RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14113
(543 letters)
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 128 bits (324), Expect = 7e-35
Identities = 41/178 (23%), Positives = 63/178 (35%), Gaps = 26/178 (14%)
Query: 319 CHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQ 378
C C + V + Q G+ +H +CF+C C + L +YC+ Y
Sbjct: 10 CGVCQKAVYF-AEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGP 68
Query: 379 QTAEKCAICGHLIMEM-----------------------YSGFQQTAEKCAICGHLIMEM 415
+ K G L + + ++ C CG +
Sbjct: 69 KGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAA 128
Query: 416 -ILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAACGKGI 472
+ GKS+H CFRC C + L+ D D +IYC Y + F PK G+G
Sbjct: 129 EKVIGAGKSWHKSCFRCAKCGKSLESTTLA-DKDGEIYCKGCYAKNFGPKGFGFGQGA 185
Score = 68.1 bits (166), Expect = 2e-13
Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 21/134 (15%)
Query: 380 TAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLD 439
+KC +C + +Q G S+H CF C +C + LD
Sbjct: 6 GGKKCGVCQKAVYFAE--------------------EVQCEGSSFHKSCFLCMVCKKNLD 45
Query: 440 GVPFTVDVDNKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCE 499
++IYC + Y + + PK G G + + + ++
Sbjct: 46 STTV-AVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPN 104
Query: 500 DCGLQLTDEPDKRC 513
+ C
Sbjct: 105 ASRMAQKVGGSDGC 118
Score = 51.2 bits (122), Expect = 1e-07
Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 9/76 (11%)
Query: 462 APKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLM 521
KC C K + E V FH C++C C L +
Sbjct: 7 GKKCGVCQKAVYFAE------EVQCEGSSFHKSCFLCMVCKKNLDSTT---VAVHGDEIY 57
Query: 522 CRACHLSHLSRHHQSP 537
C++C+ +
Sbjct: 58 CKSCYGKKYGPKGKGK 73
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 126 bits (318), Expect = 3e-34
Identities = 36/188 (19%), Positives = 64/188 (34%), Gaps = 33/188 (17%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGF 377
+C C + + +A+ +H+ C C C L + ++ VYC++D+ F
Sbjct: 8 MCAGCDQHILD-RFILKALDRHWHSKCLKCSDCHVPLAER-CFSRGESVYCKDDF----F 61
Query: 378 QQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNEC 437
++ KCA C I +++ +A YH CF C +C
Sbjct: 62 KRFGTKCAACQLGIP-------------------PTQVVRRAQDFVYHLHCFACVVCKRQ 102
Query: 438 L-DGVPFTVDVDNKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCY 496
L G F + D+++ C DY G +V+ + H
Sbjct: 103 LATGDEFYLMEDSRLVCKADYETAKQGGSGGSGGSGGGTP-------MVAASPERHDGGL 155
Query: 497 MCEDCGLQ 504
+Q
Sbjct: 156 QANPVEVQ 163
Score = 112 bits (281), Expect = 3e-29
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 404 KCAICGHLIME-MILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFA 462
CA C I++ IL+A+ + +H C +C C+ L F+ +YC +D+ + F
Sbjct: 8 MCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRG--ESVYCKDDFFKRFG 65
Query: 463 PKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLMC 522
KCAAC GI P T+ R D +H+ C+ C C QL D+ RL+C
Sbjct: 66 TKCAACQLGIPP---TQVVRRA--QDFVYHLHCFACVVCKRQLATG-DEFYLMEDSRLVC 119
Query: 523 RACH 526
+A +
Sbjct: 120 KADY 123
Score = 44.4 bits (105), Expect = 2e-05
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 463 PKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLMC 522
P CA C + I + + ++D+ +H C C DC + L + C+ + C
Sbjct: 7 PMCAGCDQHIL------DRFILKALDRHWHSKCLKCSDCHVPLAER----CFSRGESVYC 56
Query: 523 RACH 526
+
Sbjct: 57 KDDF 60
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 114 bits (287), Expect = 2e-30
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 12/131 (9%)
Query: 404 KCAICGHLIME-MILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFA 462
+CA C LI QA +++H F C C+ L G + + V++K C Y + A
Sbjct: 5 RCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVM-VNDKPVCKPCYVKNHA 63
Query: 463 PKCAACGKGITPVEGTEETVRVVSMDKDFH--VDCYMCEDCGLQLTDEPDKRCYPLQGRL 520
C C I P E RV + +H +C++C C L ++ P++G +
Sbjct: 64 VVCQGCHNAIDP-----EVQRVTYNNFSWHASTECFLCSCCSKCLI---GQKFMPVEGMV 115
Query: 521 MCRACHLSHLS 531
C +S
Sbjct: 116 FCSVECKKRMS 126
Score = 113 bits (284), Expect = 4e-30
Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 27/146 (18%)
Query: 319 CHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQ 378
C C E + + QA +H F C C L G+ + V+ + C+ Y +
Sbjct: 6 CAGCDELIFS-NEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCY----VK 60
Query: 379 QTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPG--CFRCCLCNE 436
A C C + I + S+H CF C C++
Sbjct: 61 NHAVVCQGCHNAIDPEV-------------------QRVTYNNFSWHASTECFLCSCCSK 101
Query: 437 CLDGVPFTVDVDNKIYCVNDYHRMFA 462
CL G F V+ ++C + + +
Sbjct: 102 CLIGQKFMP-VEGMVFCSVECKKRMS 126
Score = 58.2 bits (141), Expect = 1e-10
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTN--CFICCSCGRALRGKAFYNVHGRVYCEEDY 372
+C C + Q +H + CF+C C + L G+ F V G V+C +
Sbjct: 65 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVEC 121
Score = 46.6 bits (111), Expect = 1e-06
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 463 PKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLMC 522
P+CA C + I E T+ + ++++H+ + C DC L E + + +C
Sbjct: 4 PRCAGCDELIFSNEYTQ------AENQNWHLKHFCCFDCDSILAGE---IYVMVNDKPVC 54
Query: 523 RACHLSH 529
+ C++ +
Sbjct: 55 KPCYVKN 61
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 115 bits (290), Expect = 3e-30
Identities = 40/184 (21%), Positives = 64/184 (34%), Gaps = 32/184 (17%)
Query: 343 NCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTA 402
+ + G CA C I++ +
Sbjct: 26 RLITRLENTQFDAANGIDDEGGSGGHMGSG----GTPEIPMCAGCDQHILDRF------- 74
Query: 403 EKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFA 462
IL+A+ + +H C +C C+ L F+ +YC +D+ + F
Sbjct: 75 -------------ILKALDRHWHSKCLKCSDCHVPLAERCFSRG--ESVYCKDDFFKRFG 119
Query: 463 PKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLMC 522
KCAAC GI P T+ R D +H+ C+ C C QL D+ RL+C
Sbjct: 120 TKCAACQLGIPP---TQVVRRA--QDFVYHLHCFACVVCKRQLA-TGDEFYLMEDSRLVC 173
Query: 523 RACH 526
+A +
Sbjct: 174 KADY 177
Score = 102 bits (255), Expect = 2e-25
Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 26/144 (18%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGF 377
+C C + + +A+ +H+ C C C L + ++ VYC++D+ F
Sbjct: 62 MCAGCDQHILD-RFILKALDRHWHSKCLKCSDCHVPLAER-CFSRGESVYCKDDF----F 115
Query: 378 QQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNEC 437
++ KCA C I +++ +A YH CF C +C
Sbjct: 116 KRFGTKCAACQLGIP-------------------PTQVVRRAQDFVYHLHCFACVVCKRQ 156
Query: 438 L-DGVPFTVDVDNKIYCVNDYHRM 460
L G F + D+++ C DY
Sbjct: 157 LATGDEFYLMEDSRLVCKADYETA 180
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 115 bits (288), Expect = 6e-30
Identities = 36/169 (21%), Positives = 56/169 (33%), Gaps = 24/169 (14%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRAL--RGKAFYNVHGRVYCEEDYLYS 375
C CG K+ AM + +H+ C C SC L G + Y G + C DY+
Sbjct: 7 RCAGCGGKIAD-RFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR- 64
Query: 376 GFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCN 435
+ C+ CG I E++++A G YH CF C C
Sbjct: 65 -LFGNSGACSACGQSIP-------------------ASELVMRAQGNVYHLKCFTCSTCR 104
Query: 436 ECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRV 484
L ++ ++C +D G + + V
Sbjct: 105 NRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGGSGGSGGSGGDVMVV 153
Score = 101 bits (252), Expect = 6e-25
Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 11/141 (7%)
Query: 401 TAEKCAICGHLIM-EMILQAMGKSYHPGCFRCCLCNECLDGVPFT-VDVDNKIYCVNDYH 458
+ ++CA CG I +L AM +H C +C C L + + I C NDY
Sbjct: 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 63
Query: 459 RMF--APKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPL 516
R+F + C+ACG+ I E V +H+ C+ C C +L P R + +
Sbjct: 64 RLFGNSGACSACGQSIPA----SELVMRA-QGNVYHLKCFTCSTCRNRLV--PGDRFHYI 116
Query: 517 QGRLMCRACHLSHLSRHHQSP 537
G L C + L H +
Sbjct: 117 NGSLFCEHDRPTALINGHLNS 137
Score = 50.0 bits (119), Expect = 3e-07
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 460 MFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGR 519
+ +CA CG I + MD +H C C C QL D Y G
Sbjct: 3 LSWKRCAGCGGKIAD----RFLLYA--MDSYWHSRCLKCSSCQAQLGDI-GTSSYTKSGM 55
Query: 520 LMCRACH 526
++CR +
Sbjct: 56 ILCRNDY 62
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 81
Score = 110 bits (276), Expect = 2e-29
Identities = 36/70 (51%), Positives = 51/70 (72%)
Query: 398 FQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDY 457
+ T EKCA C I++ IL+AMGK+YHPGCF C +C+ LDG+PFTVD ++I+C+ D+
Sbjct: 11 YVATLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDF 70
Query: 458 HRMFAPKCAA 467
HR FA ++
Sbjct: 71 HRKFASGPSS 80
Score = 62.4 bits (152), Expect = 2e-12
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 306 MEKQEEEGEYFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFY-NVHG 364
+ C TC + + + +AMG YH CF C C R L G F +
Sbjct: 5 SSGEGCYVATLEKCATCSQPILD--RILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATS 62
Query: 365 RVYCEEDYLYSGFQQTAEKCA 385
+++C ED+ ++ A +
Sbjct: 63 QIHCIEDF----HRKFASGPS 79
Score = 52.8 bits (127), Expect = 3e-09
Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 9/75 (12%)
Query: 452 YCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDK 511
+ KCA C + I + +R M K +H C+ C C L P
Sbjct: 5 SSGEGCYVATLEKCATCSQPIL-----DRILRA--MGKAYHPGCFTCVVCHRGLDGIP-- 55
Query: 512 RCYPLQGRLMCRACH 526
++ C
Sbjct: 56 FTVDATSQIHCIEDF 70
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 111 bits (279), Expect = 2e-29
