RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14113
(543 letters)
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 65.9 bits (161), Expect = 1e-14
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 431 CCLCNECLDGVPFTVDVDNKIYCVNDYHRMFA 462
C +C+ LDG+PFTVD ++I+C+ D+HR FA
Sbjct: 2 CVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA 33
Score = 27.4 bits (61), Expect = 0.37
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 347 CCSCGRALRGKAF-YNVHGRVYCEEDY 372
C C R L G F + +++C ED+
Sbjct: 2 CVVCHRGLDGIPFTVDATSQIHCIEDF 28
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 62.5 bits (152), Expect = 1e-13
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 398 FQQTAEKCAICGHLIMEMILQAMGKSYHPGCF 429
+ T EKCA C I++ IL+AMGK+YHPGCF
Sbjct: 4 YVATLEKCATCSQPILDRILRAMGKAYHPGCF 35
Score = 26.7 bits (59), Expect = 0.83
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 319 CHTCGEKVTGAGQACQAMGNLYHTNCF 345
C TC + + + +AMG YH CF
Sbjct: 11 CATCSQPILD--RILRAMGKAYHPGCF 35
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 46.6 bits (111), Expect = 6e-08
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 398 FQQTAEKCAICGHLIMEMILQAMGKSYHPGCF 429
+ KC C ++E L AM +HP CF
Sbjct: 4 LAMFSPKCGGCNRPVLENYLSAMDTVWHPECF 35
Score = 44.6 bits (106), Expect = 3e-07
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 456 DYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCY 496
D+ MF+PKC C + + + +MD +H +C+
Sbjct: 2 DFLAMFSPKCGGCNRPVLE-------NYLSAMDTVWHPECF 35
Score = 31.9 bits (73), Expect = 0.010
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 3/33 (9%)
Query: 314 EYFG-ICHTCGEKVTGAGQACQAMGNLYHTNCF 345
F C C V AM ++H CF
Sbjct: 5 AMFSPKCGGCNRPVLE--NYLSAMDTVWHPECF 35
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 38.9 bits (91), Expect = 3e-05
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 429 FRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAP 463
F C C + F + + + YC +D+ +FAP
Sbjct: 1 FVCAQCFQQFPEGLF-YEFEGRKYCEHDFQMLFAP 34
Score = 36.2 bits (84), Expect = 3e-04
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 345 FICCSCGRALRGKAFYNVHGRVYCEEDY 372
F+C C + FY GR YCE D+
Sbjct: 1 FVCAQCFQQFPEGLFYEFEGRKYCEHDF 28
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 37.4 bits (87), Expect = 1e-04
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 430 RCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAACGKG 471
RC C + L+ D D +IYC Y + F PK G+G
Sbjct: 1 RCAKCGKSLESTTLA-DKDGEIYCKGCYAKNFGPKGFGFGQG 41
>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 33.7 bits (77), Expect = 0.002
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 346 ICCSCGRALRGKAFYNVHGRVYCEEDYLYS 375
+C +C LRG+ FY V R YCE Y+ +
Sbjct: 1 VCSTCRAQLRGQHFYAVERRAYCEGCYVAT 30
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 33.6 bits (77), Expect = 0.003
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 403 EKCAICGHLIMEMILQAMGKSYHPGC 428
+C C I ++ A+GK+YHP C
Sbjct: 16 TRCFSCDQFIEGEVVSALGKTYHPDC 41
Score = 30.9 bits (70), Expect = 0.022
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 456 DYHRMFAPKCAACGKGIT-PVEGTEETVRVVSMDKDFHVDC 495
DY R++ +C +C + I V V ++ K +H DC
Sbjct: 9 DYQRLYGTRCFSCDQFIEGEV--------VSALGKTYHPDC 41
Score = 27.1 bits (60), Expect = 0.53
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 316 FGI-CHTCGEKVTGAGQACQAMGNLYHTNC 344
+G C +C + + G + A+G YH +C
Sbjct: 14 YGTRCFSCDQFIEG--EVVSALGKTYHPDC 41
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 45
Score = 33.2 bits (76), Expect = 0.004
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 404 KCAICGHLIMEMILQAMGKSYHPGCF 429
CA C +I L A+GKS+HP F
Sbjct: 20 MCAHCNQVIRGPFLVALGKSWHPEEF 45
