..|-.++... .+.--.=|+.+|..|+.+.. ...|..|++.+..
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 4566666655422 22100147778999987764 3578888888864
No 102
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=27.78 E-value=20 Score=31.25 Aligned_cols=11 Identities=27% Similarity=0.455 Sum_probs=5.8
Q ss_pred CCeeeeccccc
Q psy14113 363 HGRVYCEEDYL 373 (543)
Q Consensus 363 dG~~yC~~cY~ 373 (543)
+|..+|..|..
T Consensus 24 ~g~~lCnaCgl 34 (115)
T 4hc9_A 24 TGHYLCNACGL 34 (115)
T ss_dssp TSCEECHHHHH
T ss_pred CCCCcCcchhh
Confidence 34455666643
No 103
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=27.42 E-value=34 Score=26.42 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=29.1
Q ss_pred CccCCCCCCCCCCCceeeeecCceeccchhhhhc--------cccccccCCCCCC
Q psy14113 428 CFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMF--------APKCAACGKGITP 474 (543)
Q Consensus 428 CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f--------~pkC~~C~k~I~~ 474 (543)
-+.|..|...+... .. ..=|+.||..|..+.+ ...|..|+..+..
T Consensus 19 ~~~C~IC~~~~~~p-~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 19 EVTCPICLELLKEP-VS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTSCTTTCSCCSSC-EE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCCcCCChhhCcc-ee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 36777777666432 22 2357888988876533 3568888888764
No 104
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=26.16 E-value=58 Score=23.00 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=9.0
Q ss_pred CcccCchhhhhhhhcc
Q psy14113 518 GRLMCRACHLSHLSRH 533 (543)
Q Consensus 518 g~~yC~~C~~~~~~~~ 533 (543)
++.||..|..+++...
T Consensus 28 gH~fc~~Ci~~~~~~~ 43 (55)
T 2ecm_A 28 GHLLHRTCYEEMLKEG 43 (55)
T ss_dssp SCEEETTHHHHHHHHT
T ss_pred CCcccHHHHHHHHHcC
Confidence 5556666655555544
No 105
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.69 E-value=43 Score=27.55 Aligned_cols=44 Identities=20% Similarity=0.544 Sum_probs=26.9
Q ss_pred ccCCCCCCCCCCCceeeeecCceeccchhhhhcc-----ccccccCCCCCC
Q psy14113 429 FRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFA-----PKCAACGKGITP 474 (543)
Q Consensus 429 F~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~-----pkC~~C~k~I~~ 474 (543)
+.|..|...+..- ..+ .=|+.||..|..+.+. ..|..|+..|..
T Consensus 22 ~~C~IC~~~~~~p-~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKEP-VST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSSC-CBC-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcCe-EEC-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4566665555322 111 3477888888776543 268888888764
No 106
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.08 E-value=47 Score=25.21 Aligned_cols=45 Identities=16% Similarity=0.377 Sum_probs=28.5
Q ss_pred CccCCCCCCCCCCCceeeeecCceeccchhhhhc--cccccccCCCCCC
Q psy14113 428 CFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMF--APKCAACGKGITP 474 (543)
Q Consensus 428 CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f--~pkC~~C~k~I~~ 474 (543)
-+.|..|...+... ..+ .=|+.||..|..+.+ ...|..|++.|..
T Consensus 15 ~~~C~IC~~~~~~~-~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 15 VPECAICLQTCVHP-VSL-PCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp CCBCSSSSSBCSSE-EEE-TTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCccCCcccCCC-EEc-cCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 35677776655432 212 357788888876543 3678888888763
No 107
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=24.59 E-value=1.7e+02 Score=24.89 Aligned_cols=42 Identities=26% Similarity=0.504 Sum_probs=23.1
Q ss_pred ccccccCCceeecCcceeecc----CceeccCCcccCccCCCCCCCceeeeCCeeeecccc
Q psy14113 316 FGICHTCGEKVTGAGQACQAM----GNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDY 372 (543)
Q Consensus 316 ~~~C~~C~k~I~g~~~~v~a~----gk~wH~~CF~Cs~C~~~L~~~~f~~~dG~~yC~~cY 372 (543)
...|..|+. + +.+|.-. .+.||..|+. |.. ...|.-||..|.
