Query psy14114
Match_columns 248
No_of_seqs 111 out of 477
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 19:53:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07616 BAR_Endophilin_B1 The 100.0 6.1E-62 1.3E-66 405.1 27.1 229 17-246 1-229 (229)
2 cd07594 BAR_Endophilin_B The B 100.0 1.1E-61 2.4E-66 405.3 27.5 229 17-246 1-229 (229)
3 cd07617 BAR_Endophilin_B2 The 100.0 1.3E-61 2.8E-66 399.4 26.8 220 17-246 1-220 (220)
4 cd07613 BAR_Endophilin_A1 The 100.0 1.1E-55 2.5E-60 365.7 25.8 212 27-247 1-217 (223)
5 cd07614 BAR_Endophilin_A2 The 100.0 2.8E-55 6.2E-60 364.2 26.2 212 27-247 1-217 (223)
6 KOG3725|consensus 100.0 1.6E-55 3.4E-60 363.0 23.8 247 1-247 5-263 (375)
7 cd07615 BAR_Endophilin_A3 The 100.0 8E-55 1.7E-59 361.1 26.5 212 27-247 1-217 (223)
8 cd07592 BAR_Endophilin_A The B 100.0 1.3E-53 2.8E-58 356.1 26.2 212 27-247 1-217 (223)
9 cd07619 BAR_Rich2 The Bin/Amph 100.0 1.5E-50 3.3E-55 339.6 25.4 217 21-247 2-229 (248)
10 KOG1118|consensus 100.0 2.6E-50 5.7E-55 338.8 25.9 229 9-246 2-235 (366)
11 cd07595 BAR_RhoGAP_Rich-like T 100.0 8.4E-50 1.8E-54 338.2 25.8 217 21-247 2-225 (244)
12 cd07618 BAR_Rich1 The Bin/Amph 100.0 1.5E-49 3.2E-54 334.5 25.5 217 21-247 2-227 (246)
13 cd07593 BAR_MUG137_fungi The B 100.0 4E-49 8.6E-54 327.1 25.2 207 27-247 1-209 (215)
14 cd07620 BAR_SH3BP1 The Bin/Amp 100.0 1.6E-44 3.5E-49 301.3 25.1 215 23-247 3-238 (257)
15 PF10455 BAR_2: Bin/amphiphysi 100.0 2.7E-40 5.9E-45 283.3 27.8 237 9-248 3-289 (289)
16 cd07600 BAR_Gvp36 The Bin/Amph 100.0 2E-40 4.3E-45 279.7 25.4 208 37-246 2-242 (242)
17 smart00721 BAR BAR domain. 100.0 6E-39 1.3E-43 272.7 25.7 230 8-248 2-239 (239)
18 PF03114 BAR: BAR domain; Int 100.0 1.2E-32 2.6E-37 231.1 21.7 227 9-247 2-229 (229)
19 cd07612 BAR_Bin2 The Bin/Amphi 99.9 9.1E-22 2E-26 162.0 21.5 203 21-248 1-208 (211)
20 cd07588 BAR_Amphiphysin The Bi 99.9 6.4E-21 1.4E-25 158.2 21.4 203 21-248 1-208 (211)
21 cd07639 BAR_ACAP1 The Bin/Amph 99.9 7.4E-21 1.6E-25 155.9 20.3 160 87-246 39-200 (200)
22 cd07611 BAR_Amphiphysin_I_II T 99.9 1.6E-20 3.5E-25 154.7 21.6 202 21-247 1-207 (211)
23 cd07590 BAR_Bin3 The Bin/Amphi 99.9 4.5E-20 9.7E-25 154.5 23.2 202 26-247 5-213 (225)
24 cd07603 BAR_ACAPs The Bin/Amph 99.9 2.6E-20 5.6E-25 153.9 19.9 160 87-246 39-200 (200)
25 cd07637 BAR_ACAP3 The Bin/Amph 99.9 4.5E-20 9.7E-25 152.1 20.7 192 31-246 7-200 (200)
26 cd07591 BAR_Rvs161p The Bin/Am 99.9 6E-20 1.3E-24 154.5 21.3 206 22-247 1-212 (224)
27 cd07638 BAR_ACAP2 The Bin/Amph 99.9 7.1E-20 1.5E-24 150.3 20.4 192 31-246 7-200 (200)
28 cd07606 BAR_SFC_plant The Bin/ 99.9 6.8E-20 1.5E-24 151.1 20.1 192 35-245 3-202 (202)
29 cd07307 BAR The Bin/Amphiphysi 99.9 1.4E-19 3E-24 147.3 21.6 186 42-244 2-193 (194)
30 cd07604 BAR_ASAPs The Bin/Amph 99.9 3.9E-19 8.4E-24 148.1 22.4 162 87-248 39-214 (215)
31 cd07601 BAR_APPL The Bin/Amphi 99.8 4.5E-19 9.7E-24 147.1 21.7 192 32-247 8-208 (215)
32 cd07641 BAR_ASAP1 The Bin/Amph 99.8 7.2E-19 1.6E-23 143.2 22.3 194 31-248 7-214 (215)
33 KOG3771|consensus 99.8 5E-19 1.1E-23 158.3 20.5 219 4-247 2-228 (460)
34 cd07642 BAR_ASAP2 The Bin/Amph 99.8 1.8E-18 4E-23 141.7 22.2 183 42-248 18-214 (215)
35 cd07602 BAR_RhoGAP_OPHN1-like 99.8 2.3E-18 5.1E-23 141.8 20.7 195 35-246 4-207 (207)
36 cd07636 BAR_GRAF The Bin/Amphi 99.8 5.4E-18 1.2E-22 139.3 18.6 195 34-245 3-206 (207)
37 cd07634 BAR_GAP10-like The Bin 99.8 1.1E-17 2.4E-22 137.4 18.6 195 35-246 4-207 (207)
38 cd07635 BAR_GRAF2 The Bin/Amph 99.8 1.4E-17 3.1E-22 136.9 17.9 195 34-245 3-206 (207)
39 cd07633 BAR_OPHN1 The Bin/Amph 99.8 2.4E-16 5.1E-21 128.3 20.4 191 32-246 8-207 (207)
40 cd07640 BAR_ASAP3 The Bin/Amph 99.7 5.2E-15 1.1E-19 119.2 20.6 161 88-248 40-212 (213)
41 cd07631 BAR_APPL1 The Bin/Amph 99.7 2.4E-14 5.2E-19 117.4 19.5 160 88-247 40-208 (215)
42 cd07589 BAR_DNMBP The Bin/Amph 99.6 4.8E-14 1E-18 116.5 20.6 181 31-239 3-186 (195)
43 cd07599 BAR_Rvs167p The Bin/Am 99.6 5.2E-14 1.1E-18 118.2 21.0 193 32-242 1-212 (216)
44 cd07632 BAR_APPL2 The Bin/Amph 99.6 2E-13 4.4E-18 111.2 19.4 156 88-243 40-203 (215)
45 PF06456 Arfaptin: Arfaptin-li 99.4 1.1E-10 2.4E-15 98.4 21.3 210 10-239 7-229 (229)
46 KOG0521|consensus 99.3 6.3E-11 1.4E-15 115.2 18.0 193 31-247 26-221 (785)
47 cd07624 BAR_SNX7_30 The Bin/Am 99.3 6.5E-10 1.4E-14 92.2 21.0 187 31-244 12-199 (200)
48 cd07598 BAR_FAM92 The Bin/Amph 99.3 2E-09 4.4E-14 89.7 22.0 193 32-247 3-203 (211)
49 PF09325 Vps5: Vps5 C terminal 99.3 2.5E-09 5.5E-14 90.6 22.8 197 30-245 21-236 (236)
50 cd07628 BAR_Atg24p The Bin/Amp 99.3 2E-09 4.3E-14 88.3 21.1 181 32-244 3-184 (185)
51 cd07596 BAR_SNX The Bin/Amphip 99.2 3.1E-09 6.8E-14 88.6 19.9 196 31-244 2-217 (218)
52 cd07660 BAR_Arfaptin The Bin/A 99.2 1E-08 2.2E-13 84.0 21.1 185 40-245 9-200 (201)
53 cd00011 BAR_Arfaptin_like The 99.1 1.6E-08 3.4E-13 83.3 20.2 190 33-243 2-201 (203)
54 cd07622 BAR_SNX4 The Bin/Amphi 99.1 2.2E-08 4.8E-13 83.0 21.4 189 30-246 11-200 (201)
55 cd07629 BAR_Atg20p The Bin/Amp 99.0 1.5E-07 3.2E-12 77.3 21.3 182 31-244 2-186 (187)
56 cd07663 BAR_SNX5 The Bin/Amphi 99.0 6.2E-07 1.4E-11 74.7 24.6 215 11-246 2-217 (218)
57 KOG3876|consensus 99.0 1.7E-07 3.7E-12 78.7 20.8 211 14-246 107-324 (341)
58 cd07623 BAR_SNX1_2 The Bin/Amp 99.0 2.6E-07 5.7E-12 78.0 22.5 198 29-245 8-222 (224)
59 cd07621 BAR_SNX5_6 The Bin/Amp 99.0 4.6E-07 1E-11 75.7 23.5 214 12-246 3-218 (219)
60 cd07666 BAR_SNX7 The Bin/Amphi 99.0 1.6E-07 3.5E-12 79.6 20.8 189 31-243 52-241 (243)
61 cd07630 BAR_SNX_like The Bin/A 98.9 1.1E-06 2.5E-11 72.6 22.8 193 31-243 2-196 (198)
62 cd07667 BAR_SNX30 The Bin/Amph 98.9 2.6E-07 5.5E-12 78.1 19.2 190 31-244 49-239 (240)
63 cd07627 BAR_Vps5p The Bin/Amph 98.9 6.3E-07 1.4E-11 75.3 21.0 195 30-243 1-214 (216)
64 cd07664 BAR_SNX2 The Bin/Amphi 98.9 8.3E-07 1.8E-11 75.2 21.6 200 28-246 17-233 (234)
65 cd07659 BAR_PICK1 The Bin/Amph 98.8 1.3E-06 2.8E-11 71.4 19.0 188 35-241 4-209 (215)
66 cd07665 BAR_SNX1 The Bin/Amphi 98.8 3.3E-06 7.1E-11 71.5 21.0 200 29-246 18-233 (234)
67 PF06730 FAM92: FAM92 protein; 98.8 7.1E-06 1.5E-10 68.0 22.1 193 32-246 10-209 (219)
68 cd07662 BAR_SNX6 The Bin/Amphi 98.7 2.4E-05 5.3E-10 65.0 23.7 214 12-246 3-217 (218)
69 cd07661 BAR_ICA69 The Bin/Amph 98.6 2E-05 4.3E-10 64.1 20.3 185 41-245 10-203 (204)
70 cd07626 BAR_SNX9_like The Bin/ 98.5 2.3E-05 5.1E-10 64.7 18.6 187 38-244 2-197 (199)
71 cd07609 BAR_SIP3_fungi The Bin 98.4 2.1E-05 4.5E-10 65.8 16.1 109 104-212 57-168 (214)
72 cd07607 BAR_SH3P_plant The Bin 98.4 0.00052 1.1E-08 55.2 22.1 186 42-244 10-208 (209)
73 cd07645 I-BAR_IMD_BAIAP2L1 Inv 98.4 0.00012 2.5E-09 60.6 18.9 158 88-247 44-221 (226)
74 cd07646 I-BAR_IMD_IRSp53 Inver 98.4 0.00016 3.4E-09 60.3 19.3 158 88-247 46-223 (232)
75 PF08397 IMD: IRSp53/MIM homol 98.3 0.001 2.2E-08 56.0 23.7 140 105-247 54-209 (219)
76 cd07605 I-BAR_IMD Inverse (I)- 98.3 0.00044 9.5E-09 58.2 21.1 144 104-247 63-220 (223)
77 cd07625 BAR_Vps17p The Bin/Amp 98.2 0.00071 1.5E-08 57.2 21.2 156 87-244 55-229 (230)
78 PF10456 BAR_3_WASP_bdg: WASP- 98.0 0.001 2.2E-08 56.5 17.2 193 32-246 33-236 (237)
79 cd07668 BAR_SNX9 The Bin/Amphi 98.0 0.0016 3.5E-08 53.6 17.6 190 32-247 4-208 (210)
80 KOG1451|consensus 97.9 0.0016 3.4E-08 61.0 18.8 194 36-247 23-225 (812)
81 cd07644 I-BAR_IMD_BAIAP2L2 Inv 97.9 0.0036 7.9E-08 51.4 18.8 149 88-247 44-212 (215)
82 cd07669 BAR_SNX33 The Bin/Amph 97.8 0.0035 7.5E-08 51.6 17.2 188 32-244 4-205 (207)
83 cd07670 BAR_SNX18 The Bin/Amph 97.8 0.0047 1E-07 50.8 17.4 187 32-244 4-205 (207)
84 cd07608 BAR_ArfGAP_fungi The B 97.7 0.0097 2.1E-07 48.7 18.0 186 35-246 3-192 (192)
85 cd07653 F-BAR_CIP4-like The F- 97.7 0.028 6E-07 48.1 21.4 72 105-176 61-153 (251)
86 KOG4270|consensus 97.5 1E-05 2.2E-10 76.1 -2.8 137 107-244 2-148 (577)
87 cd07643 I-BAR_IMD_MIM Inverse 97.3 0.078 1.7E-06 44.4 22.8 47 105-151 67-113 (231)
88 cd07657 F-BAR_Fes_Fer The F-BA 96.6 0.4 8.7E-06 40.8 17.6 88 139-236 116-203 (237)
89 KOG3651|consensus 96.5 0.19 4.2E-06 43.8 15.1 213 9-243 100-341 (429)
90 cd07655 F-BAR_PACSIN The F-BAR 96.3 0.59 1.3E-05 40.3 21.9 40 106-145 61-100 (258)
91 cd07676 F-BAR_FBP17 The F-BAR 96.3 0.65 1.4E-05 40.0 20.9 26 120-145 78-103 (253)
92 cd07597 BAR_SNX8 The Bin/Amphi 96.1 0.79 1.7E-05 39.2 20.8 140 106-246 88-246 (246)
93 KOG2273|consensus 96.0 1.4 3.1E-05 41.6 20.2 194 32-244 273-496 (503)
94 cd07658 F-BAR_NOSTRIN The F-BA 95.9 0.91 2E-05 38.7 22.3 96 32-146 4-99 (239)
95 KOG3891|consensus 95.8 1.2 2.7E-05 39.5 23.2 222 4-245 18-251 (436)
96 cd07649 F-BAR_GAS7 The F-BAR ( 95.7 1.1 2.3E-05 38.1 20.7 66 106-171 57-143 (233)
97 cd07651 F-BAR_PombeCdc15_like 95.3 1.6 3.5E-05 37.0 22.6 40 106-145 57-96 (236)
98 cd07606 BAR_SFC_plant The Bin/ 94.0 3.1 6.7E-05 34.6 16.6 96 139-243 64-164 (202)
99 cd07647 F-BAR_PSTPIP The F-BAR 93.8 3.7 8E-05 34.9 21.1 70 106-176 57-147 (239)
100 KOG1660|consensus 93.8 4.8 0.0001 36.0 15.4 97 147-243 296-393 (399)
101 cd07648 F-BAR_FCHO The F-BAR ( 93.5 4.4 9.4E-05 34.8 19.9 39 106-145 57-95 (261)
102 cd07675 F-BAR_FNBP1L The F-BAR 93.1 5.1 0.00011 34.4 21.2 88 146-243 124-212 (252)
103 cd07673 F-BAR_FCHO2 The F-BAR 92.7 6.2 0.00013 34.2 20.4 39 106-145 64-102 (269)
104 cd07674 F-BAR_FCHO1 The F-BAR 92.6 6.2 0.00014 34.0 20.0 57 88-145 36-95 (261)
105 cd07610 FCH_F-BAR The Extended 92.2 5.2 0.00011 32.3 19.2 45 105-150 53-97 (191)
106 cd07681 F-BAR_PACSIN3 The F-BA 91.2 9.1 0.0002 33.0 20.7 37 106-142 61-97 (258)
107 cd07639 BAR_ACAP1 The Bin/Amph 91.1 7.9 0.00017 32.1 14.1 27 35-61 4-30 (200)
108 cd07619 BAR_Rich2 The Bin/Amph 91.1 9.2 0.0002 32.8 18.1 146 87-247 76-236 (248)
109 PF04048 Sec8_exocyst: Sec8 ex 88.2 10 0.00023 29.4 13.3 71 103-174 32-104 (142)
110 cd07307 BAR The Bin/Amphiphysi 88.0 11 0.00024 29.5 18.8 120 35-170 2-122 (194)
111 cd07672 F-BAR_PSTPIP2 The F-BA 87.7 16 0.00036 31.1 20.9 37 106-143 58-94 (240)
112 PF03114 BAR: BAR domain; Int 87.6 14 0.0003 30.1 15.1 150 1-170 1-159 (229)
113 PF13805 Pil1: Eisosome compon 87.4 19 0.0004 31.3 17.0 97 88-194 81-179 (271)
114 smart00721 BAR BAR domain. 86.8 17 0.00036 30.2 19.4 155 1-171 2-163 (239)
115 cd07685 F-BAR_Fes The F-BAR (F 86.5 19 0.00041 30.6 20.3 43 149-199 131-173 (237)
116 cd07680 F-BAR_PACSIN1 The F-BA 86.2 21 0.00046 30.8 21.1 23 34-56 6-28 (258)
117 cd07650 F-BAR_Syp1p_like The F 86.1 19 0.00042 30.3 20.5 135 109-244 62-204 (228)
118 cd07638 BAR_ACAP2 The Bin/Amph 85.8 19 0.00041 29.9 16.6 28 34-61 3-30 (200)
119 cd07618 BAR_Rich1 The Bin/Amph 83.6 27 0.00059 29.9 14.8 143 87-246 76-233 (246)
120 cd07603 BAR_ACAPs The Bin/Amph 81.2 30 0.00065 28.6 16.0 28 34-61 3-30 (200)
121 cd07602 BAR_RhoGAP_OPHN1-like 79.5 35 0.00076 28.4 18.9 137 88-243 22-168 (207)
122 cd07604 BAR_ASAPs The Bin/Amph 79.4 36 0.00078 28.5 16.5 27 35-61 4-30 (215)
123 cd07671 F-BAR_PSTPIP1 The F-BA 79.2 39 0.00085 28.8 22.1 38 107-145 58-95 (242)
124 cd07637 BAR_ACAP3 The Bin/Amph 77.5 40 0.00086 27.9 16.6 28 34-61 3-30 (200)
125 KOG2528|consensus 76.3 49 0.0011 30.8 11.2 90 32-130 322-416 (490)
126 cd07593 BAR_MUG137_fungi The B 75.6 47 0.001 27.8 13.9 52 107-160 80-132 (215)
127 cd07652 F-BAR_Rgd1 The F-BAR ( 72.2 59 0.0013 27.5 18.6 120 106-226 62-212 (234)
128 cd07656 F-BAR_srGAP The F-BAR 69.0 72 0.0016 27.2 19.5 83 147-236 129-225 (241)
129 COG5391 Phox homology (PX) dom 67.9 51 0.0011 31.5 9.8 63 185-247 459-522 (524)
130 cd07686 F-BAR_Fer The F-BAR (F 67.9 76 0.0016 27.0 17.8 20 215-234 179-198 (234)
131 PRK10869 recombination and rep 65.2 1.3E+02 0.0029 28.9 17.6 55 104-159 260-316 (553)
132 PRK11546 zraP zinc resistance 62.5 44 0.00096 26.1 6.9 63 143-208 55-117 (143)
133 cd07605 I-BAR_IMD Inverse (I)- 61.7 98 0.0021 26.1 16.5 27 110-136 62-88 (223)
134 smart00787 Spc7 Spc7 kinetocho 58.6 1.1E+02 0.0023 27.3 9.6 62 136-200 205-266 (312)
135 cd07595 BAR_RhoGAP_Rich-like T 57.8 1.2E+02 0.0026 25.9 19.3 146 87-246 76-231 (244)
136 cd07679 F-BAR_PACSIN2 The F-BA 57.6 1.3E+02 0.0027 26.1 21.4 22 33-54 5-26 (258)
137 COG0497 RecN ATPase involved i 55.6 2E+02 0.0044 27.8 18.8 115 87-202 244-364 (557)
138 PF10234 Cluap1: Clusterin-ass 54.4 1.5E+02 0.0032 25.8 15.1 45 15-62 25-70 (267)
139 cd07601 BAR_APPL The Bin/Amphi 49.8 1.6E+02 0.0034 24.8 18.7 155 35-242 4-166 (215)
140 COG2882 FliJ Flagellar biosynt 48.6 1.3E+02 0.0029 23.6 10.0 68 106-173 24-109 (148)
141 cd07643 I-BAR_IMD_MIM Inverse 44.7 1.9E+02 0.0042 24.5 13.6 31 32-62 21-51 (231)
142 PF08359 TetR_C_4: YsiA-like p 43.7 74 0.0016 23.6 5.5 12 230-241 68-79 (133)
143 TIGR01069 mutS2 MutS2 family p 42.4 3.8E+02 0.0081 27.1 11.6 23 36-58 377-399 (771)
144 KOG1451|consensus 41.0 3.6E+02 0.0077 26.4 10.9 133 106-244 45-186 (812)
145 PF07200 Mod_r: Modifier of ru 40.1 1.7E+02 0.0037 22.5 14.5 124 97-236 22-145 (150)
146 cd07635 BAR_GRAF2 The Bin/Amph 38.4 2.3E+02 0.0051 23.6 16.4 97 138-243 67-168 (207)
147 KOG0976|consensus 38.2 3.6E+02 0.0078 27.5 10.1 76 137-218 90-165 (1265)
148 PF05276 SH3BP5: SH3 domain-bi 38.1 2.5E+02 0.0055 23.9 18.6 56 186-246 166-221 (239)
149 PF04065 Not3: Not1 N-terminal 37.4 2.6E+02 0.0056 23.8 9.0 88 149-237 8-95 (233)
150 KOG0979|consensus 36.5 5.2E+02 0.011 27.0 15.6 71 105-176 191-268 (1072)
151 PF13801 Metal_resist: Heavy-m 33.3 1.8E+02 0.0039 20.7 6.8 67 143-212 53-119 (125)
152 KOG2856|consensus 32.8 3.9E+02 0.0085 24.5 12.7 71 151-221 144-218 (472)
153 COG3105 Uncharacterized protei 32.5 1.4E+02 0.0031 22.9 5.3 52 185-240 39-91 (138)
154 cd07667 BAR_SNX30 The Bin/Amph 31.0 3.4E+02 0.0073 23.2 14.5 168 29-221 54-230 (240)
155 PF00509 Hemagglutinin: Haemag 31.0 30 0.00065 32.9 1.7 51 4-59 372-422 (550)
156 PF06730 FAM92: FAM92 protein; 30.9 3.3E+02 0.007 23.0 14.0 187 19-242 16-212 (219)
157 PF11453 DUF2950: Protein of u 30.8 64 0.0014 28.0 3.5 41 194-234 91-131 (271)
158 cd07648 F-BAR_FCHO The F-BAR ( 30.8 3.3E+02 0.0072 23.1 20.6 23 147-169 121-143 (261)
159 cd07674 F-BAR_FCHO1 The F-BAR 30.6 3.4E+02 0.0074 23.1 21.5 80 146-228 120-209 (261)
160 TIGR02680 conserved hypothetic 29.8 7.5E+02 0.016 26.8 19.8 22 151-172 278-299 (1353)
161 KOG3540|consensus 29.1 4.5E+02 0.0098 25.0 8.8 30 143-172 251-280 (615)
162 cd07625 BAR_Vps17p The Bin/Amp 28.8 3.6E+02 0.0078 22.8 12.3 149 10-164 79-230 (230)
163 cd07666 BAR_SNX7 The Bin/Amphi 28.4 3.8E+02 0.0082 22.9 16.9 33 29-61 57-89 (243)
164 cd07616 BAR_Endophilin_B1 The 28.3 3.7E+02 0.008 22.8 13.2 69 87-166 88-157 (229)
165 KOG0810|consensus 27.8 4.3E+02 0.0093 23.4 12.0 21 220-240 135-155 (297)
166 TIGR01837 PHA_granule_1 poly(h 27.3 1.2E+02 0.0025 22.8 4.1 43 10-52 70-115 (118)
167 PF05546 She9_MDM33: She9 / Md 26.5 3.8E+02 0.0083 22.3 12.4 56 118-173 15-70 (207)
168 PF08066 PMC2NT: PMC2NT (NUC01 26.4 1.7E+02 0.0038 20.6 4.7 58 5-62 30-87 (91)
169 PF13851 GAS: Growth-arrest sp 26.2 3.7E+02 0.008 22.1 10.2 37 135-172 59-95 (201)
170 PF05600 DUF773: Protein of un 26.0 5.1E+02 0.011 24.7 9.0 36 140-175 118-153 (507)
171 KOG2398|consensus 25.9 6.4E+02 0.014 24.8 16.9 82 126-213 116-197 (611)
172 cd05395 RasGAP_RASA4 Ras GTPas 25.8 4E+02 0.0086 24.0 7.9 122 36-158 141-280 (337)
173 PF03915 AIP3: Actin interacti 24.9 5.7E+02 0.012 23.8 14.2 56 128-192 232-287 (424)
174 KOG1247|consensus 24.8 2.3E+02 0.0049 26.6 6.1 44 4-47 396-440 (567)
175 PF08663 HalX: HalX domain; I 23.8 1.4E+02 0.003 20.3 3.6 27 31-57 34-60 (71)
176 PF10498 IFT57: Intra-flagella 23.6 3.9E+02 0.0084 24.3 7.4 111 4-129 235-348 (359)
177 PRK00409 recombination and DNA 23.2 7.9E+02 0.017 24.9 11.4 24 149-172 537-560 (782)
178 PF06476 DUF1090: Protein of u 22.8 3.3E+02 0.0072 20.3 7.5 43 90-132 48-90 (115)
179 PF07926 TPR_MLP1_2: TPR/MLP1/ 21.5 3.6E+02 0.0079 20.3 13.4 26 147-172 57-82 (132)
180 TIGR01069 mutS2 MutS2 family p 21.4 8.5E+02 0.019 24.6 12.1 6 105-110 482-487 (771)
181 PF04799 Fzo_mitofusin: fzo-li 21.3 4.4E+02 0.0096 21.3 8.9 69 113-196 98-167 (171)
182 PF04210 MtrG: Tetrahydrometha 21.3 1.1E+02 0.0025 20.7 2.7 23 32-54 11-33 (70)
183 TIGR00634 recN DNA repair prot 21.2 7.4E+02 0.016 23.8 18.0 31 104-134 265-295 (563)
184 PF15003 HAUS2: HAUS augmin-li 20.9 4.9E+02 0.011 22.7 7.1 42 206-247 101-147 (277)
185 KOG0972|consensus 20.8 6E+02 0.013 22.6 9.7 100 18-132 259-358 (384)
No 1
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=100.00 E-value=6.1e-62 Score=405.08 Aligned_cols=229 Identities=55% Similarity=0.959 Sum_probs=222.2
Q ss_pred HHHhhhhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHH
Q psy14114 17 QLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTE 96 (248)
Q Consensus 17 Q~~~Ek~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~ 96 (248)
|++.||+|++|+|++|+||.+|++++|.++.|+++|++.+..|+||||+.|++.++++|++++.|.+|+|.+.||++|++
T Consensus 1 q~~~EkiG~AE~Te~d~df~~l~~~~d~t~~~~~~i~~~t~~~LqPNp~~r~e~~~~~k~~~~~~~~~~~~~~Lg~~M~~ 80 (229)
T cd07616 1 QFTEEKFGQAEKTELDAHLENLLSKAECTKHWTEKIMKQTEVLLQPNPNARIEEFVYEKLDRKAPSRMNNPELLGQYMID 80 (229)
T ss_pred CcchhhccCccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHhccCCCCCChHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhc
Q psy14114 97 AGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKAR 176 (248)
Q Consensus 97 ~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak 176 (248)
+|.+||++|+||.||.+||+++.+||+++..|+..+.++|+.||+++++++|++|.++||+|+++|||||++|++++|++
T Consensus 81 ~g~~~g~~S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~kAk 160 (229)
T cd07616 81 AGNEFGPGTAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDLDAAKTRLKKAK 160 (229)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114 177 SLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNEL 246 (248)
Q Consensus 177 ~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l 246 (248)
+++.... ++++++.|+++|++++|.+...|.+|.+++++++.+|.+||+||+.||++|+++|.+|+..|
T Consensus 161 ~~~~~~~-~e~elr~ae~efees~E~a~~~m~~i~~~~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L~~~l 229 (229)
T cd07616 161 VAEARAA-AEQELRITQSEFDRQAEITRLLLEGISSTHAHHLRCLNDFVEAQMTYYAQCYQYMLDLQKQL 229 (229)
T ss_pred cchhhcc-hHHHHHHHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7665543 79999999999999999999999999999999999999999999999999999999999875
No 2
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=100.00 E-value=1.1e-61 Score=405.25 Aligned_cols=229 Identities=66% Similarity=1.060 Sum_probs=219.6
Q ss_pred HHHhhhhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHH
Q psy14114 17 QLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTE 96 (248)
Q Consensus 17 Q~~~Ek~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~ 96 (248)
||++||+|++|+|++|+||.+||+++|.++.|+++|++.+..|++|||+.|++.++++++++..|.+.+|.+.||++|++
T Consensus 1 Q~~~Ek~G~aEkTe~d~df~~le~~~d~~~~~~e~i~~~~~~~lqpNp~~r~~~~~~~k~~~~~~~~~~~~e~Lg~~M~~ 80 (229)
T cd07594 1 QFTEEKLGTAEKTEYDAHFENLLQRADKTKVWTEKILKQTEAVLQPNPNVRVEDFIYEKLDRKKPDRLSNLEQLGQAMIE 80 (229)
T ss_pred CcchhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999987777777788999999999
Q ss_pred hcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhc
Q psy14114 97 AGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKAR 176 (248)
Q Consensus 97 ~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak 176 (248)
+|.+||++|+||.||.+||+++.+||.++..|+..|.++|+.||+++++++|++|.++||+|+++|||||++|+|+++++
T Consensus 81 ~g~~lg~~S~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~k~r~~kAk 160 (229)
T cd07594 81 AGNDFGPGTAYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKERKLLENKRLDLDACKTRVKKAK 160 (229)
T ss_pred HHhhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114 177 SLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNEL 246 (248)
Q Consensus 177 ~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l 246 (248)
+++... .+++||+.|+++|++++|++...|.+|++++++++.+|.+||+||++||++|+++|.+|++.|
T Consensus 161 ~~~~~~-~~e~elr~Ae~kF~~~~E~a~~~M~~i~~~~~~~~~~L~~lv~AQl~Yh~q~~e~L~~l~~~l 229 (229)
T cd07594 161 SAEAIE-QAEQDLRVAQSEFDRQAEITKLLLEGISSTHANHLRCLRDFVEAQMTYYAQCYQYMDDLQRQL 229 (229)
T ss_pred Cccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 655321 289999999999999999999999999999999999999999999999999999999999875
No 3
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=100.00 E-value=1.3e-61 Score=399.43 Aligned_cols=220 Identities=61% Similarity=1.044 Sum_probs=215.0
Q ss_pred HHHhhhhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHH
Q psy14114 17 QLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTE 96 (248)
Q Consensus 17 Q~~~Ek~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~ 96 (248)
|++.||+|++|+|++|+||.+|++++|.++.|+++|++.+..|+||||+.|++.+++++++++.|++|+|.+.||++|++
T Consensus 1 Q~~~EkiG~AE~Teld~df~~l~~~~D~tk~~~~~i~~~t~~~LqPNp~~R~~~~~~~k~~~k~~~~~~~~~~Lg~~M~~ 80 (220)
T cd07617 1 QFTEEKLGQAEKTELDAHFENLLARADSTKNWTEKILRQTEVLLQPNPSARVEEFLYEKLDRKVPSRVTNAELLGQYMTE 80 (220)
T ss_pred CcchhhccCccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHhccCCCCCChHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhc
Q psy14114 97 AGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKAR 176 (248)
Q Consensus 97 ~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak 176 (248)
+|.++|++|+||.||..||+++.+||+++..|+..+.++|+.||++|++++|++|.++||+|+++|||||++|++++|
T Consensus 81 ~g~~~g~~s~~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~~k-- 158 (220)
T cd07617 81 AANDFGPGTPYGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKK-- 158 (220)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114 177 SLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNEL 246 (248)
Q Consensus 177 ~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l 246 (248)
+++||+.|+++|++++|.+...|.+|++++++++.+|.+||+||++||++|+++|.+|++.|
T Consensus 159 --------ae~elr~A~~kf~~~~E~a~~~M~~il~~~~e~l~~L~~lv~AQl~Yh~q~~e~L~~l~~~~ 220 (220)
T cd07617 159 --------AEHELRVAQTEFDRQAEVTRLLLEGISSTHVNHLRCLHEFVEAQATYYAQCYRHMLDLQKQL 220 (220)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35799999999999999999999999999999999999999999999999999999999875
No 4
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=100.00 E-value=1.1e-55 Score=365.71 Aligned_cols=212 Identities=27% Similarity=0.418 Sum_probs=203.4
Q ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHH---Hh--hhcCCCCCCchhHHHHHHHHhcccC
Q psy14114 27 EKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFE---KI--EKKRPSRLSNLEYLGLDMTEAGNAF 101 (248)
Q Consensus 27 ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~---k~--~~~~~~~~~~~~~Lg~~m~~~~~~~ 101 (248)
++|++|++|.+||+++|.++.|+++|++.+..|+||||+.|.+.++++ |+ +.+.|++|+|.+.||++|+++|.+|
T Consensus 1 ~~t~ld~~f~~le~k~D~t~~~~~~i~~~t~~~LQPNpa~r~k~~~~~~~~K~~g~~K~~~~p~~~~~Lg~~M~~~G~el 80 (223)
T cd07613 1 EGTKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGREL 80 (223)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhccccCCCCCChHhHHHHHHHHHHhhC
Confidence 579999999999999999999999999999999999999999999887 45 3467789999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhcccccc
Q psy14114 102 GPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGT 181 (248)
Q Consensus 102 ~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~ 181 (248)
|++|+||.||..||+|+.+||.++..|+..+.++|+.||++|++.+|++|.++||+|+++|||||++|+|+.++
T Consensus 81 g~dS~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~RKkLe~rRLd~D~~K~r~~k~------ 154 (223)
T cd07613 81 GDECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKI------ 154 (223)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999654
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14114 182 QSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 182 ~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l~ 247 (248)
.++|++.|+++|+++.|.+...|.+|++++++++.+|.+||+||+.||++|+++|++|++.|+
T Consensus 155 ---~eeElr~A~~kFees~E~a~~~M~n~l~~e~e~~~~L~~fveAQl~Yh~qa~eiL~~l~~~l~ 217 (223)
T cd07613 155 ---PDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQATQILQQVTVKLE 217 (223)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999985
No 5
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=100.00 E-value=2.8e-55 Score=364.17 Aligned_cols=212 Identities=25% Similarity=0.459 Sum_probs=204.4
Q ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhh-----cCCCCCCchhHHHHHHHHhcccC
Q psy14114 27 EKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEK-----KRPSRLSNLEYLGLDMTEAGNAF 101 (248)
Q Consensus 27 ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~-----~~~~~~~~~~~Lg~~m~~~~~~~ 101 (248)
++|++|++|.+||+++|.++.|+.+|++.+..|+||||+.|++.++++++++ +.|++|+|.+.||++|+++|.+|
T Consensus 1 ~~t~ld~~f~~le~~~d~t~~~~~~l~~~t~~~LqPNp~~R~~~~~~~~~~k~rg~~k~~~~p~~~~~Lg~~M~~~G~~l 80 (223)
T cd07614 1 EGTKLDDDFKEMEKKVDLTSKAVTEVLARTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQSEGLLGETMIRYGKEL 80 (223)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccccCCCCCChHhHHHHHHHHHHhhC
Confidence 5799999999999999999999999999999999999999999999988887 78899999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhcccccc
Q psy14114 102 GPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGT 181 (248)
Q Consensus 102 ~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~ 181 (248)
|++|+||.||.+||+++.+||+++..|+..|.++|+.||+++++.+|++|.++||+|+++|||||++|+++.+.