Score = 25.1 bits (55), Expect = 3.7
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 9/35 (25%)
Query: 463 PKCAACGKGIT-PVEGTEETVRVVSMDKDFHVDCY 496
P CA C + I P +V++ K +H + +
Sbjct: 19 PMCAHCNQVIRGPF--------LVALGKSWHPEEF 45
>d2d8xa2 g.39.1.3 (A:8-32) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 32.2 bits (73), Expect = 0.006
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 405 CAICGHLIMEMILQAMGKSYHPGCF 429
C CG I+ +++AM S+HP CF
Sbjct: 1 CHQCGEFIIGRVIKAMNNSWHPECF 25
Score = 27.2 bits (60), Expect = 0.34
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 319 CHTCGEKVTGAGQACQAMGNLYHTNCF 345
CH CGE + G + +AM N +H CF
Sbjct: 1 CHQCGEFIIG--RVIKAMNNSWHPECF 25
>d1x61a1 g.39.1.3 (A:8-34) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 27
Score = 30.3 bits (68), Expect = 0.037
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 319 CHTCGEKVTGAGQACQAMGNLYHTNCF 345
C CGE V G G A+ ++H CF
Sbjct: 1 CGGCGEDVVGDGAGVVALDRVFHVGCF 27
Score = 24.5 bits (53), Expect = 4.2
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 465 CAACGKGITPVEGTEETVRVVSMDKDFHVDCY 496
C CG+ + + VV++D+ FHV C+
Sbjct: 1 CGGCGEDVV-----GDGAGVVALDRVFHVGCF 27
>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 35
Score = 30.1 bits (68), Expect = 0.040
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 399 QQTAEKCAICGHLI--MEMILQAMGKSYHPGCF 429
E C C + ME L A + +H CF
Sbjct: 4 APARETCVECQKTVYPMER-LLANQQVFHISCF 35
Score = 27.4 bits (61), Expect = 0.39
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 462 APKCAACGKGITPVEGTEETVRVVSMDKDFHVDCY 496
C C K + P+E R+++ + FH+ C+
Sbjct: 7 RETCVECQKTVYPME------RLLANQQVFHISCF 35
Score = 23.6 bits (51), Expect = 9.3
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 319 CHTCGEKVTGAGQACQAMGNLYHTNCF 345
C C + V + A ++H +CF
Sbjct: 10 CVECQKTVYPM-ERLLANQQVFHISCF 35
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP,
CRIP {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 29.8 bits (67), Expect = 0.046
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 462 APKCAACGKGITPVEGTEETVRVVSMDKDFHVDC 495
A KC C K + E +V S+ KD+H C
Sbjct: 2 ASKCPKCDKTVYFAE------KVSSLGKDWHKFC 29
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid
dehydrogenase, PP module {Thermus thermophilus [TaxId:
274]}
Length = 362
Score = 33.3 bits (75), Expect = 0.058
Identities = 15/227 (6%), Positives = 44/227 (19%), Gaps = 21/227 (9%)
Query: 298 LTRQLEEEMEKQEEEGEYFGICHTC-GEKVTGAGQACQAMGNLY---------HTNCFIC 347
R L+E G+ G + A+ + H
Sbjct: 42 AARMLDERYTILIRTGK-TSFIAPAAGHEAAQVA-IAHAIRPGFDWVFPYYRDHGLALAL 99
Query: 348 CSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKCAI 407
+ L G+ + + + + + +
Sbjct: 100 GIPLKELLGQMLATKADPNKGRQMP-EHPGSKALNFFTVASPIASHVPPAAGAAISMKLL 158
Query: 408 CGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAA 467
+ + G + + + G P N+++ +
Sbjct: 159 RTGQVAVCTFGDG--ATSEGDWYAGINFAAVQGAP------AVFIAENNFYAISVDYRHQ 210
Query: 468 CGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCY 514
+ + +D + Y ++ +
Sbjct: 211 THSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSL 257
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate
dehydrogenase (PP module) {Human (Homo sapiens) [TaxId:
9606]}
Length = 361
Score = 32.9 bits (74), Expect = 0.082
Identities = 29/249 (11%), Positives = 57/249 (22%), Gaps = 29/249 (11%)
Query: 298 LTRQLEEEMEKQEEEGEYFGICHTC-GEKVTGAGQACQAMGN------------LYHTNC 344
R++E + ++ ++ G CH C G++ G + T
Sbjct: 41 TVRRMELKADQLYKQKIIRGFCHLCDGQEACCVG-LEAGINPTDHLITAYRAHGFTFTRG 99
Query: 345 FICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEK 404
L G+ G+ Y + + A + ++