Identities = 33/147 (22%), Positives = 51/147 (34%), Gaps = 28/147 (19%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALR--GKAFYNVHGRVYCEEDYLYS 375
C C + + +A+ +H +C C CG L G+ Y GR C DYL
Sbjct: 4 TCGGCQQNIGD-RYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL-- 60
Query: 376 GFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLI--MEMILQAMGKSYHPGCFRCCL 433
++ CA C I EM ++ K YH CF+C
Sbjct: 61 -----------------RLFG----QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAA 99
Query: 434 CNECLDGVPFTVDVDNKIYCVNDYHRM 460
C + + +++ I C D +
Sbjct: 100 CQKHFCVGDRYLLINSDIVCEQDIYEW 126
Score = 103 bits (259), Expect = 1e-26
Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 11/130 (8%)
Query: 401 TAEKCAICGHLIME-MILQAMGKSYHPGCFRCCLCNECLDGVPFT-VDVDNKIYCVNDYH 458
+ C C I + L+A+ + +H C C LC L V + C DY
Sbjct: 1 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 60
Query: 459 RMFAPK--CAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPL 516
R+F CA+C K I E T+RV DK +H++C+ C C R +
Sbjct: 61 RLFGQDGLCASCDKRIRA---YEMTMRV--KDKVYHLECFKCAACQKHFC--VGDRYLLI 113
Query: 517 QGRLMCRACH 526
++C
Sbjct: 114 NSDIVCEQDI 123
Score = 61.7 bits (150), Expect = 8e-12
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 317 GICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALR-GKAFYNVHGRVYCEEDY 372
G+C +C +++ + +YH CF C +C + G + ++ + CE+D
Sbjct: 67 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDI 123
Score = 47.4 bits (113), Expect = 8e-07
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 463 PKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLMC 522
C C + I ++ +D+ +H DC C+ CG +L + +R Y GR +C
Sbjct: 3 LTCGGCQQNIGD----RYFLKA--IDQYWHEDCLSCDLCGCRLGEV-GRRLYYKLGRKLC 55
Query: 523 RACHL 527
R +L
Sbjct: 56 RRDYL 60
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 103 bits (258), Expect = 8e-27
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 10/104 (9%)
Query: 402 AEKCAICGHLIM--EMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHR 459
+ C C I + + +H CFRC C L F DNKI C R
Sbjct: 5 SSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVA-KDNKILCNKCTTR 63
Query: 460 MFAPKCAACGKGITPVEGTEETVRVVS-MDKDFHVDCYMCEDCG 502
+PKC C K I + + V +H DC+ G
Sbjct: 64 EDSPKCKGCFKAIVAGD------QNVEYKGTVWHKDCFSGPSSG 101
Score = 92.9 bits (231), Expect = 4e-23
Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 23/117 (19%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGF 377
C C + + + +H CF C C L + F ++ C +
Sbjct: 7 GCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCT----T 62
Query: 378 QQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLC 434
++ + KC C I+ + ++ G +H CF
Sbjct: 63 REDSPKCKGCFKAIVA-------------------GDQNVEYKGTVWHKDCFSGPSS 100
Score = 54.3 bits (131), Expect = 2e-09
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 461 FAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRL 520
+ C C K I ++ V ++ +H C+ C C L +E ++
Sbjct: 4 GSSGCVECRKPIGA-----DSKEVHYKNRFWHDTCFRCAKCLHPLANET---FVAKDNKI 55
Query: 521 MCRACH 526
+C C
Sbjct: 56 LCNKCT 61
Score = 44.3 bits (105), Expect = 5e-06
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 319 CHTCGEKVTGAGQACQAMGNLYHTNCFICCSCG 351
C C + + Q + G ++H +CF S G
Sbjct: 69 CKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 89.7 bits (223), Expect = 3e-22
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 26/104 (25%)
Query: 364 GRVYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKS 423
+D+ + KC C ++E L AM
Sbjct: 2 SSGSSGKDF-------------------------LAMFSPKCGGCNRPVLENYLSAMDTV 36
Query: 424 YHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAA 467
+HP CF C C F ++D + +C YH ++
Sbjct: 37 WHPECFVCGDCFTSFSTGSF-FELDGRPFCELHYHHRRGSGPSS 79
Score = 65.4 bits (160), Expect = 1e-13
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGF 377
C C V AM ++H CF+C C + +F+ + GR +CE Y
Sbjct: 17 KCGGCNRPVLE--NYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHY----H 70
Query: 378 QQTAEKCA 385
+ +
Sbjct: 71 HRRGSGPS 78
Score = 63.1 bits (154), Expect = 8e-13
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 450 KIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEP 509
D+ MF+PKC C + + + +MD +H +C++C DC
Sbjct: 3 SGSSGKDFLAMFSPKCGGCNRPVL-------ENYLSAMDTVWHPECFVCGDCFTSF---S 52
Query: 510 DKRCYPLQGRLMCRACH 526
+ L GR C +
Sbjct: 53 TGSFFELDGRPFCELHY 69
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 89.4 bits (222), Expect = 4e-22
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 317 GICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSG 376
C CGE V G G A+ ++H CF+C +C LRG+ FY V R YCE Y
Sbjct: 6 SGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCY---- 61
Query: 377 FQQTAEKCAICG 388
T E G
Sbjct: 62 -VATLESGPSSG 72
Score = 78.6 bits (194), Expect = 2e-18
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 400 QTAEKCAICGHLIM--EMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDY 457
+ C CG ++ + A+ + +H GCF C C L G F V+ + YC Y
Sbjct: 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYA-VERRAYCEGCY 61
Query: 458 HRMFAPKCAACG 469
+ G
Sbjct: 62 VATLE-SGPSSG 72
Score = 55.5 bits (134), Expect = 3e-10
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 462 APKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLM 521
+ C CG+ + + VV++D+ FHV C++C C QL + Y ++ R
Sbjct: 5 SSGCGGCGEDVVG-----DGAGVVALDRVFHVGCFVCSTCRAQL---RGQHFYAVERRAY 56
Query: 522 CRACHLSHLSR 532
C C+++ L
Sbjct: 57 CEGCYVATLES 67
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 89.4 bits (222), Expect = 5e-22
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 404 KCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAP 463
CA C +I L A+GKS+HP F C C + + F V+ +YC Y + FA
Sbjct: 27 MCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGF-VEEKGALYCELCYEKFFAS 85
Query: 464 KCAA 467
++
Sbjct: 86 GPSS 89
Score = 64.8 bits (158), Expect = 2e-13
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 312 EGEYFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEED 371
G+ +C C + + G A+G +H F C C + F G +YCE
Sbjct: 21 AGKRTPMCAHCNQVIRG--PFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELC 78
Query: 372 YLYSGFQQTAEKCA 385
Y + A +
Sbjct: 79 Y----EKFFASGPS 88
Score = 49.4 bits (118), Expect = 7e-08
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 11/80 (13%)
Query: 448 DNKIYCVNDYHR-MFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLT 506
D + P CA C + I + + K +H + + C C +
Sbjct: 10 DTLVQRAEHIPAGKRTPMCAHCNQVIR-----GPFLVA--LGKSWHPEEFNCAHCKNTMA 62
Query: 507 DEPDKRCYPLQGRLMCRACH 526
+G L C C+
Sbjct: 63 YIG---FVEEKGALYCELCY 79
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 88.6 bits (220), Expect = 6e-22
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 402 AEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMF 461
+ C C I + + +H CF C C + L G FT D+ YC+N + ++
Sbjct: 5 SSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTA-RDDFAYCLNCFCDLY 63
Query: 462 APKCAA 467
A ++
Sbjct: 64 ASGPSS 69
Score = 63.5 bits (155), Expect = 4e-13
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 6/71 (8%)
Query: 315 YFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLY 374
C C + +T +H CF+C +C + L G+ F YC +
Sbjct: 4 GSSGCVQCKKPITT--GGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCF-- 59
Query: 375 SGFQQTAEKCA 385
A +
Sbjct: 60 --CDLYASGPS 68
Score = 45.4 bits (108), Expect = 1e-06
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 461 FAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRL 520
+ C C K IT T V ++ +H +C++C C QL+ +
Sbjct: 4 GSSGCVQCKKPIT-------TGGVTYREQPWHKECFVCTACRKQLSGQR---FTARDDFA 53
Query: 521 MCRACH 526
C C
Sbjct: 54 YCLNCF 59
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 87.9 bits (218), Expect = 2e-21
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 396 SGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVN 455
+G Q C CG I+ +++A K HP CF C CN L + V+ ++YC
Sbjct: 19 AGSAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGY-FFVEGELYCET 77
Query: 456 DYHRMFAPKCAA 467
+ +
Sbjct: 78 HARARTSGPSSG 89
Score = 71.4 bits (175), Expect = 1e-15
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGF 377
+C CG + G +A H CF+C C L+ K ++ V G +YCE
Sbjct: 27 LCDKCGSGIVG--AVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHA----R 80
Query: 378 QQTAEKCA 385
+T+ +
Sbjct: 81 ARTSGPSS 88
Score = 47.5 bits (113), Expect = 3e-07
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 462 APKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLM 521
P C CG GI V+ DK H +C++C DC L L K + ++G L
Sbjct: 25 MPLCDKCGSGIV-----GAVVKA--RDKYRHPECFVCADCNLNLK---QKGYFFVEGELY 74
Query: 522 CRAC 525
C
Sbjct: 75 CETH 78
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 87.0 bits (216), Expect = 2e-21
Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 26/104 (25%)
Query: 364 GRVYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKS 423
Y + A +CA C + + + +
Sbjct: 2 SSGSSGPCY-------------------------ENKFAPRCARCSKTLTQGGVTYRDQP 36
Query: 424 YHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAA 467
+H C C C L G FT D YCV + +FA ++
Sbjct: 37 WHRECLVCTGCQTPLAGQQFTSR-DEDPYCVACFGELFASGPSS 79
Score = 62.7 bits (153), Expect = 1e-12
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGF 377
C C + +T +H C +C C L G+ F + YC +
Sbjct: 17 RCARCSKTLTQ--GGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACF----G 70