T Consensus 81 g~dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~k~------ 154 (223)
T cd07614 81 GDESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQHHLKKLEGRRLDFDYKKKRQGKI------ 154 (223)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988442
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14114 182 QSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 182 ~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l~ 247 (248)
.++|++.|+.+|++++|++...|.+|++++++++.+|.+||+||+.||++|+++|++|++.|.
T Consensus 155 ---~eeelr~a~ekFees~E~a~~~M~~il~~e~e~~~~L~~lveAQl~Yh~qa~eiL~~l~~~l~ 217 (223)
T cd07614 155 ---PDEELRQAMEKFEESKEVAETSMHNLLETDIEQVSQLSALVDAQLDYHRQAVQILDELAEKLK 217 (223)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999999999999885
No 6
>KOG3725|consensus
Probab=100.00 E-value=1.6e-55 Score=362.99 Aligned_cols=247 Identities=57% Similarity=0.946 Sum_probs=238.5
Q ss_pred CcchHhhHHHHHHHHHHHHhhhhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcC
Q psy14114 1 MKQFVKDAGSALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKR 80 (248)
Q Consensus 1 ~~~~~~~~~~~~~r~~Q~~~Ek~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~ 80 (248)
|||++.+||.+|.|+.|++.||+|++|+||+|..|..|-++.|.++.|+++|++.++.|+||||+.|++..+|+|++++.
T Consensus 5 ~KKlAsDAG~FfsRAvQfTEEkfgqAEkTELDaHfENLL~rAd~Tk~wTekil~qtEvlLQPNP~aR~EEf~YEKLdrK~ 84 (375)
T KOG3725|consen 5 FKKLASDAGGFFSRAVQFTEEKFGQAEKTELDAHFENLLQRADKTKDWTEKILSQTEVLLQPNPTARMEEFFYEKLDRKK 84 (375)
T ss_pred HHHHhhhcchHHHHHHHHhHHHhhhhhHhhHHHHHHHHHHHhhhhhHHHHHHHHhhheecCCCcchhHHHHHHHHHhccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhh
Q psy14114 81 PSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLES 160 (248)
Q Consensus 81 ~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~ 160 (248)
|++..+.+.||+.|.++|.+||+.+|||.+|.+|++++.+||.+.+++......+|+.||++||+.|++.|.+.||-|.+
T Consensus 85 psR~nN~ElL~qyM~dAg~efGptTpYG~aLiKvaetekrlG~AeReli~taa~nfLtPlRnFlEGD~KTI~KERklLqn 164 (375)
T KOG3725|consen 85 PSRQNNLELLSQYMTDAGEEFGPTTPYGSALIKVAETEKRLGQAERELIGTAATNFLTPLRNFLEGDMKTIQKERKLLQN 164 (375)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHhhcccccc------------ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHH
Q psy14114 161 KRLDLDSCKNRVRKARSLLGT------------QSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQ 228 (248)
Q Consensus 161 ~RLd~Daak~k~~kak~~~~~------------~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ 228 (248)
+|||+|+||++++|+|..+.. .+.++.|++.|+.+|+.+.|.++-.++.|.+.+..|++||.+||++|
T Consensus 165 kRLDLDAcKsRLKKAKaae~q~~rN~~~s~~~~ie~aEqelRvaQ~EFDrQaEiTrLLLEGIsstH~nhLrCL~dFVeaQ 244 (375)
T KOG3725|consen 165 KRLDLDACKSRLKKAKAAELQTVRNSKTSGGFTIEQAEQELRVAQAEFDRQAEITRLLLEGISSTHNNHLRCLRDFVEAQ 244 (375)
T ss_pred cccChHHHHHHHHHhhhhhhhccccccccCcchHhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999865431 11389999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q psy14114 229 VNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 229 ~~y~~~~~~~L~~l~~~l~ 247 (248)
+.||.+||.++-+||.+|.
T Consensus 245 mtyYAQcyq~MlDLQkqLg 263 (375)
T KOG3725|consen 245 MTYYAQCYQLMLDLQKQLG 263 (375)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999985
No 7
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=100.00 E-value=8e-55 Score=361.07 Aligned_cols=212 Identities=25% Similarity=0.421 Sum_probs=202.7
Q ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhh---c--CCCCCCchhHHHHHHHHhcccC
Q psy14114 27 EKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEK---K--RPSRLSNLEYLGLDMTEAGNAF 101 (248)
Q Consensus 27 ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~---~--~~~~~~~~~~Lg~~m~~~~~~~ 101 (248)
++|++|++|.+||+++|.++.|+++|++.+..|++|||+.|++.++++++++ . .|.+|.+.+.||++|+++|.+|
T Consensus 1 ~~T~ld~~f~~le~~~d~t~~~~~~l~~~t~~~LqpNP~~r~~~~~~~~~~k~~g~~k~~~~p~~~~~Lg~~M~~~G~~l 80 (223)
T cd07615 1 EGTKLDDDFQEMERKIDVTNKVVAELLSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLRYGREL 80 (223)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCCCCCchhHHHHHHHHHHhhC
Confidence 5799999999999999999999999999999999999999999999987765 3 5678888899999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhcccccc
Q psy14114 102 GPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGT 181 (248)
Q Consensus 102 ~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~ 181 (248)
|++|+||.||.+||+++.+||.++..|+..+.++|+.||++|++.+|++|.++||+|+++|||||++|+++.++
T Consensus 81 g~dS~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~K~r~~k~------ 154 (223)
T cd07615 81 GEESTFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDLKEIGHHLKKLEGRRLDFDYKKKRQGKI------ 154 (223)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988442
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14114 182 QSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 182 ~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l~ 247 (248)
.++|++.|+++|++++|.+...|.+|+++|++++..|..||+||++||++|+++|++|++.|.
T Consensus 155 ---~~eE~~~A~~kfees~E~a~~~M~n~le~e~e~~~~L~~lv~AQl~Yh~~a~eiL~~l~~~l~ 217 (223)
T cd07615 155 ---PDEEIRQAVEKFEESKELAERSMFNFLENDVEQVSQLSVLIEAALDYHRQSTEILEDLQSKLQ 217 (223)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999885
No 8
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=100.00 E-value=1.3e-53 Score=356.11 Aligned_cols=212 Identities=26% Similarity=0.458 Sum_probs=200.8
Q ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHH---HHHhhhcCCC--CCCchhHHHHHHHHhcccC
Q psy14114 27 EKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFL---FEKIEKKRPS--RLSNLEYLGLDMTEAGNAF 101 (248)
Q Consensus 27 ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~---~~k~~~~~~~--~~~~~~~Lg~~m~~~~~~~ 101 (248)
|+|++|+||.+||+++|.++.|+++|++.+..|+||||+.|.+.++ ++|+.+..+. +|+|.+.||++|.++|.+|
T Consensus 1 e~T~ld~df~~le~~~d~~~~~~~~l~~~~~~~lqpNP~~r~~~~~~~~~~K~~g~~~~~~~p~~~~~Lg~~M~~~g~el 80 (223)
T cd07592 1 EGTKLDDEFLEMERKTDATSKLVEDLIPKTKEYLQPNPAARAKLAMQNTYSKIRGQAKSTKYPQPEGLLGEVMLKYGREL 80 (223)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccCcccCCCCcccHHHHHHHHHHhhc
Confidence 6899999999999999999999999999999999999999999877 5677665544 7777899999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhcccccc
Q psy14114 102 GPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGT 181 (248)
Q Consensus 102 ~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~ 181 (248)
|++|+||.||..||+++.+||.++..|+..|.++|+.||+++++.+|++|.++||+|+++|||||++|+|+.|+
T Consensus 81 g~~S~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLdyD~~k~k~~k~------ 154 (223)
T cd07592 81 GEDSNFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHHRKKLEGRRLDYDYKKRKQGKG------ 154 (223)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987542
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14114 182 QSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 182 ~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l~ 247 (248)
+++|++.|+++|++++|++...|.+|++++++++.+|..||+||++||++|+++|.+|++.|.
T Consensus 155 ---~eeEl~~Ae~kfe~s~E~a~~~M~~il~~e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~ 217 (223)
T cd07592 155 ---PDEELKQAEEKFEESKELAENSMFNLLENDVEQVSQLSALVEAQLDYHRQSAEILEELQSKLQ 217 (223)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999985
No 9
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=1.5e-50 Score=339.61 Aligned_cols=217 Identities=20% Similarity=0.249 Sum_probs=200.1
Q ss_pred hhhcCccccc-CChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcc
Q psy14114 21 EKLGTSEKTE-LDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGN 99 (248)
Q Consensus 21 Ek~G~~ekTe-l~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~ 99 (248)
+++|++|+|+ |++||.++|+++|.++.|+++|++.+..|+||||+.|.+. . .+..|...||++|.++|.
T Consensus 2 ~~~g~aEkTe~ld~~~~~le~r~D~~k~~~~~i~kk~~~~LQpnp~~r~ek-----r-----~~k~P~~~L~q~M~~~g~ 71 (248)
T cd07619 2 QTVGRAEKTEVLSEDLLQVEKRLELVKQVSHSTHKKLTACLQGQQGVDADK-----R-----SKKLPLTTLAQCMVEGAA 71 (248)
T ss_pred CccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH-----h-----ccCCCHHHHHHHHHHHHH
Confidence 5799999999 5999999999999999999999999999999999999862 2 333457799999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhcc--
Q psy14114 100 AFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARS-- 177 (248)
Q Consensus 100 ~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~-- 177 (248)
++|++|+||.+|..||+++.+||+++..++..|.++|+.||+++++.+|++|.++||+|+++|||||++|++++.+.+
T Consensus 72 elg~~s~lg~aL~~~gea~~kla~a~~~~d~~i~~~fl~PL~~~le~dlk~I~k~RK~Le~~RLD~D~~K~r~~~a~~~~ 151 (248)
T cd07619 72 VLGDDSLLGKMLKLCGETEDKLAQELILFELQIERDVVEPLYVLAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQQSSKSS 151 (248)
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986542
Q ss_pred --------ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14114 178 --------LLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 178 --------~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l~ 247 (248)
...+.+.++++++.++++|+.+.|.+...|.+|++++.++...|.+||+||++||++|+++|+++.|.|+
T Consensus 152 ~~~~~~~~~~~k~e~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~ 229 (248)
T cd07619 152 GLSSNLQPTGAKADALREEMEEAANRMEICRDQLSADMYSFVAKEIDYANYFQTLIEVQAEYHRKSLELLQSVLPQIK 229 (248)
T ss_pred cccccccCCCCccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112223889999999999999999999999999999999999999999999999999999999999874
No 10
>KOG1118|consensus
Probab=100.00 E-value=2.6e-50 Score=338.83 Aligned_cols=229 Identities=27% Similarity=0.441 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHhhhhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHH---Hhhh--cCCCC
Q psy14114 9 GSALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFE---KIEK--KRPSR 83 (248)
Q Consensus 9 ~~~~~r~~Q~~~Ek~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~---k~~~--~~~~~ 83 (248)
.++|+++.||++||+|++++|.|||+|.+||++||.+..++.+|+..|..|++|||+.|....+.. |+.+ +.+.+
T Consensus 2 ~kqF~ka~Q~~sEK~ggae~TkLdDdF~eme~~vdvt~~~v~~i~~~tteylqpnpa~rakl~~~n~lsKvrG~~k~~~y 81 (366)
T KOG1118|consen 2 KKQFNKASQWTSEKVGGAEGTKLDDDFLEMEKEVDVTSKGVTKILAKTTEYLQPNPASRAKLAMLNTLSKVRGQVKEKGY 81 (366)
T ss_pred chHHHHHHHHhccccccccCCcCChHHHHHHHhHHHHHHHHHHHHHhhHHhcCCChhhhhHHHHHHHHHHhcccccCCCC
Confidence 579999999999999999999999999999999999999999999999999999999998876554 4443 44578
Q ss_pred CCchhHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhh
Q psy14114 84 LSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRL 163 (248)
Q Consensus 84 ~~~~~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RL 163 (248)
+.+...||.+|+++|.++|.+|.+|.+|..+|++..+||+.+.+++..++.+|++||+++...++++|..+||||+++||
T Consensus 82 pq~e~~Lg~~mik~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRl 161 (366)
T KOG1118|consen 82 PQTEGLLGDVMIKHGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRL 161 (366)
T ss_pred ccchhHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhh
Confidence 88899999999999999999999999999999999999999999999999999999999977799999999999999999
Q ss_pred hhHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 164 DLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLK 243 (248)
Q Consensus 164 d~Daak~k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~ 243 (248)
|||+.+.|..|.+ ++||++|..+||++.|.+...|++++++++|++.+|.+||.+|++||+++.++|..|+
T Consensus 162 dyD~kkkk~~K~~---------dEelrqA~eKfEESkE~aE~sM~nlle~d~eqvsqL~~Li~aqLdfhrqs~~iL~~l~ 232 (366)
T KOG1118|consen 162 DYDYKKKKQGKIK---------DEELRQALEKFEESKELAEDSMFNLLENDVEQVSQLSALIQAQLDFHRQSTQILQELQ 232 (366)
T ss_pred HHHHHHHHhccCC---------hHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998764 6799999999999999999999999999999999999999999999999999999998
Q ss_pred Hhh
Q psy14114 244 NEL 246 (248)
Q Consensus 244 ~~l 246 (248)
..+
T Consensus 233 ~~l 235 (366)
T KOG1118|consen 233 MKL 235 (366)
T ss_pred HHH
Confidence 765
No 11
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=100.00 E-value=8.4e-50 Score=338.23 Aligned_cols=217 Identities=19% Similarity=0.241 Sum_probs=202.6
Q ss_pred hhhcCccccc-CChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcc
Q psy14114 21 EKLGTSEKTE-LDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGN 99 (248)
Q Consensus 21 Ek~G~~ekTe-l~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~ 99 (248)
+++|++++|+ |++||.++|+++|.++.+++++++.+..|++|||+.+.+. |.+..|.+.||++|.++|.
T Consensus 2 ~~~g~a~k~e~l~d~~~~lE~~~d~~k~~~~~~~k~~~~~lq~n~~~~~ek----------r~rk~p~~~Lg~~M~~~g~ 71 (244)
T cd07595 2 QTVGRAEKTEVLSDELLQIEKRVEAVKDACQNIHKKLISCLQGQSGEDKDK----------RLKKLPEYGLAQSMLESSK 71 (244)
T ss_pred CccccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCCcHHHHhh----------hhccCcHHHHHHHHHHHHH
Confidence 5899999877 8999999999999999999999999999999999888763 3456689999999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhcccc
Q psy14114 100 AFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLL 179 (248)
Q Consensus 100 ~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~ 179 (248)
++|++|+||.||.+||.++.+||+++..++..|..+|+.||+++++.+|++|.++||+|+++|||||++|++++++++..
T Consensus 72 ~l~~~s~lg~~L~~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~ 151 (244)
T cd07595 72 ELPDDSLLGKVLKLCGEAQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAAHKSS 151 (244)
T ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999886432
Q ss_pred c------cccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14114 180 G------TQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 180 ~------~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l~ 247 (248)
+ +.+.+++|++.|+.+|++++|.+...|.+|+++|++++.+|.+||+||++||++|+++|+++.|.|+
T Consensus 152 ~~~~~~~K~~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~ 225 (244)
T cd07595 152 GGQGAAAKVDALKDEYEEAELKLEQCRDALATDMYEFLAKEAEIASYLIDLIEAQREYHRTALSVLEAVLPELQ 225 (244)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1123799999999999999999999999999999999999999999999999999999999999875
No 12
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=100.00 E-value=1.5e-49 Score=334.47 Aligned_cols=217 Identities=19% Similarity=0.249 Sum_probs=200.2
Q ss_pred hhhcCcccccC-ChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcc
Q psy14114 21 EKLGTSEKTEL-DAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGN 99 (248)
Q Consensus 21 Ek~G~~ekTel-~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~ 99 (248)
+|+|++|+|++ ++||.++|+++|.++.|+++|++.+..|+||||+.|.+. +. +..|.+.||++|.++|.
T Consensus 2 ~~~g~aekTe~~~~~~~~le~r~D~~k~~~~~i~k~~~~~lqpnp~~r~ek-----~~-----kk~p~~~Lgq~M~e~~~ 71 (246)
T cd07618 2 QTVGRAEKTEVLSEDLLQIERRLDTVRSVSHNVHKRLIACFQGQVGTDAEK-----RH-----KKLPLTALAQNMQEGSA 71 (246)
T ss_pred CccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH-----Hh-----ccCCHHHHHHHHHHHHh
Confidence 58999999994 889999999999999999999999999999999998753 22 22379999999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccc-
Q psy14114 100 AFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSL- 178 (248)
Q Consensus 100 ~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~- 178 (248)
++|++|+||.+|..||+++.+||+++.+++..|.++|+.||++|++.+|++|.++||+|+++|||||++|++++++...
T Consensus 72 ~lg~~s~~g~aL~~~gea~~kla~~~~~~d~~ie~~fl~PL~~~le~dlk~I~K~RkkLe~~RLD~D~~K~r~~~a~~~~ 151 (246)
T cd07618 72 QLGEESLIGKMLDTCGDAENKLAFELSQHEVLLEKDILDPLNQLAEVEIPNIQKQRKQLAKLVLDWDSARGRYNQAHKSS 151 (246)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhHHHHHHHHHhccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887521
Q ss_pred -------cccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14114 179 -------LGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 179 -------~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l~ 247 (248)
..+...+.+|++.|+.+|+.+.|.+...|.+++.++++++..|..||+||++||++|+++|+++.|.|+
T Consensus 152 ~~~~~~~~~K~~~l~ee~e~a~~k~E~~kD~~~~dm~~~l~~e~e~~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~ 227 (246)
T cd07618 152 GTNFQAMPSKIDMLKEEMDEAGNKVEQCKDQLAADMYNFASKEGEYAKFFVLLLEAQADYHRKALAVIEKVLPEIQ 227 (246)
T ss_pred ccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122688999999999999999999999999999999999999999999999999999999999875
No 13
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=100.00 E-value=4e-49 Score=327.12 Aligned_cols=207 Identities=24% Similarity=0.393 Sum_probs=192.0
Q ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhh--hcCCCCCCchhHHHHHHHHhcccCCCC
Q psy14114 27 EKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIE--KKRPSRLSNLEYLGLDMTEAGNAFGPG 104 (248)
Q Consensus 27 ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~--~~~~~~~~~~~~Lg~~m~~~~~~~~~~ 104 (248)
+||++|+||.+||+++|.++.++++|++++..|+++- +++. +...++..|.++||++|+.+|.++|++
T Consensus 1 ~kT~l~ddf~~le~~~d~~~~~~~~l~~~~~~y~~~l----------~k~~~~g~~k~k~~p~~~Lg~~M~~~g~~lg~d 70 (215)
T cd07593 1 QKTTLSEEFLELEKEIELRKEGMERLHRSTEAYVEYL----------SKKKPLLDDKDKCLPVEALGLVMINHGEEFPQD 70 (215)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hccCccccccccCChHHHHHHHHHHHHhhCCCC
Confidence 5899999999999999999999999999999998841 1111 112247779999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccc
Q psy14114 105 TTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSN 184 (248)
Q Consensus 105 s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~ 184 (248)
|+||.||.+||.++.+||.++..|+..+..+|+.||++++. ++++|.++||+|+++|||||++|++++|+++.+..