T Consensus 15 ~~~C~~C~~---~-G~ll~CD~~~Cp~~fH~~Cl~-------L~~----~P~g~W~Cp~c~ 60 (107)
T 4gne_A 15 EDYCFQCGD---G-GELVMCDKKDCPKAYHLLCLN-------LTQ----PPYGKWECPWHQ 60 (107)
T ss_dssp CSSCTTTCC---C-SEEEECCSTTCCCEECTGGGT-------CSS----CCSSCCCCGGGB
T ss_pred CCCCCcCCC---C-CcEeEECCCCCCcccccccCc-------CCc----CCCCCEECCCCC
Confidence 346888873 2 2334433 3578888763 321 124666776653
No 108
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron transfer, Fe reduction, GEO sulfurreducens, cytochrome C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Probab=24.46 E-value=9.8 Score=34.94 Aligned_cols=75 Identities=20% Similarity=0.492 Sum_probs=43.5
Q ss_pred ceeccchhhh--hccc--cccccCCCCCCCCCCcceEEE------EeCCCcccCCCCccCCCCCcCCCCCC-cceee---
Q psy14113 450 KIYCVNDYHR--MFAP--KCAACGKGITPVEGTEETVRV------VSMDKDFHVDCYMCEDCGLQLTDEPD-KRCYP--- 515 (543)
Q Consensus 450 kpYC~~CY~k--~f~p--kC~~C~k~I~~~eg~~e~~~v------~a~dk~yH~~CF~C~~C~k~L~~~~~-~~~~~--- 515 (543)
.-+|..|... .|.. .|..|...+.+.+ +.+ +..+...|..=+.|..|...+..... ..-+.
T Consensus 55 ~~~C~~CH~g~~af~~~~~C~~CH~~~~~~~-----i~~~~~~~~V~F~H~~H~~~~~C~~CH~~v~~~~~~~~~~tm~~ 129 (158)
T 3oue_A 55 GKSCGACHNGKDAFSSASDCGKCHPGLKPAK-----LTYKTSVGEAYFDHDIHLSMFKCADCHTKVFKYRKGSAPATMAD 129 (158)
T ss_dssp TCGGGGTBSSSSBCCTTSCHHHHCGGGCCCC-----EEEEETTEEEEECHHHHHTTCCGGGTBTTTBCSSTTSSCCCHHH
T ss_pred CCchhhhcCCcccCChhhhchhhhhcccccc-----eEeecCCCCccCChhHhCCCCChhhhccchhhcccCCCCcchhh
Confidence 3578888863 3443 6999987543321 112 23455568544899999987744311 01111
Q ss_pred cCCcccCchhhhhh
Q psy14113 516 LQGRLMCRACHLSH 529 (543)
Q Consensus 516 ~dg~~yC~~C~~~~ 529 (543)
+....+|..||...
T Consensus 130 ~~~gk~Cg~CH~gk 143 (158)
T 3oue_A 130 MEKGKSCGVCHNGK 143 (158)
T ss_dssp HHTTCGGGGTBTTT
T ss_pred hhccChhHhhcCCC
Confidence 23457999999743
No 109
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=24.33 E-value=48 Score=25.47 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=21.5
Q ss_pred CCccCCCCCcCCCCCCcceeecCCcccCchhhhhhhhc
Q psy14113 495 CYMCEDCGLQLTDEPDKRCYPLQGRLMCRACHLSHLSR 532 (543)
Q Consensus 495 CF~C~~C~k~L~~~~~~~~~~~dg~~yC~~C~~~~~~~ 532 (543)
-|.|..|...+.+. ....-|+.||+.|..+++..