Query: 378 QQTAEKCA 385
+ A +
Sbjct: 71 ELFASGPS 78
Score = 62.0 bits (151), Expect = 2e-12
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 449 NKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDE 508
+ Y FAP+CA C K +T V D+ +H +C +C C L +
Sbjct: 2 SSGSSGPCYENKFAPRCARCSKTLTQGG-------VTYRDQPWHRECLVCTGCQTPLAGQ 54
Query: 509 PDKRCYPLQGRLMCRACH 526
+ C AC
Sbjct: 55 ---QFTSRDEDPYCVACF 69
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein
1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 69
Score = 86.7 bits (215), Expect = 3e-21
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 402 AEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMF 461
+ C C I + + +H CF C C++ L G FT V+++ YCV+ Y
Sbjct: 5 SSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTA-VEDQYYCVDCYKNFV 63
Query: 462 APKCA 466
+ +
Sbjct: 64 SGPSS 68
Score = 64.3 bits (157), Expect = 2e-13
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGF 377
C C + +T +H +CF+C +C + L G+ F V + YC + Y
Sbjct: 7 GCVKCNKAITS--GGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCY----K 60
Query: 378 QQTAEKCA 385
+ +
Sbjct: 61 NFVSGPSS 68
Score = 46.2 bits (110), Expect = 5e-07
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 461 FAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRL 520
+ C C K IT + D+ +H DC++C C +L +R ++ +
Sbjct: 4 GSSGCVKCNKAITSGG-------ITYQDQPWHADCFVCVTCSKKLA---GQRFTAVEDQY 53
Query: 521 MCRACHLSHLS 531
C C+ + +S
Sbjct: 54 YCVDCYKNFVS 64
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 85.9 bits (213), Expect = 6e-21
Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
Query: 306 MEKQEEEGEYFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGR 365
+ + C C A + + G LYH CF+C C + FY GR
Sbjct: 1 ISEFMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGR 60
Query: 366 VYCEEDYLYSGFQQTAEKCAI 386
YCE D+ Q C I
Sbjct: 61 KYCEHDF-----QMLFAPCWI 76
Score = 74.4 bits (183), Expect = 7e-17
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 401 TAEKCAICGHLI--MEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYH 458
+ C C E I+ + G+ YH CF C C + F + + YC +D+
Sbjct: 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYE-FEGRKYCEHDFQ 68
Query: 459 RMFAPKCA 466
+FAP C
Sbjct: 69 MLFAP-CW 75
Score = 52.0 bits (125), Expect = 5e-09
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 453 CVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKR 512
+ + + C C G P E V S + +H C++C C Q P+
Sbjct: 2 SEFMANALASATCERCKGGFAPAEKI-----VNSNGELYHEQCFVCAQCFQQF---PEGL 53
Query: 513 CYPLQGRLMCRAC 525
Y +GR C
Sbjct: 54 FYEFEGRKYCEHD 66
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 85.2 bits (211), Expect = 1e-20
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 401 TAEKCAICGHLIMEM-ILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHR 459
KC CG + +Q G+S+H CF C +C + LD D ++YC + Y +
Sbjct: 6 GGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVA-IHDAEVYCKSCYGK 64
Query: 460 MFAPKCAACGKG 471
+ PK G+G
Sbjct: 65 KYGPKGYGYGQG 76
Score = 57.4 bits (139), Expect = 8e-11
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGF 377
C CG V + Q G +H CF+C C + L VYC+ Y
Sbjct: 9 KCGACGRTVY-HAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCY----G 63
Query: 378 QQTAEKCAICG 388
++ K G
Sbjct: 64 KKYGPKGYGYG 74
Score = 51.6 bits (124), Expect = 9e-09
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 462 APKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLM 521
KC ACG+ + E V + FH C++C C L +
Sbjct: 7 GNKCGACGRTVYHAE------EVQCDGRSFHRCCFLCMVCRKNLD---STTVAIHDAEVY 57
Query: 522 CRACH 526
C++C+
Sbjct: 58 CKSCY 62
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 84.4 bits (209), Expect = 2e-20
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 404 KCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAP 463
C CG I+ +++AM S+HP CFRC LC E L + F V + C ++R A
Sbjct: 7 GCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGF-VKNAGRHLCRPCHNREKAS 65
Query: 464 KCAACG 469
+ G
Sbjct: 66 GP-SSG 70
Score = 61.3 bits (149), Expect = 3e-12
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGF 377
CH CGE + G + +AM N +H CF C C L F GR C +
Sbjct: 7 GCHQCGEFIIG--RVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCH----N 60
Query: 378 QQTAEKCAICG 388
++ A + G
Sbjct: 61 REKASGPS-SG 70
Score = 45.5 bits (108), Expect = 9e-07
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 462 APKCAACGKGITPVEGTEETVRVVS-MDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRL 520
+ C CG+ I RV+ M+ +H +C+ C+ C L D GR
Sbjct: 5 SSGCHQCGEFIIG--------RVIKAMNNSWHPECFRCDLCQEVL---ADIGFVKNAGRH 53
Query: 521 MCRACH 526
+CR CH
Sbjct: 54 LCRPCH 59
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK,
IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 84.4 bits (209), Expect = 2e-20
Identities = 20/61 (32%), Positives = 26/61 (42%)
Query: 312 EGEYFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEED 371
+G C C A + + G LYH CF+C C + FY GR YCE D
Sbjct: 7 QGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHD 66
Query: 372 Y 372
+
Sbjct: 67 F 67
Score = 72.0 bits (177), Expect = 4e-16
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 399 QQTAEKCAICGHLI--MEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVND 456
+ C C E I+ + G+ YH CF C C + F + + YC +D
Sbjct: 8 GSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYE-FEGRKYCEHD 66
Query: 457 YHRMFA 462
+ +FA
Sbjct: 67 FQMLFA 72
Score = 54.7 bits (132), Expect = 6e-10
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 456 DYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYP 515
+ + C C G P E V S + +H C++C C Q P+ Y
Sbjct: 5 YFQGSASATCERCKGGFAPAEKI-----VNSNGELYHEQCFVCAQCFQQF---PEGLFYE 56
Query: 516 LQGRLMCRAC 525
+GR C
Sbjct: 57 FEGRKYCEHD 66
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 83.2 bits (206), Expect = 5e-20
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 402 AEKCAICGHLIM--EMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHR 459
+ C C IM ++ G S+H CF C C + + F DN+ +CV Y +
Sbjct: 5 SSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPK-DNQNFCVPCYEK 63
Query: 460 MFAPKCAA 467
A ++
Sbjct: 64 QHASGPSS 71
Score = 65.9 bits (161), Expect = 7e-14
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 319 CHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQ 378
C C + + + + G+ +H CFIC C + + K+F + +C Y +
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCY----EK 63
Query: 379 QTAEKCA 385
Q A +
Sbjct: 64 QHASGPS 70
Score = 52.0 bits (125), Expect = 5e-09
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 8/66 (12%)
Query: 461 FAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRL 520
+ C C K I P + +H C++C C + K P +
Sbjct: 4 GSSGCQECKKTIMPGTRK-----MEYKGSSWHETCFICHRCQQPIG---TKSFIPKDNQN 55
Query: 521 MCRACH 526
C C+
Sbjct: 56 FCVPCY 61
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 82.5 bits (204), Expect = 1e-19
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 5/78 (6%)
Query: 449 NKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDE 508
+ + Y A KCA C IT V + +H C+ C+ C + L
Sbjct: 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSS--VVAYEGQSWHDYCFHCKKCSVNLA-- 57
Query: 509 PDKRCYPLQGRLMCRACH 526
+KR Q ++ C C
Sbjct: 58 -NKRFVFHQEQVYCPDCA 74
Score = 64.4 bits (157), Expect = 2e-13
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 21/97 (21%)
Query: 364 GRVYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKS 423
+ Y A+KCA C + I G ++ G+S
Sbjct: 2 SSGSSGDCY----KNFVAKKCAGCKNPIT----------------GFGKGSSVVAYEGQS 41
Query: 424 YHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRM 460
+H CF C C+ L F ++YC + ++
Sbjct: 42 WHDYCFHCKKCSVNLANKRFVFH-QEQVYCPDCAKKL 77
Score = 57.1 bits (138), Expect = 9e-11
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 319 CHTCGEKVTGAGQACQ---AMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDY 372
C C +TG G+ G +H CF C C L K F +VYC +
Sbjct: 18 CAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCA 74
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM
domain protein CLP-36, contractIle protein, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 81.7 bits (202), Expect = 2e-19
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 396 SGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVN 455
G Q C CG I+ + ++ + HP C+ C C L V+++IYC
Sbjct: 9 IGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGH-FFVEDQIYCEK 67
Query: 456 DYHRMFAPKCAA 467
+ +
Sbjct: 68 HARERVSGPSSG 79
Score = 74.0 bits (182), Expect = 1e-16
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGF 377
+C CG + G + H C++C CG L+ K + V ++YCE+
Sbjct: 17 MCDKCGTGIVG--VFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHA----R 70
Query: 378 QQTAEKCA 385
++ + +
Sbjct: 71 ERVSGPSS 78
Score = 50.5 bits (121), Expect = 2e-08
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 460 MFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGR 519
P C CG GI V++ D+ H +CY+C DCG L K + ++ +
Sbjct: 13 QKLPMCDKCGTGIV-----GVFVKL--RDRHRHPECYVCTDCGTNLK---QKGHFFVEDQ 62
Query: 520 LMCRACH 526
+ C
Sbjct: 63 IYCEKHA 69
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 83.1 bits (205), Expect = 2e-19
Identities = 26/128 (20%), Positives = 38/128 (29%), Gaps = 23/128 (17%)
Query: 401 TAEKCAICGHLIME-MILQAMGKSYHPGCFRCCLCNECLDGVPFTVDV-DNKIYCVNDYH 458