T Consensus 71 S~~G~aL~~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~-~~k~i~k~RKkLe~rRLdyD~~ksk~~kak~~~~~--- 146 (215)
T cd07593 71 SEYGSCLSKLGRAHCKIGTLQEEFADRLSDTFLANIERSLA-EMKEYHSARKKLESRRLAYDAALTKSQKAKKEDSR--- 146 (215)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh---
Confidence 99999999999999999999999999999999999999997 99999999999999999999999999999876543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14114 185 AERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 185 ~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l~ 247 (248)
+++||+.|+++|++++|++...|.+|++++++++.+|.+||+||++||++|+++|++|+..|+
T Consensus 147 ~eeElr~Ae~kfees~E~a~~~M~~i~~~e~e~~~~L~~lv~AQl~Yh~q~~e~L~~l~~~~~ 209 (215)
T cd07593 147 LEEELRRAKAKYEESSEDVEARMVAIKESEADQYRDLTDLLDAELDYHQQSLDVLREVRQSWP 209 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999999999999999999999999999999999999999886
No 14
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=1.6e-44 Score=301.30 Aligned_cols=215 Identities=19% Similarity=0.205 Sum_probs=197.4
Q ss_pred hcCc-ccccC-ChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhccc
Q psy14114 23 LGTS-EKTEL-DAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNA 100 (248)
Q Consensus 23 ~G~~-ekTel-~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~ 100 (248)
+|.+ |+||+ ++||.++|+++|.++.+++++++++..|+||||+.+.+.. .++.|...||++|.++|.+
T Consensus 3 ~~~~~e~te~L~edl~~iEkrvD~~k~~~~~i~kkl~~~LQpn~~~~aekr----------~kKlpe~~Ls~~M~es~ke 72 (257)
T cd07620 3 LSVSQDATELLTEDLVLVEQRVEPAKKAAQLIHKKLQGCLQSQPGLEAEKR----------MKKLPLMALSISMAESFKD 72 (257)
T ss_pred CCcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH----------hhhccHhHHHHHHHHHHhh
Confidence 5777 79998 9999999999999999999999999999999999988754 2334799999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccc--
Q psy14114 101 FGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSL-- 178 (248)
Q Consensus 101 ~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~-- 178 (248)
+|++|.+|.+|..||..+.+||+...+++..|+.+|+.||+.+++.|||+|.++||+|+++|||||++|+|+..+.+.
T Consensus 73 Lg~dS~lg~aLe~~~~~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e~dL~~I~k~rKkL~k~~LD~D~~K~R~~~a~k~s~ 152 (257)
T cd07620 73 FDAESSIRRVLEMCCFMQNMLANILADFEMKVEKDVLQPLNKLSEEDLPEILKNKKQFAKLTTDWNSAKSRSPQAAGRSP 152 (257)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHhHHhhHHHHHHHHHHhhcccc
Confidence 999999999998888888999999999999999999999999999999999999999999999999999999654221
Q ss_pred -----------------cccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 179 -----------------LGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQD 241 (248)
Q Consensus 179 -----------------~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~ 241 (248)
..+...+.+|++.|+.+|+++.|.+...|.+|+++|.+++..|..||++|++||++|+++|+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~kd~~~a~Mynfl~kE~e~a~~l~~lveaQ~~YHrqsl~~Le~ 232 (257)
T cd07620 153 RSGGRSEEVGEHQGIRRANKGEPLKEEEEECWRKLEQCKDQYSADLYHFATKEDSYANYFIRLLELQAEYHKNSLEFLDK 232 (257)
T ss_pred CCccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011112799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc
Q psy14114 242 LKNELS 247 (248)
Q Consensus 242 l~~~l~ 247 (248)
+.|.|.
T Consensus 233 ~l~~~~ 238 (257)
T cd07620 233 NITELK 238 (257)
T ss_pred HHHHHH
Confidence 999874
No 15
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=100.00 E-value=2.7e-40 Score=283.32 Aligned_cols=237 Identities=22% Similarity=0.308 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHhhhhcCc-ccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC----CCcc--hhHH---HHHHhhh
Q psy14114 9 GSALSRVVQLTEEKLGTS-EKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPN----PGNR--VEDF---LFEKIEK 78 (248)
Q Consensus 9 ~~~~~r~~Q~~~Ek~G~~-ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~n----p~~r--~~~~---~~~k~~~ 78 (248)
-++..|+.|+++|++|++ |+|+||+||.+||++||.++.+|.+|++++..|.++. |+.+ +.++ +.+|++.
T Consensus 3 ~p~a~~T~~~~qE~lG~v~diSeLP~eY~~LE~k~D~l~~~~~~~L~vt~~ye~esYDYP~n~~ESi~d~~~~i~~k~~~ 82 (289)
T PF10455_consen 3 QPFAQRTQQYVQEQLGQVDDISELPQEYLELEKKVDALKKVYKRLLKVTKTYENESYDYPPNLQESISDFSKTISSKVNQ 82 (289)
T ss_pred CcHHHHHHHHHHHHhCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHhHhcccCCCCCChhHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999 5999999999999999999999999999999987654 3332 2221 2333321
Q ss_pred ------c--------CC--CC---------------CC-chhHHHHHHHHhc---ccC----CCCCcHHHHHHHHHHHHH
Q psy14114 79 ------K--------RP--SR---------------LS-NLEYLGLDMTEAG---NAF----GPGTTYGTALIKVGQYEQ 119 (248)
Q Consensus 79 ------~--------~~--~~---------------~~-~~~~Lg~~m~~~~---~~~----~~~s~~g~aL~~~g~a~~ 119 (248)
. .| .. |. -.++|+.+...++ .++ +..++++.+|.+++.++.
T Consensus 83 l~~ass~~e~~~~l~~~~~~~~~~~~k~~~~~~~~~PKTl~~ALSraa~~ss~~l~~l~~~~~~~~~L~~aL~~~S~~~~ 162 (289)
T PF10455_consen 83 LSNASSPAEAQNILIGPPPAKEEKEEKPIQETSPSQPKTLYHALSRAALTSSEILEELKSSDEDEDPLSKALLKYSSAYE 162 (289)
T ss_pred HHhcCChhhccccccCCCccccccccccccccccCCCccHHHHHHHHHHHhHHHHHhcccCCCcccHHHHHHHHHHHHHH
Confidence 0 01 00 11 1356666666666 444 445899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHh-hccccccccchHHHHHHHHHHHHH
Q psy14114 120 KLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRK-ARSLLGTQSNAERDLRIAQSEFDR 198 (248)
Q Consensus 120 ~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~k-ak~~~~~~~~~e~el~~a~~~fe~ 198 (248)
+||++|.++|..|...|+.||..+|+.+|..++++||+|++.||+||++|++++. +++++.+. ++.+++.++++|+.
T Consensus 163 ~I~~aRL~qD~~I~~~Fn~~l~~~Ln~~~~~a~k~RkkV~~sRL~~D~~R~~~k~~~~pekee~--~r~~lE~aEDeFv~ 240 (289)
T PF10455_consen 163 KIAQARLEQDQLIQKEFNKKLQTTLNTDFKKANKARKKVENSRLQFDAARANLKNKAKPEKEEQ--LRVELEQAEDEFVS 240 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccCHH--HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988 66665444 88999999999999
Q ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy14114 199 QAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELSK 248 (248)
Q Consensus 199 ~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l~~ 248 (248)
++|+++..|.+|+++ ++++..|..||+||+.||+.|++.|+++.+.|+|
T Consensus 241 aTeeAv~~Mk~vl~~-~e~l~~Lk~lv~AQl~Yhk~aae~L~~~~~~l~~ 289 (289)
T PF10455_consen 241 ATEEAVEVMKEVLDN-SEPLRLLKELVKAQLEYHKKAAEALSELLKSLDK 289 (289)
T ss_pred HHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999 9999999999999999999999999999999986
No 16
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=2e-40 Score=279.69 Aligned_cols=208 Identities=24% Similarity=0.276 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCC----CCcchh--HH---HHHHhhh----c-----------CC-CCCCc---hh
Q psy14114 37 SLAGRSDVTKLWTEKIVGDTAAVLTPN----PGNRVE--DF---LFEKIEK----K-----------RP-SRLSN---LE 88 (248)
Q Consensus 37 ~lE~~~d~~k~~~~~l~k~~~~yl~~n----p~~r~~--~~---~~~k~~~----~-----------~~-~~~~~---~~ 88 (248)
+||++||.+|.+|++|++++..|.+.. |+.+.. ++ +++|+.. + .| +.+.| .+
T Consensus 2 ~Le~~~D~lk~~~~~~l~vt~~ye~esYDYP~n~~es~~~~~~~~~~k~~~l~~~t~~~e~~~~l~~~~~~~~~pkTl~~ 81 (242)
T cd07600 2 ELEQRVDALKLVYKKILKVTKTYENESYDYPPNLTESISDFSKTIGSKVSELSKATSPTEAQKVLLGTPAPAKLPKTLNH 81 (242)
T ss_pred cHHHHhhHHHHHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHhhHHHHHHHhhcCChhhhhhhhcCCCCCCCCCCcHHH
Confidence 699999999999999999999987643 444422 22 2233321 0 11 11112 47
Q ss_pred HHHHHHHHhcccCCC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhh
Q psy14114 89 YLGLDMTEAGNAFGP-----GTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRL 163 (248)
Q Consensus 89 ~Lg~~m~~~~~~~~~-----~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RL 163 (248)
+||++|..+|.+||+ +|+||.||..||.++.+||+++.++|..|.++|+.||+++|+++|++|.++||+|+++||
T Consensus 82 aLs~~m~~~~~~l~~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RL 161 (242)
T cd07600 82 ALSRAALASSLELKSLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRL 161 (242)
T ss_pred HHHHHHHHHHHHhCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 164 DLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLK 243 (248)
Q Consensus 164 d~Daak~k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~ 243 (248)
|||++|++++++++.+.. +.++.+++.|+++|+.++|.+...|.+|+++ ++++++|..||+||+.||++|+++|++|+
T Consensus 162 d~D~~K~~~~ka~~~~k~-~~~~~e~E~aEdef~~a~E~a~~~M~~il~~-~e~i~~L~~fv~AQl~Yh~~~~e~L~~l~ 239 (242)
T cd07600 162 QLDTARAELKSAEPAEKQ-EAARVEVETAEDEFVSATEEAVELMKEVLDN-PEPLQLLKELVKAQLAYHKTAAELLEELL 239 (242)
T ss_pred HHHHHHHHHHhccccccc-cchHHHHHHHHHHHHHhHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998654322 2289999999999999999999999999888 99999999999999999999999999999
Q ss_pred Hhh
Q psy14114 244 NEL 246 (248)
Q Consensus 244 ~~l 246 (248)
+.+
T Consensus 240 ~~~ 242 (242)
T cd07600 240 SVL 242 (242)
T ss_pred hcC
Confidence 864
No 17
>smart00721 BAR BAR domain.
Probab=100.00 E-value=6e-39 Score=272.65 Aligned_cols=230 Identities=34% Similarity=0.479 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHHhhhhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCch
Q psy14114 8 AGSALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNL 87 (248)
Q Consensus 8 ~~~~~~r~~Q~~~Ek~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~ 87 (248)
+.++|+|+.|+++|++|++++|++|+||.++|++++.++.++.+|++.++.|+||||+.+........ +.
T Consensus 2 ~~K~~~R~~q~~~ek~G~~e~T~~D~~f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~----------~~ 71 (239)
T smart00721 2 FKKQFNRAKQKVGEKVGKAEKTKLDEDFEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKK----------LS 71 (239)
T ss_pred ccchhHHHHHHHHHHhCCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHH----------HH
Confidence 46789999999999999999999999999999999999999999999999999999998876543322 34
Q ss_pred hHHHHHHHH--hcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhh
Q psy14114 88 EYLGLDMTE--AGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDL 165 (248)
Q Consensus 88 ~~Lg~~m~~--~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~ 165 (248)
..++..+.. .+.+++++++||.+|..||.++..+++++..+ ..+...|+.|+.+++..+|+++.++|++++++|+||
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDy 150 (239)
T smart00721 72 KSLGEVYEGGDDGEGLGADSSYGKALDKLGEALKKLLQVEESL-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDY 150 (239)
T ss_pred HHHHHHhcCCCCccccCchhHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHH
Confidence 666666665 57888999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccc-----cccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccch-hHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 166 DSCKNRVRKARSLLG-----TQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTS-HLRCLHEFVEAQVNYYANCHKIM 239 (248)
Q Consensus 166 Daak~k~~kak~~~~-----~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e-~~~~L~~lv~aQ~~y~~~~~~~L 239 (248)
|++++++.++++... +...++++++.|+.+|+...+++...|..+.+.+.+ +..+|.+||.+|+.||.+|++.|
T Consensus 151 D~~~~kl~~~~~~~~~~~~~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l 230 (239)
T smart00721 151 DSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLL 230 (239)
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987643311 222378999999999999999999999999999887 77799999999999999999999
Q ss_pred HHHHHhhcC
Q psy14114 240 QDLKNELSK 248 (248)
Q Consensus 240 ~~l~~~l~~ 248 (248)
++|.++|+.
T Consensus 231 ~~l~~~l~~ 239 (239)
T smart00721 231 QQLQQQLDK 239 (239)
T ss_pred HHHHHHhcC
Confidence 999999863
No 18
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=100.00 E-value=1.2e-32 Score=231.09 Aligned_cols=227 Identities=30% Similarity=0.405 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHhhhhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchh
Q psy14114 9 GSALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLE 88 (248)
Q Consensus 9 ~~~~~r~~Q~~~Ek~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~ 88 (248)
.++|+|+.|++.+|+|.+++|++|++|.+++++++.++..+.+|++.+..|+++++....... ....|.+
T Consensus 2 ~K~~~R~~q~~~~k~g~~~~t~~D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 71 (229)
T PF03114_consen 2 KKKINRAKQRVKQKLGKSEKTEIDEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQK----------NMKSPFE 71 (229)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------CHTHHHH
T ss_pred ChHHHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh----------hhhHHHH
Confidence 578999999999999999999889999999999999999999999999999997543322211 1124678
Q ss_pred HHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHH
Q psy14114 89 YLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSC 168 (248)
Q Consensus 89 ~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daa 168 (248)
.||.+|.+++.++++++++|.+|..||.+...|+.++..+...+..+|+.||.+++ .+++++.+.+++++++|+|||++
T Consensus 72 ~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~-~~~~~i~~~~kkr~~~~ldyd~~ 150 (229)
T PF03114_consen 72 ELADALIELGSEFSDDSSLGNALEKFGEAMQEIEEARKELESQIESTVIDPLKEFL-KEFKEIKKLIKKREKKRLDYDSA 150 (229)
T ss_dssp HHHHHHHHHHHCTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 59999999999999999999999
Q ss_pred HHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14114 169 KNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHL-RCLHEFVEAQVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 169 k~k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~-~~L~~lv~aQ~~y~~~~~~~L~~l~~~l~ 247 (248)
+.++.+++..+.... .+.+++.|+.+|+...+.+...|+.+...+.+++ ..|..||.+|..||+.++++|.++.|.|+
T Consensus 151 ~~k~~k~~~~~~~~~-~~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~~l~ 229 (229)
T PF03114_consen 151 RSKLEKLRKKKSKSS-KEEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQPQLA 229 (229)
T ss_dssp HHHHHHCHTTSSBTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999998764433221 2789999999999999999999999999989999 79999999999999999999999999884
No 19
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=99.90 E-value=9.1e-22 Score=162.02 Aligned_cols=203 Identities=16% Similarity=0.186 Sum_probs=167.4
Q ss_pred hhhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhccc
Q psy14114 21 EKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNA 100 (248)
Q Consensus 21 Ek~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~ 100 (248)
+|+|.++.| .|++|.+-|+++..+...+.+|++.++.|+.. .+.+.. ..-.++.+|.+.-.+
T Consensus 1 qK~g~~e~T-~D~~Fe~~e~rf~~le~~~~kL~Ke~K~Y~~a---v~~M~~--------------~q~~~se~l~e~Y~~ 62 (211)
T cd07612 1 QKLGKTVET-KDEQFEQCAMNLNMQQSDGNRLYKDLKAYLNA---VKVMHE--------------SSKRLSQTLQDIYEP 62 (211)
T ss_pred CCCCCCccc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--------------HHHHHHHHHHHHhCC
Confidence 589999998 99999999999999999999999999999884 332221 124567777776554
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhcc--c
Q psy14114 101 FGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARS--L 178 (248)
Q Consensus 101 ~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~--~ 178 (248)
.+....+-.++. .....+..+++.++..+++.||.+|+. .|++|++..+|++++.+|||++|+++++.+. .
T Consensus 63 ~~~~~~~~~~v~------e~~d~~~~~~~~~~~~~vL~pi~~~~s-~f~~i~~~i~KR~~KllDYD~~R~~~~kl~~k~~ 135 (211)
T cd07612 63 DWDGHEDLGAIV------EGEDLLWNDYEAKLHDQALRTMESYMA-QFPDVKERVAKRGRKLVDYDSARHHLEALQNAKK 135 (211)
T ss_pred CcCcccHHHHHH------hccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc
Confidence 332222222333 233568999999999999999999998 9999999999999999999999999987632 1
Q ss_pred --cccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy14114 179 --LGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDLKNELSK 248 (248)
Q Consensus 179 --~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~~~L~~l~~~l~~ 248 (248)
+.+...+++|++.|+..|+..++++...|+.+.+.+++++. +|.+||.+|..||.++..+..+|...|+|
T Consensus 136 kD~~KL~kAe~el~~Ak~~ye~lN~~L~~ELP~L~~~Ri~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~~~ 208 (211)
T cd07612 136 KDDAKIAKAEEEFNRAQVVFEDINRELREELPILYDSRIGCYVTVFQNISNLRDTFYKEMSKLNHDLYNVMKK 208 (211)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22223489999999999999999999999999999999999 99999999999999999999998877654
No 20
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=99.88 E-value=6.4e-21 Score=158.22 Aligned_cols=203 Identities=15% Similarity=0.161 Sum_probs=167.6
Q ss_pred hhhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhccc
Q psy14114 21 EKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNA 100 (248)
Q Consensus 21 Ek~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~ 100 (248)
+|+|.++.| .|++|.+.++++..+...+.+|++.++.|+.. .+.+.. ....+|.+|.+.-.+
T Consensus 1 ~k~g~~~~T-~D~~Fe~~e~~f~~~e~~~~kL~k~~K~Y~~a---v~~m~~--------------~q~~~~e~l~~lY~p 62 (211)
T cd07588 1 QKLGKADET-RDEVFDEHVNNFNKQQASANRLQKDLKNYLNS---VRAMKQ--------------ASKTLSETLKELYEP 62 (211)
T ss_pred CCCCCCCcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--------------HHHHHHHHHHHHhCC
Confidence 589999998 99999999999999999999999999999884 232211 134566666554443
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhc----
Q psy14114 101 FGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKAR---- 176 (248)
Q Consensus 101 ~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak---- 176 (248)
.+ + | -..++.+.......+.++...++.+|+.||..++. .|++|.+..+|++++.+|||++++++++..
T Consensus 63 ~~---~-~--~~~~~~v~e~~d~~~~~l~~~l~~~Vl~Pl~~~~s-~f~~i~k~I~KR~~KllDYDr~r~~~~kL~~K~~ 135 (211)
T cd07588 63 DW---P-G--REHLASIFEQLDLLWNDLEEKLSDQVLGPLTAYQS-QFPEVKKRIAKRGRKLVDYDSARHNLEALKAKKK 135 (211)
T ss_pred cc---c-c--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHhHHHHHHHHHHHHhccc
Confidence 22 1 1 13334455566788888999999999999999998 999999999999999999999999998653
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy14114 177 SLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDLKNELSK 248 (248)
Q Consensus 177 ~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~~~L~~l~~~l~~ 248 (248)
+++.+...++++++.|+..|+..++++...|+.+.+.+.+++. +|.+|+.+|..||.++..+..+|...+++
T Consensus 136 kde~KL~kae~el~~Ak~~Ye~lN~~L~~ELP~L~~~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~~~ 208 (211)
T cd07588 136 VDDQKLTKAEEELQQAKKVYEELNTELHEELPALYDSRIAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVMDG 208 (211)
T ss_pred ccHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1222223489999999999999999999999999999999999 99999999999999999999999887754
No 21
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.88 E-value=7.4e-21 Score=155.93 Aligned_cols=160 Identities=14% Similarity=0.161 Sum_probs=143.5
Q ss_pred hhHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhH
Q psy14114 87 LEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLD 166 (248)
Q Consensus 87 ~~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~D 166 (248)
...++.++.+.+..+..|...|.+|.+|+.+...|.+.+..+..+++..++.||.+|+..+++.+...||++++...+||
T Consensus 39 ~~~F~~~L~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d 118 (200)
T cd07639 39 SRAFVDGLCDLAHHGPKDPMMAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQLLVKEDLRGFRDARKEFERGAESLE 118 (200)
T ss_pred HHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHhhcchhHH
Confidence 47888899998887777778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 167 SCKNRVRKARSLLGT-QSNAERDLRIAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYYANCHKIMQDLKN 244 (248)
Q Consensus 167 aak~k~~kak~~~~~-~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~ 244 (248)
+|..|..+.++.++. ..+++.+|..++..|.++.=+++..+..+.. +..+++..|.+|+.||.+||.+||++|.++.|
T Consensus 119 ~al~K~~~~~k~k~~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq~kKkfefle~ll~~m~a~~tfF~qG~ell~~l~~ 198 (200)
T cd07639 119 AALQHNAETPRRKAQEVEEAAAALLGARATFRDRALDYALQINVIEDKKKFDILEFMLQLMEAQASFFQQGHEALSALHQ 198 (200)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999998776544332 1236779999999999999888888888877 48999999999999999999999999999998
Q ss_pred hh
Q psy14114 245 EL 246 (248)
Q Consensus 245 ~l 246 (248)
++
T Consensus 199 y~ 200 (200)
T cd07639 199 YR 200 (200)
T ss_pred cC
Confidence 74
No 22
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=99.88 E-value=1.6e-20 Score=154.66 Aligned_cols=202 Identities=14% Similarity=0.146 Sum_probs=161.4
Q ss_pred hhhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhccc
Q psy14114 21 EKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNA 100 (248)
Q Consensus 21 Ek~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~ 100 (248)
+|+|.+++| .|++|.+.|+++..+...+.+|++.++.|+.. .+.+.. ..-.++.+|.+.-.+
T Consensus 1 qK~g~~e~T-~D~~Fe~~errf~~lE~~~~kL~Ke~K~Y~da---v~~m~~--------------sq~~~se~l~e~Y~p 62 (211)
T cd07611 1 QKLGKADET-KDEQFEEYVQNFKRQETEGTRLQRELRAYLAA---IKGMQE--------------ASKKLTESLHEVYEP 62 (211)
T ss_pred CCCCCcccc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--------------HHHHHHHHHHHHhCC
Confidence 589999998 99999999999999999999999999999884 332221 135667777766554
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhcc---
Q psy14114 101 FGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARS--- 177 (248)
Q Consensus 101 ~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~--- 177 (248)
.+.+.. .+...+..+ ..+..+++..+...++.|+.+|+. .|++|++..+|++++.+|||++|++++|...
T Consensus 63 ~~~g~~---~~~~~~~~~---d~~~~dl~~~lv~~vl~P~~~~~s-~f~~I~~~I~KR~hKllDYD~~r~~~~kL~~k~~ 135 (211)
T cd07611 63 DWYGRD---DVKTIGEKC---DLLWEDFHQKLVDGALLTLDTYLG-QFPDIKNRIAKRSRKLVDYDSARHHLEALQTSKR 135 (211)
T ss_pred cccccc---hHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccc
Confidence 432221 122223222 246667777777779999999999 9999999999999999999999999987632
Q ss_pred -ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14114 178 -LLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 178 -~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~~~L~~l~~~l~ 247 (248)
++.+...+++|++.|+..|+..++.+...|+.+.+.++.++. +|.+|+.+|+.||.++..+=..|...++
T Consensus 136 kDe~KL~kAe~el~~Ak~~ye~lN~~Lk~ELP~L~~~Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~~~~~ 207 (211)
T cd07611 136 KDEGRIAKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEISVLCHKLYEVMT 207 (211)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222489999999999999999999999999999999999 9999999999999999988777766554
No 23
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.87 E-value=4.5e-20 Score=154.48 Aligned_cols=202 Identities=18% Similarity=0.236 Sum_probs=167.0
Q ss_pred cccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCC
Q psy14114 26 SEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGT 105 (248)
Q Consensus 26 ~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s 105 (248)
+++| .|.+|.+.++++..+...+.+|+|.++.|+.. .+.+.. ....|+.+|.+... ...++
T Consensus 5 ~~~T-~D~~fe~~~~rf~~lE~~~~kL~Ke~K~Y~da---v~~m~~--------------a~~~is~~l~~~~~-~~~~~ 65 (225)
T cd07590 5 LSKT-VDRELEREVQKLQQLESTTKKLYKDMKKYIEA---VLALSK--------------AEQRLSQDLASGPL-CEDND 65 (225)
T ss_pred cccC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--------------HHhHHHHHHHhccc-CCCCh
Confidence 3676 89999999999999999999999999999884 222211 12445555555321 22234
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhc--ccc----
Q psy14114 106 TYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKAR--SLL---- 179 (248)
Q Consensus 106 ~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak--~~~---- 179 (248)
.+..+...+..+...+......++.+++.+|+.||.+|+. .|++|++..+|++++.+|||+++++++|.. +.+
T Consensus 66 ~~~~~~e~y~~~~~~l~~~~~~~~~~~~~~vl~Pl~~~~s-~f~~I~~~I~KR~~Kl~DYD~~r~~~~kl~~K~~k~~~~ 144 (225)
T cd07590 66 ELRNLVEALDSVTTQLDKTVQELVNLIQKTFIEPLKRLRS-VFPSVNAAIKRREQSLQEYERLQAKVEKLAEKEKTGPNL 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccCChhH
Confidence 4555666777777778888899999999999999999999 999999999999999999999999998753 221
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14114 180 GTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 180 ~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~~~L~~l~~~l~ 247 (248)
.+...++++++.|+..|+..++.+...|+.+.+.+.+++. +|.+|+.+|+.||..++..+.+|++.++
T Consensus 145 ~KL~kae~el~~Ak~~ye~~N~~L~~ELP~l~~~r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d 213 (225)
T cd07590 145 AKLEQAEKALAAARADFEKQNIKLLEELPKFYNGRTDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLD 213 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2222478899999999999999999999999999999999 9999999999999999999999999876
No 24
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.87 E-value=2.6e-20 Score=153.85 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=141.6
Q ss_pred hhHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhH
Q psy14114 87 LEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLD 166 (248)
Q Consensus 87 ~~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~D 166 (248)
...++.++.+.+..+..|...|.+|.+||.+...|...+..+..+++..++.||.+|++.|++.+...||++++..-+||
T Consensus 39 ~~~F~~~L~~~~~~~~~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd 118 (200)
T cd07603 39 NSLFVNSLNDLSDYFRDDSLVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDLD 118 (200)
T ss_pred HHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 47888888888888877778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 167 SCKNRVRKARSLLGT-QSNAERDLRIAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYYANCHKIMQDLKN 244 (248)
Q Consensus 167 aak~k~~kak~~~~~-~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~ 244 (248)
++..|.-..++.++. ..++..+|..++..|..+.=+++..+..+.. +..+.+..|..|+.||.+||.+|+++++++.|
T Consensus 119 ~al~k~~~~~K~K~~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~kKk~e~le~ll~~~~A~~tff~qG~el~~dl~p 198 (200)
T cd07603 119 NALVKNAQAPRSKPQEAEEATNILTATRSCFRHTALDYVLQINVLQAKKRHEILSTLLSYMHAQFTFFHQGYDLLEDLEP 198 (200)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence 999996544333221 1126779999999999998888888877777 48999999999999999999999999999998
Q ss_pred hh
Q psy14114 245 EL 246 (248)
Q Consensus 245 ~l 246 (248)
++
T Consensus 199 y~ 200 (200)
T cd07603 199 YM 200 (200)
T ss_pred cC
Confidence 74
No 25
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.87 E-value=4.5e-20 Score=152.09 Aligned_cols=192 Identities=15% Similarity=0.172 Sum_probs=163.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHHHH
Q psy14114 31 LDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTA 110 (248)
Q Consensus 31 l~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~a 110 (248)
+..|..+||.+++.+-+.|..+++.++.|... ...++.++.+.+..+..|.....+
T Consensus 7 ~E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a------------------------~~~F~~~l~d~~~~~~gd~~i~~~ 62 (200)
T cd07637 7 VETDVVEIEAKLDKLVKLCSGMIEAGKAYATT------------------------NKLFVSGIRDLSQQCKKDEMISEC 62 (200)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHcCCchHHHHH
Confidence 45566777777777777777777777766552 367778888877777677889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhcccccc-ccchHHHH
Q psy14114 111 LIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGT-QSNAERDL 189 (248)
Q Consensus 111 L~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~-~~~~e~el 189 (248)
|.+||.+...|...+..+..+++..++.||.+|++.|+..+...||++++..-+||++..|...+++.++. ..++..+|
T Consensus 63 L~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~~~~k~kk~~~l~Ea~~~L 142 (200)
T cd07637 63 LDKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVKNAQAPRHKPHEVEEATSTL 142 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997655433331 22367899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114 190 RIAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNEL 246 (248)
Q Consensus 190 ~~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l 246 (248)
..++..|.++.=+++..+..+.. +..+.+..|..|+.||.+||.+||+++.++.|++
T Consensus 143 ~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~~~py~ 200 (200)
T cd07637 143 TITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHELDPYM 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccC
Confidence 99999999999888888888887 4899999999999999999999999999999874
No 26
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=99.86 E-value=6e-20 Score=154.46 Aligned_cols=206 Identities=17% Similarity=0.202 Sum_probs=162.6
Q ss_pred hhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccC
Q psy14114 22 KLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAF 101 (248)
Q Consensus 22 k~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~ 101 (248)
|+|.+++| .|++|.++++++..+...+.+|++.++.|+.. .+.... ....+|.++.+.-.+.