T Consensus 8 ~~~C~IC~~~~~~P----v~~~CgH~fc~~Ci~~~~~~ 41 (78)
T 1t1h_A 8 YFRCPISLELMKDP----VIVSTGQTYERSSIQKWLDA 41 (78)
T ss_dssp SSSCTTTSCCCSSE----EEETTTEEEEHHHHHHHHTT
T ss_pred cCCCCCccccccCC----EEcCCCCeecHHHHHHHHHH
Confidence 46677777766553 22346777777777776654
No 110
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=24.08 E-value=72 Score=22.55 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=9.5
Q ss_pred CCcccCchhhhhhhhcc
Q psy14113 517 QGRLMCRACHLSHLSRH 533 (543)
Q Consensus 517 dg~~yC~~C~~~~~~~~ 533 (543)
=++.||..|..+++..+
T Consensus 27 C~H~f~~~Ci~~w~~~~ 43 (55)
T 1iym_A 27 CGHGFHAECVDMWLGSH 43 (55)
T ss_dssp SCCEECTTHHHHTTTTC
T ss_pred CCCcccHHHHHHHHHcC
Confidence 35566666665555443
No 111
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=23.94 E-value=63 Score=23.58 Aligned_cols=21 Identities=10% Similarity=0.379 Sum_probs=17.0
Q ss_pred eeecCCcccCchhhhhhhhcc
Q psy14113 513 CYPLQGRLMCRACHLSHLSRH 533 (543)
Q Consensus 513 ~~~~dg~~yC~~C~~~~~~~~ 533 (543)
|+..+..++|..|+..+.+.+
T Consensus 22 ~mSVnTQP~CHEC~errq~~~ 42 (49)
T 2eqg_A 22 FMSVNTQPLCHECSERRQKNQ 42 (49)
T ss_dssp BCCTTTTTSCHHHHHHHHTTS
T ss_pred EEEecCccchHHHHHHHhhcc
Confidence 555799999999999776653
No 112
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=23.10 E-value=67 Score=23.35 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=22.5
Q ss_pred ccCCCCCCCCCCCceeeeecCceeccchhhhhccccccccCCCCCC
Q psy14113 429 FRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAACGKGITP 474 (543)
Q Consensus 429 F~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~~C~k~I~~ 474 (543)
+.|..|...+..- .. ..=|+.||..|..+ ....|..|++.+..
T Consensus 7 ~~C~IC~~~~~~p-~~-l~CgH~fC~~Ci~~-~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 7 LRCQQCQAEAKCP-KL-LPCLHTLCSGCLEA-SGMQCPICQAPWPL 49 (56)
T ss_dssp SSCSSSCSSCBCC-SC-STTSCCSBTTTCSS-SSSSCSSCCSSSSC
T ss_pred CCceEeCCccCCe-EE-cCCCCcccHHHHcc-CCCCCCcCCcEeec
Confidence 3455555444321 11 12355566666544 34567778777764
No 113
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=22.85 E-value=54 Score=25.15 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=19.6
Q ss_pred CccCCCCCcCCCCCCcceeec-CCcccCchhhhhhhhc
Q psy14113 496 YMCEDCGLQLTDEPDKRCYPL-QGRLMCRACHLSHLSR 532 (543)
Q Consensus 496 F~C~~C~k~L~~~~~~~~~~~-dg~~yC~~C~~~~~~~ 532 (543)
+.|..|...+.+. .... =|+.||..|...++..
T Consensus 16 ~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~ 49 (74)
T 2yur_A 16 LLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLE 49 (74)
T ss_dssp GSCSSSCCCCTTC----EECSSSCCEECTTHHHHHHHH
T ss_pred CCCcCCChHHhCC----eEcCCCCCHHHHHHHHHHHHh
Confidence 5666666666553 1222 3777777777766654
No 114
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=22.79 E-value=38 Score=28.33 Aligned_cols=43 Identities=23% Similarity=0.531 Sum_probs=25.3
Q ss_pred ccCCCCCCCCCCCceeeeecCceeccchhhhhcc---ccccccCCCCC
Q psy14113 429 FRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFA---PKCAACGKGIT 473 (543)
Q Consensus 429 F~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~---pkC~~C~k~I~ 473 (543)
|.|..|...+.. ...+ .=|+.||..|..+.+. ..|..|+..|.
