BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14114
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZWW|A Chain A, Crystal Structure Of Endophilin-A1 Bar Domain
pdb|1ZWW|B Chain B, Crystal Structure Of Endophilin-A1 Bar Domain
Length = 256
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 99/234 (42%), Gaps = 14/234 (5%)
Query: 14 RVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLF 73
+ Q EK+G +E T+LD F+ + + DVT +I+ T L PNP +R + +
Sbjct: 12 KATQKVSEKVGGAEGTKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMI 71
Query: 74 EKIEKKR-----PSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREF 128
+ K R P L M + G G +G AL +VG+ ++L +
Sbjct: 72 NTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSL 131
Query: 129 VNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERD 188
+F+ PLQ + +++ I LE +RLD K R K + +
Sbjct: 132 DMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQGKI---------PDEE 182
Query: 189 LRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDL 242
LR A +FD EI + + + + L V+AQ+ Y+ +I+Q +
Sbjct: 183 LRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQV 236
>pdb|2D4C|A Chain A, Crystal Structure Of The Endophilin Bar Domain Mutant
pdb|2D4C|B Chain B, Crystal Structure Of The Endophilin Bar Domain Mutant
pdb|2D4C|C Chain C, Crystal Structure Of The Endophilin Bar Domain Mutant
pdb|2D4C|D Chain D, Crystal Structure Of The Endophilin Bar Domain Mutant
Length = 256
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 103/240 (42%), Gaps = 22/240 (9%)
Query: 14 RVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLF 73
+ Q EK+G +E T+LD F+ + + DVT +I+ T L PNP +R + +
Sbjct: 17 KATQKVSEKVGGAEGTKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMI 76
Query: 74 EKIEKKR-----PSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREF 128
+ K R P L M + G G +G AL +VG+ ++L +
Sbjct: 77 NTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSL 136
Query: 129 VNSAHVSFVQPLQKFLEGEMKTIVKERSL------LESKRLDLDSCKNRVRKARSLLGTQ 182
+F+ PLQ + +++ I + +L LE +RLD D K R K
Sbjct: 137 DIEVKQNFIDPLQNLHDKDLREI--QSALQHHLKKLEGRRLDFDYKKKRQGKI------- 187
Query: 183 SNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDL 242
+ +LR A +FD EI + + + + L V+AQ+ Y+ +I+Q +
Sbjct: 188 --PDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQV 245
>pdb|2Z0V|A Chain A, Crystal Structure Of Bar Domain Of Endophilin-Iii
pdb|2Z0V|B Chain B, Crystal Structure Of Bar Domain Of Endophilin-Iii
Length = 240
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 24/231 (10%)
Query: 26 SEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLS 85
+E T+LD F + DVT +I+ T L PNP R + + K R
Sbjct: 8 AEGTKLDDEFLDXERKIDVTNKVVAEILSKTTEYLQPNPAYRAKLGXLNTVSKIR----G 63
Query: 86 NLEYLGLDMTEA---------GNAFGPGTTYGTALIKVGQYEQKLGAAEREFVN-SAHVS 135
++ G TE G G +T+G ALI+VG+ KL A ++ ++ + +
Sbjct: 64 QVKTTGYPQTEGLLGDCXLKYGKELGEDSTFGNALIEVGE-SXKLXAEVKDSLDINVKQT 122
Query: 136 FVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSE 195
F+ PLQ + ++K I LE +RLD D K RV K + ++R A +
Sbjct: 123 FIDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVGKI---------PDEEVRQAVEK 173
Query: 196 FDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNEL 246
F+ E+ + + + L F+EA ++Y+ +I+Q+L+++L
Sbjct: 174 FEESKELAERSXFNFLENDVEQVSQLAVFIEAALDYHRQSTEILQELQSKL 224