T Consensus 1 k~G~~e~T-~D~~F~~~e~~f~~~e~~~~kL~k~~k~y~da---~~~l~~--------------~q~~i~~~l~~lY~p~ 62 (224)
T cd07591 1 KTGQVERT-VDREFEFEERRYRTMEKASTKLQKEAKGYLDS---LRALTS--------------SQARIAETISSFYGDA 62 (224)
T ss_pred CCCccccc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--------------HHHHHHHHHHHhcCCC
Confidence 68999998 99999999999999999999999999999874 221111 1244555555543322
Q ss_pred CCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhc--cc
Q psy14114 102 GPGTTYGTALIKVGQYEQKLG-AAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKAR--SL 178 (248)
Q Consensus 102 ~~~s~~g~aL~~~g~a~~~ia-~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak--~~ 178 (248)
+..+. -..-..+..+...|. .+..+++.++..+|+.|+..++. .|+.+.+..+|++++++|||.+++++.+.. +.
T Consensus 63 ~~~~~-~~~~~~y~~~v~~l~~~~~~el~~~~~~~V~~Pl~~~~~-~~~~i~k~IkKR~~KllDYD~~~~k~~kl~~K~~ 140 (224)
T cd07591 63 GDKDG-AMLSQEYKQAVEELDAETVKELDGPYRQTVLDPIGRFNS-YFPEINEAIKKRNHKLLDYDAARAKVRKLIDKPS 140 (224)
T ss_pred CCccH-hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhhHHHHHHHHHhhHhhHHHHHHHHHHHHhccc
Confidence 21111 012223444444443 45667888899999999999998 999999999999999999999999998753 11
Q ss_pred --cccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14114 179 --LGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 179 --~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~~~L~~l~~~l~ 247 (248)
+.+...++++++.|+..|+...+.+...|+.+.+...+++. +|.+|+.+|++||...+..|.+++.+++
T Consensus 141 kd~~kL~kae~el~~a~~~Ye~lN~~Lk~ELP~l~~~r~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~~ 212 (224)
T cd07591 141 EDPTKLPRAEKELDEAKEVYETLNDQLKTELPQLVDLRIPYLDPSFEAFVKIQLRFFTEGYERLAQVQRYLD 212 (224)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 11222389999999999999999999999999999899998 8999999999999999999999999876
No 27
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.86 E-value=7.1e-20 Score=150.29 Aligned_cols=192 Identities=11% Similarity=0.125 Sum_probs=162.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHHHH
Q psy14114 31 LDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTA 110 (248)
Q Consensus 31 l~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~a 110 (248)
+..|..+||.+++.+-+.|..++...+.|.. ...+++.++.+.+...+.|...|.+
T Consensus 7 ~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~------------------------a~~~F~~~l~d~~~~~~~De~i~~~ 62 (200)
T cd07638 7 VEGDVAELELKLDKLVKLCIGMIDAGKAFCQ------------------------ANKQFMNGIRDLAQYSSKDAVIETS 62 (200)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH------------------------HHHHHHHHHHHHHHhCCcchhhHHH
Confidence 4556666666666666666666666666543 2478888888887777777889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccc-cccchHHHH
Q psy14114 111 LIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLG-TQSNAERDL 189 (248)
Q Consensus 111 L~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~-~~~~~e~el 189 (248)
|.+|+.+..+|.+.+..+..+++..++.||.+|++.|+.++...||++++...+||+|..|..+..+.++ +..+++.+|
T Consensus 63 l~kF~~~l~ei~~~~~~L~~q~~~~l~~~L~~F~k~dl~~vke~kk~FdK~s~~~~~aL~K~~~~~k~k~~e~eEa~~~l 142 (200)
T cd07638 63 LTKFSDTLQEMINYHTILFDQAQRSIKAQLQTFVKEDLRKFKDAKKQFDKVSEEKENALVKNAQVQRNKQHEVEEATNIL 142 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHhccCCcCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999876643222 112366799
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114 190 RIAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNEL 246 (248)
Q Consensus 190 ~~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l 246 (248)
..++..|.++.=+++..+..+.. +..+++..|..|+.||.+||.+||++|.++.|++
T Consensus 143 ~~~r~~F~~~~ldYv~~ln~vq~kKkfe~le~ll~~m~a~~tff~qG~el~~d~~py~ 200 (200)
T cd07638 143 TATRKCFRHIALDYVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDLFSELGPYM 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccC
Confidence 99999999999899989888888 4899999999999999999999999999999875
No 28
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.86 E-value=6.8e-20 Score=151.12 Aligned_cols=192 Identities=13% Similarity=0.181 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHH-----H
Q psy14114 35 FESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYG-----T 109 (248)
Q Consensus 35 ~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g-----~ 109 (248)
...+|..++.++..+.+|+|.++.|+.. .+ .......+++.+|.+.+.. .|++.. .
T Consensus 3 i~~~E~~~~~l~~~~~Kl~K~~~~~~~a---~~--------------~~~~a~~~Fa~~L~~f~~~--~dD~~~~a~gg~ 63 (202)
T cd07606 3 LQELEGSADELRDRSLKLYKGCRKYRDA---LG--------------EAYDGDSAFAESLEEFGGG--HDDPISVAVGGP 63 (202)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH---HH--------------HHHHHHHHHHHHHHHhcCC--CCChHHHhccch
Confidence 3456777777777777777777766542 00 0111246788888888753 445433 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccc-cc-cccchHH
Q psy14114 110 ALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSL-LG-TQSNAER 187 (248)
Q Consensus 110 aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~-~~-~~~~~e~ 187 (248)
+|.+|+.+...|++.+..+..+++..++.||.+|++.|++++...||++++...+||+|+.|..+.++. ++ ...++++
T Consensus 64 ~l~kF~~~l~ei~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k~~~~~ea~~ 143 (202)
T cd07606 64 VMTKFTSALREIGSYKEVLRSQVEHMLNDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAKPEILAAAEE 143 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999998765432 11 1113788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14114 188 DLRIAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNE 245 (248)
Q Consensus 188 el~~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~ 245 (248)
+|..++..|..+.=+++..+..+.. +..+++..|..|+.||.+||++||++|.++.|+
T Consensus 144 ~l~~~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~~l~py 202 (202)
T cd07606 144 DLGTTRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHLAFFKSGYELLRQLEPY 202 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999889988888887 589999999999999999999999999999874
No 29
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=99.86 E-value=1.4e-19 Score=147.29 Aligned_cols=186 Identities=24% Similarity=0.360 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCc--HHHHHHHHHHHHH
Q psy14114 42 SDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTT--YGTALIKVGQYEQ 119 (248)
Q Consensus 42 ~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~--~g~aL~~~g~a~~ 119 (248)
++.++..+.+|++.++.|.+..+ ........||.+|.+.|..+++.+. +|.+|..+|.+..
T Consensus 2 ~~~~~~~~~kl~k~~~~~~~~~~-----------------~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~ 64 (194)
T cd07307 2 LDELEKLLKKLIKDTKKLLDSLK-----------------ELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQK 64 (194)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHH
Confidence 45677778888888877766311 1222468999999999998876554 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhcccc---ccccchHHHHHHHHHHH
Q psy14114 120 KLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLL---GTQSNAERDLRIAQSEF 196 (248)
Q Consensus 120 ~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~---~~~~~~e~el~~a~~~f 196 (248)
.|+..+..+...+...|+.||..|++.+++.+.+.+|++++.|+|||+++.++.+.++.. .+...++.++..|+..|
T Consensus 65 ~l~~~~~~~~~~~~~~v~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y 144 (194)
T cd07307 65 ELEEFRDQLEQKLENKVIEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKY 144 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988999999999999999999999999998764321 11223788999999999
Q ss_pred HHHHHHHHHHHHhhhhccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 197 DRQAEITKLLLEGVQTSHT-SHLRCLHEFVEAQVNYYANCHKIMQDLKN 244 (248)
Q Consensus 197 e~~~e~~~~~m~~i~~~e~-e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~ 244 (248)
+.....+...|..+..... +....|..|+.+|..||.++++.++++.|
T Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~~ 193 (194)
T cd07307 145 EELREELIEDLNKLEEKRKELFLSLLLSFIEAQSEFFKEVLKILEQLLP 193 (194)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence 9999999999999888644 46779999999999999999999998876
No 30
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=99.85 E-value=3.9e-19 Score=148.11 Aligned_cols=162 Identities=15% Similarity=0.287 Sum_probs=142.5
Q ss_pred hhHHHHHHHHhcccC-CCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH-HHHhhHhhhhh
Q psy14114 87 LEYLGLDMTEAGNAF-GPGT-TYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIV-KERSLLESKRL 163 (248)
Q Consensus 87 ~~~Lg~~m~~~~~~~-~~~s-~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~-~~rkkl~~~RL 163 (248)
...++.++.+.|..+ ++++ ..|.+|.+||.+...|++.+..+..+++..++.||.+|++.|++.+. ..||++++.+.
T Consensus 39 ~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~El~~~~~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~ 118 (215)
T cd07604 39 ELQFAEALEKLGSKALSREEEDLGAAFLKFSVFTKELAALFKNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWK 118 (215)
T ss_pred HHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 467777887777655 3333 48999999999999999999999999999999999999999999997 99999999999
Q ss_pred hhHHHHHHHHhhccccccc----------cchHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHH
Q psy14114 164 DLDSCKNRVRKARSLLGTQ----------SNAERDLRIAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYY 232 (248)
Q Consensus 164 d~Daak~k~~kak~~~~~~----------~~~e~el~~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~ 232 (248)
|||.+.+++.+.++.+.+. .++.++|..++..|....=++...+..+.. ...+.+..|..|+.||++||
T Consensus 119 ~ye~~~~k~~k~Kk~~~~~~~~~r~e~~~~e~~~~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF 198 (215)
T cd07604 119 DYETKASKIEKEKKQLAKEAGMIRTEITGAEIAEEMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYF 198 (215)
T ss_pred HHHHHHHHHHhccchhhhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998877654422 125889999999999999888888888887 48999999999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q psy14114 233 ANCHKIMQDLKNELSK 248 (248)
Q Consensus 233 ~~~~~~L~~l~~~l~~ 248 (248)
++|+++|+++.|++.+
T Consensus 199 ~~G~~ll~~l~p~~~~ 214 (215)
T cd07604 199 QDGLKVIEHFRPYIEK 214 (215)
T ss_pred HHHHHHHHHHHhhhhc
Confidence 9999999999999863
No 31
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.85 E-value=4.5e-19 Score=147.11 Aligned_cols=192 Identities=11% Similarity=0.151 Sum_probs=156.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhccc----CCCCCcH
Q psy14114 32 DAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNA----FGPGTTY 107 (248)
Q Consensus 32 ~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~----~~~~s~~ 107 (248)
..|-.+|+.+++.+-+.|..++..++.|... ...++.++.+.+.. ..+|...
T Consensus 8 E~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A------------------------~~~F~~~L~ef~~~~f~~~~dDe~~ 63 (215)
T cd07601 8 EEDALQLSSYMNQLLQACKRVYDAQNELKSA------------------------TQALSKKLGEYEKQKFELGRDDEIL 63 (215)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHhhccCCCCCcHHH
Confidence 4455555555555555555555555554332 36778888887543 3344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccc-cc--cc
Q psy14114 108 GTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLG-TQ--SN 184 (248)
Q Consensus 108 g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~-~~--~~ 184 (248)
+.+|.+|+.+..+|++.+..+..+++..++.||.+|++.|++++...||++++..-+||+|+.|.-+.++.++ +. .+
T Consensus 64 ~~~l~kFs~~l~El~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k~k~~~~~~~E 143 (215)
T cd07601 64 VSTLKQFSKVVDELSTMHSTLSSQLADTVLHPISQFMESDLAEIMTLKELFKAASNDHDGVLSKYSRLSKKRENTKVKIE 143 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCCchHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999876544322 11 13
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhc
Q psy14114 185 AERDLRIAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYYANCHKIMQ-DLKNELS 247 (248)
Q Consensus 185 ~e~el~~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~~~~~~~L~-~l~~~l~ 247 (248)
++++|..++..|..+.=+++..+..+.. +..+.+..|..|+.||.+||++|+++|+ ++.|++.
T Consensus 144 a~~~l~~~R~~F~~~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~~~~~pf~~ 208 (215)
T cd07601 144 VNDEVYACRKKQHQTAMNYYCALNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEEFLS 208 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999889988888877 4899999999999999999999999998 9998863
No 32
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=99.85 E-value=7.2e-19 Score=143.24 Aligned_cols=194 Identities=15% Similarity=0.235 Sum_probs=165.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccC--CCCCcHH
Q psy14114 31 LDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAF--GPGTTYG 108 (248)
Q Consensus 31 l~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~--~~~s~~g 108 (248)
+++-+..++.+++.+++.|..|+.++..|+.. ...+..++.+.|..+ .++...|
T Consensus 7 ~ee~l~~~e~~L~Kl~K~~kam~~SG~~yv~n------------------------~~~f~~~l~~Lg~~~~~~dd~~i~ 62 (215)
T cd07641 7 LEEALDQDRTALQKVKKSVKAIYNSGQDHVQN------------------------EENYAQALDKFGSNFLSRDNPDLG 62 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHhhccCCchhHH
Confidence 56778889999999999999999999999874 355666666666655 5677899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH-HHHhhHhhhhhhhHHHHHHHHhhcccccccc----
Q psy14114 109 TALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIV-KERSLLESKRLDLDSCKNRVRKARSLLGTQS---- 183 (248)
Q Consensus 109 ~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~-~~rkkl~~~RLd~Daak~k~~kak~~~~~~~---- 183 (248)
.||.+|+.....+.+....+.+++++.+.-||.+|+..|++.+. ..||.+++..-|||++..|+.++++...+..
T Consensus 63 ~a~~kfs~~~~El~~~~k~L~~~~~~~v~~~L~~flK~Dlr~~K~d~KK~FdK~~kDye~k~~K~ek~~r~~~K~~e~~r 142 (215)
T cd07641 63 TAFVKFSTLTKELSTLLKNLLQGLSHNVIFTLDSLLKGDLKGVKGDLKKPFDKAWKDYETKFTKIEKEKREHAKQHGMIR 142 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHhhhhhhcCcccchh
Confidence 99999999999999999999999999999999999999999999 9999999999999999999987765211111
Q ss_pred ------chHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy14114 184 ------NAERDLRIAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELSK 248 (248)
Q Consensus 184 ------~~e~el~~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l~~ 248 (248)
++.++++..+.-|....=++.-....+.. ..++.+..|.+|+.||.+||++++++++++.|++.|
T Consensus 143 ~e~~~~Eaa~~l~~~Rr~Fq~~a~dYllqin~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~~~~l~py~k~ 214 (215)
T cd07641 143 TEITGAEIAEEMEKERRLFQLQMCEYLIKVNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKTADKLKQYIEK 214 (215)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36678999999999887555555544444 489999999999999999999999999999999875
No 33
>KOG3771|consensus
Probab=99.83 E-value=5e-19 Score=158.26 Aligned_cols=219 Identities=19% Similarity=0.186 Sum_probs=184.3
Q ss_pred hHhhHHHHHHHHHHHHhhhhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCC
Q psy14114 4 FVKDAGSALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSR 83 (248)
Q Consensus 4 ~~~~~~~~~~r~~Q~~~Ek~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~ 83 (248)
|.....+.++|+.+.+.+|+|.+++| .|++|.+-++++..+...+.+|.+.++.|+.. .+.+..
T Consensus 2 ~~k~~kKa~sRa~ekvlqk~g~~~~T-kD~~FE~~~~~f~~~e~e~~kLqkd~k~y~~a---v~am~~------------ 65 (460)
T KOG3771|consen 2 SAKGVQKALNRAPEKVLQKLGKVDET-KDEQFEQEERNFNKQEAEGKRLQKDLKNYLDA---VRAMLA------------ 65 (460)
T ss_pred cchhhHHHhccccHHHHhhcCCcccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH------------
Confidence 34556788999999999999999998 99999999999999999999999999999873 333221
Q ss_pred CCchhHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhh
Q psy14114 84 LSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRL 163 (248)
Q Consensus 84 ~~~~~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RL 163 (248)
....|..+|.+.-...+.+..|+.+..... .....+++..+..+++.||.+|+. .|++|.+...|+.++.+
T Consensus 66 --a~~~l~e~l~eiy~p~~~g~~~l~~v~~~~------d~l~~d~~~~l~d~vl~pl~~~~~-~fpdik~~i~KR~~Kl~ 136 (460)
T KOG3771|consen 66 --ASKKLAESLQEIYEPDWPGRDYLQAVADND------DLLWKDLDQKLVDQVLLPLDTYLG-QFPDIKKAIAKRGRKLV 136 (460)
T ss_pred --HHHHHHHHHHHhcCcccccHHHHHHHHHHH------HHHHHHHHHHHHHhhhhhHHHhhh-hchhHHHHHHhhcchhh
Confidence 135677777777666666667777665544 677889999999999999999999 99999999999999999
Q ss_pred hhHHHHHHHHh---hc-cccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHH---
Q psy14114 164 DLDSCKNRVRK---AR-SLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANC--- 235 (248)
Q Consensus 164 d~Daak~k~~k---ak-~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~--- 235 (248)
|||++|+++.+ ++ +++.+...+++|++.|+..||.-+.++...|..+.+.++.++. .|..|+.+|+.||...
T Consensus 137 DyD~~r~~~~kvq~~k~kd~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl~~~q~vf~~Emskl 216 (460)
T KOG3771|consen 137 DYDSARHSFEKLQAKKKKDEAKLAKAEEELEKAQQVFEELNNELLEELPALYSSRVGFFVPTFQSLFNLQLVFHKEMSKL 216 (460)
T ss_pred hhHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 99999966553 33 2222222389999999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHhhc
Q psy14114 236 HKIMQDLKNELS 247 (248)
Q Consensus 236 ~~~L~~l~~~l~ 247 (248)
|..|.+++..|.
T Consensus 217 ~~~L~~v~~kl~ 228 (460)
T KOG3771|consen 217 YKNLYDVLDKLF 228 (460)
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 34
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=99.83 E-value=1.8e-18 Score=141.66 Aligned_cols=183 Identities=16% Similarity=0.225 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhccc--CCCCCcHHHHHHHHHHHHH
Q psy14114 42 SDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNA--FGPGTTYGTALIKVGQYEQ 119 (248)
Q Consensus 42 ~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~--~~~~s~~g~aL~~~g~a~~ 119 (248)
+-.+|+.+..|+.++..|+.. ...+..++.+.|.. +.+|...|.+|.+||.++.
T Consensus 18 l~~~kk~~k~~~~sG~~yv~~------------------------~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~ 73 (215)
T cd07642 18 LYKMKKSVKAIHTSGLAHVEN------------------------EEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTK 73 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHH
Confidence 345777788888888887664 35666666666664 4567789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH-HHHhhHhhhhhhhHHHHHHHHhhcc--ccccc--------cchHHH
Q psy14114 120 KLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIV-KERSLLESKRLDLDSCKNRVRKARS--LLGTQ--------SNAERD 188 (248)
Q Consensus 120 ~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~-~~rkkl~~~RLd~Daak~k~~kak~--~~~~~--------~~~e~e 188 (248)
+|......+.++++.++..||.+|++.|++.+. ..||.+++.|-|||++.++..++++ .++.. .++.++
T Consensus 74 El~~l~~~L~~~~~~~I~~pl~s~lK~dLr~vK~d~KK~fdK~~~dyE~~~~k~ek~~r~~~K~~~~~~~e~~~~E~ae~ 153 (215)
T cd07642 74 ELTALFKNLVQNMNNIITFPLDSLLKGDLKGVKGDLKKPFDKAWKDYETKVTKIEKEKKEHAKMHGMIRTEISGAEIAEE 153 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccchhccchhhHHHH
Confidence 999999999999999999999999999999996 8999999999999999998877654 22211 125678
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy14114 189 LRIAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELSK 248 (248)
Q Consensus 189 l~~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l~~ 248 (248)
+..++..|....=++.-.+..+.. ..++.+..+.+|+.||.+||++|++.|++|.|+++|
T Consensus 154 l~~~R~~fq~~a~dYv~~in~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~~~ 214 (215)
T cd07642 154 MEKERRFFQLQMCEYLLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSIEK 214 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999988777767777666 479999999999999999999999999999999875
No 35
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=99.82 E-value=2.3e-18 Score=141.77 Aligned_cols=195 Identities=12% Similarity=0.221 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccC-C---CCC--cHH
Q psy14114 35 FESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAF-G---PGT--TYG 108 (248)
Q Consensus 35 ~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~-~---~~s--~~g 108 (248)
..+.|..++.+...+++|+|.++.++..- + .+......++.++.+.+-++ | .|+ ..+
T Consensus 4 l~~~E~ele~l~~~ikkLiK~ck~~i~a~---k--------------~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~ 66 (207)
T cd07602 4 LHEHEAELERTNKAIKELIKECKNLISAT---K--------------NLSKAQRSFAQTLQNFKFECIGETQTDDEIEIA 66 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--------------HHHHHHHHHHHHHHHHHhhccCCcCcccHHHHH
Confidence 44566666666666666666666665520 0 01112367777777776443 1 222 579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhcccc-c-cccchH
Q psy14114 109 TALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLL-G-TQSNAE 186 (248)
Q Consensus 109 ~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~-~-~~~~~e 186 (248)
.+|.+||.+...|.+.+..+..+++..++.||.+|.+.++..+...||++++...+||+|+.|.-..++.+ + ....++
T Consensus 67 ~~L~kF~~~l~ei~~~r~~L~~q~~~~l~~pL~~F~k~dl~~~ke~kk~FdK~se~~~~al~k~~~lsk~kk~~~~~ea~ 146 (207)
T cd07602 67 ESLKEFGRLIETVEDERDRMLENAEEQLIEPLEKFRKEQIGGAKEEKKKFDKETEKFCSSLEKHLNLSTKKKENQLQEAD 146 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999976443222 1 112388
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114 187 RDLRIAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNEL 246 (248)
Q Consensus 187 ~el~~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l 246 (248)
.+|..++..|.+..=+++..+..+.. +..+++..|..|+.||++||.+|++++.++.|++
T Consensus 147 ~~l~~~r~~f~~~~l~Yv~~l~~vq~rKkfefle~ll~~m~a~~tff~qG~el~~d~~py~ 207 (207)
T cd07602 147 AQLDMERRNFHQASLEYVFKLQEVQERKKFEFVETLLSFMYGWLTFYHQGHEVAKDFKPYL 207 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccC
Confidence 89999999999999899989988888 4899999999999999999999999999999875
No 36
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=99.80 E-value=5.4e-18 Score=139.32 Aligned_cols=195 Identities=11% Similarity=0.154 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCC------cH
Q psy14114 34 HFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGT------TY 107 (248)
Q Consensus 34 e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s------~~ 107 (248)
.....|..+|.+.+.|.+|+|.++.|+..- + .+......++.++.+.+-.+-.+. ..
T Consensus 3 ~l~~~E~~le~~~k~ik~liK~~k~~i~A~---k--------------~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I 65 (207)
T cd07636 3 RLKSHEAELDKTNKFIKELIKDGKSLIAAL---K--------------NLSSAKRKFADSLNEFKFQCIGDAETDDEICI 65 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--------------HHHHHHHHHHHHHHHHHhhcCCCcccccHHHH
Confidence 467899999999999999999999987731 0 111124677888887774432222 36
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhc-cccc-cccch
Q psy14114 108 GTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKAR-SLLG-TQSNA 185 (248)
Q Consensus 108 g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak-~~~~-~~~~~ 185 (248)
..+|.+|+.+...|.+.+..+..+++..++.||.+|...+|..+...||++++..-+||+|+.|.-.++ +.++ ...++
T Consensus 66 ~~~L~kF~~~L~ei~~~r~~L~~qa~~~l~~~L~~F~kedi~~~Ke~kK~FdK~se~~~~al~k~~~ls~k~K~~~~eEA 145 (207)
T cd07636 66 ARSLQEFAAVLRNLEDERTRMIENASEVLITPLEKFRKEQIGAAKEAKKKYDKETEKYCAVLEKHLNLSSKKKESQLHEA 145 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHHHhcCcccCCchHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999987643 2122 22237
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14114 186 ERDLRIAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNE 245 (248)
Q Consensus 186 e~el~~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~ 245 (248)
+..|...+..|.+..=+++..+..+.+ +..+++..|.+|+.+|++||.+||++++++.|+
T Consensus 146 ~~~L~~~r~~F~~~sLdYV~qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~~y 206 (207)
T cd07636 146 DSQVDLVRQHFYEVSLEYVFKVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFSDF 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 889999999999998888888888887 489999999999999999999999999999886
No 37
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=99.79 E-value=1.1e-17 Score=137.35 Aligned_cols=195 Identities=10% Similarity=0.140 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCC----CC--cHH
Q psy14114 35 FESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGP----GT--TYG 108 (248)
Q Consensus 35 ~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~----~s--~~g 108 (248)
+..-|..+|.+.+.+++|+|.++.|+.. .+ .+......++.++.+.+.++-. |+ ..+
T Consensus 4 l~~~e~~l~~t~~~ik~liK~c~~li~A---~k--------------~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~ 66 (207)
T cd07634 4 LQCHEIELERTNKFIKELIKDGSLLIGA---LR--------------NLSMAVQKFSQSLQDFQFECIGDAETDDEISIA 66 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--------------HHHHHHHHHHHHHHHHHhhccCCcccccHHHHH
Confidence 3455778888888888888888887663 10 1111246777888877755422 23 489
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhcccc-c-cccchH
Q psy14114 109 TALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLL-G-TQSNAE 186 (248)
Q Consensus 109 ~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~-~-~~~~~e 186 (248)
.+|..|+.....|.+.+..+.++++..++.||.+|+..+|+.+...||++++...+||+++.|....++.+ + ...+++
T Consensus 67 ~~l~~Fs~~l~el~~~~~~L~~~~~~~l~~pL~~f~k~dl~~vKe~kK~FDK~se~y~~aleK~l~l~~~kk~~~~~ea~ 146 (207)
T cd07634 67 QSLKEFARLLIAVEEERRRLIQNANDVLIAPLEKFRKEQIGAAKDGKKKFDKESEKYYSILEKHLNLSAKKKESHLQRAD 146 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHhHHHHHHHHHHhccccCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999976443322 1 122388
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114 187 RDLRIAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNEL 246 (248)
Q Consensus 187 ~el~~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l 246 (248)
++|..++..|..+.=+++..+..+.. +..+++..|.+|+.||++||.+||++++++.|+.