T Consensus 16 ~~C~iC~~~~~~-p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGICMEILVE-PVTL-PCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HBCTTTCSBCSS-CEEC-TTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCccCCcccCc-eeEc-CCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 566677655542 2222 3467788888766542 36777777664
No 115
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=22.72 E-value=71 Score=24.45 Aligned_cols=45 Identities=13% Similarity=0.432 Sum_probs=30.1
Q ss_pred CccCCCCCCCCCCCceeeee-cCceeccchhhhhcc----ccccccCCCCCC
Q psy14113 428 CFRCCLCNECLDGVPFTVDV-DNKIYCVNDYHRMFA----PKCAACGKGITP 474 (543)
Q Consensus 428 CF~Cs~C~~~L~g~~f~v~~-dGkpYC~~CY~k~f~----pkC~~C~k~I~~ 474 (543)
-+.|..|...+.. ...+ . =|+.||..|..+.+. ..|..|++.+..
T Consensus 15 ~~~C~IC~~~~~~-p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 15 ELLCLICKDIMTD-AVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGSCSSSCCCCTT-CEEC-SSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCcCCChHHhC-CeEc-CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 4677777766653 2222 3 388899999876553 479999887654
No 116
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=22.58 E-value=81 Score=26.46 Aligned_cols=76 Identities=18% Similarity=0.394 Sum_probs=38.2
Q ss_pred CccccCcCccCCCCCCCCCCCceeeeecCceeccchhhhhccccccccCCCCCCCCCCcceEEEEeCCCcccCCCCccCC
Q psy14113 421 GKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCED 500 (543)
Q Consensus 421 gk~wH~~CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~pkC~~C~k~I~~~eg~~e~~~v~a~dk~yH~~CF~C~~ 500 (543)
++.||..|+.=.. .++ ..+.-+|..|. .|..|++.-... ..+.-..=++.||..|..=
T Consensus 29 ~~~~H~~Cl~~~~--~~~--------~~~~W~C~~C~------~C~~C~~~~~~~----~ll~Cd~C~~~yH~~Cl~p-- 86 (111)
T 2ysm_A 29 GQHYHGMCLDIAV--TPL--------KRAGWQCPECK------VCQNCKQSGEDS----KMLVCDTCDKGYHTFCLQP-- 86 (111)
T ss_dssp CCEECTTTTTCCC--CTT--------TSTTCCCTTTC------CCTTTCCCSCCT----TEEECSSSCCEEEGGGSSS--
T ss_pred CCCcChHHhCCcc--ccc--------cccCccCCcCC------cccccCccCCCC----CeeECCCCCcHHhHHhcCC--
Confidence 4668887754221 111 23445666662 577777664321 1111112366788887643
Q ss_pred CCCcCCCCCCcceeecCCcccCchhhhh
Q psy14113 501 CGLQLTDEPDKRCYPLQGRLMCRACHLS 528 (543)
Q Consensus 501 C~k~L~~~~~~~~~~~dg~~yC~~C~~~ 528 (543)
.|..- -.+.-+|..|...
T Consensus 87 ---pl~~~-------P~g~W~C~~C~~c 104 (111)
T 2ysm_A 87 ---VMKSV-------PTNGWKCKNCRIC 104 (111)
T ss_dssp ---CCSSC-------CSSCCCCHHHHCC
T ss_pred ---ccccC-------CCCCcCCcCCcCc
Confidence 22221 1356678877544
No 117
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=22.12 E-value=21 Score=33.87 Aligned_cols=30 Identities=20% Similarity=0.448 Sum_probs=22.1
Q ss_pred CccCCCCCcCCCCCCcceeecCCcccCchhhhh
Q psy14113 496 YMCEDCGLQLTDEPDKRCYPLQGRLMCRACHLS 528 (543)
Q Consensus 496 F~C~~C~k~L~~~~~~~~~~~dg~~yC~~C~~~ 528 (543)
..|..|+...... +-...+|+++|..|+.+
T Consensus 173 ~~C~~CGE~~~~~---~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEA---DAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGG---GCEEETTEEECHHHHHC
T ss_pred eECCCCCCchhhc---ceeeeCCcEEChhhhcc
Confidence 3588888876664 22346899999999865
No 118
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=22.09 E-value=20 Score=33.97 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=23.8
Q ss_pred cccCccCCCCCCCceeeeCCeeeeccccc
Q psy14113 345 FICCSCGRALRGKAFYNVHGRVYCEEDYL 373 (543)
Q Consensus 345 F~Cs~C~~~L~~~~f~~~dG~~yC~~cY~ 373 (543)
.+|..||.......-...+|+.+|..|+.