+ ++CA CG I + +L AM +H C +C C L + + I C NDY
Sbjct: 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 63
Query: 459 RMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQG 518
R+F A G G
Sbjct: 64 RLFGNSGAGGSGGH-------------------MGSGGDVMVVGEPTL--MGGEFGDEDE 102
Query: 519 RLMCRACH 526
RL+ R +
Sbjct: 103 RLITRLEN 110
Score = 56.1 bits (135), Expect = 7e-10
Identities = 25/125 (20%), Positives = 33/125 (26%), Gaps = 18/125 (14%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRAL--RGKAFYNVHGRVYCEEDYLYS 375
C CG K+ AM + +H+ C C SC L G + Y G + C DY
Sbjct: 7 RCAGCGGKIAD-RFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDY--- 62
Query: 376 GFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCN 435
+ A M E + G L N
Sbjct: 63 -IRLFGNSGAGGSGGHMGSGGDVMVVGEPTLMGGEFGD-----------EDERLITRLEN 110
Query: 436 ECLDG 440
D
Sbjct: 111 TQFDA 115
Score = 46.1 bits (109), Expect = 2e-06
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 460 MFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGR 519
+ +CA CG I + + +MD +H C C C QL D Y G
Sbjct: 3 LSWKRCAGCGGKIA------DRFLLYAMDSYWHSRCLKCSSCQAQLGDIGT-SSYTKSGM 55
Query: 520 LMCRACH 526
++CR +
Sbjct: 56 ILCRNDY 62
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 81.3 bits (201), Expect = 2e-19
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 402 AEKCAICGHLIM--EMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHR 459
+ C+ CG +M L+ G+++H CF C C + L F V YCV Y
Sbjct: 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSF-VPDKGAHYCVPCYEN 63
Query: 460 MFAPKCAA 467
FA ++
Sbjct: 64 KFASGPSS 71
Score = 67.4 bits (165), Expect = 2e-14
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 319 CHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQ 378
C CGE V + + G +H +CF+C C + L ++F G YC Y
Sbjct: 8 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCY----EN 63
Query: 379 QTAEKCA 385
+ A +
Sbjct: 64 KFASGPS 70
Score = 51.2 bits (123), Expect = 1e-08
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 461 FAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRL 520
+ C+ACG+ + P ++ + +H C++C C L + P +G
Sbjct: 4 GSSGCSACGETVMPGSR-----KLEYGGQTWHEHCFLCSGCEQPLG---SRSFVPDKGAH 55
Query: 521 MCRACH 526
C C+
Sbjct: 56 YCVPCY 61
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 80.1 bits (198), Expect = 8e-19
Identities = 16/104 (15%), Positives = 30/104 (28%), Gaps = 24/104 (23%)
Query: 364 GRVYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKS 423
+ ++ + KC C I+ + ++ G
Sbjct: 2 SSGSSGKCT----TREDSPKCKGCFKAIVAG-------------------DQNVEYKGTV 38
Query: 424 YHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAA 467
+H CF C C + + F YCV + FA ++
Sbjct: 39 WHKDCFTCSNCKQVIGTGSF-FPKGEDFYCVTCHETKFASGPSS 81
Score = 67.0 bits (164), Expect = 3e-14
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 8/78 (10%)
Query: 449 NKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDE 508
+ R +PKC C K I + V +H DC+ C +C +
Sbjct: 2 SSGSSGKCTTREDSPKCKGCFKAIVAGD-----QNVEYKGTVWHKDCFTCSNCKQVI--- 53
Query: 509 PDKRCYPLQGRLMCRACH 526
+P C CH
Sbjct: 54 GTGSFFPKGEDFYCVTCH 71
Score = 62.4 bits (152), Expect = 1e-12
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGF 377
C C + + Q + G ++H +CF C +C + + +F+ YC +
Sbjct: 17 KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHE---- 72
Query: 378 QQTAEKCA 385
+ A +
Sbjct: 73 TKFASGPS 80
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 79.8 bits (197), Expect = 1e-18
Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 26/105 (24%)
Query: 364 GRVYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKS 423
+DY + + E C C L+ + A
Sbjct: 2 SSGSSGKDY-------------------------WGKFGEFCHGCSLLMTGPFMVAGEFK 36
Query: 424 YHPGCFRCCLCNECL-DGVPFTVDVDNKIYCVNDYHRMFAPKCAA 467
YHP CF C C + DG + + +YC ++ + + +
Sbjct: 37 YHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSSG 81
Score = 74.1 bits (182), Expect = 9e-17
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 449 NKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDE 508
+ DY F C C +T +V+ + +H +C+ C C + + D
Sbjct: 2 SSGSSGKDYWGKFGEFCHGCSLLMTGPF-------MVAGEFKYHPECFACMSCKVIIEDG 54
Query: 509 PDKRCYPLQGRLMCRACH 526
D L C CH
Sbjct: 55 -DAYALVQHATLYCGKCH 71
Score = 49.4 bits (118), Expect = 4e-08
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALR-GKAFYNVHG-RVYCEEDY 372
CH C +TG A YH CF C SC + G A+ V +YC + +
Sbjct: 17 FCHGCSLLMTG--PFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCH 71
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 78.9 bits (195), Expect = 1e-18
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 404 KCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAP 463
C C I ++ AMGK +H F C C + G YC Y+++F
Sbjct: 7 ICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYER-KGLAYCETHYNQLFGD 65
Score = 63.8 bits (156), Expect = 3e-13
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDY 372
IC C + G + AMG +H F+C C + G Y G YCE Y
Sbjct: 7 ICGACRRPIEG--RVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHY 59
Score = 48.4 bits (116), Expect = 7e-08
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 460 MFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGR 519
M P C AC + I V +M K +HV+ ++C C R Y +G
Sbjct: 3 MGVPICGACRRPIE-----GRVV--NAMGKQWHVEHFVCAKCEKPFLGH---RHYERKGL 52
Query: 520 LMCRACH 526
C +
Sbjct: 53 AYCETHY 59
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 76.8 bits (189), Expect = 1e-17
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 402 AEKCAICGHLIM--EMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHR 459
A CA C LI L + +H GCFRCC C L PFT D+++ C + Y
Sbjct: 15 ANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTC-QDSELLCNDCYCS 73
Query: 460 MFAPKCAA 467
F+ ++
Sbjct: 74 AFSSGPSS 81
Score = 67.1 bits (164), Expect = 3e-14
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 449 NKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDE 508
+ Y FA CA C + I ++ + D+ FH C+ C C L DE
Sbjct: 2 SSGSSGPCYDNTFANTCAECQQLIGH-----DSRELFYEDRHFHEGCFRCCRCQRSLADE 56
Query: 509 PDKRCYPLQGRLMCRACH 526
P L+C C+
Sbjct: 57 P---FTCQDSELLCNDCY 71
Score = 64.1 bits (156), Expect = 4e-13
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 312 EGEYFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEED 371
+ + C C + + + +H CF CC C R+L + F + C +
Sbjct: 11 DNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDC 70
Query: 372 YLYSGFQQTAEKCA 385
Y + +
Sbjct: 71 Y----CSAFSSGPS 80
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 75.9 bits (187), Expect = 3e-17
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 402 AEKCAICGHLIMEM-ILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRM 460
CA C I L A+ K +H CF+C C+ L G + D YC +DYH
Sbjct: 15 PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYIS--KDGVPYCESDYHAQ 72
Query: 461 FAPKCAA 467
F ++
Sbjct: 73 FGSGPSS 79
Score = 55.5 bits (134), Expect = 4e-10
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 312 EGEYFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEED 371
+ C C E++ GQ+ A+ +H +CF C +C L G+ + + G YCE D
Sbjct: 11 KIRGPSHCAGCKEEIK-HGQSLLALDKQWHVSCFKCQTCSVILTGE-YISKDGVPYCESD 68
Query: 372 YLYSGFQQTAEKCA 385
Y Q +
Sbjct: 69 Y----HAQFGSGPS 78
Score = 47.4 bits (113), Expect = 3e-07
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 10/70 (14%)
Query: 456 DYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYP 515
CA C + I + ++++DK +HV C+ C+ C + LT E
Sbjct: 9 PIKIRGPSHCAGCKEEIKHGQS------LLALDKQWHVSCFKCQTCSVILTGE----YIS 58
Query: 516 LQGRLMCRAC 525
G C +
Sbjct: 59 KDGVPYCESD 68
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 73.2 bits (179), Expect = 6e-16
Identities = 22/109 (20%), Positives = 34/109 (31%), Gaps = 9/109 (8%)
Query: 401 TAEKCAICGHLIME-MILQAMGKSYHPGCFRCCLCNECLDGVPFTVDV-DNKIYCVNDYH 458
+ C C I + L+A+ + +H C C LC L V + + C DY
Sbjct: 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 61
Query: 459 RMFAPKCAACGKGITPVEGTEETVRVVSMDKDF--HVDCYMCEDCGLQL 505
R+ G V G M +F + + Q
Sbjct: 62 RLGGSGGHMGSGGDVMVVG-----EPTLMGGEFGDEDERLITRLENTQF 105
Score = 60.8 bits (147), Expect = 1e-11
Identities = 21/131 (16%), Positives = 32/131 (24%), Gaps = 24/131 (18%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRAL--RGKAFYNVHGRVYCEEDYLYS 375
C C + + +A+ +H +C C CG L G+ Y GR C DY
Sbjct: 5 TCGGCQQNIGD-RYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDY--- 60
Query: 376 GFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCN 435
+ + + G + L N
Sbjct: 61 -LRLGGSGGHMGSG-------------GDVMVVGEPTLM----GGEFGDEDERLITRLEN 102
Query: 436 ECLDGVPFTVD 446
D D
Sbjct: 103 TQFDAANGIDD 113
Score = 45.8 bits (108), Expect = 2e-06
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 463 PKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLMC 522
C C + I + +D+ +H DC C+ CG +L + + Y GR +C
Sbjct: 4 LTCGGCQQNIG-----DRYFLKA-IDQYWHEDCLSCDLCGCRLGEVGRR-LYYKLGRKLC 56
Query: 523 RACHLSHLSRH 533
R +L
Sbjct: 57 RRDYLRLGGSG 67
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 72.4 bits (177), Expect = 1e-15
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 317 GICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALR-GKAFYNVHGRVYCEEDYLY 374
G+C +C +++ + +YH CF C +C + G + ++ + CE+D
Sbjct: 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYE 67
Score = 68.2 bits (166), Expect = 4e-14