Sbjct: 100 LSVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDE 159
Query: 405 CAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPK 464
+ + + G L +P +N N Y + +
Sbjct: 160 VCLT---------LYGDGAANQGQIFEAYNMAALWKLPCIFICEN-----NRYGMGTSVE 205
Query: 465 CAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLMCRA 524
AA +RV MD V + + R
Sbjct: 206 RAAASTDYYKRGDFIPGLRVDGMD-ILCVREATRFAAAYCRSGKGPILMELQTYRYHGHE 264
Query: 525 CHLSHLSRH 533
+S
Sbjct: 265 MSDPGVSYR 273
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 29.0 bits (65), Expect = 0.088
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 9/37 (24%)
Query: 459 RMFAPKCAACGKGITPVEGTEETVRVV-SMDKDFHVD 494
M P C AC + P+EG RVV +M K +HV+
Sbjct: 2 SMGVPICGACRR---PIEG-----RVVNAMGKQWHVE 30
Score = 27.0 bits (60), Expect = 0.46
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 404 KCAICGHLIMEMILQAMGKSYHP 426
C C I ++ AMGK +H
Sbjct: 7 ICGACRRPIEGRVVNAMGKQWHV 29
>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 43
Score = 29.4 bits (66), Expect = 0.096
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 395 YSGFQQTAEKCAICGHLI--MEMILQAMGKSYHPGCF 429
+ ++ C CG + E ++ GKS+H CF
Sbjct: 8 MAQKVGGSDGCPRCGQAVYAAEKVI-GAGKSWHKSCF 43
Score = 27.5 bits (61), Expect = 0.43
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 462 APKCAACGKGITPVEGTEETVRVVSMDKDFHVDCY 496
+ C CG+ + E +V+ K +H C+
Sbjct: 15 SDGCPRCGQAVYAAE------KVIGAGKSWHKSCF 43
Score = 23.7 bits (51), Expect = 9.9
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCF 345
C CG+ V A + G +H +CF
Sbjct: 17 GCPRCGQAVYAAEKV-IGAGKSWHKSCF 43
>d1x64a1 g.39.1.3 (A:8-52) PDZ and LIM domain protein 3, PDLIM3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 45
Score = 29.4 bits (66), Expect = 0.10
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 400 QTAEKCAICGHLIMEMILQAMGKSYHPGCF 429
Q C CG I+ +++A K HP CF
Sbjct: 16 QRMPLCDKCGSGIVGAVVKARDKYRHPECF 45
>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin
homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 36
Score = 28.6 bits (64), Expect = 0.14
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 401 TAEKCAICGHLIMEM-ILQAMGKSYHPGCF 429
+ CA+CG + + L G +H CF
Sbjct: 7 AGDLCALCGEHLYVLERLCVNGHFFHRSCF 36
Score = 25.1 bits (55), Expect = 2.2
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
Query: 464 KCAACGKGITPVEGTEETVRVVSMDKDFHVDCY 496
CA CG+ + +E R+ FH C+
Sbjct: 10 LCALCGEHLYVLE------RLCVNGHFFHRSCF 36
>d1gyta2 c.56.5.3 (A:179-503) Leucine aminopeptidase, C-terminal
domain {Escherichia coli, PepA [TaxId: 562]}
Length = 325
Score = 32.0 bits (72), Expect = 0.16
Identities = 28/246 (11%), Positives = 54/246 (21%), Gaps = 22/246 (8%)
Query: 281 TPPRPMGPTEAERKIEELTRQLE-----EEMEKQEEEGEYFGICHTCGEKVTGAGQACQA 335
PP + +L + +Q+ + G G ++
Sbjct: 15 MPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAV-----GQGSQNES 69
Query: 336 MGNLYHTNCFICCSCGR-ALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCAICGHLIMEM 394
+ ++ L GK + S + + +
Sbjct: 70 LMSVIEYKGNASEDARPIVLVGKGLT-FDSGGISIK---PSEGMDEMKYDMCGAAAVYGV 125
Query: 395 YSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCC-----LCNECLDGVPFTVDVDN 449
+ + G L + G++Y PG + D V D
Sbjct: 126 MRMVAELQLPINVIGVLAGCENMPG-GRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDV 184
Query: 450 KIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDEP 509
Y + A G T + + + H E G + P
Sbjct: 185 LTYV-ERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLP 243
Query: 510 DKRCYP 515
Y
Sbjct: 244 LGDEYQ 249
>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 28.3 bits (63), Expect = 0.19
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 345 FICCSCGRALRGKAFYNVHGRVYCEEDY 372