T Consensus 147 ~~l~~~R~~F~~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~py~ 207 (207)
T cd07634 147 TQIDREHQNFYEASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFAPYK 207 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCC
Confidence 89999999999998888888888887 4899999999999999999999999999998863
No 38
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=99.78 E-value=1.4e-17 Score=136.88 Aligned_cols=195 Identities=9% Similarity=0.159 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccC-----C-CCCcH
Q psy14114 34 HFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAF-----G-PGTTY 107 (248)
Q Consensus 34 e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~-----~-~~s~~ 107 (248)
-....|.++|.+.+.+++|+|.++.|+... + .......+++.++.+.+-++ . +....
T Consensus 3 ~~~~~e~~le~~~k~i~kLiK~c~~~i~a~---k--------------~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i 65 (207)
T cd07635 3 RIRAHEAELERTNRFIKELLKDGKNLIAAT---K--------------SLSAAQRKFAHSLRDFKFEFIGDAETDDERCI 65 (207)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--------------HHHHHHHHHHHHHHHHHhhcCCCcccchhHHH
Confidence 356789999999999999999999987741 1 01112356777777766433 1 12235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhc--cccccccch
Q psy14114 108 GTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKAR--SLLGTQSNA 185 (248)
Q Consensus 108 g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak--~~~~~~~~~ 185 (248)
|.+|..|+.++..|.+.+..+..+++..++.||.+|...+|..+...||++++..-+||+|..|.-+.+ +.+++..++
T Consensus 66 ~~sl~ef~~~~~el~d~r~~L~~~~~~~l~~pL~~F~kedl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~~e~~EA 145 (207)
T cd07635 66 DASLQEFSNFLKNLEEQREIMALNVTETLIKPLERFRKEQLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKKKEPQLQEA 145 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCccHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999965432 122222247
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14114 186 ERDLRIAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNE 245 (248)
Q Consensus 186 e~el~~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~ 245 (248)
+..|..++..|.+..=+++..+..+.. +..+++..|.+|+.||++||.+|+++++++.|+
T Consensus 146 ~~~l~~~r~~F~~~sLdYv~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~~y 206 (207)
T cd07635 146 DVQVEQNRQHFYELSLEYVCKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDFNHY 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 889999999999999888888888888 489999999999999999999999999999886
No 39
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.76 E-value=2.4e-16 Score=128.26 Aligned_cols=191 Identities=10% Similarity=0.070 Sum_probs=155.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCc-----
Q psy14114 32 DAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTT----- 106 (248)
Q Consensus 32 ~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~----- 106 (248)
..|...++++++.+-+.|..|+..++.|... ...++.++.+.+-++-.+..
T Consensus 8 E~ele~~~~~IkkliK~~~~li~a~K~~s~A------------------------~r~Fa~~L~df~f~~igd~~tdde~ 63 (207)
T cd07633 8 EQELERTNKFIKDVIKDGNALISAIKEYSSA------------------------VQKFSQTLQSFQFDFIGDTLTDDEI 63 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHhhcCCCcccchHH
Confidence 3466667777777777777777777666442 35677777777666644554
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccc-cc-ccc
Q psy14114 107 -YGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSL-LG-TQS 183 (248)
Q Consensus 107 -~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~-~~-~~~ 183 (248)
.+.+|.+||.....|.+.+..+.++.+.+++.||++|...+|+.+...||++++.+-+||+|..|...+.+. ++ +..
T Consensus 64 ~I~~sL~~F~~~L~~ie~~r~~l~d~aq~s~~~~L~~F~Kedi~~~Ke~KK~FdK~se~~~~aL~k~a~~s~k~K~~e~e 143 (207)
T cd07633 64 NIAESFKEFAELLQEVEEERMMMVQNASDLLIKPLENFRKEQIGFTKERKKKFEKDSEKFYSLLDRHVNLSSKKKESQLQ 143 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhcccccCCchHHH
Confidence 889999999999999999999999999999999999999999999999999999999999999998766322 22 112
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114 184 NAERDLRIAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNEL 246 (248)
Q Consensus 184 ~~e~el~~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l 246 (248)
++...|...+..|.+..=+++..+..+.+ +..+++..|.+|+.+|.+||.+|++++.++.|+.
T Consensus 144 EA~~~L~~~r~~F~~~aLdYV~qI~~vQerKKfeive~mLsf~~a~~tf~hqG~el~~df~~y~ 207 (207)
T cd07633 144 EADLQVDKERQNFYESSLEYVYQIQEVQESKKFDVVEPVLAFLHSLFTSNNLTVELTQDFLPYK 207 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcccC
Confidence 36677888888898887677766666666 4899999999999999999999999999998863
No 40
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=99.70 E-value=5.2e-15 Score=119.22 Aligned_cols=161 Identities=18% Similarity=0.276 Sum_probs=134.0
Q ss_pred hHHHHHHHHhccc-CC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH-HHHhhHhhhhhh
Q psy14114 88 EYLGLDMTEAGNA-FG-PGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIV-KERSLLESKRLD 164 (248)
Q Consensus 88 ~~Lg~~m~~~~~~-~~-~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~-~~rkkl~~~RLd 164 (248)
+.+..++...|.. +. ++..+|.++.+|+....+++..-..+...++.-+.=||.+|+..|++.+. ..||.+++..-|
T Consensus 40 ~~~~~~le~lg~~~l~~~~~~~~t~fl~~av~tkel~al~k~L~qn~nniv~fpldsflK~dlr~~K~D~KK~FeK~skD 119 (213)
T cd07640 40 EQYTEALENLGNSHLSQNNHELSTGFLNLAVFTREVTALFKNLVQNLNNIVSFPLDSLLKGQLRDGRLESKKQMEKAWKD 119 (213)
T ss_pred HHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHhhhhhHHHHhHHHHHHHH
Confidence 4444555444432 23 34679999999999999999999999999999999999999999999999 999999999999
Q ss_pred hHHHHHHHHhhccccccc--------cchHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHH
Q psy14114 165 LDSCKNRVRKARSLLGTQ--------SNAERDLRIAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYYANC 235 (248)
Q Consensus 165 ~Daak~k~~kak~~~~~~--------~~~e~el~~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~~~~ 235 (248)
||++..|+.++++..++. +++.++++..+..|....=++......+.. ..+|.+..|.+|+.||.+||+++
T Consensus 120 yE~kl~K~ak~~r~k~~~~g~~~~e~eEaae~l~~eRr~Fql~acdYllkin~iq~KK~~diLq~Llsy~hAQ~~fFqqG 199 (213)
T cd07640 120 YEAKIGKLEKERREKQKQHGLIRLDMTDTAEDMQRERRNFQLHMCEYLLKAQESQMKQGPDFLQSLIKFFHAQHNFFQDG 199 (213)
T ss_pred HHHHHHHHhccccccchhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887665522 236778888999998876555544444444 47999999999999999999999
Q ss_pred HHHHHHHHHhhcC
Q psy14114 236 HKIMQDLKNELSK 248 (248)
Q Consensus 236 ~~~L~~l~~~l~~ 248 (248)
++.++++.|++.+
T Consensus 200 ~~~l~~l~pyik~ 212 (213)
T cd07640 200 WKAAQNLGPFIEK 212 (213)
T ss_pred HHHHHHHHhHhhc
Confidence 9999999999864
No 41
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=99.66 E-value=2.4e-14 Score=117.37 Aligned_cols=160 Identities=14% Similarity=0.192 Sum_probs=135.7
Q ss_pred hHHHHHHHHhcc---c-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhh
Q psy14114 88 EYLGLDMTEAGN---A-FGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRL 163 (248)
Q Consensus 88 ~~Lg~~m~~~~~---~-~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RL 163 (248)
..++..+.++-. + .|+|...+.+|.+|+.+...|.+.+..+..+++..++.||.+|...|++++...||++++..-
T Consensus 40 ~~~~~~l~~~~~~~f~~~~dDe~i~~~L~kFs~~L~El~~~~~~L~~q~~~sl~~pL~~F~kedL~~~Ke~KK~FdK~Se 119 (215)
T cd07631 40 HLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASN 119 (215)
T ss_pred HHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 567777777652 2 345667899999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhccccccc---cchHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHHHH-H
Q psy14114 164 DLDSCKNRVRKARSLLGTQ---SNAERDLRIAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYYANCHK-I 238 (248)
Q Consensus 164 d~Daak~k~~kak~~~~~~---~~~e~el~~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~~~~~~-~ 238 (248)
+||+|..|.-..++.++.. .++..++..++..|.+..=+++..+..+.. +..+++..|.+|+.||.+||.+|++ +
T Consensus 120 ~~d~Al~K~a~lsk~K~~E~~~eea~~~v~~tR~~F~~~aLdYv~qLn~lQ~rKKfefLe~lLs~m~A~~tFFhqG~e~L 199 (215)
T cd07631 120 DHDAAINRYSRLSKRRENEKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENL 199 (215)
T ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999987554333221 124567888999999998888888888877 4899999999999999999999999 5
Q ss_pred HHHHHHhhc
Q psy14114 239 MQDLKNELS 247 (248)
Q Consensus 239 L~~l~~~l~ 247 (248)
..++.|++.
T Consensus 200 ~~dl~~f~~ 208 (215)
T cd07631 200 NEQLEEFLT 208 (215)
T ss_pred HHHHHHHHH
Confidence 558888753
No 42
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=99.65 E-value=4.8e-14 Score=116.48 Aligned_cols=181 Identities=16% Similarity=0.163 Sum_probs=142.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcH-HH
Q psy14114 31 LDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTY-GT 109 (248)
Q Consensus 31 l~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~-g~ 109 (248)
.|++|.++++++..+...+.++++.++.|+.. .+ .++. .....+.++.+... ++.+- ..
T Consensus 3 ~D~~fd~~e~rF~~~e~~~~~l~kd~k~Y~~~---~~--~~~~------------~~~~~~~~~~d~y~---~~~~~~~~ 62 (195)
T cd07589 3 KDKEFDELEKKFGSLEKQVQLVVRNVELYLQH---VQ--ESVL------------VKVLALEVVLDLYP---SNHPRLES 62 (195)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--HHHH------------HHHHHHHHHHHhcc---CCChhhHH
Confidence 68999999999999999999999999999874 11 1110 01222233333222 11111 11
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHH
Q psy14114 110 ALIKVGQYEQKL-GAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERD 188 (248)
Q Consensus 110 aL~~~g~a~~~i-a~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~e 188 (248)
....+..+...+ ..+..++...++.+|+.|+.+++. .|+.+.+..+|+.++.+|||..++++.+.. + ++++
T Consensus 63 ~~~~~~~~~~~~~~~~~~e~~~~i~~~V~~Pl~~~~~-~~~~~~k~I~KR~~KllDYdr~~~~~~k~~-----k--~e~~ 134 (195)
T cd07589 63 KWERFRRVVRGISSKALPEFKSRVRKLVIEPLSSLLK-LFSGPQKLIQKRYDKLLDYERYKEKKERGG-----K--VDEE 134 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHhhhhccHHHHHHHHHhhc-----c--hHHH
Confidence 223344444444 457888999999999999999998 999999999999999999999999997732 2 7889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHH
Q psy14114 189 LRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIM 239 (248)
Q Consensus 189 l~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~~~L 239 (248)
++.|+..|+...+.+...|+.+.......+. +|.+||.+|.+||..+++.+
T Consensus 135 l~~a~~~y~~lN~~L~~ELP~l~~~~~~~l~~~~~s~~~~Q~~~~~~~~~~~ 186 (195)
T cd07589 135 LEEAANQYEALNAQLKEELPKFNQLTAQLLETCLKSFVELQRDLYDTLLKRA 186 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998888888 99999999999999999875
No 43
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=99.64 E-value=5.2e-14 Score=118.17 Aligned_cols=193 Identities=19% Similarity=0.192 Sum_probs=147.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCC-CCCcH---
Q psy14114 32 DAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFG-PGTTY--- 107 (248)
Q Consensus 32 ~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~-~~s~~--- 107 (248)
|++|..+++++..+...+.+|++.++.|... .+.... ....++.++.+.-...+ +.+..
T Consensus 1 D~~f~~~~~~f~~~e~~~~kL~k~~k~y~~a---~~~l~~--------------~~~~~~~~~~~ly~p~~~~~~~~~~~ 63 (216)
T cd07599 1 DEQFEELEKDFKSLEKSLKKLIEQSKAFRDS---WRSILT--------------HQIAFAKEFAELYDPIVGPKESVGSH 63 (216)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--------------HHHHHHHHHHHHhCCcCCCCcCcCCC
Confidence 6799999999999999999999999999763 111100 12344444444333321 11111
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHh-hccc--
Q psy14114 108 ------GTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRK-ARSL-- 178 (248)
Q Consensus 108 ------g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~k-ak~~-- 178 (248)
-.....+..+...+..........+..+|+.|+..++. .|+.+.+..+|++++++|||..+.++.+ ....
T Consensus 64 ~~~~~~~~~~~~y~~~~~~l~~~~~~~l~~i~~~V~~P~~~~~~-~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~ 142 (216)
T cd07599 64 PAPESTLARLSRYVKALEELKKELLEELEFFEERVILPAKELKK-YIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKE 142 (216)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCC
Confidence 13445566666666555555567999999999999999 9999999999999999999999999987 4221
Q ss_pred -----cccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 179 -----LGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDL 242 (248)
Q Consensus 179 -----~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~~~L~~l 242 (248)
+.+...++++++.|+..|+...+.+...|+.+++...+.+. .+..|+..|+.||...+..|...
T Consensus 143 ~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~l~~~ 212 (216)
T cd07599 143 LSLKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLALADEFLPPLFKSFYYIQLNIYYTLHEYLQEF 212 (216)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11112378899999999999999999999999998888888 88999999999999999988753
No 44
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=99.60 E-value=2e-13 Score=111.17 Aligned_cols=156 Identities=11% Similarity=0.164 Sum_probs=130.7
Q ss_pred hHHHHHHHHhcc---cCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhh
Q psy14114 88 EYLGLDMTEAGN---AFG-PGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRL 163 (248)
Q Consensus 88 ~~Lg~~m~~~~~---~~~-~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RL 163 (248)
+.++.-+.++.. .+| +|...+.+|.+|+.+...|.+.+..+..++..+++.||.+|...||+.+...||++++..-
T Consensus 40 ~~~s~~l~~~~~~~~~~~~~D~~v~~sL~kFs~~L~el~~~h~~L~dqaq~sl~~pL~~F~KeDl~~vKe~KK~FdK~Se 119 (215)
T cd07632 40 QQLSKQLLAYEKQNFALGKGDEEVISTLQYFAKVVDELNVLHSELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGIASN 119 (215)
T ss_pred HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 566666776654 244 5667899999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhcccccc-ccc--hHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 164 DLDSCKNRVRKARSLLGT-QSN--AERDLRIAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYYANCHKIM 239 (248)
Q Consensus 164 d~Daak~k~~kak~~~~~-~~~--~e~el~~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~~~~~~~L 239 (248)
+||+|..|...+++.++. ... ...++..++..|-+..=+++..+..+.. +..+++..|.+|+.||.+||.+|++++
T Consensus 120 ~~d~AL~KnaqlskkK~~E~~eae~~~~l~~sRr~F~~~ALdYV~qiN~lQ~RKKfeiLE~mLsym~Aq~TFFhQGyeL~ 199 (215)
T cd07632 120 EHDLSMAKYSRLPKKRENEKVKAEVAKEVAYSRRKQHLSSLQYYCALNALQYRKRVAMLEPMLGYTHGQINFFKKGAELF 199 (215)
T ss_pred HHHHHHHHHhhCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999866543321 111 2235888889999877677878877777 489999999999999999999999998
Q ss_pred HHHH
Q psy14114 240 QDLK 243 (248)
Q Consensus 240 ~~l~ 243 (248)
+.-.
T Consensus 200 ~~~~ 203 (215)
T cd07632 200 SKKL 203 (215)
T ss_pred HHHH
Confidence 7643
No 45
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=99.40 E-value=1.1e-10 Score=98.44 Aligned_cols=210 Identities=17% Similarity=0.222 Sum_probs=152.6
Q ss_pred HHHHHHHHHHhhhhcCccc----ccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCC
Q psy14114 10 SALSRVVQLTEEKLGTSEK----TELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLS 85 (248)
Q Consensus 10 ~~~~r~~Q~~~Ek~G~~ek----Tel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~ 85 (248)
.++.-++|.+.|++|..+. | .|+++..--..+..+...|..|++.++.|... +.. +. .
T Consensus 7 ~~~~~tkq~~~e~~g~~~~~~~it-~D~eL~~kle~l~~~~~~y~~L~~~~~~~~~~---------l~~-l~-------q 68 (229)
T PF06456_consen 7 STYKCTKQMVSEKLGKKEDSRAIT-VDDELDAKLELLRDTQRTYRGLLKHARAYQNR---------LQA-LS-------Q 68 (229)
T ss_dssp -----------------------C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH-HH-------H
T ss_pred hhHHHHHHHHHHHcCcccccchhh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH-HH-------H
Confidence 5667788999999999875 4 68888888888888889999999999988652 110 11 1
Q ss_pred chhHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhh
Q psy14114 86 NLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDL 165 (248)
Q Consensus 86 ~~~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~ 165 (248)
....||..+.+.|.. .+...+|.++..+|+++..++.-...+..++ ..|+.-|++|++.-|++.....++.+..|.+|
T Consensus 69 ~q~~lg~~f~~~~~~-e~~~~l~~~f~~~~~~~~~~~~~~~~L~~~l-~~~~~~l~Tf~~kaI~DT~~Tik~ye~aR~EY 146 (229)
T PF06456_consen 69 TQKELGDFFAELGVR-EKSPALGEEFSANGEAQRSLAKQGETLLKAL-KRFLSDLNTFRNKAIPDTLLTIKKYEDARFEY 146 (229)
T ss_dssp HHHHHHHHHHHHHH---H-CCGHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 257899999998874 2345689999999999999999999999887 58999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccc-cc-------chHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHH
Q psy14114 166 DSCKNRVRKARSLLGT-QS-------NAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCH 236 (248)
Q Consensus 166 Daak~k~~kak~~~~~-~~-------~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~ 236 (248)
|+.+..++....+... .. .....+..++.+|+.-..++..-|.=+-.++...+. .|..|+.+-..||..|.
T Consensus 147 ~ay~~~lke~~~e~~~~~~~~~~~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~~~~~ 226 (229)
T PF06456_consen 147 DAYRLWLKEMSDELDPDTAKQEPKFRVAQGNYQEAKERFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYFSGNA 226 (229)
T ss_dssp HHHHHHHHHHH--TSTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999876532211 10 133456788889998888888888766677777777 99999999999999998
Q ss_pred HHH
Q psy14114 237 KIM 239 (248)
Q Consensus 237 ~~L 239 (248)
+.|
T Consensus 227 ~~l 229 (229)
T PF06456_consen 227 QAL 229 (229)
T ss_dssp HHH
T ss_pred hhC
Confidence 875
No 46
>KOG0521|consensus
Probab=99.34 E-value=6.3e-11 Score=115.17 Aligned_cols=193 Identities=15% Similarity=0.210 Sum_probs=156.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHHHH
Q psy14114 31 LDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTA 110 (248)
Q Consensus 31 l~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~a 110 (248)
+.+++..+++.++.+...+..++.....|++. .+.+|..+.+....-+.+-..|.+
T Consensus 26 ~ee~~~~~~~~l~k~~~~~~~~~~~~~~~~~~------------------------~~~f~~~~~d~~~~~~~~~~~~~~ 81 (785)
T KOG0521|consen 26 FEEDAGTLEKYLNKLLKAMTRKYDAGKEFVQA------------------------TEQFGKGLKDLFSLGQDEEVISET 81 (785)
T ss_pred HHHHHHhhhhhHHHHHHHHHhhhcccHHHHHH------------------------HHHHHHHHHHHHHhccCchhhhhH
Confidence 45666677777777777777776666666552 355666665553333344567889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhcccccc--ccchHHH
Q psy14114 111 LIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGT--QSNAERD 188 (248)
Q Consensus 111 L~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~--~~~~e~e 188 (248)
|.+|..+..+++.....+..++...+..||.+|.+.|+.++...|+.+++..-+||.++.|+.+..+.... ....+++
T Consensus 82 l~~fs~~~~e~~~~~~~L~~q~~~~~~~~l~~f~k~dl~~v~~~kk~f~ka~~~~d~a~~k~~~l~k~~~~~~~~e~~~~ 161 (785)
T KOG0521|consen 82 LQKFSKVLRELGTYHTELRSQLAHTLSLPLSQFVKGDLHEVKELKKLFEKASEEYDLALVKYSRLPKKRRSKVKTEVEEE 161 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHhhHHHHHHHhhhhhhccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998765433311 1136779
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14114 189 LRIAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 189 l~~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l~ 247 (248)
|..++..|..+.=.+...+..+.. +..+.+..+..|+.+|..||+++++++.+|-+++.
T Consensus 162 l~~~r~~f~~~~~~y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF~~g~~l~~~m~p~~~ 221 (785)
T KOG0521|consen 162 LAAARRKFQLTALDYVLALNVLQAKKQFEILETLLGFMHAQINFFKQGEDLLSQMDPYIK 221 (785)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHHHHhccchhcccHhHHhhhhHHHH
Confidence 999999999998888877766555 58899999999999999999999999999988763
No 47
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.32 E-value=6.5e-10 Score=92.25 Aligned_cols=187 Identities=13% Similarity=0.138 Sum_probs=151.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHHHH
Q psy14114 31 LDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTA 110 (248)
Q Consensus 31 l~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~a 110 (248)
-|++|.++-..++.+...+..|.+.....+.-. .+ -......||.++..-|. .+..++.+
T Consensus 12 ~d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~-----~e------------l~~~~~efg~~~~~ls~---~E~~L~~~ 71 (200)
T cd07624 12 RSPEFDKMNEYLTLFGEKLGTIERISQRIHKER-----IE------------YFDELKEYSPIFQLWSA---SETELAPL 71 (200)
T ss_pred CCccHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----HH------------HHHHHHHHHHHHHHHHh---cchhHHHH
Confidence 478899999999988888888888776543310 00 00113455555555443 23358999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHHH
Q psy14114 111 LIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLR 190 (248)
Q Consensus 111 L~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el~ 190 (248)
|..+|.+...++.....+.......|..||+.++. .+..+....+..+.++.+|+.+..-+.+.+.. ++.+++
T Consensus 72 L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~-y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~------l~~ev~ 144 (200)
T cd07624 72 LEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLL-YSDAVKDVLKRRDQFQIEYELSVEELNKKRLE------LLKEVE 144 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Confidence 99999999999999999999999999999999998 88899999999999999999999998765422 788999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 191 IAQSEFDRQAEITKLLLEGVQTS-HTSHLRCLHEFVEAQVNYYANCHKIMQDLKN 244 (248)
Q Consensus 191 ~a~~~fe~~~e~~~~~m~~i~~~-e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~ 244 (248)
.|++.|+...+.+...+..+-.. ..|.-..|.+|++.|..||+++.+.++.+.|
T Consensus 145 ~a~~~~e~~~~~~~~E~~rF~~~K~~d~k~~l~~~a~~qi~~~~~~~~~We~~~p 199 (200)
T cd07624 145 KLQDKLECANADLKADLERWKQNKRQDLKKILLDMAEKQIQYYEQCLAAWEEVLP 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999998899888774 5666679999999999999999999988765
No 48
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.29 E-value=2e-09 Score=89.71 Aligned_cols=193 Identities=13% Similarity=0.141 Sum_probs=142.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHHHHH
Q psy14114 32 DAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTAL 111 (248)
Q Consensus 32 ~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~aL 111 (248)
+.....+..+|+.++....+|+..+..|..-. .+ +. .....||.++..+|..= +.+++.+|
T Consensus 3 ~~~~k~i~~~i~~lE~hl~~l~~~~~~lv~k~--~~--------L~-------~~~~~fak~~~~la~~E--~~~L~~~L 63 (211)
T cd07598 3 DNQTKFIQERITNVEKHFGELCQDFAAYTRKT--AR--------LR-------DKGDELAKSINAYADTE--NPSLKQGL 63 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--------HH-------HhHHHHHHHHHHHHhcc--CHHHHHHH
Confidence 34566777788888888888888887775531 00 00 02477888888877643 67899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHh-------hHhhhhhhhHHHHHHHHhhccccccccc
Q psy14114 112 IKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERS-------LLESKRLDLDSCKNRVRKARSLLGTQSN 184 (248)
Q Consensus 112 ~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rk-------kl~~~RLd~Daak~k~~kak~~~~~~~~ 184 (248)
..++++...|++.+......+...|++||..+.. -++.+...+| ++-+.+.-++..|.+ .+++.....+
T Consensus 64 ~~lae~~~~i~d~~q~qv~~l~~~v~epLk~Y~~-l~k~~k~~~K~~~~ar~~~~~~~~~leklk~~---~~~d~~~i~e 139 (211)
T cd07598 64 KNFAECLAALQDYRQAEVERLEAKVVQPLALYGT-ICKHARDDLKNTFTARNKELKQLKQLEKLRQK---NPSDRQIISQ 139 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCchhhHHHH
Confidence 9999999999999999999999999999999886 4555544443 444444222222111 1111111113
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14114 185 AERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 185 ~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~~~L~~l~~~l~ 247 (248)
++.+|..|+.+|+.+.......|..|-......+. .|.+||.+|+.||.++++++..+-..+.
T Consensus 140 aE~~l~~a~~d~~r~s~~l~ee~~rFe~~k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~~ 203 (211)
T cd07598 140 AESELQKASVDANRSTKELEEQMDNFEKQKIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDIQ 203 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999987777777 8889999999999999999988766553
No 49
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=99.28 E-value=2.5e-09 Score=90.65 Aligned_cols=197 Identities=20% Similarity=0.286 Sum_probs=153.1
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHHH
Q psy14114 30 ELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGT 109 (248)
Q Consensus 30 el~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~ 109 (248)
+-|+.|.+....++.+......+.+.+...... +.. +. .....||.++...|.. .++.+++.
T Consensus 21 e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~----~~~--l~-----------~~~~e~~~~~~~la~~-E~~~~l~~ 82 (236)
T PF09325_consen 21 EPDEWFEEIKDYVDKLEEQLKKLYKSLERLVKR----RQE--LA-----------SALAEFGSSFSQLAKS-EEEKSLSE 82 (236)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--HH-----------HHHHHHHHHHHHhhcc-cCCchhHH
Confidence 568999999999999999999998887665432 000 00 0135666666666542 34567999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhcccc--------cc
Q psy14114 110 ALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLL--------GT 181 (248)
Q Consensus 110 aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~--------~~ 181 (248)
+|..+|.+...++.+...+...-..+|..||..++. ++..+...-..+......|..+...+.+.+... ..
T Consensus 83 ~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~-~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~ 161 (236)
T PF09325_consen 83 ALSQLAEAFEKISELLEEQANQEEETLGEPLREYLR-YIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNR 161 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 999999999999999999999999999999999998 899999998999999999988888876543210 00
Q ss_pred ----------ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14114 182 ----------QSNAERDLRIAQSEFDRQAEITKLLLEGVQTS-HTSHLRCLHEFVEAQVNYYANCHKIMQDLKNE 245 (248)
Q Consensus 182 ----------~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~-e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~ 245 (248)
...++..+..++.+|+...+.+...+..+-.. ..+.-..|..|+..|..||+++.+.++.+.|+
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~~~ 236 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFLPE 236 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 01245556777888999999999888887774 45555699999999999999999999988764
No 50
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.28 E-value=2e-09 Score=88.26 Aligned_cols=181 Identities=12% Similarity=0.129 Sum_probs=148.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHHHHH
Q psy14114 32 DAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTAL 111 (248)
Q Consensus 32 ~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~aL 111 (248)
|++|.++...++.+...+.+|.+.....+.-+. .-......||.++..-|..-+ .++|.+|
T Consensus 3 d~~F~ei~e~~~~L~~~L~~l~ki~~Rl~kr~~-----------------~l~~d~~efg~~~~~L~~~E~--~~L~~~l 63 (185)
T cd07628 3 DKEFLEIREKSDKLDENLTKIDKIFAKVVKRQS-----------------DLSVDYADLATQFQKLGSLES--GEITEPF 63 (185)
T ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHhhCc--hhhhHHH
Confidence 678999999999999888888887765433210 001123556666665554322 1399999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHHHH
Q psy14114 112 IKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRI 191 (248)
Q Consensus 112 ~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el~~ 191 (248)
..+|.....++.....+...+..+|+.||+.++. ++..+....+..+.+++||+.+..-+ ++.+++.