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 401 TAEKCAICGHLIM--EMILQAMGKSYHPGCFRCCLCNECL-DGVPFTVDVDNKIYCVNDY 457
CA C I EM ++ K YH CF+C C + G + + +++ I C D
Sbjct: 7 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLL-INSDIVCEQDI 65
Query: 458 HRMFAPKCAACGKGITP 474
+ + G G +
Sbjct: 66 YEWTKINGGSGGSGGSG 82
Score = 62.8 bits (152), Expect = 3e-12
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 457 YHRMFAPK--CAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCY 514
Y R+F CA+C K I E V DK +H++C+ C C + R
Sbjct: 1 YLRLFGQDGLCASCDKRIRA----YEMTMRV-KDKVYHLECFKCAACQKHFS--VGDRYL 53
Query: 515 PLQGRLMCRACHLSHLSRHHQSP 537
+ ++C + S
Sbjct: 54 LINSDIVCEQDIYEWTKINGGSG 76
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 72.1 bits (176), Expect = 2e-15
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 401 TAEKCAICGHLIMEM-ILQAMGKSYHPGCFRCCLCNECLDGVPFTVDV-DNKIYCVNDYH 458
+ ++CA CG I + +L AM +H C +C C L + + I C NDY
Sbjct: 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 119
Query: 459 RMFA 462
R+F
Sbjct: 120 RLFG 123
Score = 53.2 bits (127), Expect = 7e-09
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRAL--RGKAFYNVHGRVYCEEDY 372
C CG K+ AM + +H+ C C SC L G + Y G + C DY
Sbjct: 63 RCAGCGGKIAD-RFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDY 118
Score = 47.8 bits (113), Expect = 6e-07
Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 7/83 (8%)
Query: 444 TVDVDNKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGL 503
+ + +CA CG I + MD +H C C C
Sbjct: 43 SKLGGGGSGGHMGSGGLSWKRCAGCGGKIAD----RFLLYA--MDSYWHSRCLKCSSCQA 96
Query: 504 QLTDEPDKRCYPLQGRLMCRACH 526
QL D Y G ++CR +
Sbjct: 97 QLGDIGTS-SYTKSGMILCRNDY 118
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 69.1 bits (169), Expect = 4e-15
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 402 AEKCAICGHLIMEM----ILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDY 457
+ CA C + I + + + +H CF C C+ L G F + + I C +
Sbjct: 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTE-RDDILCPDCG 63
Query: 458 HRMFAPKCA 466
+ P
Sbjct: 64 KDISGPSSG 72
Score = 61.0 bits (148), Expect = 3e-12
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 315 YFGICHTCGEKVTGAG--QACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDY 372
C C ++G G + +H +CF C C +L G+ F + C +
Sbjct: 4 GSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCG 63
Score = 56.0 bits (135), Expect = 2e-10
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 460 MFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGR 519
+ CA C P+ G T + ++ +H DC+ C+ C L L + +
Sbjct: 3 SGSSGCAGCTN---PISGLGGTKYISFEERQWHNDCFNCKKCSLSLV---GRGFLTERDD 56
Query: 520 LMCRACH 526
++C C
Sbjct: 57 ILCPDCG 63
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 67.0 bits (164), Expect = 3e-14
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 396 SGFQQTAEKCAICGHLIMEM-ILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCV 454
SG A KC C + + ++GK +H C +C C++ L + D K +C
Sbjct: 3 SGSSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHA-EHDGKPFCH 61
Query: 455 ND-YHRMFAPKC 465
Y +F
Sbjct: 62 KPCYATLFGSGP 73
Score = 50.9 bits (122), Expect = 2e-08
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDY 372
C C + V + ++G +H C C C + L G+ +C +
Sbjct: 11 KCPKCDKTVY-FAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPC 64
Score = 46.6 bits (111), Expect = 4e-07
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
Query: 462 APKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLM 521
A KC C K + E +V S+ KD+H C CE C LT G+
Sbjct: 9 ASKCPKCDKTVYFAE------KVSSLGKDWHKFCLKCERCSKTLT---PGGHAEHDGKPF 59
Query: 522 C-RACH 526
C + C+
Sbjct: 60 CHKPCY 65
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM
domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 65.1 bits (159), Expect = 1e-13
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 404 KCAICGHLIMEM-ILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVND-YHRMF 461
KC C + + ++GK +H C +C C + L + + K YC + Y MF
Sbjct: 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHA-EHEGKPYCNHPCYSAMF 60
Query: 462 APKCAACGKGIT 473
PK G +
Sbjct: 61 GPKGFGRGGAES 72
Score = 55.4 bits (134), Expect = 3e-10
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 319 CHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQ 378
C C ++V + ++G +H C C CG+ L G+ YC + F
Sbjct: 3 CPKCDKEVY-FAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF- 60
Query: 379 QTAEKCAICGHLIMEMY 395
K G +
Sbjct: 61 --GPKGFGRGGAESHTF 75
Score = 48.1 bits (115), Expect = 1e-07
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 463 PKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLMC 522
PKC C K + E RV S+ KD+H C CE CG LT +G+ C
Sbjct: 1 PKCPKCDKEVYFAE------RVTSLGKDWHRPCLKCEKCGKTLTSG---GHAEHEGKPYC 51
Query: 523 RACH 526
Sbjct: 52 NHPC 55
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 62.9 bits (153), Expect = 1e-12
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 398 FQQTAEKCAICGHLI--MEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVN 455
E C C + ME +L A + +H CFRC CN L + + +IYC
Sbjct: 11 QAPARETCVECQKTVYPMERLL-ANQQVFHISCFRCSYCNNKLSLGTYA-SLHGRIYCKP 68
Query: 456 DYHRMFAPKCAACG 469
++++F K
Sbjct: 69 HFNQLFKSKGNYDE 82
Score = 52.9 bits (127), Expect = 4e-09
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 319 CHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDY 372
C C + V + A ++H +CF C C L + ++HGR+YC+ +
Sbjct: 18 CVECQKTVY-PMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHF 70
Score = 50.6 bits (121), Expect = 2e-08
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 462 APKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLM 521
C C K + P+E R+++ + FH+ C+ C C +L+ L GR+
Sbjct: 15 RETCVECQKTVYPME------RLLANQQVFHISCFRCSYCNNKLS---LGTYASLHGRIY 65
Query: 522 CRACH 526
C+
Sbjct: 66 CKPHF 70
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 62.5 bits (152), Expect = 1e-12
Identities = 14/65 (21%), Positives = 23/65 (35%)
Query: 398 FQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDY 457
+ +C C I ++ A+GK+YHP CF C +C + C
Sbjct: 11 QRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCS 70
Query: 458 HRMFA 462
+
Sbjct: 71 LPVSV 75
Score = 61.3 bits (149), Expect = 3e-12
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 456 DYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYP 515
DY R++ +C +C + I E V + K +H DC++C C L R
Sbjct: 9 DYQRLYGTRCFSCDQFI-----EGEVVSA--LGKTYHPDCFVCAVCRLPFPP--GDRVTF 59
Query: 516 LQGRLMCRACH 526
MC+ C
Sbjct: 60 NGKECMCQKCS 70
Score = 49.8 bits (119), Expect = 4e-08
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 314 EYFG-ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGR-VYCEED 371
+G C +C + + G + A+G YH +CF+C C +G+ C++
Sbjct: 12 RLYGTRCFSCDQFIEG--EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKC 69
Query: 372 Y 372
Sbjct: 70 S 70
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 62.1 bits (151), Expect = 2e-12
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 405 CAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPK 464
C C +I E L YHP F C C + L + ++YC+ + +M
Sbjct: 18 CQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARE--LKGELYCLPCHDKMGVSG 75
Query: 465 CAA 467
++
Sbjct: 76 PSS 78
Score = 50.6 bits (121), Expect = 2e-08
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 307 EKQEEEGEYFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRV 366
++ G IC C + Q + YH + F C +CG+ L A + G +
Sbjct: 6 SGEKARGLGKYICQKCHAIIDE--QPLIFKNDPYHPDHFNCANCGKELTADAR-ELKGEL 62
Query: 367 YCEEDY 372
YC +
Sbjct: 63 YCLPCH 68
Score = 39.4 bits (92), Expect = 2e-04
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 463 PKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLMC 522
C C I + ++ + +H D + C +CG +LT + L+G L C
Sbjct: 16 YICQKCHAII-------DEQPLIFKNDPYHPDHFNCANCGKELTAD----ARELKGELYC 64
Query: 523 RACH 526
CH
Sbjct: 65 LPCH 68
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN
actin- interacting protein, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 60.3 bits (146), Expect = 7e-12
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 460 MFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGR 519
+ C AC K P+ G + D +H +C+ C C + L K
Sbjct: 3 SGSSGCVACSK---PISGLTGAKFICFQDSQWHSECFNCGKCSVSLV---GKGFLTQNKE 56
Query: 520 LMCRACH 526
+ C+ C
Sbjct: 57 IFCQKCG 63
Score = 59.9 bits (145), Expect = 1e-11
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 5/72 (6%)
Query: 402 AEKCAICGHLIMEM----ILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDY 457
+ C C I + + +H CF C C+ L G F + +I+C
Sbjct: 5 SSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQ-NKEIFCQKCG 63
Query: 458 HRMFAPKCAACG 469
M
Sbjct: 64 SGMDTDISGPSS 75
Score = 58.3 bits (141), Expect = 3e-11
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 313 GEYFG-ICHTCGEKVTGAG--QACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCE 369
G C C + ++G + + +H+ CF C C +L GK F + ++C+
Sbjct: 1 GSSGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQ 60
Query: 370 EDY 372
+
Sbjct: 61 KCG 63
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 52.0 bits (124), Expect = 6e-09
Identities = 13/54 (24%), Positives = 19/54 (35%)
Query: 400 QTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYC 453
+ C C I +L+A K YHP C C C + + I+