F+C C + G Y G YCE Y
Sbjct: 1 FVCAKCEKPFLGHRHYERKGLAYCETHY 28
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 319
Score = 31.7 bits (70), Expect = 0.20
Identities = 19/208 (9%), Positives = 43/208 (20%), Gaps = 4/208 (1%)
Query: 306 MEKQEEEGEYFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGR 365
++ ++G +C + G AG A I G
Sbjct: 46 CKRWAKQGCAHFVCSSAGN----AGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGA 101
Query: 366 VYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYH 425
L + A+ A + + + ++ L +
Sbjct: 102 TCKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIA 161
Query: 426 PGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVV 485
L + G+ D + + + GK ++ + T +
Sbjct: 162 LSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALG 221
Query: 486 SMDKDFHVDCYMCEDCGLQLTDEPDKRC 513
E +
Sbjct: 222 VKTVGSQALKLFQEHPIFSEVISDQEAV 249
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId:
90370]}
Length = 316
Score = 31.7 bits (70), Expect = 0.20
Identities = 15/215 (6%), Positives = 41/215 (19%), Gaps = 10/215 (4%)
Query: 291 AERKIEELTRQLEEEMEKQEEEGEYFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSC 350
E + + + + + + + + + A + G T
Sbjct: 42 TEPSVSGQVQLVNNFVNQGYD---AIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPE 98
Query: 351 GRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGH 410
R+ E + +
Sbjct: 99 CRSYYINQGTPKQLGSMLVEMAAH------QVDKEKAKVAFFYSSPTVTDQNQWVKEAKA 152
Query: 411 LIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPK-CAACG 469
I + + G + +G+ + I + A +
Sbjct: 153 KISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLK 212
Query: 470 KGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQ 504
+ + G + + V + D Q
Sbjct: 213 RNNLAIVGFSTPNVMRPYVQRGTVKEFGLWDVVQQ 247
>d1x62a2 g.39.1.3 (A:8-42) PDZ and LIM domain protein 1 Elfin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 27.9 bits (62), Expect = 0.26
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 405 CAICGHLIMEMILQAMGKSYHPGCF 429
C CG I+ + ++ + HP C+
Sbjct: 11 CDKCGTGIVGVFVKLRDRHRHPECY 35
>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase
{Trypanosoma cruzi [TaxId: 5693]}
Length = 238
Score = 30.8 bits (68), Expect = 0.30
Identities = 11/94 (11%), Positives = 20/94 (21%), Gaps = 12/94 (12%)
Query: 376 GFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCN 435
G ++ + + E + M
Sbjct: 126 GSLESKNVVNVRESADPASAVKERLETEHILLASGSWPHM------------PNGRSPRT 173
Query: 436 ECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAACG 469
+ L V + N V++Y R A G
Sbjct: 174 KDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIG 207
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 31
Score = 27.4 bits (61), Expect = 0.32
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 405 CAICGHLI--MEMILQAMGKSYHPGCF 429
C+ CG I E++++A G YH CF
Sbjct: 5 CSACGQSIPASELVMRAQGNVYHLKCF 31
Score = 25.8 bits (57), Expect = 1.2
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 465 CAACGKGITPVEGTEETVRVVSMDKDFHVDCY 496
C+ACG+ I +E +R +H+ C+
Sbjct: 5 CSACGQSIPA---SELVMRA--QGNVYHLKCF 31
Score = 24.3 bits (53), Expect = 4.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 317 GICHTCGEKVTGAGQACQAMGNLYHTNCF 345
G C CG+ + + +A GN+YH CF
Sbjct: 3 GACSACGQSIPASELVMRAQGNVYHLKCF 31
>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 30
Score = 27.5 bits (61), Expect = 0.36
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 463 PKCAACGKGITPVEGTEETVRVVSMDKDFHVDCY 496
P CA CGK + P E +V +DK +H C+
Sbjct: 3 PNCARCGKIVYPTE------KVNCLDKFWHKACF 30
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 27.3 bits (60), Expect = 0.47
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 405 CAICGHLIMEMILQAMGKSYHPGC 428