T Consensus 64 ~~~~~~~~~~s~~~~~l~~~~~~~f~~~Lkd~~~-y~~s~k~~lk~R~~kq~d~e~l~e~l------------l~~~ve~ 130 (185)
T cd07628 64 KIFSESLSQFSTSLRVLNKYTDENYLTSLKDLLH-YILSLKNLIKLRDQKQLDYEELSDYL------------LTDEVEN 130 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHH------------HHHHHHH
Confidence 9999999999999999999999999999999998 99999999999999999999987555 5678999
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 192 AQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYYANCHKIMQDLKN 244 (248)
Q Consensus 192 a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~ 244 (248)
|+..|+.....+...+..+-. +..+.-..|.+|++.|..||+.+.+.++.+.|
T Consensus 131 a~~~~e~f~~~~~~E~~rF~~~k~~elk~~l~~~a~~qi~~y~~~~~~W~~~~~ 184 (185)
T cd07628 131 AKETSDAFNKEVLKEYPNFERIKKQEIKDSLGALADGHIDFYQGLVEDWEKVEP 184 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999998877 45777779999999999999999999988754
No 51
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.22 E-value=3.1e-09 Score=88.55 Aligned_cols=196 Identities=19% Similarity=0.206 Sum_probs=155.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCC-CcHHH
Q psy14114 31 LDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPG-TTYGT 109 (248)
Q Consensus 31 l~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~-s~~g~ 109 (248)
-|+.|.+....++.+...+..+.+.+..++.-. . . +. .....||.++...|..-... ..++.
T Consensus 2 ~d~~f~~~~~~v~~le~~l~~l~~~~~~~~k~~----~-~-l~-----------~~~~elg~~~~~Ls~~e~~~~~~l~~ 64 (218)
T cd07596 2 EDQEFEEAKDYILKLEEQLKKLSKQAQRLVKRR----R-E-LG-----------SALGEFGKALIKLAKCEEEVGGELGE 64 (218)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-H-HH-----------HHHHHHHHHHHHHHhhccccchhhHH
Confidence 478899999999999999999888887765421 0 0 00 02467788777777643221 25999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccc-------c---
Q psy14114 110 ALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSL-------L--- 179 (248)
Q Consensus 110 aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~-------~--- 179 (248)
++..+|.+...++.....+......+|++||..++. .+..+...-+....+..+|+.+...+.+.+.. .
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~y~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~ 143 (218)
T cd07596 65 ALSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLR-YCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIK 143 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 999999999999999999999999999999999998 99999999999999999999998888654311 0
Q ss_pred -cc-------ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 180 -GT-------QSNAERDLRIAQSEFDRQAEITKLLLEGVQTS-HTSHLRCLHEFVEAQVNYYANCHKIMQDLKN 244 (248)
Q Consensus 180 -~~-------~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~-e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~ 244 (248)
.+ ...++..+..++.+|+...+.+...+..+... ..+.-..|..|+..|..||+.+.+.++.+.|
T Consensus 144 ~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~~~~ 217 (218)
T cd07596 144 PAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAWESLLP 217 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 00 01256778888899999999999999988774 4555559999999999999999999998865
No 52
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=99.20 E-value=1e-08 Score=84.03 Aligned_cols=185 Identities=12% Similarity=0.180 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHHHHHHHHHHHHH
Q psy14114 40 GRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQ 119 (248)
Q Consensus 40 ~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~ 119 (248)
..++.+...|..|++.++.|.+. ++. +. .....||.++...|.. +..+..+...+|+++.
T Consensus 9 E~L~~~q~~Y~~ll~~~~~l~~~---------~~~-l~-------qtq~~Lg~~f~~l~~k---~p~l~~af~~~aet~k 68 (201)
T cd07660 9 EVLRDTQRKYESVLRLARALASQ---------FYQ-ML-------QTQKALGDAFADLSQK---SPELQEEFTYNAETQK 68 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHH-HH-------HHHHHHHHHHHHHHhc---ChHHHHHHHHHHHHHH
Confidence 34455566788889888888653 111 10 1357899999988773 3456888999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccc--cc----cchHHHHHHHH
Q psy14114 120 KLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLG--TQ----SNAERDLRIAQ 193 (248)
Q Consensus 120 ~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~--~~----~~~e~el~~a~ 193 (248)
.++.--..+..++ ..|+..|+++++.-|+.-....++.++.|++||+.+..+.....+.. +. ..+...+..++
T Consensus 69 ~l~kng~~Ll~al-~~f~s~l~T~~~kai~DT~lTI~~ye~aR~EYdayr~D~ee~~~~~~~~~~l~r~~~~q~~~~~~k 147 (201)
T cd07660 69 LLCKNGETLLGAL-NFFVSSLNTLVNKTMEDTLMTVKQYESARIEYDAYRNDLEALNLGPRDAATSARLEEAQRRFQAHK 147 (201)
T ss_pred HHHHhHHHHHHHH-HHHHHHHHHHHHhhccHHHHHHHHHHhhhHhHHHHhccHHHcccCCCccchHhhHHHHHHHHHHHH
Confidence 9988777787777 48999999999988999999999999999999999988765322211 11 11556788999
Q ss_pred HHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14114 194 SEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDLKNE 245 (248)
Q Consensus 194 ~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~~~L~~l~~~ 245 (248)
.+|+....++..-|.=+-.++...+. +|.-|+.|-..||..|++.|++...+
T Consensus 148 ~kf~KLR~DV~~Kl~lLeenrv~vm~~QL~~f~~a~~ay~sgn~~~L~~~~~~ 200 (201)
T cd07660 148 DKYEKLRNDVSVKLKFLEENKVKVMHKQLLLFHNAISAYFSGNQKQLEQTLKQ 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 99999998888888766667787777 99999999999999999999998765
No 53
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=99.15 E-value=1.6e-08 Score=83.26 Aligned_cols=190 Identities=13% Similarity=0.165 Sum_probs=150.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcH-HHHH
Q psy14114 33 AHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTY-GTAL 111 (248)
Q Consensus 33 ~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~-g~aL 111 (248)
+|+..-...+..+...|..|++.++.|.+. ++. +. .....||+.+.+.|..-+ .. |.++
T Consensus 2 ~eL~akle~l~~~~~~y~~Ll~~~~~~~~~---------~~~-l~-------q~q~~lG~~f~~l~~~~~---~~a~~~f 61 (203)
T cd00011 2 LELELQLELLRETKRKYESVLQLGRALTAH---------LYS-LS-------QTQHALGDAFADLSQKDP---ELAGEEF 61 (203)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH-HH-------HHHHHHHHHHHHHHhcCC---cHHHHHH
Confidence 444444555666777889999999888663 110 10 135789999999887443 33 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccc-cc--ccc-----
Q psy14114 112 IKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSL-LG--TQS----- 183 (248)
Q Consensus 112 ~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~-~~--~~~----- 183 (248)
..+|+++..++.-...+..++. .|+..|++|++.-|+.-.-..++.+..|.+||+.+.+++....+ .+ ...
T Consensus 62 ~~~~~a~r~~~k~g~~ll~~l~-~~~~~l~T~~~kai~DT~lTI~~ye~aR~EY~a~~l~~ke~~~e~~~~~~~~~~k~r 140 (203)
T cd00011 62 GYNAEAQKLLCKNGETLLGAVN-FFVSSINTLVTKAIEDTLLTVKQYEAARLEYDAYRLDLKELSLEPRDDTAGTRGRLR 140 (203)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhhhcchHHHHHHHHHHHHHhHHHHHHHHHHhcccCCcccccchHHHH
Confidence 9999999999999999988885 89999999999999999999999999999999999999876322 11 110
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 184 NAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDLK 243 (248)
Q Consensus 184 ~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~~~L~~l~ 243 (248)
.+-..++.++.+|+.-..++..-|.=+-.++...+. +|..|+.+-..||..|+..|+++.
T Consensus 141 ~~q~~~~~~k~kf~kLr~Dv~~Kl~lL~~~r~~~l~~qL~~~~~al~~y~~~~~~~l~~~~ 201 (203)
T cd00011 141 SAQATFQEHRDKFEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNTVSAYFAGNQKVLEQTL 201 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 134578888899999888888777666667787777 999999999999999999999875
No 54
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=99.15 E-value=2.2e-08 Score=83.02 Aligned_cols=189 Identities=15% Similarity=0.153 Sum_probs=145.9
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHHH
Q psy14114 30 ELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGT 109 (248)
Q Consensus 30 el~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~ 109 (248)
.-|++|.++..-++.+...+..|.++....+.- ..+ + ......||.++..-+. .+..+|.
T Consensus 11 ~~d~~F~~ikey~~~L~~~l~~iekv~~Rl~~r-----~~~-l-----------~~~~~e~g~~f~~ls~---~E~~l~~ 70 (201)
T cd07622 11 NPDKRFEDLKNYSDELQTNLNNLLKVRARLAER-----LYG-V-----------YKIHANYGRVFSEWSA---IEKEMGD 70 (201)
T ss_pred CCCHhHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHH-H-----------HHHHHHHHHHHHHHHh---cchhHHH
Confidence 358899999998988888887777665443221 000 0 0012444544444433 3468999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHH
Q psy14114 110 ALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDL 189 (248)
Q Consensus 110 aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el 189 (248)
+|..+|.+....+.+....... ...|.+||+.++- ....+....|+.+-++++|+.+-..+.+...+ ++.++
T Consensus 71 ~le~~g~~~d~~~~~~~~~~~~-~~~f~e~LkEy~~-ya~slk~vlk~r~~~q~~~e~~~~~L~~k~~~------l~~~v 142 (201)
T cd07622 71 GLQKAGHYMDSYAASIDNGLED-EELIADQLKEYLF-FADSLRAVCKKHELLQYDLEKAEDALANKKQQ------GEEAV 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Confidence 9999998888887777776655 4789999999998 88888888889999999999999888665322 78899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114 190 RIAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNEL 246 (248)
Q Consensus 190 ~~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l 246 (248)
+.|++.++...+.+...+..+.. +..|.-..|.+|+..|..||+.+.+.+..+...|
T Consensus 143 e~a~~~~e~f~~~~~~E~~rF~~~K~~dlk~~l~~~A~~qi~~~~~~~~~W~~~~~~~ 200 (201)
T cd07622 143 KEAKDELNEFVKKALEDVERFKKQKVRDLKEILISYAKLQIKLAKKGLQTWTNIKECL 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999988877 4677777999999999999999999999987655
No 55
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.03 E-value=1.5e-07 Score=77.28 Aligned_cols=182 Identities=14% Similarity=0.095 Sum_probs=137.0
Q ss_pred CChHHHHHHHHHHHHHHHHH-HHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHHH
Q psy14114 31 LDAHFESLAGRSDVTKLWTE-KIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGT 109 (248)
Q Consensus 31 l~~e~~~lE~~~d~~k~~~~-~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~ 109 (248)
.|+.|.++|..++.++..+. .|.+.......- ..+ -.....-||.++...|..- ++..++.
T Consensus 2 ~d~~F~~~e~~~~~~~~~L~~~l~kv~~Ri~k~-----~~~------------l~~dl~elG~~fn~ls~~E-~~~~L~~ 63 (187)
T cd07629 2 PDDEFTDIEAETKKYEQLLHGGMEKVNRRITKR-----LGD------------LAEDMADLGGRFNAFSLEE-QKSELAE 63 (187)
T ss_pred cchHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH-----HHH------------HHHHHHHHHHHHHHHhhcC-CchhHHH
Confidence 57899999999999999986 577665443221 000 0001244555554444421 2235899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHH
Q psy14114 110 ALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDL 189 (248)
Q Consensus 110 aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el 189 (248)
+|.++|.+.....-.-..+...+...|.+||+.++. ....+....+....++++|+....-+ -+.+
T Consensus 64 ~le~~g~a~D~~~~~~~~l~~~l~~~f~EpL~E~~~-y~~s~k~vlk~R~~K~~Q~e~l~~~L-------------~e~~ 129 (187)
T cd07629 64 ALEKVGQAVDSTYLATEALVGSLYYNINEPLSESAQ-FAGVVRELLKYRKLKHVQYEMTKDSL-------------LESA 129 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH
Confidence 999999999999999999999999999999999998 88899999999999999999987777 1233
Q ss_pred HHHHHHHHHHH-HHHHHHHHhhhhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 190 RIAQSEFDRQA-EITKLLLEGVQTS-HTSHLRCLHEFVEAQVNYYANCHKIMQDLKN 244 (248)
Q Consensus 190 ~~a~~~fe~~~-e~~~~~m~~i~~~-e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~ 244 (248)
..+..+|+... ......|..+... ..+.-..|.+|++.|..|+++|.+.+.+++.
T Consensus 130 ~~~~~~~~~~~~~~~~~el~rF~~ek~~dl~~~l~~~a~~~~~~a~~~~~~W~~~~~ 186 (187)
T cd07629 130 LVAASDDLVISSTIKQKDLPRFQREREADLREILKNYSKYHKDWAKQNLEAWKEAKA 186 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444666664 6777788888885 5555669999999999999999999998874
No 56
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=99.02 E-value=6.2e-07 Score=74.70 Aligned_cols=215 Identities=15% Similarity=0.127 Sum_probs=162.8
Q ss_pred HHHHHHHHHhhhhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHH
Q psy14114 11 ALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYL 90 (248)
Q Consensus 11 ~~~r~~Q~~~Ek~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~L 90 (248)
+|+.+.+.+.|-+=+.-+ +.|+-|.+.-.-++.+...+..+++.+...+.. |-+.. .....+
T Consensus 2 ~~~~~~k~~~e~~~~~~k-e~D~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~----rkela-------------~~~~~~ 63 (218)
T cd07663 2 FFKNMVKSADEVLFSGVK-EVDEFFEQEKTFLVNYYNRIKDSCAKADKMTRS----HKNVA-------------DDYIHI 63 (218)
T ss_pred HHHHHHHhHHHHHHhccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------------HHHHHH
Confidence 466677777877533334 679999999999999999999998888765442 11100 012445
Q ss_pred HHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHH
Q psy14114 91 GLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKN 170 (248)
Q Consensus 91 g~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~ 170 (248)
|.+|...+ .+.++.++.+|..+|+...+|...+......-.-.+-++|.-++. ++..+...--.+-+.--+|..|-.
T Consensus 64 s~al~~l~--~ee~t~L~kals~lae~~Ek~~~l~~r~A~~d~~~L~e~L~~Y~r-~~~A~K~ll~rR~ral~~~e~A~~ 140 (218)
T cd07663 64 SAALNSVA--AEEPTVIKKYLLKVAELFEKLRKVEDRVASDQDLKLTELLRYYML-NIEAAKDLLYRRARALADYENSNK 140 (218)
T ss_pred HHHHHhhc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665443 344568999999999999999999888888777888888887777 666666666666667778888888
Q ss_pred HHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114 171 RVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDLKNEL 246 (248)
Q Consensus 171 k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~~~L~~l~~~l 246 (248)
-+.|++....+..+++..+..|+.+|++..+.+...|..+-..+...+. +|..|++.++...+..++.|.+....|
T Consensus 141 ~L~KaR~k~kev~~aE~~~~ea~~~Fe~IS~~~k~El~rF~~~Rv~~Fk~~lve~~E~~ik~ak~~~~~~~~~~~~~ 217 (218)
T cd07663 141 ALDKARLKSKDVKQAEAHQQECCQKFEKLSESAKQELISFKRRRVAAFRKNLIEMTELEIKHAKNNVSLLQSCIDLF 217 (218)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8877754322212378899999999999999999999999987777776 999999999999999999998876543
No 57
>KOG3876|consensus
Probab=99.01 E-value=1.7e-07 Score=78.73 Aligned_cols=211 Identities=13% Similarity=0.182 Sum_probs=151.8
Q ss_pred HHHHHHhhhhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHH
Q psy14114 14 RVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLD 93 (248)
Q Consensus 14 r~~Q~~~Ek~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~ 93 (248)
-.+|.+.|++|+..+| +|.||...-.-++.++.-|..++..++.|..- ++.-+ ...++||++
T Consensus 107 ctkQillEklGk~~rT-VD~ElEaQie~Lrd~~rkY~~vl~lar~fS~~---------l~qmv--------~tq~~L~ds 168 (341)
T KOG3876|consen 107 CTKQILLEKLGKGSRT-VDLELEAQIEVLRDTKRKYESVLALARAFSHH---------LTQMV--------ETQHALGDS 168 (341)
T ss_pred hHHHHHHHHhcCCccc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH--------HHHHHHHHH
Confidence 4578899999999998 99999888888888889999999988876331 11100 125788988
Q ss_pred HHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHH
Q psy14114 94 MTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVR 173 (248)
Q Consensus 94 m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~ 173 (248)
+.+.+.--+ .+-.-..--++++.-++.--..++..+ .-|+..++++++.-|.+-....+..++.|++||+-|+-+.
T Consensus 169 FadLs~K~~---elq~eft~nseTqr~l~kngetLl~al-nfFIsSvnTl~nkTi~DTL~Ti~qyEsARiEyDayR~Dle 244 (341)
T KOG3876|consen 169 FADLSQKSP---ELQEEFTYNSETQRLLGKNGETLLGAL-NFFISSVNTLVNKTIEDTLMTIKQYESARIEYDAYRTDLE 244 (341)
T ss_pred HHHHhccCH---HHHHHhCcCHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhHH
Confidence 887665221 122222222455555555555555555 4688888888888888888889999999999999999998
Q ss_pred hh--cccccc----ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114 174 KA--RSLLGT----QSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDLKNEL 246 (248)
Q Consensus 174 ka--k~~~~~----~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~~~L~~l~~~l 246 (248)
.. .|.+.- ...+.+-+..-+++||.-..++...|.=+-++.+..+. +|.-|..|=..||.-....|++...+|
T Consensus 245 ~~~l~P~~~~t~~~le~aq~~~q~hkekYeKlrnDvaiKmkfLeENrIkVmh~QL~llhnAiaAYfsGNak~LE~tlkqf 324 (341)
T KOG3876|consen 245 ELTLGPRDALTKNLLEGAQEKFQAHKEKYEKLRNDVAIKMKFLEENRIKVMHKQLELLHNAIAAYFSGNAKQLEQTLKQF 324 (341)
T ss_pred HhcCCccccccccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHh
Confidence 65 333221 11244556666777888777777778666667787777 888899999999998888888877665
No 58
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=99.01 E-value=2.6e-07 Score=78.00 Aligned_cols=198 Identities=15% Similarity=0.138 Sum_probs=144.2
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHH
Q psy14114 29 TELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYG 108 (248)
Q Consensus 29 Tel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g 108 (248)
.|.|+-|.+.-..++.+.....++++.+...+.. |-+.. .....||.++...|.. .....++
T Consensus 8 ~E~D~~F~~~k~~i~~Le~~Lk~l~~~~e~lv~~----r~ela-------------~~~~~f~~s~~~L~~~-E~~~~Ls 69 (224)
T cd07623 8 DETDQWFEEKQQQIENLDQQLRKLHASVESLVNH----RKELA-------------LNTGSFAKSAAMLSNC-EEHTSLS 69 (224)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------------HHHHHHHHHHHHHHhc-ccchhHH
Confidence 4679999999999999999999999988776542 11100 0236677777766652 2245799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhcc-----------
Q psy14114 109 TALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARS----------- 177 (248)
Q Consensus 109 ~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~----------- 177 (248)
.+|..+|+++.+|+.....+...-...|.+||..++- .+..+...-....+....|..+...+.+.+.
T Consensus 70 ~al~~la~~~~ki~~~~~~qa~~d~~~l~e~L~eY~r-~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~ 148 (224)
T cd07623 70 RALSQLAEVEEKIEQLHGEQADTDFYILAELLKDYIG-LIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRT 148 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 9999999999999999999988888999999998887 5555555555555555555555554432211
Q ss_pred ccccc-----cchHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14114 178 LLGTQ-----SNAERDLRIAQSEFDRQAEITKLLLEGVQTSH-TSHLRCLHEFVEAQVNYYANCHKIMQDLKNE 245 (248)
Q Consensus 178 ~~~~~-----~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e-~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~ 245 (248)
++... ..++..+..|+.+|+...+.....|..+-... .++-..|..|++.|..|.+++.+.++.+.|+
T Consensus 149 ~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We~~~pe 222 (224)
T cd07623 149 DKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAFLPE 222 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11110 01455566777899999999999999886643 4455599999999999999999999998875
No 59
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=99.01 E-value=4.6e-07 Score=75.72 Aligned_cols=214 Identities=14% Similarity=0.148 Sum_probs=161.6
Q ss_pred HHHHHHHHhhh-hcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHH
Q psy14114 12 LSRVVQLTEEK-LGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYL 90 (248)
Q Consensus 12 ~~r~~Q~~~Ek-~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~L 90 (248)
|..+.+.+.|. ++... -+.|+-|.+.-.-++.+...+..+++.+...+.. |-+.. .....|
T Consensus 3 ~k~~~k~~D~~v~~~~~-~d~D~~Fe~~k~~l~~l~~~Lk~~~~~~~~lv~~----rkela-------------~~~~~f 64 (219)
T cd07621 3 LKSISKSADEELLLSGQ-KDVDEFFEQEKNFLVEYHNRIKDATAKADKMTRK----HKDVA-------------DSYIKI 64 (219)
T ss_pred HHHhHHhhhHHHHcCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------------HHHHHH
Confidence 34445555634 33323 3678999999999999999999988887665432 11100 013556
Q ss_pred HHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHH
Q psy14114 91 GLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKN 170 (248)
Q Consensus 91 g~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~ 170 (248)
|.++...|.. ++++++.+|.++|+++.+|........+.-.-++-++|.-++. ++..+...--.+.+.--+|+.|-.
T Consensus 65 s~al~~L~~~--E~t~L~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r-~~~A~K~~l~rR~ral~~~q~A~k 141 (219)
T cd07621 65 SAALTQLATS--EPTPLDKFLLKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMR-DTQAAKDLLYRRLRCLANYENANK 141 (219)
T ss_pred HHHHHHhhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665553 2379999999999999999998888877777788888887777 777776666667777789999999
Q ss_pred HHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114 171 RVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDLKNEL 246 (248)
Q Consensus 171 k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~~~L~~l~~~l 246 (248)
-+.|++....+..+++.....|+.+|++..+.+...|..|-......+. +|.+|++.|+...+..+++|.+....|
T Consensus 142 ~L~KaR~k~~~v~~AE~~~~~a~~~Fe~iS~~~k~El~rF~~~Rv~~fk~~lve~aE~~ik~Ak~~~~~l~~~~~~l 218 (219)
T cd07621 142 NLEKARAKNKDVHAAEAAQQEACEKFESMSESAKQELLDFKTRRVAAFRKNLVELAELEIKHAKAQIQLLKNCLAAL 218 (219)
T ss_pred HHHHhHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9988764322222388899999999999999999999999987777776 999999999999999999998876543
No 60
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.00 E-value=1.6e-07 Score=79.65 Aligned_cols=189 Identities=8% Similarity=0.090 Sum_probs=141.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHHHH
Q psy14114 31 LDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTA 110 (248)
Q Consensus 31 l~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~a 110 (248)
-|++|.++-..+|.+...+..|.+.........+ .+......+|..+.--|. .+..+|.+
T Consensus 52 ~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~-----------------ey~~~~~~fgk~~~lws~---~E~~L~~~ 111 (243)
T cd07666 52 RPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQR-----------------EYFEELKEYGPIYTLWSA---SEEELADS 111 (243)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhH-----------------HHHHHHHHHHHHHHHHhc---cchhhhHH
Confidence 5888999988888888888777776653322110 000012333333333222 13458899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHHH
Q psy14114 111 LIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLR 190 (248)
Q Consensus 111 L~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el~ 190 (248)
|..+|.+....+.............|+.||+.++- ++..+...-++.+.+..||+..+--+.+.+++. . .+..|++
T Consensus 112 L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~-y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr-~--~~~~ev~ 187 (243)
T cd07666 112 LKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVL-YSETLMGVIKRRDQIQAELDSKVEALANKKADR-D--LLKEEIE 187 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-H--HHHHHHH
Confidence 99999988877777777666777799999999998 777777777777899999999888887765444 2 2889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 191 IAQSEFDRQAEITKLLLEGVQTSHT-SHLRCLHEFVEAQVNYYANCHKIMQDLK 243 (248)
Q Consensus 191 ~a~~~fe~~~e~~~~~m~~i~~~e~-e~~~~L~~lv~aQ~~y~~~~~~~L~~l~ 243 (248)
.++++.++....+...|..+..+.. |.-..|.+|++.|..|+++|....+.+.
T Consensus 188 ~~e~kve~a~~~~k~e~~Rf~~~k~~D~k~~~~~yae~~i~~~~~~~~~We~fl 241 (243)
T cd07666 188 KLEDKVECANNALKADWERWKQNMQTDLRSAFTDMAENNISYYEECLATWESFL 241 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988644 4445999999999999999999887754
No 61
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.93 E-value=1.1e-06 Score=72.57 Aligned_cols=193 Identities=11% Similarity=0.087 Sum_probs=154.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhccc-CCCCCcHHH
Q psy14114 31 LDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNA-FGPGTTYGT 109 (248)
Q Consensus 31 l~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~-~~~~s~~g~ 109 (248)
.|+-|.+.-.-++.+...+..+++.+...+.. |-.. . .....||.++...|.. .++...++.
T Consensus 2 ~D~~F~~~k~yl~~l~~~lk~~~~~~~~lv~~----rk~l--a-----------~~~~~fs~al~~L~~~E~~~~~~l~~ 64 (198)
T cd07630 2 VDEFFQKERDMNTKLSANMKEAAEKFLKIVNT----EQRL--A-----------NALGHLSSSLQLCVGLDEASVVALNR 64 (198)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH--H-----------HHHHHHHHHHHHHhcccccchHhHHH
Confidence 46778887788888888888888777654432 1110 0 0135666666655552 222227899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHH
Q psy14114 110 ALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDL 189 (248)
Q Consensus 110 aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el 189 (248)
+|..+|+++..|......+...-..+|-.||.-++. ++..+...--.+.+.-.+|+.|..-+.|+++.+.. .++...
T Consensus 65 ~l~~lse~~e~i~~~~~~~a~~d~~~Lg~~L~~Y~r-~i~a~K~~l~~R~~~~~~~~~a~k~l~Kar~~k~~--~ae~~~ 141 (198)
T cd07630 65 LCTKLSEALEEAKENIEVVAGNNENTLGLTLDLYSR-YSESEKDMLFRRTCKLIEFENASKALEKAKPQKKE--QAEEAK 141 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHH--HHHHHH
Confidence 999999999999999999999999999999999998 88888888888889999999999999998765433 388899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 190 RIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDLK 243 (248)
Q Consensus 190 ~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~~~L~~l~ 243 (248)
..|+.+|++..+.+...|..|-...+.-+. .|..|++.|+..-+.++++|.+..
T Consensus 142 ~~a~~~fe~iS~~~k~EL~rF~~~Rv~~fk~~l~~~~E~~i~~ak~~~~~~~~~~ 196 (198)
T cd07630 142 KKAETEFEEISSLAKKELERFHRQRVLELQSALVCYAESQIKNAKEAAAVLTKTL 196 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999987777776 999999999999999999987653
No 62
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.93 E-value=2.6e-07 Score=78.08 Aligned_cols=190 Identities=12% Similarity=0.120 Sum_probs=143.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHHHH
Q psy14114 31 LDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTA 110 (248)
Q Consensus 31 l~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~a 110 (248)
-|++|.++-..+|.+-..+..|.+....-.... .+ ++ ....-+|.....-+. .+..++..