Sbjct: 3 SGSSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWH 56
Score = 43.2 bits (101), Expect = 7e-06
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALR-GKAFYNVHGRVYCEE 370
C +C + +TG + +A YH +C +C CG+ G+ Y ++
Sbjct: 7 GCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPA 58
Score = 34.3 bits (78), Expect = 0.008
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 461 FAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRL 520
+ C +C K IT V + + +K +H C +C CG + + Y +
Sbjct: 4 GSSGCDSCEKYIT------GRV-LEAGEKHYHPSCALCVRCGQMFAEGEE--MYLQGSSI 54
Query: 521 MCRAC 525
AC
Sbjct: 55 WHPAC 59
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 48.8 bits (116), Expect = 8e-08
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGK--AFYNVHGRVYCEEDY 372
+C CGE + + G+ +H +CF C +C L + G YC +
Sbjct: 17 LCALCGEHLYVL-ERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHL 72
Score = 48.4 bits (115), Expect = 1e-07
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 398 FQQTAEKCAICGHLI--MEMILQAMGKSYHPGCFRCCLCNECLDGVPFTV-DVDNKIYCV 454
+ CA+CG + +E + G +H CFRC C L + D YC+
Sbjct: 11 EAGAGDLCALCGEHLYVLERL-CVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCL 69
Query: 455 NDYHRMFAP 463
+ +
Sbjct: 70 QHLPQTDSG 78
Score = 43.0 bits (101), Expect = 9e-06
Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 7/65 (10%)
Query: 462 APKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLM 521
CA CG+ + +E R+ FH C+ C C L +P G
Sbjct: 15 GDLCALCGEHLYVLE------RLCVNGHFFHRSCFRCHTCEATLWPG-GYEQHPGDGHFY 67
Query: 522 CRACH 526
C
Sbjct: 68 CLQHL 72
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 45.2 bits (107), Expect = 1e-06
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 402 AEKCAICGHLIM--EMILQAMGKSYH--PGCFRCCLCNECLDGVPFTVDVDNKIYCVNDY 457
A C C + I + S+H CF C C++CL G F V+ ++C +
Sbjct: 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMP-VEGMVFCSVEC 60
Query: 458 HRMFA 462
+ +
Sbjct: 61 KKRMS 65
Score = 43.7 bits (103), Expect = 3e-06
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTN--CFICCSCGRALRGKAFYNVHGRVYC 368
+C C + Q +H + CF+C C + L G+ F V G V+C
Sbjct: 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFC 56
Score = 34.4 bits (79), Expect = 0.006
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 461 FAPKCAACGKGITPVEGTEETVRVVSMDKDFHV--DCYMCEDCGLQLTDEPDKRCYPLQG 518
A C C I P RV + +H +C++C C L ++ P++G
Sbjct: 1 HAVVCQGCHNAIDPEVQ-----RVTYNNFSWHASTECFLCSCCSKCLI---GQKFMPVEG 52
Query: 519 RLMC-RACH 526
+ C C
Sbjct: 53 MVFCSVECK 61
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 42.8 bits (100), Expect = 3e-04
Identities = 44/212 (20%), Positives = 65/212 (30%), Gaps = 18/212 (8%)
Query: 69 YRSNGSAKPGP-VSPSGSSKDSNSPRASVAT-VPSPLYENVDYYNGRNAALTPPYYHQLP 126
S G P SP+ + SP S + SP + + + +P Y P
Sbjct: 1530 PTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1589
Query: 127 HLRSGSHS-SVGSQDSKHSSPRGSYVSNDINAFQFDRKAQPQVPQGLKYIRDYPPYEAPP 185
S S S S +SP S S P Y P Y
Sbjct: 1590 SYSPTSPSYSPTSPSYSPTSPSYSPTS------------PSYSPTSPSYSPTSPSYSPTS 1637
Query: 186 VYENIQELNKPPKPGPQVPVFGGEHRQMAIALTSPPVYSRANTVTSKAVPVKTATSLS-- 243
+ + P P + P YS + S P + TS +
Sbjct: 1638 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYS 1697
Query: 244 -VTPNYQVSSPVDTTPSPSPSPKTPVTPYGKN 274
+P+Y +SP + SP+ SPK + +N
Sbjct: 1698 PTSPSYSPTSPGYSPGSPAYSPKQDEQKHNEN 1729
Score = 33.9 bits (77), Expect = 0.18
Identities = 48/227 (21%), Positives = 69/227 (30%), Gaps = 25/227 (11%)
Query: 73 GSAKPGPVSPSGSSKDSNSPRASVATVP--SPLYEN--VDYYNGRNAALTPPYYHQLPHL 128
+ G V+P + + V SPL ++ D G A Y +
Sbjct: 1463 EDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSP 1522
Query: 129 RSGSHSSVGSQDSKHSSPRGSYVSNDINAFQFDRKAQPQVPQGLKYIRDYPPYEAP-PVY 187
+ S SSP S S + + P Y P Y P Y
Sbjct: 1523 FGAYGEAPTSPGFGVSSPGFSPTSPTYSPT-----SPAYSPTSPSYSPTSPSYSPTSPSY 1577
Query: 188 ENIQELNKP--PKPGPQVPVFGGEHRQMAIALTSPPVYSRANTVTSKAVPVKTATSLSVT 245
P P P P + + P YS + S P + TS S +
Sbjct: 1578 SPTSPSYSPTSPSYSPTSPSYSP----------TSPSYSPTSPSYSPTSPSYSPTSPSYS 1627
Query: 246 PNYQVSSPVDTTPSPSPSPKTPVTP-YGKNLLPYNVTPPR--PMGPT 289
P SP + SP+ +P +P Y Y+ T P P P+
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPS 1674
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 7e-04
Identities = 69/478 (14%), Positives = 119/478 (24%), Gaps = 162/478 (33%)
Query: 122 YHQLPHLRSGSHSSVGSQDSKHSSPRGSYVSNDI-----NAF--QFDRKAQPQVPQGLKY 174
+H H+ G Y DI +AF FD K
Sbjct: 1 HHHHHHM----DFETGEHQ---------YQYKDILSVFEDAFVDNFD----------CKD 37
Query: 175 IRDYPPYEAPPVY--ENIQELNKPPKPGPQVPVFGGEHRQMAIALTSPPVYSRANTVTSK 232
++D P + E I + R L+ V
Sbjct: 38 VQDMPK----SILSKEEIDHIIMSKDAVSGT------LRLFWTLLSKQ-----EEMV--- 79
Query: 233 AVPVKTATSLSVTPNYQ-VSSPVDTTPSPSPSPKTPVTPYGKNLL--------PYNVTPP 283
+ + NY+ + SP+ T PS T + ++ L YNV
Sbjct: 80 ----QKFVEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNV--S 132
Query: 284 RPMGPTEAERKIEELTRQLEEEMEKQEEEGEYFGICH---TCGEKVTGAGQACQAMGNLY 340
R + +L + L + + I G K A C +
Sbjct: 133 RL-------QPYLKLRQAL-----LELRPAKNVLI-DGVLGSG-KTWVALDVCLSYK--- 175
Query: 341 HTNCFICCSCGRALRGKAFY-NVHGRVYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQ 399
C + K F+ N+ E L Q + + I ++
Sbjct: 176 ----VQCK-----MDFKIFWLNL-KNCNSPETVLEM--LQK-----LL-YQIDPNWTSRS 217
Query: 400 QTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDV-DNKIYCVNDYH 458
+ + H I + + + + C L L +V + K +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYE---NCLL---VLL------NVQNAKAW------ 259
Query: 459 RMFAPKC----AACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQL--------- 505
F C K +T T +S+D H + D L
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTH-ISLD---HHSMTLTPDEVKSLLLKYLDCRP 315
Query: 506 TDEPDKRC--YPLQ----GRLM----CRACHLSHL-----------SRHHQSPTDLQD 542
D P + P + + + H+ S + P + +
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.4 bits (86), Expect = 0.004
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 290 EAERKIEELTRQLEEEMEKQEEE 312
+A++ +EE ++ E++EK +
Sbjct: 115 KAKKDLEEWNQRQSEQVEKNKIN 137
Score = 32.4 bits (73), Expect = 0.24
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 290 EAERKIEELTRQLEEEMEKQEEE 312
E K + R ++ +Q +
Sbjct: 129 EQVEKNKINNRIADKAFYQQPDA 151
Score = 32.1 bits (72), Expect = 0.27
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 8/41 (19%)
Query: 282 PPRPMGPTEAERK--------IEELTRQLEEEMEKQEEEGE 314
R E+ RK ++EL + ++ E+ +
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAK 117
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.006
Identities = 48/274 (17%), Positives = 76/274 (27%), Gaps = 80/274 (29%)
Query: 20 AIE-SFL--VEGTSRAP--APPPVDYKQYERGNIIASSKFATPK-SVDNLPLADVY---- 69
AI F V P + PP + N +P S+ NL V
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE----GVPSPMLSISNLTQEQVQDYVN 354
Query: 70 RSNGSAKPGPVSPSGSSKDS----NSPRASVATVPSPLYENVDYYNGRNAALTPPYYHQL 125
++N + N + V + G +L Y
Sbjct: 355 KTNSHLPA-------GKQVEISLVNGAKNLVVS-------------GPPQSL----YGLN 390
Query: 126 PHLRSGSHSSVGSQDSKHSSPRGSYVSND---INA-F--QFDRKAQPQVPQGLKYIRDYP 179
LR S Q S R SN + + F A + + L ++
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV--KNNV 448
Query: 180 PYEAP----PVY-----ENIQELNK--PPKPGPQV---PV-------FGGEHRQMAIALT 218
+ A PVY +++ L+ + + PV F H I
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH----ILDF 504
Query: 219 SPPVYSRANTVTSKA-----VPVKTATSLSVTPN 247
P S +T + V V A +L + P+
Sbjct: 505 GPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Score = 36.2 bits (83), Expect = 0.036
Identities = 44/313 (14%), Positives = 81/313 (25%), Gaps = 92/313 (29%)
Query: 42 QYERGN----IIAS--SKFATPKSVDNLPLADVYRSNGSAKPGPVSPSGSS--KDSNSPR 93
Y GN + A + T + + + AK S S+ +
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 94 ASVATV-----PSPLY--ENVDYYNGRNAALT-PPYYHQL-----PHLRSGSHSSVGSQD 140
A + + + Y E D Y T L L +++ D
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQ------TYHVLVGDLIKFSAETLSELIRTTL---D 204
Query: 141 SKHSSPRGSYVSNDINAFQFDRKAQPQVPQGLKYIRDYPPYEAPPV-------YENI-QE 192
++ +G +I + + P Y+ P P + Y +
Sbjct: 205 AEKVFTQGL----NILEWLENPSNTPDKD----YL-LSIPISCPLIGVIQLAHYVVTAKL 255
Query: 193 LNKPPKPGPQVPVFGGEHRQMAIALTSPPVYSRANTVTSKAVPVKTATSLSVTPN--YQV 250
L P GE R Y + T S+ + A + + + +
Sbjct: 256 LGFTP----------GELRS----------YLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 251 SSPV------------DTTPSPSPSPKTPVTPYGKNLLPYNVTPPRPM----GPTEA--E 292
+ P+ S P + +N N P PM T+ +
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSI-LEDSLEN----NEGVPSPMLSISNLTQEQVQ 350
Query: 293 RKIEELTRQLEEE 305
+ + L
Sbjct: 351 DYVNKTNSHLPAG 363
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 35.5 bits (82), Expect = 0.039
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 4/90 (4%)
Query: 247 NYQVSSPVDTTPSPSPSPKTPVTPYGKNLLPYNVTPPRPMGPTEAERKIEELTRQLEEEM 306
N Q SP P+P+P P+ P PP+ + ++ + ++
Sbjct: 4 NSQGQSPPVPFPAPAPPPQPPTPALPHPPAQPPPPPPQQFPQFHVKSGLQIKKNAIIDDY 63
Query: 307 EKQEEE---GEYFGICHTCGEKVTGAGQAC 333
+ + G G K T A
Sbjct: 64 KVTSQVLGLGI-NGKVLQIFNKRTQEKFAL 92
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 35.3 bits (79), Expect = 0.046
Identities = 31/160 (19%), Positives = 51/160 (31%), Gaps = 8/160 (5%)
Query: 132 SHSSVGSQDSKHSSPRGSYVSNDINAFQFDRKAQPQVPQGLKYIRDYPPYEAPPVYENIQ 191
S SS+G ++ Y ++ +N Q + ++ + + + + +AP +
Sbjct: 334 SGSSIGEKNGMI------YATDTLNFKQGEGGSRWTMYKNSQAGSGWDSSDAPNSWYGAG 387