C C I +L+A K YHP C
Sbjct: 8 CDSCEKYITGRVLEAGEKHYHPSC 31
>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin
reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 235
Score = 30.5 bits (67), Expect = 0.47
Identities = 15/162 (9%), Positives = 34/162 (20%), Gaps = 1/162 (0%)
Query: 308 KQEEEGEYFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVY 367
G +K+ + + K +V +
Sbjct: 42 TNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDTVKHDWEKMTESVQNHIG 101
Query: 368 CEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPG 427
++ + + T K + ++ + + G
Sbjct: 102 SLNWGYRVALREK-KVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLG 160
Query: 428 CFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAACG 469
C L+ V ++ V D + P A G
Sbjct: 161 IRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIG 202
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 27.0 bits (60), Expect = 0.48
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 346 ICCSCGRALRGKAFYNVHGRVYCEEDY 372
+C C + +F+ + GR +CE Y
Sbjct: 1 VCGDCFTSFSTGSFFELDGRPFCELHY 27
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid
dehydrogenase, PP module {Human (Homo sapiens) [TaxId:
9606]}
Length = 395
Score = 30.6 bits (68), Expect = 0.49
Identities = 21/212 (9%), Positives = 51/212 (24%), Gaps = 18/212 (8%)
Query: 298 LTRQLEEEMEKQEEEGEYFGICHTCGEKVTGAGQACQAMGNL--------YHTNCFICCS 349
L ++ + + + +G GE+ T G + A+ N
Sbjct: 61 LLNTMDRILYESQRQGRISFYMTNYGEEGTHVG-SAAALDNTDLVFGQAREAGVLMYRDY 119
Query: 350 CGRALRGKAFYNVHGRVYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICG 409
+ + N+ + ++ G ++ + A K A
Sbjct: 120 PLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANAN 179
Query: 410 HLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAACG 469
+++ + G P +C N+ + + P
Sbjct: 180 RVVI-CYFGEG--AASEGDAHAGFNFAATLECPI------IFFCRNNGYAISTPTSEQYR 230
Query: 470 KGITPVEGTEETVRVVSMDKDFHVDCYMCEDC 501
G + + +D + Y
Sbjct: 231 GDGIAARGPGYGIMSIRVDGNDVFAVYNATKE 262
>d1tz9a_ c.1.15.6 (A:) Mannonate dehydratase UxuA {Enterococcus
faecalis (Streptococcus faecalis) [TaxId: 1351]}
Length = 353
Score = 30.3 bits (68), Expect = 0.57
Identities = 20/157 (12%), Positives = 42/157 (26%), Gaps = 25/157 (15%)
Query: 379 QTAEKCAICGHLIMEMYSGFQQ--TAEKCAICGHLIMEMILQ----AMGKSYHPGCFRCC 432
E+ I + + + + + ++ A G ++ G
Sbjct: 195 PVCEEENI--KMGIHPDDPPWEIFGLPRITKNLADLKRILSLVDSPANGITFCTGSLGAD 252
Query: 433 LCNECL-------DGVPFTVDVDNKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVV 485
N+ + F + K + + P V G+ + ++
Sbjct: 253 PTNDLPTMIREIGHRINFVHFRNVKYLGEHRFEETAHP----------SVAGSLDMAELM 302
Query: 486 SMDKDFHVDCYMCEDCGLQLTDEPDKRCYPLQGRLMC 522
D + + D G + DE Y L R M
Sbjct: 303 QALVDVGYEGVIRPDHGRAIWDEKAMPGYGLYDRAMG 339
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB
{Escherichia coli [TaxId: 562]}
Length = 56
Score = 27.4 bits (61), Expect = 0.60
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 286 MGPTEAERKIEELTRQLEEEMEKQEEE 312
M P ++KI EL + + + E E
Sbjct: 10 MSPKALQQKIHELEGLMMQHAQNLEFE 36
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 26.7 bits (59), Expect = 0.65
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 314 EYFGICHTCGEKVTGAGQACQAMGNLYHTNCF 345
E C C + + Q + G ++H +CF
Sbjct: 6 EDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCF 37
Score = 25.9 bits (57), Expect = 1.5
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 457 YHRMFAPKCAACGKGITP 474
R +PKC C K I
Sbjct: 3 TTREDSPKCKGCFKAIVA 20
>d1utha_ c.94.1.1 (A:) LysR-type regulatory protein DntR
{Burkholderia sp. [TaxId: 36773]}
Length = 219
Score = 29.7 bits (65), Expect = 0.68