T Consensus 49 ~d~eF~e~~ey~d~l~~~l~~ieki~~Rv~kr~-----~~-l~-----------~d~~e~~~~f~~ws~---lE~~l~~~ 108 (240)
T cd07667 49 RPLEFAAIGDYLDTFALKLGTIDRIAQRIIKEE-----IE-YL-----------VELREYGPVYSTWSG---LEGELAEP 108 (240)
T ss_pred CChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-----HH-HH-----------HHHHHHHHHHHHHHH---HhHHHHHH
Confidence 488899988888888877777777654322210 00 00 011233333332221 24578888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHHH
Q psy14114 111 LIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLR 190 (248)
Q Consensus 111 L~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el~ 190 (248)
|..++.+....+.....+.......|+.+|+.++. ++..+...-|+.+.+.+||+..-.-+. .+.++.++ ++.+++
T Consensus 109 L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~-Y~~slk~vlK~RdqkQ~d~E~l~E~l~-~rre~~~k--Le~~ie 184 (240)
T cd07667 109 LEGVSACIGNCSTALEELTEDMTEDFLPVLREYIL-YSESMKNVLKKRDQVQAEYEAKLEAVA-LRKEERPK--VPTDVE 184 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHH
Confidence 99999999999988888888888899999999998 999999999999999999998766552 22233333 788999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 191 IAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYYANCHKIMQDLKN 244 (248)
Q Consensus 191 ~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~ 244 (248)
.++.+++...+.+...+..+-. +..|.-..|.+|.+.|..||+.|.+.++.+.|
T Consensus 185 ~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~~i~fy~~~~~~We~~l~ 239 (240)
T cd07667 185 KCQDRVECFNADLKADMERWQNNKRQDFRQLLMGMADKNIQYYEKCLTAWESIIP 239 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999888776 46888889999999999999999999988754
No 63
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=98.91 E-value=6.3e-07 Score=75.28 Aligned_cols=195 Identities=12% Similarity=0.119 Sum_probs=147.5
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHHH
Q psy14114 30 ELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGT 109 (248)
Q Consensus 30 el~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~ 109 (248)
|-|+.|.+.-..++.+...+..+.+.+...... |.+.. .....||.++...|. +..+..++.
T Consensus 1 e~D~~F~~~k~~i~~Le~~Lk~l~~~~~~l~~~----r~ela-------------~~~~efa~~~~~L~~-~E~~~~l~~ 62 (216)
T cd07627 1 EPDEWFIEKKQYLDSLESQLKQLYKSLELVSSQ----RKELA-------------SATEEFAETLEALSS-LELSKSLSD 62 (216)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------------HHHHHHHHHHHHHHH-hhcchHhHH
Confidence 347889999999999999999999888765442 11100 013566777666665 223568999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhcc-------c----
Q psy14114 110 ALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARS-------L---- 178 (248)
Q Consensus 110 aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~-------~---- 178 (248)
+|..+|.++.++......+...-..+|..||..++. .+..+...-..+.+...+|..+..-+.+.+. .
T Consensus 63 ~l~~~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey~r-~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~ 141 (216)
T cd07627 63 LLAALAEVQKRIKESLERQALQDVLTLGVTLDEYIR-SIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQ 141 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCh
Confidence 999999999999999999888888889999999998 8888888888888888888887777755431 1
Q ss_pred --cccc-----cchHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 179 --LGTQ-----SNAERDLRIAQSEFDRQAEITKLLLEGVQTS-HTSHLRCLHEFVEAQVNYYANCHKIMQDLK 243 (248)
Q Consensus 179 --~~~~-----~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~-e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~ 243 (248)
+... ..++..+..|+..|+...+.+...+..|-.. -.+.-..|..|++.|..+++++.+.++.+.
T Consensus 142 ~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f~ 214 (216)
T cd07627 142 QEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLESAIESQKELIELWETFY 214 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000 0145566777889999999999999888664 455556999999999999999999887653
No 64
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=98.90 E-value=8.3e-07 Score=75.22 Aligned_cols=200 Identities=13% Similarity=0.122 Sum_probs=141.7
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcH
Q psy14114 28 KTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTY 107 (248)
Q Consensus 28 kTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~ 107 (248)
-.|-|+-|.+.-.-++.+.....++++.+...... |.+.. .....||.++...|.. ..+..+
T Consensus 17 ~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~----rkela-------------~~~~efa~s~~~L~~~-E~~~~l 78 (234)
T cd07664 17 MNESDAWFEEKQQQFENLDQQLRKLHASVESLVCH----RKELS-------------ANTAAFAKSAAMLGNS-EDHTAL 78 (234)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------------HHHHHHHHHHHHHHcC-cccchH
Confidence 35669999999999999999999999999875542 11110 0135666666666552 234689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhh-----------c
Q psy14114 108 GTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKA-----------R 176 (248)
Q Consensus 108 g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~ka-----------k 176 (248)
+.+|..+|+++.+|......+...-.-+|-+||..++- .+..+...--.+.+.--.|..+.+-+.+. +
T Consensus 79 s~~l~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR-~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k 157 (234)
T cd07664 79 SRALSQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIR-LIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANK 157 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999988876 44444443333334444444444333321 1
Q ss_pred cccccc-----cchHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114 177 SLLGTQ-----SNAERDLRIAQSEFDRQAEITKLLLEGVQTS-HTSHLRCLHEFVEAQVNYYANCHKIMQDLKNEL 246 (248)
Q Consensus 177 ~~~~~~-----~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~-e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l 246 (248)
+++... ..++.....|+.+|+...+.....|..+-.. -.++-..|..|++.|..|.+++.+.++.+-|..
T Consensus 158 ~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~qke~ie~We~f~p~~ 233 (234)
T cd07664 158 PDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPEA 233 (234)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 111111 0144556667889999999999999888664 345555999999999999999999999888764
No 65
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=98.82 E-value=1.3e-06 Score=71.41 Aligned_cols=188 Identities=14% Similarity=0.209 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHHHHHHHH
Q psy14114 35 FESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKV 114 (248)
Q Consensus 35 ~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~aL~~~ 114 (248)
+..-...++.++..|..|+.-++.++.. ++. +. .....||+++.+.|.-- +...+..++..+
T Consensus 4 l~~qie~L~~t~~~Y~~l~~~~~~l~~~---------f~~-l~-------qtqk~~Gd~Fa~l~~re-~~p~l~eeF~~~ 65 (215)
T cd07659 4 LVKKLEELEQTAELYKGLVEHTKRLLRA---------FYA-LS-------QTHKEFGDLFANIGVRE-PQPAASEAFTKF 65 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH-HH-------HHHHHHHHHHHHHHccC-CChhHHHHHHHh
Confidence 3444455666777888888888877653 111 11 12478999998887632 245788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccc-----c--ch--
Q psy14114 115 GQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQ-----S--NA-- 185 (248)
Q Consensus 115 g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~-----~--~~-- 185 (248)
|+++..|..--..+...++ -|+..|+++++.-|++-.-..|+.+..|..||+-+.+++-...++..- . ..
T Consensus 66 ae~hR~l~k~G~~ll~ai~-~~~s~l~T~l~KaipDT~lTikkY~~ar~EY~ayc~kvkEmd~ee~~~~~~~e~l~rvet 144 (215)
T cd07659 66 GEAHRSIEKFGIELLKTLK-PMLSDLGTYLNKAIPDTKLTIKKYADVKFEYLSYCLKVKEMDDEEYSYAALDEPLYRVET 144 (215)
T ss_pred HHHHHHHHHhHHHHHHHhH-HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCcHHHHHh
Confidence 9999999998888888774 889999999999999999999999999999999999997553211110 0 01
Q ss_pred -HHHH-------HHHHHHHHHHHHHHHHHHHhhhhccchhH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 186 -ERDL-------RIAQSEFDRQAEITKLLLEGVQTSHTSHL-RCLHEFVEAQVNYYANCHKIMQD 241 (248)
Q Consensus 186 -e~el-------~~a~~~fe~~~e~~~~~m~~i~~~e~e~~-~~L~~lv~aQ~~y~~~~~~~L~~ 241 (248)
.-+. ..++++|+.-..++..-|.=+-.++...+ .+|..|+.|-..||..|++.|++
T Consensus 145 gnyeyrl~lRcrq~~r~kf~kLR~DV~vKlelLe~k~vk~i~~QL~~f~~aisay~~~~~~~~~~ 209 (215)
T cd07659 145 GNYEYRLILRCRQEARARFAKLRQDVLEKLELLDQKHVQDIVFQLQRFVSALSEYHSDCHELLKE 209 (215)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1123 67889999998888777755555666444 49999999999999999999873
No 66
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=98.78 E-value=3.3e-06 Score=71.47 Aligned_cols=200 Identities=14% Similarity=0.161 Sum_probs=139.5
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHH
Q psy14114 29 TELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYG 108 (248)
Q Consensus 29 Tel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g 108 (248)
.|-|+-|.+.-..+|.+.....++++.+...+.. |.+.. .....||.++...|. +..+.+++
T Consensus 18 ~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~----r~eLa-------------~~~~eFa~s~~~L~~-~E~~~~Ls 79 (234)
T cd07665 18 NESDVWFEEKLQEVECEEQRLRKLHAVVETLVNH----RKELA-------------LNTALFAKSLAMLGS-SEDNTALS 79 (234)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------------HHHHHHHHHHHHHHh-cccchhHH
Confidence 4568999999999999999999999999876542 11110 012455555544443 22356899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH--HHHHHHHHHHhhHhhhhhhhHHHHHH-------HHhh-ccc
Q psy14114 109 TALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLE--GEMKTIVKERSLLESKRLDLDSCKNR-------VRKA-RSL 178 (248)
Q Consensus 109 ~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~--~~~~~i~~~rkkl~~~RLd~Daak~k-------~~ka-k~~ 178 (248)
.+|..+|+++..|......+...-.-+|-.||..++- ..++.+-..|.++-..=.+.+.-..+ +... +++
T Consensus 80 ~als~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~d 159 (234)
T cd07665 80 RALSQLAEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPD 159 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 9999999999999999999999999999999998875 24444444444443332222221111 1111 111
Q ss_pred cccc-----cchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114 179 LGTQ-----SNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDLKNEL 246 (248)
Q Consensus 179 ~~~~-----~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~~~L~~l~~~l 246 (248)
+... ..++..+..++..|+...+.....|..|-.....-+. .+..|++.|....+++.+..+.+-|..
T Consensus 160 K~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~fles~ie~qke~ie~We~flp~~ 233 (234)
T cd07665 160 KLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKNHIIKYLETLLHSQQQLVKYWEAFLPEA 233 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1111 1255566778889999999999999988886666666 699999999999999999999887764
No 67
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=98.77 E-value=7.1e-06 Score=68.02 Aligned_cols=193 Identities=16% Similarity=0.203 Sum_probs=134.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHHHHH
Q psy14114 32 DAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTAL 111 (248)
Q Consensus 32 ~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~aL 111 (248)
+.....++.+|-..++..-.|....-.|..-....| + -...|+..+..+++.-.+ ++..+|
T Consensus 10 d~q~K~i~~~i~~vEkhFg~lC~~~a~ytRKtArLR--D---------------k~D~lak~l~~yA~~E~~--~l~~~L 70 (219)
T PF06730_consen 10 DSQTKFIQDRITNVEKHFGELCQLFAAYTRKTARLR--D---------------KGDELAKQLQDYANTENP--NLKLGL 70 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--h---------------hhHHHHHHHHHHHhcCCc--cHhhHH
Confidence 566777788888888888888877777755321111 1 147888888888875433 566699
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH------HHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccch
Q psy14114 112 IKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLE------GEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNA 185 (248)
Q Consensus 112 ~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~------~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~ 185 (248)
..|++....|.+.+......++..|+.||..+=. .+++....+|.+--+.+--+|-+|.|.-..+. ...++
T Consensus 71 ~~fae~la~vqDYRqa~v~RlE~KVv~pL~~Y~~~cK~~r~elK~~~~ar~kEikq~~~Leklr~k~psdr~---~isqa 147 (219)
T PF06730_consen 71 KNFAECLAKVQDYRQAEVERLEAKVVEPLSQYGTICKHARDELKKFNKARNKEIKQLKQLEKLRQKNPSDRQ---IISQA 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch---hhhHH
Confidence 9999999999999999999999999999987754 34555555555544444444444443211100 01126
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114 186 ERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDLKNEL 246 (248)
Q Consensus 186 e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~~~L~~l~~~l 246 (248)
+.+|..|......++-.+...|.+|-.....-+. -|.+||.+++-||.+|+++|..--..+
T Consensus 148 e~el~kas~~~~rt~~~Lee~i~~FEkqKl~DlK~i~sdFv~iEM~fHaKALEv~T~a~q~i 209 (219)
T PF06730_consen 148 ESELQKASVDATRTTKQLEETIDNFEKQKLKDLKKIFSDFVTIEMVFHAKALEVYTAAYQDI 209 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888777777776777667776665555555 567999999999999999998755544
No 68
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=98.71 E-value=2.4e-05 Score=64.98 Aligned_cols=214 Identities=15% Similarity=0.158 Sum_probs=153.0
Q ss_pred HHHHHHHHhhhhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHH
Q psy14114 12 LSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLG 91 (248)
Q Consensus 12 ~~r~~Q~~~Ek~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg 91 (248)
|..+.+.+.|.+=+.-| +.|+=|.+--..++.+...+..++..+...... |-+.. .....+|
T Consensus 3 ~~~~~k~~de~~~~~~k-d~D~wFe~ek~~l~~~~~~Lk~~~~~~e~l~~~----rk~la-------------~~~~~~s 64 (218)
T cd07662 3 FKNVVKSADGVIVSGVK-DVDDFFEHERTFLLEYHNRVKDSSAKSDRMTRS----HKSAA-------------DDYNRIG 64 (218)
T ss_pred HHhhhhhhhHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------------HHHHHHH
Confidence 44455566777533334 567888888888888888887777777654321 11000 0135667
Q ss_pred HHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHH
Q psy14114 92 LDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNR 171 (248)
Q Consensus 92 ~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k 171 (248)
.++...|.. ..+.++.+|.++++++.+|......+...=.-.+-+-|.-++. ++..+...--..-+.-.+|+.|..-
T Consensus 65 ~sl~~L~~~--e~t~L~~~l~~laev~eki~~l~~~~A~~e~l~L~e~L~~Y~r-~~~A~Kdll~rR~r~l~~~enA~k~ 141 (218)
T cd07662 65 SSLYTLGTQ--DSTDICKFFLKVSELFDKTRKIEARVAADEDLKLSDLLKYYLR-ESQAAKDLLYRRSRSLVDYENANKA 141 (218)
T ss_pred HHHHHhccc--cchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776664 4678999999999999999888887766555555555555444 4444444444445566789999999
Q ss_pred HHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114 172 VRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDLKNEL 246 (248)
Q Consensus 172 ~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~~~L~~l~~~l 246 (248)
+.|+++...+...++..+..|+.+|++..+.++..|..|-..+...+. .|..|++.++.-.+..+++|.+....|
T Consensus 142 L~KaR~~~kev~~aE~~~~~a~~~Fe~IS~~aK~El~rF~~~Rv~~Fkk~Lv~y~E~~lkhak~~~~~~~~~~~~l 217 (218)
T cd07662 142 LDKARAKNKDVLQAETTQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQSCLAVL 217 (218)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 988875432222368889999999999999999999999987777776 999999999999999999998876543
No 69
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=98.63 E-value=2e-05 Score=64.08 Aligned_cols=185 Identities=12% Similarity=0.095 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHH
Q psy14114 41 RSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQK 120 (248)
Q Consensus 41 ~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ 120 (248)
-+..+...|..|++.+..|-.. ..... +....||..+.+.|..-+. .-|......|.+...
T Consensus 10 lfrsvq~t~~~Llk~i~~yq~~-----l~~ls------------q~e~~LG~fl~e~~~~d~t--~ag~~m~~t~KaL~~ 70 (204)
T cd07661 10 LFRSVQDTCLELLKIIDNYQER-----LCILS------------QEENVLGKFLKEQGKIDKT--TAGKMMAATGKALSF 70 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHH------------HHHHHHHHHHHHHhccChh--hhccHHHHHHHHHHH
Confidence 3455667788899999888542 11100 1247888888887764321 114445555555555
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhc----ccccccc----chHHHHHHH
Q psy14114 121 LGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKAR----SLLGTQS----NAERDLRIA 192 (248)
Q Consensus 121 ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak----~~~~~~~----~~e~el~~a 192 (248)
=|+-+...-.++ ..|...+.+|.+.-|..-....+.++..|.+||+++.-++... |+..... .+...++.+
T Consensus 71 sg~qrl~~r~pl-~~f~~~v~Tf~~rai~Dtl~Ti~~~E~aR~EY~a~~~~mk~~s~eldP~~~~~l~kfr~aQ~qvr~~ 149 (204)
T cd07661 71 SSQQRLALRVPL-LRLYQEVETFRERAIADTLQTIQRMEKCRTEYRAALLWMKSVSQELDPDTYKQLEKFRKAQAQVRSA 149 (204)
T ss_pred hHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHH
Confidence 555555555555 4778888999988899999999999999999999999997654 3222210 145678888
Q ss_pred HHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14114 193 QSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDLKNE 245 (248)
Q Consensus 193 ~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~~~L~~l~~~ 245 (248)
+.+|+.-.-++..-+.=+-.+....+. .|..|-.+-+.|+......++.+...
T Consensus 150 K~kfdkLk~Dv~qKvdlL~asR~n~ls~~L~~yqnal~~y~~kt~~~~~~i~~~ 203 (204)
T cd07661 150 KERFDKLKMDVCQKVDLLGASRCNLLSHALVTYQNTLLQFWEKTSRTMATIHEA 203 (204)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 899998887777666555557787887 89999999999999999999988764
No 70
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=98.52 E-value=2.3e-05 Score=64.70 Aligned_cols=187 Identities=12% Similarity=0.205 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCC-----CCCcHHHHHH
Q psy14114 38 LAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFG-----PGTTYGTALI 112 (248)
Q Consensus 38 lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~-----~~s~~g~aL~ 112 (248)
.|.++|..+..+.+|-..++...+- +.+. ..|.. ...+.....+|.++...|..|. ..++|..||.
T Consensus 2 ve~~~d~f~~f~~~md~svk~l~~~-----~~~~-~kk~~---~~~kkeyqk~G~af~~L~~af~~d~~~~~t~Ls~Al~ 72 (199)
T cd07626 2 VEQQVDAFKKFVKSMDDSVKNLINI-----AQEQ-AKKHQ---GPYKKEYQKIGQAFTSLGTAFELDETPTSVPLTQAIK 72 (199)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-HHHHh---hhhhHHHHHHHHHHHHHHHHHccCCCccchHHHHHHH
Confidence 5788999999999888888775442 1111 11111 1233345788888888876664 3457999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH--HHHHHHHHHHhhH-hhhhhhhHHHHHHHHhhccccccccchHHHH
Q psy14114 113 KVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLE--GEMKTIVKERSLL-ESKRLDLDSCKNRVRKARSLLGTQSNAERDL 189 (248)
Q Consensus 113 ~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~--~~~~~i~~~rkkl-~~~RLd~Daak~k~~kak~~~~~~~~~e~el 189 (248)
..|+++..||....++...=-..|.+-|..++- ..+|.|...++.- .++|- +.... .+.+. ...++
T Consensus 73 ~~g~~~e~Ig~l~~eQa~~D~~~l~E~L~eY~gll~~~pdi~~~~k~al~K~kE----~~r~~-----~egk~--~~~e~ 141 (199)
T cd07626 73 HTGQAYEEIGELFAEQPKHDLIPLLDGLHEYKGLLSTFPDIIGVHKGAVQKVKE----CERLV-----DEGKM--SSAEL 141 (199)
T ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHH----HHHHH-----Hhccc--cHHHH
Confidence 999999999999888766543334443333221 1455555444433 22221 11001 11111 34588
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 190 RIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDLKN 244 (248)
Q Consensus 190 ~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~~~L~~l~~ 244 (248)
+..+.+|+...-.+.+.|..+-......+. .+..|++.|..||++..+.|++...
T Consensus 142 ~ev~~r~d~IS~~~~aE~~~F~~eRv~Dfk~~m~~yLe~qI~fyqqI~~kl~~a~~ 197 (199)
T cd07626 142 EEVKRRTDVISYALLAEINHFHRERVRDFKSMMRNYLQQQIEFYQKIAAKLEEALA 197 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999998999999998775454444 8899999999999999999987654
No 71
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.43 E-value=2.1e-05 Score=65.77 Aligned_cols=109 Identities=13% Similarity=0.137 Sum_probs=82.6
Q ss_pred CCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhcccc-cc
Q psy14114 104 GTTYG-TALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLL-GT 181 (248)
Q Consensus 104 ~s~~g-~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~-~~ 181 (248)
|..|. .||..||+....+-.............++.||..|+..+|+.+.+.||+++...-.||++.+|.....+.+ +.
T Consensus 57 dqdYT~~al~~f~~~l~e~~~~ll~~~~~~~~~~~~pL~~f~k~~i~~~Ke~rk~Fd~~q~kyD~~L~r~~~~sk~K~p~ 136 (214)
T cd07609 57 DQDYTPLALKRFGDGLKDFWGGVLSALKGNDSLILDPLRSFVKSDIRPYKELRKNFEYYQRKYDSMLARYVAQSKTKEPS 136 (214)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChh
Confidence 44554 58999999999998776666666668999999999999999999999999999999999999987544332 21
Q ss_pred c-cchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14114 182 Q-SNAERDLRIAQSEFDRQAEITKLLLEGVQT 212 (248)
Q Consensus 182 ~-~~~e~el~~a~~~fe~~~e~~~~~m~~i~~ 212 (248)
. .+....|-.++..|-++.=+++..+..+..
T Consensus 137 ~l~Eda~qL~e~Rk~Y~~aSLDyv~qi~~lq~ 168 (214)
T cd07609 137 SLREDAFQLFEARKAYLKASLDLVIAIPQLRL 168 (214)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 114456778888887776555555544443
No 72
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=98.38 E-value=0.00052 Score=55.21 Aligned_cols=186 Identities=15% Similarity=0.222 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccC-CCCCcHHHHHHHHHHHHHH
Q psy14114 42 SDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAF-GPGTTYGTALIKVGQYEQK 120 (248)
Q Consensus 42 ~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~-~~~s~~g~aL~~~g~a~~~ 120 (248)
..+-|..-..|++-+++|+... .+- ......|+.-...||.+- ..+.+++.+-..||.+...
T Consensus 10 TRaaKhFQrdIVrgvEg~is~g--~Kq---------------~Ei~~KlaeDc~KYG~en~~~~~~LsrAa~~yG~a~~~ 72 (209)
T cd07607 10 TRAAKHFQRDIVRGVEGFISTG--SKQ---------------LEIGTKLAEDCKKYGSENPSVNTALSRASLHYGSARNQ 72 (209)
T ss_pred HHHHHHHHHHHHHHhhhhheec--hhH---------------HHHHHHHHHHHHHhccCCCCcccHHHHHHHHHhHHHHH
Confidence 3444556667777777776641 111 112467888888898764 3466799999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHHHH-HHHHHHHHHHhhHhhhhhhhHHHHHHHHh--hccccc-cccchHHHHHHHHHHH
Q psy14114 121 LGAAEREFVNSAHVSFVQPLQKFLE-GEMKTIVKERSLLESKRLDLDSCKNRVRK--ARSLLG-TQSNAERDLRIAQSEF 196 (248)
Q Consensus 121 ia~~~~~~~~~~~~~~l~pL~~~l~-~~~~~i~~~rkkl~~~RLd~Daak~k~~k--ak~~~~-~~~~~e~el~~a~~~f 196 (248)
|...+..+.-.+...|.+||+..+. .-+.++...-.+.++.|.+-++--..+.+ ++-.++ -.++.-..|+.|+.+.
T Consensus 73 mEkEre~l~r~l~~QV~ePLRaMv~GaPLEDARhL~qrYdRmRQeaE~qa~eV~RRq~k~res~~~~e~~~KL~~AE~Kl 152 (209)
T cd07607 73 MEKERENLHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEVEAQAAEVARRRSKDKESGGNPDNAAKLQSAESKL 152 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999885 34556777777778888877776666542 221111 0011334677888887
Q ss_pred HHHH-------HHHHHHHHhhhhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 197 DRQA-------EITKLLLEGVQTS-HTSHLRCLHEFVEAQVNYYANCHKIMQDLKN 244 (248)
Q Consensus 197 e~~~-------e~~~~~m~~i~~~-e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~ 244 (248)
.+.. .++...|-.+-.. .--.+..|.++|++...||+...++|.+|..
T Consensus 153 ~elks~M~~LGKEA~aAm~aVEaQQQrlTlqRL~amVeaEr~Yhqrv~~ILd~l~~ 208 (209)
T cd07607 153 DELKSSMNTLGKEATSAMLAVEDQQQQVTLQRLLAMVEAERAYHQRAADILDKLHD 208 (209)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7654 2444455443332 1224568899999999999999999999864
No 73
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=98.38 E-value=0.00012 Score=60.58 Aligned_cols=158 Identities=11% Similarity=0.121 Sum_probs=106.8
Q ss_pred hHHHHHHHHhccc---CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHh----h
Q psy14114 88 EYLGLDMTEAGNA---FGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLE----S 160 (248)
Q Consensus 88 ~~Lg~~m~~~~~~---~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~----~ 160 (248)
....+++...|.. .+..-.+|.+|..+++++.+|..-..+........+|.||.+-++-|++-+...+|+.+ +
T Consensus 44 ~~y~dal~Kige~A~~s~~SkeLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE~k~elD~kyi~a~~Kkyq~E~k~ 123 (226)
T cd07645 44 KAYYDGVAKIGEIAAVSPVSKELGHVLMEISDVHKKLNDSLEENFKKFHREIIAELERKTDLDVKYMTATLKRYQTEHKN 123 (226)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555542 33345699999999999999999888889999999999999999999999999998875 4
Q ss_pred hhhhhHHHHHHHHhhcccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccc--------h----hHHHHHHHHHH
Q psy14114 161 KRLDLDSCKNRVRKARSLL-GTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHT--------S----HLRCLHEFVEA 227 (248)
Q Consensus 161 ~RLd~Daak~k~~kak~~~-~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~--------e----~~~~L~~lv~a 227 (248)
+.-.||-+.+.++|.++.. .... + ...+.-+.+|.+....-...|.+++.... - .++-=..+...
T Consensus 124 k~dsLeK~~seLKK~RRKsqg~kn-~-~kye~Ke~~~~e~~~~~q~el~~f~~~~~k~AL~EErRRycFlvdkhC~~~~~ 201 (226)
T cd07645 124 KLDSLEKSQADLKKIRRKSQGRRN-A-SKYEHKENEYLETVTSRQSDIQKFIADGCREALLEEKRRFCFLVDKHCSFSNH 201 (226)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCC-c-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888887654321 1010 1 11222233444444444444444433200 0 01112678888
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q psy14114 228 QVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 228 Q~~y~~~~~~~L~~l~~~l~ 247 (248)
-+.||.++.++|.+=.|.|.
T Consensus 202 ~~~yh~k~~~lL~~klp~Wq 221 (226)
T cd07645 202 IHYFHQQAAELLNSKLPVWQ 221 (226)
T ss_pred HHHHHHHHHHHHHhhChHHH
Confidence 89999999999999888885
No 74
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=98.35 E-value=0.00016 Score=60.30 Aligned_cols=158 Identities=11% Similarity=0.148 Sum_probs=103.8
Q ss_pred hHHHHHHHHhcccC---CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHh----h
Q psy14114 88 EYLGLDMTEAGNAF---GPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLE----S 160 (248)
Q Consensus 88 ~~Lg~~m~~~~~~~---~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~----~ 160 (248)
..+.+++...|..- ...-.+|.+|..+++.+..|..-...+.......+|.||..-++-|++-+....|+++ +
T Consensus 46 ~~y~dAl~Kige~A~~s~gSkeLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pLE~k~E~D~k~i~a~~Kky~~e~k~ 125 (232)
T cd07646 46 KGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLTAALKKYQTEHRS 125 (232)
T ss_pred HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555421 1134699999999999999999999999999999999999999999999999999883 4
Q ss_pred hhhhhHHHHHHHHhhccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHhhhhc--------cch----hHHHHHHHHHH
Q psy14114 161 KRLDLDSCKNRVRKARSLLG-TQSNAERDLRIAQSEFDRQAEITKLLLEGVQTS--------HTS----HLRCLHEFVEA 227 (248)
Q Consensus 161 ~RLd~Daak~k~~kak~~~~-~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~--------e~e----~~~~L~~lv~a 227 (248)
+--.||-|++.++|.++... .. =....+.-+.+|.+....-...|.++... |-- .++.=..+.+.