Query: 192 ELNKPPKPGPQVPVFGGEHRQMAIALTSPPVYSRANTVTSKAVPVKTATSLSVTPNYQVS 251
K P V V + P V + NT K + N
Sbjct: 388 -AIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKV 446
Query: 252 SPVDTTPSPSPS-PKTPVTPYGKNLLPYNVTPPRPMGPTE 290
+ TP P+ P P K L P V P PT
Sbjct: 447 TKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTP 486
Score = 30.2 bits (66), Expect = 2.0
Identities = 21/143 (14%), Positives = 33/143 (23%), Gaps = 6/143 (4%)
Query: 134 SSVGSQDSKHSSPRGSYVSNDINAFQFDRKAQPQVPQGLKYIRDYPPYEAPPVYENIQEL 193
+ + R + N +D P G I+ P V
Sbjct: 348 TDTLNFKQGEGGSRWTMYKNSQAGSGWDSSDAPNSWYGAGAIKMSGPNNYVTVGATSATN 407
Query: 194 NKPPKPGPQVPVFGGEHRQMAIALTS--PPVYSRANTVTSKAVPVK----TATSLSVTPN 247
P P VP + S + + +K P TA +
Sbjct: 408 VMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYET 467
Query: 248 YQVSSPVDTTPSPSPSPKTPVTP 270
+ P P+ P P
Sbjct: 468 EKPLKPAPVAPNYEKEPTPPTRL 490
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 34.3 bits (78), Expect = 0.070
Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 28/105 (26%)
Query: 279 NVTPPRPMGPTEAERKIEELTRQ-----------------LEEEMEKQEEEGEYFGICHT 321
+ + M EAE+ +++ + LE E +E + IC+
Sbjct: 126 DQLKGKKMRKKEAEQVLQKFVQNKWLIEKEGEFTLHGRAILEMEQYIRETYPDAVKICNI 185
Query: 322 CGEKVTGAGQACQAMGNLYHTNCF----------ICCSCGRALRG 356
C + GQ+C+ G H C C C
Sbjct: 186 CHSLLI-QGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229
Score = 30.9 bits (69), Expect = 0.99
Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 31/98 (31%)
Query: 354 LRGKAFYNVHGRVYCE-EDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLI 412
+ + + +HGR E E Y+ + + C IC L+++ + C CG
Sbjct: 152 IEKEGEFTLHGRAILEMEQYIRETYPDAVKICNICHSLLIQ--------GQSCETCGI-- 201
Query: 413 MEMILQAMGKSYHPGCFR----------CCLCNECLDG 440
H C C CN+
Sbjct: 202 ----------RMHLPCVAKYFQSNAEPRCPHCNDYWPH 229
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 35.1 bits (80), Expect = 0.076
Identities = 47/207 (22%), Positives = 66/207 (31%), Gaps = 20/207 (9%)
Query: 69 YRSNGSAKPGPVSPSGSSKDSNSPRASVATVPSPLYENVDYYNGRNAALTPPYYHQLPHL 128
S P SP S+ + P + + SP Y + + +P Y P
Sbjct: 1550 GYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPT---SPSYSPTSPSYSPTSPSY 1606
Query: 129 RSGS-HSSVGSQDSKHSSPRGSYVSNDINAFQFDRKAQPQVPQGLKYIRDYPPYE-APPV 186
+ S S S +SP S S + + P Y P Y P
Sbjct: 1607 SATSPSYSPTSPSYSPTSPSYSPTSP-----SYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1661
Query: 187 YENIQELNKPPKPGPQVPVFGGEHRQMAIALTSP------PVYSRANTVTSKAVPVKTAT 240
Y P P + + TSP P YS + S P + T
Sbjct: 1662 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1721
Query: 241 SLSVTPNYQVSSPVDTTPSPSPSPKTP 267
S P+Y +SP + SPS SP +P
Sbjct: 1722 S----PSYSPTSPSYSPTSPSYSPTSP 1744
Score = 33.9 bits (77), Expect = 0.16
Identities = 45/219 (20%), Positives = 61/219 (27%), Gaps = 50/219 (22%)
Query: 51 SSKFATPKSVDNLPLADVYRSNGSAKPGPVSPSGSSKDSNSPRASVATVP-SPLYENVDY 109
+S +P S P + Y S S SPS S + S + P SP Y
Sbjct: 1581 TSPSYSPTSPSYSPTSPSY-SPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSY----- 1634
Query: 110 YNGRNAALTPPYYHQLPHLRSGSHSSVGSQDSKHSSPRGSYVSNDINAFQ-FDRKAQPQV 168
+ T P Y S S S SP S ++ P
Sbjct: 1635 ------SPTSPSY--------SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1680
Query: 169 PQGLKYIRDYPPYEAPPVYENIQELNKPPKPGPQVPVFGGEHRQMAIALTSPPVYSRANT 228
P Y P + P P P + + P YS +
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP----------TSPSYSPTS- 1729
Query: 229 VTSKAVPVKTATSLSVTPNYQVSSPVDTTPSPSPSPKTP 267
P+Y +SP + SPS SP +P
Sbjct: 1730 -----------------PSYSPTSPSYSPTSPSYSPTSP 1751
Score = 31.2 bits (70), Expect = 0.99
Identities = 51/253 (20%), Positives = 74/253 (29%), Gaps = 39/253 (15%)
Query: 43 YERGNIIASSKFATPKSVDNLPLADVYRS--NGSAKPGPVSPSGSSKDSNSPRASVATVP 100
YER ++ S +P + PL G G + + K SP +
Sbjct: 1486 YERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSS 1545
Query: 101 SPLYENVDYYNGRNAALTP--PYYHQLPHLRSGS-----HSSVGSQDSKHSSPRGSYVSN 153
+ Y + + +P P Y P S S S S SP S
Sbjct: 1546 AMSP----GYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSP 1601
Query: 154 DINAFQFDRKAQPQVPQGLKYIRDYPPYE-APPVYENIQELNKPPKPGPQVPVFGGEHRQ 212
++ Y P Y P Y P P P +
Sbjct: 1602 TSPSYS---------ATSPSYSPTSPSYSPTSPSYSPTS-----PSYSPTSPSYSP---- 1643
Query: 213 MAIALTSPPVYSRANTVTSKAVPVKTATSLSVTPNYQVSSPVDTTPSPSPSPKTPVTPYG 272
+ P YS + S P + TS S +P SP + SP+ +P +P
Sbjct: 1644 ------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1697
Query: 273 KNLLP-YNVTPPR 284
P Y+ T P
Sbjct: 1698 SPTSPSYSPTSPS 1710
Score = 30.0 bits (67), Expect = 2.8
Identities = 49/247 (19%), Positives = 67/247 (27%), Gaps = 40/247 (16%)
Query: 54 FATPKSVDNLPLADVYRSNGSAKPGPVSPSGSSKDSNSPRASVATVPSPLYENVDYYNGR 113
TP + + S +A P+ GS + SP Y+ V
Sbjct: 1482 AGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASP-YKGVQSPGYT 1540
Query: 114 NAALTPPYYHQLPHLRSGSHSSVGSQDSKHSSPRGSYVSNDINAFQFDRKAQPQVPQGLK 173
+ + S S SS G S P S P P
Sbjct: 1541 SPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYS-------------PTSPS--- 1584
Query: 174 YIRDYPPYEAPPVYENIQELNKP--PKPGPQVPVFGGEHRQMAIALTSP------PVYSR 225
Y P P Y P P P + + + TSP P YS
Sbjct: 1585 ----YSP--TSPSYSPTSPSYSPTSPSYSATSPSYSP--TSPSYSPTSPSYSPTSPSYSP 1636
Query: 226 ANTVTSKAVPVKTATSLSVTPNYQVSSPVDTTPSPSPSPKTPVTPYGKNLLPYNVTPPRP 285
+ S P + TS P+Y SP + SP+ +P +P P
Sbjct: 1637 TSPSYSPTSPSYSPTS----PSY---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1689
Query: 286 MGPTEAE 292
PT
Sbjct: 1690 YSPTSPS 1696
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer,
transferase, serine/threonine-protein kinase,
nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Length = 373
Score = 34.3 bits (79), Expect = 0.081
Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 7/109 (6%)
Query: 229 VTSKAVPVKTATSLSVTPNYQVSSPVDTTPSPSP-SPKTPVTPYGKNLLPYNVTPPRPMG 287
+ ++ + ++ + + + S + + + PV + L ++ P
Sbjct: 14 LGTENLYFQSMKNSGDQDSRSGHNEAKEVWSNADLTERMPVKSKRTSALAVDIPAPPAPF 73
Query: 288 PTEAERKIEELTRQLEE--EMEKQEEEGE-YFGICHTCGEKVTGAGQAC 333
R + + + K E G FG H C E TG A
Sbjct: 74 D---HRIVTAKQGAVNSFYTVSKTEILGGGRFGQVHKCEETATGLKLAA 119
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform;
transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A
1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A
1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Length = 365
Score = 33.1 bits (76), Expect = 0.19
Identities = 11/100 (11%), Positives = 26/100 (26%), Gaps = 1/100 (1%)
Query: 235 PVKTATSLSVTPNYQVSSPVDTTPSPSPSPKTPVTPYGKNLLPYNVTPPRPMGPTEAERK 294
++ +L+ + PS S + E E
Sbjct: 25 EIRHLPNLNREQRRAFIRSLRDDPSQSANLLAEAKKLNDAQPKGTENLYFQSMGPEDELP 84
Query: 295 IEELTRQLEEEMEKQEEEGE-YFGICHTCGEKVTGAGQAC 333
++ ++ + ++ G + C + TG A
Sbjct: 85 DWAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAV 124
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA
binding motif, transcriptional regulator, bacter
antitoxin, Zn binding protein, transcription
regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB:
3gn5_A* 3gn5_B* 2kz8_A
Length = 133
Score = 31.7 bits (71), Expect = 0.24
Identities = 7/71 (9%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 464 KCAACGKGITPVEGTEETVRVVSMDKDFH-VDCYMCEDCGLQLTDEPDKRCYPLQGRLMC 522
KC C +G + + C C + ++ + + Q +
Sbjct: 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKEESDAFMAQVKAFR 63
Query: 523 RACHLSHLSRH 533
+ + ++
Sbjct: 64 ASVNAETVAPE 74
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus
scrofa} SCOP: g.39.1.4
Length = 31
Score = 28.5 bits (63), Expect = 0.41
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 463 PKCAACGKGITPVEGTEETVRVVSMDKDFHVDCY 496
P CA CGK + P E +V +DK +H C+
Sbjct: 4 PNCARCGKIVYPTE------KVNCLDKFWHKACF 31
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Length = 437
Score = 32.1 bits (72), Expect = 0.44
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 253 PVDTTPSPS--PSPKTPVTPYGKNLLPYNVTPPRPMGPTEAERKIEELTRQLEEEMEKQE 310
P++ P P + PY + PP T ER + ++E ++ E
Sbjct: 24 PLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVE 83
Query: 311 EEGE 314
E +
Sbjct: 84 TELK 87
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 31.0 bits (69), Expect = 0.63
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 9/99 (9%)
Query: 295 IEELTRQLEEEMEKQE--EEGEYFG--ICHTCG-EKVTGAGQACQAMGNLYHTNCFICCS 349
+ EL R E+E + G+ + IC+ C K T + Q T C
Sbjct: 50 LNELKRVDFSELEAIDIYRTGKGYDKKICNICHILKNTDGFEINQTDAKGRKTTRPSCRE 109
Query: 350 CGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCAICG 388
C + + G + + D + + + C IC
Sbjct: 110 CRKNIDG---VKLSSTEKKKMDEIAP-PKGSVFTCPICE 144
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 29.9 bits (67), Expect = 0.85
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 290 EAERKIEELTRQLEEEMEKQEE 311
+ E K++E+ ++LE+E E E
Sbjct: 80 QLEAKVKEMNKRLEDEEEMNAE 101
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix
bundle, rubre like, electron transport; 1.63A
{Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB:
1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A
1ryt_A
Length = 191
Score = 30.5 bits (68), Expect = 0.94
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 346 ICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKC 405
+ S A + +E ++ Q T +C CG++ + G E C
Sbjct: 120 VFASIAVAEEFHEKRFLDFARNIKEGRVFLREQATKWRCRNCGYV----HEG-TGAPELC 174
Query: 406 AICGH 410
C H
Sbjct: 175 PACAH 179
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 30.6 bits (69), Expect = 1.7