Identities = 10/149 (6%), Positives = 31/149 (20%), Gaps = 5/149 (3%)
Query: 389 HLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECLDGVPFTVDVD 448
+ E + + + + + V
Sbjct: 57 MESGAVDLALGLLPELQTGFFQRRLFRHRYVCMFRKDHPSAKSPMSLKQFSELEHVGVVA 116
Query: 449 NKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMCEDCGLQLTDE 508
N H G + + + + + + ++
Sbjct: 117 L-----NTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHSTDLIATVPQRFAVRCEVP 171
Query: 509 PDKRCYPLQGRLMCRACHLSHLSRHHQSP 537
P +L A +L +++++ P
Sbjct: 172 FGLTTSPHPAKLPDIAINLFWHAKYNRDP 200
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 29.7 bits (66), Expect = 0.76
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 290 EAERKIEELTRQLEEEMEKQEEEGE 314
+ +++LT ++E + + +E E
Sbjct: 240 SYQEHLKQLTEKMENDRVQLLKEQE 264
Score = 28.2 bits (62), Expect = 2.8
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 290 EAERKIEELTRQLEEEMEKQEEE 312
+ ER +E +QL E+ME +
Sbjct: 236 QKERSYQEHLKQLTEKMENDRVQ 258
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 28.7 bits (64), Expect = 0.91
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 290 EAERKIEELTRQLEEEMEKQEEEGE 314
E I+ +L ++ME +E E
Sbjct: 86 ENNNFIKMAKEKLAQKMESNKENRE 110
>d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 31
Score = 26.0 bits (57), Expect = 1.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 346 ICCSCGRALRGKAFYNVHGRVYCE 369
+C C L+ K ++ V G +YCE
Sbjct: 1 VCADCNLNLKQKGYFFVEGELYCE 24
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 411
Score = 29.7 bits (66), Expect = 1.0
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 290 EAERKIEELTRQLEEEMEKQEEEGEYFG 317
EA +K + L +++ + + E +G
Sbjct: 341 EARKKGDLLEDEVKLTIMEFESLMHTYG 368
>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 26.3 bits (58), Expect = 1.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 457 YHRMFAPKCAACGKGIT 473
Y FAP+CA C K +T
Sbjct: 3 YENKFAPRCARCSKTLT 19
>d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 25.9 bits (57), Expect = 1.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 346 ICCSCGRALRGKAFYNVHGRVYCE 369
+C CG L+ K + V ++YCE
Sbjct: 1 VCTDCGTNLKQKGHFFVEDQIYCE 24
>d1ofwa_ a.138.1.1 (A:) Nine-heme cytochrome c {Desulfovibrio
desulfuricans, ATCC 27774 [TaxId: 876]}
Length = 293
Score = 29.1 bits (63), Expect = 1.5
Identities = 21/213 (9%), Positives = 41/213 (19%), Gaps = 2/213 (0%)
Query: 319 CHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGRVYCEEDYLYSGFQ 378
CHT K G + + + + R C + +
Sbjct: 62 CHTVEGKAEGNYITLDRAMHATNIAKRAKGNTPVSCVSCHEQQTKERRECAGCHAIVTPK 121
Query: 379 QTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCFRCCLCNECL 438
+ CA C ++ M Q + + + + L +
Sbjct: 122 RDEAWCATCHNITPSMTPEQMQKGINGTLLPGDNEALAAETVLAQKTVEPVSPMLAPYKV 181
Query: 439 DGVPFTVDVDNKIYCVNDYHRMFAPKCAACGKGITPVEGTEETVRVVSMDKDFHVDCYMC 498
+ + + + E + C
Sbjct: 182 VIDALADKYEPSNFTHRRHLTSLMERIKDDKLAQAFHNKPEILCATCHHRSPLSLTPPKC 241
Query: 499 EDC--GLQLTDEPDKRCYPLQGRLMCRACHLSH 529
C P + L C CH
Sbjct: 242 GSCHTKEIDKANPGRPNLMAAYHLQCMGCHKGM 274
>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 25.5 bits (56), Expect = 1.8
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 431 CCLCNECLDGVPFTVDVDNKIYCVNDYHRMFA 462
C C L G FT D YCV + +FA
Sbjct: 2 CTGCQTPLAGQQFTSR-DEDPYCVACFGELFA 32
>d1j2oa2 g.39.1.3 (A:31-63) Rhombotin-2 (Lmo2) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 33
Score = 25.2 bits (55), Expect = 2.3
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 347 CCSCGRALRGKAFYNVHGRVYCEEDYL 373
C C G+ Y GR C DYL
Sbjct: 5 LCGCRLGEVGRRLYYKLGRKLCRRDYL 31
>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga
maritima [TaxId: 2336]}
Length = 267