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~C~~C~~ 201 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPVCKPDYY 201 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEECHHHHH
T ss_pred eECCCCCCchhhcceeeeCCcEEChhhhc
Confidence 57999998777666667899999999985
No 119
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=21.93 E-value=75 Score=30.76 Aligned_cols=30 Identities=30% Similarity=0.682 Sum_probs=16.3
Q ss_pred cccccccCCceeecCcceeeccCceeccCCc
Q psy14113 315 YFGICHTCGEKVTGAGQACQAMGNLYHTNCF 345 (543)
Q Consensus 315 ~~~~C~~C~k~I~g~~~~v~a~gk~wH~~CF 345 (543)
....|..|...|.. +..+.-=+..||..|+
T Consensus 179 ~i~~C~iC~~iv~~-g~~C~~C~~~~H~~C~ 208 (238)
T 3nw0_A 179 AVKICNICHSLLIQ-GQSCETCGIRMHLPCV 208 (238)
T ss_dssp TCCBCTTTCSBCSS-CEECSSSCCEECHHHH
T ss_pred CCCcCcchhhHHhC-CcccCccChHHHHHHH
Confidence 35679999887753 2212112345555554
No 120
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=21.84 E-value=49 Score=28.75 Aligned_cols=42 Identities=19% Similarity=0.453 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCCceeeeecCceeccchhhhhcc--ccccccCCCC
Q psy14113 429 FRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFA--PKCAACGKGI 472 (543)
Q Consensus 429 F~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~--pkC~~C~k~I 472 (543)
+.|..|...+..-... .=|+.||..|..+.+. ..|..|.+.|
T Consensus 54 ~~C~iC~~~~~~~~~~--~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTL--NCAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp SBCTTTCSBCSSEEEE--TTSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred CCCcccCcccCCceEC--CCCCCccHHHHHHHHHcCCcCCCCCCcC
No 121
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.49 E-value=65 Score=24.61 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=25.9
Q ss_pred ccCCCCCCCCCCC-ceeeeecCceeccchhhhh--ccccccccCCCCCCC
Q psy14113 429 FRCCLCNECLDGV-PFTVDVDNKIYCVNDYHRM--FAPKCAACGKGITPV 475 (543)
Q Consensus 429 F~Cs~C~~~L~g~-~f~v~~dGkpYC~~CY~k~--f~pkC~~C~k~I~~~ 475 (543)
..|..|...+... ......=++.||..|..+. ....|..|+..|.+.
T Consensus 24 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 24 TLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 4455555554422 1111223666777776543 235788888888653
No 122
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.47 E-value=38 Score=25.50 Aligned_cols=45 Identities=16% Similarity=0.403 Sum_probs=30.2
Q ss_pred CccCCCCCCCCCCCceeeeecCceeccchhhhhcc--ccccccCCCCCCC
Q psy14113 428 CFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFA--PKCAACGKGITPV 475 (543)
Q Consensus 428 CF~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f~--pkC~~C~k~I~~~ 475 (543)
-+.|..|...+.. . +..=|+.||..|..+.+. ..|..|+..|...