>pdb|1X03|A Chain A, Crystal Structure Of Endophilin Bar Domain
Length = 252
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 94/234 (40%), Gaps = 14/234 (5%)
Query: 14 RVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLF 73
+ Q EK+G +E T+LD F+ + DVT +I T L PNP +R +
Sbjct: 17 KATQKVSEKVGGAEGTKLDDDFKEXERKVDVTSRAVXEIXTKTIEYLQPNPASRAKLSXI 76
Query: 74 EKIEKKR-----PSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREF 128
K R P L + G G +G AL +VG+ ++L +
Sbjct: 77 NTXSKIRGQEKGPGYPQAEALLAEAXLKFGRELGDDCNFGPALGEVGEAXRELSEVKDSL 136
Query: 129 VNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERD 188
+F+ PLQ + +++ I LE +RLD D K R K + +
Sbjct: 137 DIEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKI---------PDEE 187
Query: 189 LRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDL 242
LR A +FD EI + + + L V+AQ+ Y+ +I+Q +
Sbjct: 188 LRQALEKFDESKEIAESSXFNLLEXDIEQVSQLSALVQAQLEYHKQAVQILQQV 241
>pdb|2C08|A Chain A, Rat Endophilin A1 Bar Domain
Length = 204
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 85/214 (39%), Gaps = 23/214 (10%)
Query: 27 EKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSN 86
E T+LD F+ + DVT +I T L PNP +R +P +
Sbjct: 1 EGTKLDDDFKEXERKVDVTSRAVXEIXTKTIEYLQPNPASRA-----------KPQAEAL 49
Query: 87 LEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEG 146
L + G G +G AL +VG+ ++L + +F+ PLQ +
Sbjct: 50 LAEA---XLKFGRELGDDCNFGPALGEVGEAXRELSEVKDSLDXEVKQNFIDPLQNLHDK 106
Query: 147 EMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLL 206
+++ I LE +RLD D K R K + +LR A +FD EI +
Sbjct: 107 DLREIQHHLKKLEGRRLDFDYKKKRQGKI---------PDEELRQALEKFDESKEIAESS 157
Query: 207 LEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQ 240
+ + L V+AQ+ Y+ +I+Q
Sbjct: 158 XFNLLEXDIEQVSQLSALVQAQLEYHKQAVQILQ 191
>pdb|1X04|A Chain A, Crystal Structure Of Endophilin Bar Domain (Mutant)
Length = 230
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 86/227 (37%), Gaps = 26/227 (11%)
Query: 14 RVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLF 73
+ Q EK+G +E T+LD F+ + DVT +I T L
Sbjct: 17 KATQKVSEKVGGAEGTKLDDDFKEXERKVDVTSRAVXEIXTKTIEYLA------------ 64
Query: 74 EKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAH 133
S L L + G G +G AL +VG+ ++L +
Sbjct: 65 -----HLSSLLQAEALLAEAXLKFGRELGDDCNFGPALGEVGEAXRELSEVKDSLDIEVK 119
Query: 134 VSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQ 193
+F+ PLQ + +++ I LE +RLD D K R K + +LR A
Sbjct: 120 QNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKI---------PDEELRQAL 170
Query: 194 SEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQ 240
+FD EI + + + L V+AQ+ Y+ +I+Q
Sbjct: 171 EKFDESKEIAESSXFNLLEXDIEQVSQLSALVQAQLEYHKQAVQILQ 217
>pdb|1YJE|A Chain A, Crystal Structure Of The Rngfi-B Ligand-Binding Domain
Length = 264
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 13 SRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFL 72
S+ +L + G + ++ ++ L+G DV + W EKI G + +PG+ +D L
Sbjct: 51 SKFQELVLPRFGKEDAGDVQQFYDLLSGSLDVIRKWAEKIPG----FIELSPGD--QDLL 104
Query: 73 FE 74
E
Sbjct: 105 LE 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,700,064
Number of Sequences: 62578
Number of extensions: 260840
Number of successful extensions: 557
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 11
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)