Score = 28.0 bits (61), Expect = 2.4
Identities = 17/178 (9%), Positives = 43/178 (24%), Gaps = 1/178 (0%)
Query: 300 RQLEEEMEKQEEEGEY-FGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKA 358
R L + +++ + F G V + + + L
Sbjct: 43 RMLVSTLNVEKKYFKRTFPTIAYNGAIVYLPEEGVILNEKIPPEVAKDIIEYIKPLNVHW 102
Query: 359 FYNVHGRVYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQ 418
+ +Y E+D + T + I ++ + +
Sbjct: 103 QAYIDDVLYSEKDNEEIKSYARHSNVDYRVEPNLSELVSKMGTTKLLLIDTPERLDELKE 162
Query: 419 AMGKSYHPGCFRCCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAACGKGITPVE 476
+ + + L+ VP VD + + + + G +
Sbjct: 163 ILSERFKDVVKVFKSFPTYLEIVPKNVDKGKALRFLRERMNWKKEEIVVFGDNENDLF 220
>d1wyha2 g.39.1.3 (A:8-34) Four and a half LIM domains 3, FHL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 27
Score = 25.0 bits (54), Expect = 2.5
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 319 CHTCGEKVTGAGQACQAMGNLYHTNCF 345
C CGE V + + G +H +CF
Sbjct: 1 CSACGETVMPGSRKLEYGGQTWHEHCF 27
>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 65
Score = 26.0 bits (57), Expect = 2.5
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 431 CCLCNECLDGVPFTVDVDNKIYCVNDYHRMFAPKCAACGKG 471
C +C + LD ++IYC + Y + + PK G G
Sbjct: 2 CMVCKKNLDSTTVA-VHGDEIYCKSCYGKKYGPKGKGKGMG 41
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 221
Score = 27.6 bits (60), Expect = 3.1
Identities = 10/132 (7%), Positives = 29/132 (21%), Gaps = 14/132 (10%)
Query: 306 MEKQEEEGEYFGICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCGRALRGKAFYNVHGR 365
+E + Y G ++ + + + +
Sbjct: 89 AAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVNGNVMRVLSRLFL 148
Query: 366 VYCEEDYLYSGFQQTAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYH 425
V + + + I + ++ ++E + +
Sbjct: 149 VTDDIAKCSTRKRFEQIVREIMAYENPGAFN-------------EALIE-LGALVCTPRR 194
Query: 426 PGCFRCCLCNEC 437
P C C + C
Sbjct: 195 PSCLLCPVQAYC 206
>d2cura1 g.39.1.3 (A:33-63) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 24.5 bits (53), Expect = 3.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 346 ICCSCGRALRGKAFYNVHGRVYCEEDY 372
+C +C + L G+ F V + YC + Y
Sbjct: 1 VCVTCSKKLAGQRFTAVEDQYYCVDCY 27
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 33
Score = 24.5 bits (53), Expect = 4.1
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 347 CCSC-GRALRGKAFYNVHGRVYCEED 371
C +C R + G F+ ++G ++CE D
Sbjct: 2 CSTCRNRLVPGDRFHYINGSLFCEHD 27
>d1x6aa1 g.39.1.3 (A:8-41) Lim domain kinase 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 34
Score = 24.4 bits (53), Expect = 4.1
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 402 AEKCAICGHLIMEMILQAMGKSYHPGC 428
E C C L+ + A YHP C
Sbjct: 8 GEFCHGCSLLMTGPFMVAGEFKYHPEC 34
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 26.1 bits (57), Expect = 4.2
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 15/59 (25%)
Query: 318 ICHTCGEKVTGAGQACQAMGNLYHTNCFICCSCG----RALRGKAFYNVHGRVYCEEDY 372
IC CG++ TG +H N C C R+++ KA + C
Sbjct: 2 ICGVCGDRATG-----------FHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITK 49
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 25.3 bits (55), Expect = 5.7
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 10/65 (15%)
Query: 392 MEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGCF---------RCCLCNECLDGV- 441
E+Y T + C IC ++ ++ G C C C + G
Sbjct: 13 YELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 72
Query: 442 PFTVD 446
P VD
Sbjct: 73 PIVVD 77
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 23.9 bits (52), Expect = 6.7
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 341 HTN--CFICCSCGRALRGKAFYNVHGRVYCEEDY 372
HT + C C + R K ++H + Y + ++