T Consensus 15 ~~~C~IC~~~~~~--~-~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 15 EEECCICMDGRAD--L-ILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCSSSCCSCCS--E-EETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCeeCCcCccC--c-ccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 3567777666654 2 234578888888876443 6788888888754
No 123
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli}
Probab=21.11 E-value=50 Score=34.86 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=17.5
Q ss_pred cccCccCCCCCCC----------ceeeeCCeee--eccccc
Q psy14113 345 FICCSCGRALRGK----------AFYNVHGRVY--CEEDYL 373 (543)
Q Consensus 345 F~Cs~C~~~L~~~----------~f~~~dG~~y--C~~cY~ 373 (543)
+.|.-|++.|... ....++|.+| |..|-.
T Consensus 401 ~~~~~c~~~l~~~~~~~f~~~~l~~v~r~~~~~~~c~~c~~ 441 (523)
T 3py7_A 401 LDCLWCREPLTEVDAFRCMVKDFHVVIREGCRYGACTICLE 441 (523)
T ss_dssp CEETTTCCBCCHHHHHHHHHTTCCCEEETTEEEECCHHHHH
T ss_pred cEEEecCCcCCHHHHHHHHhcCeEEEEECCeeeeehHHHHH
Confidence 4666777776533 2345777776 666653
No 124
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=21.10 E-value=44 Score=25.31 Aligned_cols=39 Identities=8% Similarity=0.103 Sum_probs=30.6
Q ss_pred CCccCCCCCcCCCCCCcceee-cCCcccCchhhhhhhhccCCCC
Q psy14113 495 CYMCEDCGLQLTDEPDKRCYP-LQGRLMCRACHLSHLSRHHQSP 537 (543)
Q Consensus 495 CF~C~~C~k~L~~~~~~~~~~-~dg~~yC~~C~~~~~~~~~~~~ 537 (543)
.|.|..++..+.+. ... ..|..||+.|-.+++..+..++
T Consensus 3 ~~~CpIs~~~m~dP----V~~~~sG~~yer~~I~~~l~~~~~cP 42 (61)
T 2bay_A 3 HMLCAISGKVPRRP----VLSPKSRTIFEKSLLEQYVKDTGNDP 42 (61)
T ss_dssp -CCCTTTCSCCSSE----EEETTTTEEEEHHHHHHHHHHHSBCT
T ss_pred eEEecCCCCCCCCC----EEeCCCCcEEcHHHHHHHHHhCCCCc
Confidence 38899999998874 455 6899999999999998765443
No 125
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=20.63 E-value=48 Score=26.88 Aligned_cols=44 Identities=20% Similarity=0.527 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCCceeeeecCceeccchhhhhc--cccccccCCCCC
Q psy14113 429 FRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMF--APKCAACGKGIT 473 (543)
Q Consensus 429 F~Cs~C~~~L~g~~f~v~~dGkpYC~~CY~k~f--~pkC~~C~k~I~ 473 (543)
+.|..|...+..-.. +..=|+.||..|..+.+ ...|..|+..+.
T Consensus 23 ~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 23 LRCGICFEYFNIAMI-IPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp TBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCcccCChhhCCcCE-ECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
No 126
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.35 E-value=67 Score=24.36 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=16.8
Q ss_pred CccCCCCCcCCCCCCcceeecCCcccCchhhhhhhhc
Q psy14113 496 YMCEDCGLQLTDEPDKRCYPLQGRLMCRACHLSHLSR 532 (543)
Q Consensus 496 F~C~~C~k~L~~~~~~~~~~~dg~~yC~~C~~~~~~~ 532 (543)
+.|..|...+.+. .....=|+.||..|..+++..
T Consensus 16 ~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~ 49 (72)
T 2djb_A 16 ILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYY 49 (72)
T ss_dssp GSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHH
T ss_pred CCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHc
Confidence 4555555555442 111134666666666655544
No 127
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.22 E-value=52 Score=25.56 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=10.6
Q ss_pred CCCcccCCCC--------ccCCCCCcCC
Q psy14113 487 MDKDFHVDCY--------MCEDCGLQLT 506 (543)
Q Consensus 487 ~dk~yH~~CF--------~C~~C~k~L~ 506 (543)
=++.||..|+ .|..|...+.
T Consensus 33 CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 33 CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3555555553 3666665554
Done!