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 8/93 (8%)
Query: 249 QVSSPVDTTPSPSPSPKTPVTPYGKNLLPYNVTPPRPMGPTEAE-------RKIEELTRQ 301
+ ++PV + ++ T + + +E
Sbjct: 95 EPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVSSNYDNYVFDIWKQYYPQPVEIKHDH 154
Query: 302 LEEEMEKQEEEGE-YFGICHTCGEKVTGAGQAC 333
+ + + EE G FG+ H E+ TG A
Sbjct: 155 VLDHYDIHEELGTGAFGVVHRVTERATGNNFAA 187
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.5 bits (69), Expect = 1.9
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 292 ERKIEELTRQLEEEMEKQEEEGE 314
E KI +L R+++E+ ++ + E
Sbjct: 927 ENKIMQLQRKIDEQNKEYKSLLE 949
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 30.1 bits (67), Expect = 1.9
Identities = 21/145 (14%), Positives = 41/145 (28%), Gaps = 13/145 (8%)
Query: 122 YHQLPHLRSGSHSSVGSQDSKHSSPRGSYVSNDINAFQFDRKAQPQVPQGLKYIRDYPPY 181
+H H+ +S +SP G A P + L P
Sbjct: 3 HHHHHHVDDDDKMFSTQVNSSLTSPTGRGSM-----------AAPSLHPSLGPGIGSPGQ 51
Query: 182 EAPPVYENIQELNKPPKPGPQVPVFGGEHRQMAIALTSPPVYSRANTVTSKAVPVKTATS 241
P+ +N P + G H T+P + + + ++S
Sbjct: 52 LHSPISTLSSPINGMGPPFSVISSPMGPHSMS--VPTTPTLGFSTGSPQLSSPMNPVSSS 109
Query: 242 LSVTPNYQVSSPVDTTPSPSPSPKT 266
+ P ++ + PS + +
Sbjct: 110 EDIKPPLGLNGVLKVPAHPSGNMAS 134
>3gaa_A Uncharacterized protein TA1441; the protein with unknown function
from thermoplasma acidophi structural genomics,PSI,
MCSG; 2.70A {Thermoplasma acidophilum}
Length = 252
Score = 29.8 bits (66), Expect = 2.3
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 290 EAERKIEELTRQLEEEMEKQEEEGEYFG 317
+ +I+++ Q +E EKQ+E +G
Sbjct: 225 ALDEQIKKIEEQYKELQEKQKEPQSMYG 252
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.2 bits (65), Expect = 2.3
Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 24/65 (36%)
Query: 443 FTVDVDNKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCG 502
+++ + C P+C I + V C CG
Sbjct: 14 RGPNLNIVLTC---------PECKVYPPKIVERFSEGDVV---------------CALCG 49
Query: 503 LQLTD 507
L L+D
Sbjct: 50 LVLSD 54
Score = 28.9 bits (64), Expect = 3.2
Identities = 7/58 (12%), Positives = 17/58 (29%), Gaps = 14/58 (24%)
Query: 298 LTRQ-LEEEMEKQEEEGEYFGICHTCGEKVTGAGQACQAMGNL---YHTNCFICCSCG 351
+TR+ +++ ++ C C + + +C CG
Sbjct: 2 MTRESIDKRAGRRGPNLNIVLTCPECKVYPP----------KIVERFSEGDVVCALCG 49
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 29.3 bits (65), Expect = 2.5
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 362 VHGRVYCEEDYLYSGFQQTAE-KCAICGHLIMEMYSGFQQTAEKCAICGH 410
VH Y C ICG++ + G + EKC IC
Sbjct: 151 VHAERYLAAYNDIDAPDDDKFHLCPICGYI----HKG--EDFEKCPICFR 194
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics,
PSI-2, protein ST initiative; NMR {Agrobacterium
tumefaciens str}
Length = 112
Score = 28.2 bits (63), Expect = 2.6
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 15/55 (27%)
Query: 284 RPMGPTEAERKIEELTRQLEEEMEKQE--------------EEGEYFGICHTCGE 324
P P + +R E ++ +E+ + G + G C CG+
Sbjct: 36 EPRNPDDEDRASERSNDEVLDELGQVGQDELRAIDAALARIASGTF-GTCVKCGK 89
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural
genomics, protein structure initiative; 2.60A
{Clostridium phytofermentans isdg}
Length = 141
Score = 28.3 bits (64), Expect = 3.0
Identities = 6/31 (19%), Positives = 17/31 (54%)
Query: 285 PMGPTEAERKIEELTRQLEEEMEKQEEEGEY 315
P+ P+E +++ + + + +Q+ EG +
Sbjct: 107 PIDPSEIMDALKQSIQTVLQHQAQQDSEGHH 137
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural
GENO protein structure initiative, midwest center for
structural genomics; HET: MLY MSE MLZ ADP; 1.66A
{Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Length = 302
Score = 28.8 bits (64), Expect = 4.3
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 10/85 (11%)
Query: 44 ERGNIIASSKFATPKSVDNLPLADVYRSN------GSAKPGPVSPSGSSKDSNSPRASVA 97
E G II +F T + + Y S G GPV +S+ ++
Sbjct: 22 EDGTIIDRIEFPTXMPDETIEXVIQYFSQFSLQAIGIGSFGPVDNDXTSQT----YGTIT 77
Query: 98 TVPSPLYENVDYYNGRNAALTPPYY 122
P + + + + P
Sbjct: 78 ATPXAGWRHYPFLQTVXNEMXIPVG 102
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus
musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB:
1kdh_A* 1kej_A*
Length = 381
Score = 28.8 bits (63), Expect = 4.5
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 5/64 (7%)
Query: 255 DTTPSPSPSPKTPVTPYGKNLLPYNVTPPRPMGPTEAERKIEELTRQLEEEMEKQEEEGE 314
+++PSP P + P K + Y + + T L+ E E
Sbjct: 1 NSSPSPVPGSQNVPAPAVKKISQYACQRRTTLNNYN-----QLFTDALDILAENDELREN 55
Query: 315 YFGI 318
Sbjct: 56 EGSC 59
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress,
oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A
3pza_A 3qvd_A 1nnq_A 2hr5_A
Length = 170
Score = 28.1 bits (62), Expect = 4.7
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 6/28 (21%)
Query: 383 KCAICGHLIMEMYSGFQQTAEKCAICGH 410
C ICG+ ++ E C +CG
Sbjct: 140 ICPICGYTAVDE------APEYCPVCGA 161
>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme,
[4Fe-4S], snirr, six-electron REDU phosphate complex;
HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1
d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A*
3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A*
7gep_A* 8gep_A*
Length = 497
Score = 28.8 bits (65), Expect = 5.1
Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 31/83 (37%)
Query: 289 TEAERKIEELTRQLEEEMEKQEEEGEYFGICHTCGEKVTGAGQACQAMGNLYHTNCFICC 348
EAER + ++ M K E+ + +VTG C N
Sbjct: 372 AEAERFLPSFIDNIDNLMAKHGVSDEHIVM------RVTG----C--------PN----- 408
Query: 349 SCGR------ALRGKA--FYNVH 363
CGR L GKA YN+H
Sbjct: 409 GCGRAMLAEVGLVGKAPGRYNLH 431
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM
glucanase, carbohydrate metabolism, cellulose
degradation, glycosidase; HET: BTB; 2.10A {Clostridium
cellulovorans}
Length = 515
Score = 28.7 bits (63), Expect = 5.8
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 251 SSPVDTTPSPSPSPKTPVTPYGK 273
++ P P+P T G
Sbjct: 488 KGELEGKPIPNPLLGLDSTRTGH 510
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 28.2 bits (63), Expect = 7.1
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 186 VYEN-IQELNKPPKPGPQVPVFGGEHRQMAIALTSP 220
V++ + + KPG V V+ + + +P
Sbjct: 21 VFKKGVVRVEGDIKPGDIVEVYTRGGKFLGKGFANP 56
>3hag_A Capsid protein; jelly-roll beta sheets, beta barrel, icosahedral
virus; 3.50A {Hepatitis e virus type 4} PDB: 2zzq_A
2ztn_A
Length = 504
Score = 28.3 bits (62), Expect = 7.6
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 10/104 (9%)
Query: 196 PPKPGPQVPVFGGE--HRQMAIALTSPPVY----SRANTVTSKAVPVKTATSLS---VTP 246
P + GG+ + + ++ P S N K + + L V
Sbjct: 271 GGLPTELISSAGGQLFYSRPVVSANGEPTVKLYTSVENAQQDKGIAIPHDIDLGESRVVI 330
Query: 247 NYQVSSPVDTTPSPSPSPKTPVTPYGKN-LLPYNVTPPRPMGPT 289
+ P+PSP+P P + N +L ++T T
Sbjct: 331 QDYDNQHEQDRPTPSPAPSRPFSVLRANDVLWLSLTAAEYDQTT 374
>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue
copper protein, oxidoreductase, electron transport; HET:
TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1
PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*
Length = 147
Score = 27.2 bits (60), Expect = 8.7
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 7/76 (9%)
Query: 301 QLEEEMEKQEEEGEYFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFY 360
++ ME+ + T + LY C C G GK
Sbjct: 14 NFDDAMEEGRDTEAVKHFLETGENVYNEDPEILPEAEELYAGMCSGC--HGHYAEGKIGP 71
Query: 361 NVHGRVYCEEDYLYSG 376
++ + Y G
Sbjct: 72 GLND-----AYWTYPG 82
>1rwj_A Cytochrome C family protein; multiheme cytochrome C, geobacter
metallireducens, heme coordination in C-type
cytochromes; HET: HEM; 1.70A {Geobacter sulfurreducens}
SCOP: a.138.1.1
Length = 82
Score = 26.1 bits (57), Expect = 8.8
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 468 CGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDC 501
V + V + +FH+ Y C +C
Sbjct: 2 GMTPPKTVNFKMKGVADAAFSHEFHLGMYKCNEC 35
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Length = 328
Score = 27.9 bits (63), Expect = 8.9
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 281 TPPRPMGPTEAERKIEELTRQLEE 304
+P E R+ + L ++ E
Sbjct: 3 SPDADQTAPEVLRQWQALAEEVRE 26
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia
californica} SCOP: d.144.1.7
Length = 387
Score = 27.8 bits (62), Expect = 9.2
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 1/76 (1%)
Query: 259 SPSPSPKTPVTPYGKNLLPYNVTPPRPMGPTEAERKIEELTRQLEEEMEKQEEEGE-YFG 317
Y + + + +E + + + EE G FG
Sbjct: 6 HHHHHGSKVRGKYDGPKINDYDKFYEDIWKKYVPQPVEVKQGSVYDYYDILEELGSGAFG 65
Query: 318 ICHTCGEKVTGAGQAC 333
+ H C EK TG
Sbjct: 66 VVHRCVEKATGRVFVA 81
>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis,
DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania
infantum}
Length = 471
Score = 27.8 bits (62), Expect = 9.6
Identities = 3/28 (10%), Positives = 12/28 (42%)
Query: 290 EAERKIEELTRQLEEEMEKQEEEGEYFG 317
E + +++ ++ + + G Y+
Sbjct: 145 EKRKAMDDNAAYVDGLLAANQTTGPYYC 172
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.419
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,395,104
Number of extensions: 510184
Number of successful extensions: 2127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1780
Number of HSP's successfully gapped: 234
Length of query: 543
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 445
Effective length of database: 3,965,535
Effective search space: 1764663075
Effective search space used: 1764663075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.0 bits)