Sbjct: 3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF 36
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.7 bits (51), Expect = 6.9
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 465 CAACGKGITPVEGTEETVRVVSM-DKDFHVDCY 496
CA C I+ + GT + +S ++ +H DC+
Sbjct: 1 CAGCTNPISGLGGT----KYISFEERQWHNDCF 29
>d2b5ua2 b.110.1.1 (A:84-315) Colicin E3 N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 232
Score = 26.7 bits (59), Expect = 7.1
Identities = 14/107 (13%), Positives = 29/107 (27%), Gaps = 34/107 (31%)
Query: 232 KAVPVKTATSLSVT----PNYQVSSPVDTTPSPSPSPKTP-------------------- 267
A P + + + P +S T + SP
Sbjct: 127 DAKPTERPGVFTASIPGAPVLNISVNNSTPAVQTLSPGVTNNTDKDVRPAGFTQGGNTRD 186
Query: 268 ---VTPYGKNLLPYNVTPPRPMGPTEAERKIEELTRQLEEEMEKQEE 311
P V+ + P +++ ++ +EE +Q+E
Sbjct: 187 AVIRFPKDSGHNAVYVSVSDVLSP-------DQVKQRQDEENRRQQE 226
>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 23.6 bits (51), Expect = 7.3
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 347 CCSCGRALRGKAFYNVHGRVYCEEDY 372
C +C L G+ + + G YCE DY
Sbjct: 2 CQTCSVILTGE-YISKDGVPYCESDY 26
>d1j5xa_ c.80.1.1 (A:) Hypothetical protein TM0813 {Thermotoga
maritima [TaxId: 2336]}
Length = 329
Score = 26.9 bits (58), Expect = 7.6
Identities = 13/158 (8%), Positives = 32/158 (20%), Gaps = 10/158 (6%)
Query: 389 HLIMEMYSGFQQTAEKCAICGHLIME----MILQAMGKSYHPGCFRCCLCNECLDGVPFT 444
+ + + + F EK I + ++ G SY+ L
Sbjct: 12 NELKKFFENFVLNLEKTEIFSEIQKNLTDEVLFVGCGSSYNLALTISYYFERVLKIRTKA 71
Query: 445 VDVDNKIYCVNDYHRMFAPKCAACGKGIT--PVEGTEETVRVVSMDKDFHVD----CYMC 498
+ + G T + + + ++
Sbjct: 72 IPAGEVAFQKIPDLEERGLAFLFSRTGNTTEVLLANDVLKKRNHRTIGITIEEESRLAKE 131
Query: 499 EDCGLQLTDEPDKRCYPLQGRLMCRACHLSHLSRHHQS 536
D L + ++ + S
Sbjct: 132 SDLPLVFPVREEAIVMTKSFSMILLSLMFLADKIAGNS 169
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 37
Score = 23.9 bits (52), Expect = 8.0
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 6/28 (21%)
Query: 383 KCAICGHLIMEMYSGFQQTAEKCAICGH 410
C ICG+ ++ + E C +CG
Sbjct: 7 ICPICGYTAVD------EAPEYCPVCGA 28
>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 27
Score = 23.4 bits (50), Expect = 8.6
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 319 CHTCGEKVTGAGQACQAMGNLYHTNCF 345
C C + + + + G+ +H CF
Sbjct: 1 CQECKKTIMPGTRKMEYKGSSWHETCF 27
>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 44
Score = 23.9 bits (52), Expect = 8.6
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
Query: 383 KCAICGHLIMEMYSGFQQTAEKCAICGH 410
+C CG++ + G E C C H
Sbjct: 10 RCRNCGYV----HEG-TGAPELCPACAH 32
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 30
Score = 23.5 bits (51), Expect = 9.3
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 20/49 (40%)
Query: 380 TAEKCAICGHLIMEMYSGFQQTAEKCAICGHLIMEMILQAMGKSYHPGC 428
+ ++CA CG I + + +L AM +H C
Sbjct: 1 SWKRCAGCGGKIADRF--------------------LLYAMDSYWHSRC 29
>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 23.7 bits (51), Expect = 9.5
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 319 CHTCGEKVTGAGQACQAMGNLYHTNCF 345
C C E++ GQ+ A+ +H +CF
Sbjct: 11 CAGCKEEIKH-GQSLLALDKQWHVSCF 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.419
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,090,869
Number of extensions: 104800
Number of successful extensions: 554
Number of sequences better than 10.0: 1
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 133
Length of query: 543
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 453
Effective length of database: 1,171,896
Effective search space: 530868888
Effective search space used: 530868888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.6 bits)