T Consensus 126 k~~sleK~qseLKKlRrKsqg~k--~~~ky~~ke~q~~~~~~~~q~ele~f~~~~~k~Al~EErRRycflvdk~C~~~~~ 203 (232)
T cd07646 126 KGESLEKCQAELKKLRKKSQGSK--NPQKYSDKELQYIEAISNKQGELENYVSDGYKTALTEERRRYCFLVEKQCAVAKN 203 (232)
T ss_pred HHHHHHHHHHHHHHHHHhhccCC--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678999998876542211 00 01111222222333222222333333221 000 11122677888
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q psy14114 228 QVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 228 Q~~y~~~~~~~L~~l~~~l~ 247 (248)
-+.||..+.++|.+=.|.|.
T Consensus 204 ~~~yh~k~~~lL~~kl~~Wq 223 (232)
T cd07646 204 SIAYHSKGKELLTQKLPSWQ 223 (232)
T ss_pred HHHHHHHHHHHHHhhchHHH
Confidence 89999999999999888885
No 75
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=98.30 E-value=0.001 Score=56.03 Aligned_cols=140 Identities=19% Similarity=0.280 Sum_probs=92.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhh----hhhhhHHHHHHHHhh-cccc
Q psy14114 105 TTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLES----KRLDLDSCKNRVRKA-RSLL 179 (248)
Q Consensus 105 s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~----~RLd~Daak~k~~ka-k~~~ 179 (248)
-.+|.+|..++..+..|..-+..+...+...|+.||...++.+.+.+....|..++ ++-.++-+.+.+.|. ++..
T Consensus 54 ~~lG~~L~~~s~~~r~i~~~~~~~~~~~~~~li~pLe~~~e~d~k~i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~ 133 (219)
T PF08397_consen 54 KELGDALMQISEVHRRIENELEEVFKAFHSELIQPLEKKLEEDKKYITQLEKDYEKEYKRKRDELKKAESELKKLRKKSR 133 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 36999999999999999999999999999999999999999898888877765543 333333333333221 1111
Q ss_pred -cccc---chHH---HHHHHHHHHHHHHHHHHHHHHhhhhc---cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14114 180 -GTQS---NAER---DLRIAQSEFDRQAEITKLLLEGVQTS---HT-SHLRCLHEFVEAQVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 180 -~~~~---~~e~---el~~a~~~fe~~~e~~~~~m~~i~~~---e~-e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l~ 247 (248)
+... .+.+ .+..-..+++.... ..+.+.+.- .. -.++.+..|++..+.||.++.++|....+.|.
T Consensus 134 kgk~~~~~~~~~~~~~v~~~~~ele~~~~---~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~w~ 209 (219)
T PF08397_consen 134 KGKDDQKYELKEALQDVTERQSELEEFEK---QSLREALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLDDWQ 209 (219)
T ss_dssp CCTSCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 1110 0122 23333344443322 122222221 12 24567899999999999999999999999885
No 76
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=98.30 E-value=0.00044 Score=58.20 Aligned_cols=144 Identities=19% Similarity=0.190 Sum_probs=99.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhH----hhhhhhhHHHHHHHHhhccc-
Q psy14114 104 GTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLL----ESKRLDLDSCKNRVRKARSL- 178 (248)
Q Consensus 104 ~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl----~~~RLd~Daak~k~~kak~~- 178 (248)
.-.+|.+|..++..+..|..-...+...+...++.||..-++.+.+.+....|+. .++|-+++-+.+.+.|..+.
T Consensus 63 sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pLe~k~e~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs 142 (223)
T cd07605 63 SQELGEALKQIVDTHKSIEASLEQVAKAFHGELILPLEKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKS 142 (223)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3479999999999999999999999999999999999999998888888777644 45667888888776654221
Q ss_pred ----cccc----cchHHHHHHHHHHHHHHH-HHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14114 179 ----LGTQ----SNAERDLRIAQSEFDRQA-EITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 179 ----~~~~----~~~e~el~~a~~~fe~~~-e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l~ 247 (248)
.++. ..+-+++...+..++... +.++..|..--..-.-.++.+..|++....||..+..+|....|.|.
T Consensus 143 ~~~~~~k~~~~l~~~~e~v~~k~~ele~~~~~~lr~al~EERrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~~l~~w~ 220 (223)
T cd07605 143 QKSGTGKYQEKLDQALEELNDKQKELEAFVSQGLRDALLEERRRYCFLVDKHCSVAKHEIAYHAKAMTLLSTRLPLWQ 220 (223)
T ss_pred cccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 0010 012233333333333322 11222222111122445668899999999999999999999999885
No 77
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.24 E-value=0.00071 Score=57.18 Aligned_cols=156 Identities=8% Similarity=0.049 Sum_probs=110.5
Q ss_pred hhHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhH
Q psy14114 87 LEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLD 166 (248)
Q Consensus 87 ~~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~D 166 (248)
...||.++...|..- ....+|.++.++|.+...++.....+...-..+|-+||..++. ++-.+..+--.....--+|-
T Consensus 55 ~~dfg~~l~~Ls~~E-~~~~L~~a~~kLg~v~~~v~dl~~~QA~~d~~tl~d~L~~~~~-~~~~vKealtnR~~~~re~~ 132 (230)
T cd07625 55 EADFGQKLIQLSVEE-THHGLGNLYEKFGKVLTAVGDIDSIQATVDMATLYDGLEWISR-DAYVVKEALTNRHLLMRELI 132 (230)
T ss_pred HHHHHHHHHHHhhhc-ccchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 467777777766532 3468999999999999999999999999999999999998887 66666555444444444554
Q ss_pred HHHHHHHhh---------ccc-cc-cccchHHHH-------HHHHHHHHHHHHHHHHHHHhhhhc-cchhHHHHHHHHHH
Q psy14114 167 SCKNRVRKA---------RSL-LG-TQSNAERDL-------RIAQSEFDRQAEITKLLLEGVQTS-HTSHLRCLHEFVEA 227 (248)
Q Consensus 167 aak~k~~ka---------k~~-~~-~~~~~e~el-------~~a~~~fe~~~e~~~~~m~~i~~~-e~e~~~~L~~lv~a 227 (248)
.|.+.+.+. ++. .+ +.+++..+| ..++.+|+.........+..+... ..+.-..|.+|+..
T Consensus 133 qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~ 212 (230)
T cd07625 133 QAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLR 212 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443211 110 01 111133344 445668888888888888887775 45555599999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14114 228 QVNYYANCHKIMQDLKN 244 (248)
Q Consensus 228 Q~~y~~~~~~~L~~l~~ 244 (248)
|..|+.+....|+.+.+
T Consensus 213 ~ie~erk~l~~lE~~r~ 229 (230)
T cd07625 213 KIEYERKKLSLLERIRL 229 (230)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999998765
No 78
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=97.98 E-value=0.001 Score=56.51 Aligned_cols=193 Identities=10% Similarity=0.173 Sum_probs=119.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCC-----CCc
Q psy14114 32 DAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGP-----GTT 106 (248)
Q Consensus 32 ~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~-----~s~ 106 (248)
+-+..+.|.++|.....+..|-+.++....- ..+ +..+..+ ..+.....+|.++...|..|.. ..+
T Consensus 33 ~ld~~~ve~~~e~f~~F~k~Md~sv~~l~~~-----~~~-~~kk~~~---~~kkE~qkiG~af~~Ls~afe~d~~~~~~~ 103 (237)
T PF10456_consen 33 PLDPQDVESQVESFKKFTKSMDDSVKQLSSV-----ANE-FAKKHQG---PFKKEYQKIGQAFQSLSQAFELDQQQASMP 103 (237)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHTT---HHHHHHHHHHHHHHHHHHHHTTS--SSHCH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHhh---hhHHHHHHHHHHHhHHHHHHhcCCchhhhH
Confidence 4679999999999999999988888765431 100 1111110 1111245777777776665532 356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhcc--cccc
Q psy14114 107 YGTALIKVGQYEQKLGAAEREFVNSAHVSFVQP---LQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARS--LLGT 181 (248)
Q Consensus 107 ~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~p---L~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~--~~~~ 181 (248)
|..||...|.++..||..-.++-..=-..+++- -+.+|. .+|.|...-| .|.+|++-+.+ .+.+
T Consensus 104 L~~Al~~tg~~y~~Ig~l~~~Qpk~D~~pl~d~L~~Y~GlL~-~~pdii~~hk----------~A~~k~ke~~kl~~e~K 172 (237)
T PF10456_consen 104 LTNALKHTGDTYEEIGDLFAEQPKNDLIPLLDCLKEYRGLLS-NFPDIISVHK----------GALQKVKECEKLSDEGK 172 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSGGGTHHHHHHHHHHHHHHHH-THHHHHHHHH----------HHHHHCTCHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhHh-hCccHHHHHH----------HHHHHHHHHHHHHhccC
Confidence 899999999999999998766533211111111 122333 4555554444 34444432211 1122
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114 182 QSNAERDLRIAQSEFDRQAEITKLLLEGVQTSH-TSHLRCLHEFVEAQVNYYANCHKIMQDLKNEL 246 (248)
Q Consensus 182 ~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e-~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l 246 (248)
. ...++.....+-+-..-.+.+.|..+-... .++-..+..|+..|..||++..+.|++....+
T Consensus 173 ~--~~~~~~~v~~R~d~is~a~lAEm~hfh~~r~~Df~~~m~~yL~~Qi~Fyq~i~~kLe~a~~~f 236 (237)
T PF10456_consen 173 M--SQQEAEEVQRRCDVISYAVLAEMNHFHQERVEDFKSMMKTYLQQQIAFYQQIAEKLEQALQQF 236 (237)
T ss_dssp S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 345666666666666667888888888754 45555889999999999999999999987664
No 79
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=97.97 E-value=0.0016 Score=53.60 Aligned_cols=190 Identities=11% Similarity=0.157 Sum_probs=118.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcC-CCCCCchhHHHHHHHHhcccCCC-----CC
Q psy14114 32 DAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKR-PSRLSNLEYLGLDMTEAGNAFGP-----GT 105 (248)
Q Consensus 32 ~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~-~~~~~~~~~Lg~~m~~~~~~~~~-----~s 105 (248)
|=|..+.|.++|..+..+.+|-..++...+. ..+ ..++. .+.+.....+|.++...+..|.. .+
T Consensus 4 ~Ld~~~VE~kid~f~~F~k~MD~svk~l~~~-----~~e-----~~kk~~~~~KkEyqkiG~af~~LsqaFe~d~~~~~~ 73 (210)
T cd07668 4 DLDLVEIEQKCEAVGRFTKAMDDGVKELLTV-----GQE-----HWKRCTGPLPKEYQKIGKALQSLATVFSTSGYQGET 73 (210)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-----HHHHHcccccHHHHHHHHHHHHHHHHHhcCCcccch
Confidence 4567899999999999999999988875442 111 11111 12333456788877777766533 34
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHH------HHHHHHHHhhHhhhhhhhHHHHHHHHhhccc-
Q psy14114 106 TYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGE------MKTIVKERSLLESKRLDLDSCKNRVRKARSL- 178 (248)
Q Consensus 106 ~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~------~~~i~~~rkkl~~~RLd~Daak~k~~kak~~- 178 (248)
.|..|+...|.++..||+.-.++-..= +.||...|..+ +|+|...-| .|-.|++-..+.
T Consensus 74 ~L~~Ai~~tg~~y~~IG~~faeQpk~D----l~pl~d~L~~Y~G~L~~fPDIi~v~K----------gA~~KvkE~~k~~ 139 (210)
T cd07668 74 DLNDAITEAGKTYEEIASLVAEQPKKD----LHFLMETNHEYKGFLGCFPDIIGAHK----------GAIEKVKESDKLV 139 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhh----hHHHHHHHHHHhCccccCccHHHHHH----------HHHHHHHHHHHHh
Confidence 688999999999999999887765432 55666666522 444443322 223333221111
Q ss_pred -cccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14114 179 -LGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHT-SHLRCLHEFVEAQVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 179 -~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~-e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l~ 247 (248)
+.+- .-.+.+....+-+-..=.+.+.|..+-.... +.-..+..|+..|..||+...+.|.+.....+
T Consensus 140 ~egkm--~~~~~~~v~~R~dviSya~~AEm~HFh~~r~~d~k~~M~~yL~eQi~Fyq~v~~kl~~~l~~y~ 208 (210)
T cd07668 140 ATSKI--TLQDKQNMVKRVSTMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFP 208 (210)
T ss_pred hhccc--hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1110 1123333444444444456677888766534 44448899999999999999999998876653
No 80
>KOG1451|consensus
Probab=97.94 E-value=0.0016 Score=60.98 Aligned_cols=194 Identities=13% Similarity=0.195 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhccc-CC-----CCCcHHH
Q psy14114 36 ESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNA-FG-----PGTTYGT 109 (248)
Q Consensus 36 ~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~-~~-----~~s~~g~ 109 (248)
..-|..+|..-+.+..|++.++..+.. .+ +++ ...-.+++++.+.-=+ +| ++-....
T Consensus 23 ~~he~el~~tnkfik~~ikdg~~li~a---~k-------nls-------~a~~kfa~tl~~f~f~~igd~~tdde~~ia~ 85 (812)
T KOG1451|consen 23 KCHEVELDRTNKFIKELIKDGKELISA---LK-------NLS-------SAVRKFAQTLQEFKFECIGDAETDDEIFIAT 85 (812)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHH---HH-------HHH-------HHHHHHHHHHHhheeeeccccccchHHHHHH
Confidence 456778888888888888887765442 00 010 1124566666654321 12 2234778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHh--hccccccccchHH
Q psy14114 110 ALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRK--ARSLLGTQSNAER 187 (248)
Q Consensus 110 aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~k--ak~~~~~~~~~e~ 187 (248)
+|..||....++.+.+..+.......++.||.+|=...|-...+.+||.++----|-....|.-. .++ +....+++.
T Consensus 86 slkefa~ll~~ve~er~~~v~~Ase~li~PlekFRkEqIG~~KE~KkKydKe~ekfy~~LekHLhLSskk-esqlqeAD~ 164 (812)
T KOG1451|consen 86 SLKEFASLLNQVEDERMRMVGNASESLIEPLEKFRKEQIGTLKEEKKKYDKESEKFYQTLEKHLHLSSKK-ESQLQEADA 164 (812)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHhhhhHHHHhhhhhhhHHHHHHHHHHhccccch-hhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999998877777766666432 122 222112566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14114 188 DLRIAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 188 el~~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l~ 247 (248)
.++..+..|-++.=+++.....+.+ +..+++.-|.+|+.....||.-++++-.+..|..+
T Consensus 165 Qvd~~r~nFfe~SL~YV~~vQeVQErk~FefVEpllafl~slf~f~h~g~el~qDF~pfk~ 225 (812)
T KOG1451|consen 165 QVDTQRKNFFEASLQYVAEVQEVQERKRFEFVEPLLAFLYSLFSFFHVGSELHQDFKPFKD 225 (812)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHhhhhhHHH
Confidence 7777766666655566667777777 47889999999999999999999999988877643
No 81
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=97.93 E-value=0.0036 Score=51.36 Aligned_cols=149 Identities=13% Similarity=0.201 Sum_probs=98.3
Q ss_pred hHHHHHHHHhcccC--CCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHh----h
Q psy14114 88 EYLGLDMTEAGNAF--GPGT-TYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLE----S 160 (248)
Q Consensus 88 ~~Lg~~m~~~~~~~--~~~s-~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~----~ 160 (248)
.....++...|..- ++.| .+|.+|..+++++.+|..-........+..++.||.+-++-|.+-+...+|+.+ +
T Consensus 44 ~~Yf~Al~KiGe~A~~s~~s~~LG~vLmqisev~r~i~~~le~~lk~FH~ell~~LEkk~elD~kyi~~s~KkYq~E~r~ 123 (215)
T cd07644 44 EVYFSAIAKIGEQALQSLTSQSLGEILIQMSETQRKLSADLEVVFQTFHVDLLQHMDKNTKLDMQFIEDSRRVYELEYRH 123 (215)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44456666666532 2333 599999999999999998888888899999999999999999999988888875 3
Q ss_pred hhhhhHHHHHHHHhhcccccccc-chHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----------cchhH-HHHHHHHHH
Q psy14114 161 KRLDLDSCKNRVRKARSLLGTQS-NAERDLRIAQSEFDRQAEITKLLLEGVQTS-----------HTSHL-RCLHEFVEA 227 (248)
Q Consensus 161 ~RLd~Daak~k~~kak~~~~~~~-~~e~el~~a~~~fe~~~e~~~~~m~~i~~~-----------e~e~~-~~L~~lv~a 227 (248)
+--.|+-+.+.+++-++-..+.. ...+-++.- ...|.++++. +.-++ +--..+.+-
T Consensus 124 k~dsleK~~selkk~rrk~qkn~~e~kE~~~~l-----------q~~~~~f~~~~~k~Al~eErRRy~Flvek~c~~~k~ 192 (215)
T cd07644 124 RAANLEKCMSELWRMERQRDRNVREMKENVNRL-----------RQSMQAFLKESQRAAELEEKRRYRFLAEKHYLLNNT 192 (215)
T ss_pred hhhhHHHHHHHHHHHHHhhcCCchhhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888775544221110110 011112221 2233333331 11111 123677888
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q psy14114 228 QVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 228 Q~~y~~~~~~~L~~l~~~l~ 247 (248)
-+.||.+|.++|+.-.|.|+
T Consensus 193 ~~~yh~ka~~ll~~kl~~Wq 212 (215)
T cd07644 193 FLQFQSRARGMLQTRVPSWK 212 (215)
T ss_pred HHHHHHHHHHHHHhcCchhc
Confidence 89999999999999988885
No 82
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=97.83 E-value=0.0035 Score=51.62 Aligned_cols=188 Identities=11% Similarity=0.161 Sum_probs=113.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCC-----CCc
Q psy14114 32 DAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGP-----GTT 106 (248)
Q Consensus 32 ~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~-----~s~ 106 (248)
+-|..+.|.++|..+..+.+|-..++...+. ..+ +..|.. ...+.....+|.++...|..|.. .+.
T Consensus 4 ~Ld~~~Ve~kid~f~~F~k~MD~svk~l~~~-----~~e-~~kk~~---~~~kkEyqkiG~af~~LsqaFe~d~~~~s~~ 74 (207)
T cd07669 4 HQDLQDVEERVDVFKAFSKKMDDSVLQLSNV-----ASE-LVRKHL---GGFRKEFQKLGNAFQAISHSFQLDPPYSSEA 74 (207)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHc---ccccHHHHHHHHHHHHHHHHHhcCCCccchH
Confidence 3467899999999999999999988875442 111 111111 12333456788877777766643 245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHH------HHHHHHHHhhHhhhhhhhHHHHHHHHhhccc--
Q psy14114 107 YGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGE------MKTIVKERSLLESKRLDLDSCKNRVRKARSL-- 178 (248)
Q Consensus 107 ~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~------~~~i~~~rkkl~~~RLd~Daak~k~~kak~~-- 178 (248)
+..|+...|.++..||..-.++-..= +.||...|..+ +|.|...-| .|-.|++-..+-
T Consensus 75 L~~Av~~tG~~y~~IG~~faeQpk~D----~~pl~d~L~~Y~GlL~~fPDii~v~K----------~A~~KvkE~~k~~~ 140 (207)
T cd07669 75 LNNAISHTGRTYEAVGEMFAEQPKND----LFQMLDTLSLYQGLLSNFPDIIHLQK----------GAFAKVKESQRMSD 140 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhh----hhHHHHHHHHHhCcccCCccHHHHHH----------HHHHHHHHHHHhhH
Confidence 88899999999999999887765432 45666666522 444443322 222222211100
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 179 LGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSH-TSHLRCLHEFVEAQVNYYANCHKIMQDLKN 244 (248)
Q Consensus 179 ~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e-~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~ 244 (248)
+.+- .-.+......+-+-..=.+.+.|..+-... .+.-..+..|+..|..||+...+.|++..+
T Consensus 141 e~Km--~~~~~~~v~~R~~~isya~~AEm~HFh~~r~~d~k~~M~~yL~eQi~Fyq~v~~kle~al~ 205 (207)
T cd07669 141 EGRM--DQDEADGIRKRCRVVGFALQAEMNHFHQRRELDFKQMMQHYLRQQIIFYQRVSQQLEKTLR 205 (207)
T ss_pred Hhhh--hhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0110 111222333333333345666787776653 444558899999999999999999987654
No 83
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.80 E-value=0.0047 Score=50.76 Aligned_cols=187 Identities=12% Similarity=0.180 Sum_probs=114.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcC-CCCCCchhHHHHHHHHhcccCCC-----CC
Q psy14114 32 DAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKR-PSRLSNLEYLGLDMTEAGNAFGP-----GT 105 (248)
Q Consensus 32 ~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~-~~~~~~~~~Lg~~m~~~~~~~~~-----~s 105 (248)
|-|..+.|.++|..+..+.+|-..+....+- ..+ .+++. ...+...-.+|.++...+..|.. .+
T Consensus 4 ~Ld~~~VE~kid~f~~F~k~Md~sv~~l~~~-----~~e-----~~kk~~~~~KkEyqkiG~af~~LsqaF~~d~~~~s~ 73 (207)
T cd07670 4 VLDLQDVESRIDGFKAFTKKMDESVLQLNHT-----ANE-----FARKQVTGFKKEYQKVGQSFKGLSQAFELDQQAFSA 73 (207)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-----HHHHHhccccHHHHHHHHHHHHHHHHHccCCcccch
Confidence 3467889999999999999999988876542 111 11111 12333456777777776665543 34
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHH------HHHHHHHHhhHhhhhhhhHHHHHHHHhhccc-
Q psy14114 106 TYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGE------MKTIVKERSLLESKRLDLDSCKNRVRKARSL- 178 (248)
Q Consensus 106 ~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~------~~~i~~~rkkl~~~RLd~Daak~k~~kak~~- 178 (248)
++..|+...|.++..||+.-.++-.. =+.||...|..+ ||.|...-| .|-.|++-..+.
T Consensus 74 ~L~~Av~~tg~~y~~IG~~faeQpk~----Dl~Pl~d~L~~Y~G~L~~fPDii~v~K----------gA~~KvKE~~k~~ 139 (207)
T cd07670 74 GLNQAIAFTGEAYEAIGELFAEQPRQ----DLDPVMDLLALYQGHLANFPDIIHVQK----------GALTKVKESKKHV 139 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchh----hhHHHHHHHHHHhCccccCCchHHHhH----------HHHHHHHHHHHHH
Confidence 68899999999999999987766432 256776666622 444443322 233333322111
Q ss_pred -cccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 179 -LGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDLKN 244 (248)
Q Consensus 179 -~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~~~L~~l~~ 244 (248)
+.+- --.+.+....+-+-..=.+.+.|..+-......+. .+..|+..|..||+.....|.+...
T Consensus 140 ~egkm--~~~~~~~v~~R~dviSya~~AEm~HFh~~r~~d~k~~M~~yL~~QI~Fyq~v~~kl~~~l~ 205 (207)
T cd07670 140 EEGKM--ELQKADGIQDRCNIISFATLAEIHHFHKIRVRDFKSQMQHFLQQQIRFFQKVTQKLEEALQ 205 (207)
T ss_pred Hhhcc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000 00122222233333333456678887665454554 7899999999999999999987654
No 84
>cd07608 BAR_ArfGAP_fungi The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized fungal Arf GAP proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of uncharacterized fungal proteins containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and an Arf GTPase Activating Protein (GAP) domain. These proteins may play roles in Arf-mediated functions involving membrane dynamics. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.71 E-value=0.0097 Score=48.71 Aligned_cols=186 Identities=13% Similarity=0.169 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHHHHHHH-
Q psy14114 35 FESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIK- 113 (248)
Q Consensus 35 ~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~aL~~- 113 (248)
+..||+++..++..+.++++........-- .. ....+-..+.+++..-+ ...+|..
T Consensus 3 ~~~le~kt~~mr~~~Kkl~kr~~~~~ea~~----~~---------------~~~~f~~ll~~~~~~~~----~~~al~~y 59 (192)
T cd07608 3 LSNLERKTRLLRSYLKRLIKRIVKLIEAQD----QL---------------VDLEFNELLSEAKFKND----FNVALDSY 59 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH---------------HHHHHHHHHHHhhcccc----ccHHHHHH
Confidence 578999999999999999998876543200 00 01222233333332211 1124443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH-HHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHHHHH
Q psy14114 114 VGQYEQKLGAAEREFVNSAHVSFVQPLQKFLE-GEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIA 192 (248)
Q Consensus 114 ~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~-~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el~~a 192 (248)
+......|......-.......+++|+..+.. .+++.+..-+|.++.--=||=+..+|+=..+..+ +. .+..+-.-
T Consensus 60 f~~~~~~~~~~~~~~~~~lq~~~iep~~~~y~~~dik~~~~kkK~FEeeSKdYYs~l~kYLsn~~~~-k~--~DSK~l~K 136 (192)
T cd07608 60 FDPFLLNLAFFLRDVCQDLQLKKIEPLLKIYSINDIKELSDKKKDFEEESKDYYSWLSKYLSNESDK-KR--PDSKLLAK 136 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhhhHHHHhHHHHHHHHHHhcccccc-cC--cchHHHHH
Confidence 44556667777777777888899999999998 9999999999999999999999999985432111 11 45667777
Q ss_pred HHHHHHHHHHHHHHHHhhhhc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114 193 QSEFDRQAEITKLLLEGVQTS--HTSHLRCLHEFVEAQVNYYANCHKIMQDLKNEL 246 (248)
Q Consensus 193 ~~~fe~~~e~~~~~m~~i~~~--e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l 246 (248)
+-.||=+.-+..+-|..+... +.+.+..|..|+..|...|-.....+..+.|+|
T Consensus 137 Rk~FEL~RFDY~~~mqdl~ggr~~qell~~L~kf~~~q~~~~~~~~~~i~~~~p~L 192 (192)
T cd07608 137 RKTFELSRFDYLNYLQDLHGGRKEQELLSILTKFINQQYDSIALTSNKIDALRPSL 192 (192)
T ss_pred HHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHhHhhhHHhhccCC
Confidence 888999999999999998885 667888999999999998887777677766653
No 85
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=97.67 E-value=0.028 Score=48.08 Aligned_cols=72 Identities=11% Similarity=0.162 Sum_probs=51.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH---------------------HHHHHHHHHHhhHhhhhh
Q psy14114 105 TTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLE---------------------GEMKTIVKERSLLESKRL 163 (248)
Q Consensus 105 s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~---------------------~~~~~i~~~rkkl~~~RL 163 (248)
.++..++..+-.....+|..+..+...+...+..||..|.. .-+.++.++|++.+...-
T Consensus 61 ~s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~k 140 (251)
T cd07653 61 FSSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFK 140 (251)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666667778888888888888888899888865 234456666777777777
Q ss_pred hhHHHHHHHHhhc
Q psy14114 164 DLDSCKNRVRKAR 176 (248)
Q Consensus 164 d~Daak~k~~kak 176 (248)
+.+.|+.++.++.
T Consensus 141 e~~~a~~k~~~~~ 153 (251)
T cd07653 141 EAEKAKQKYEKAD 153 (251)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777776543
No 86
>KOG4270|consensus
Probab=97.46 E-value=1e-05 Score=76.07 Aligned_cols=137 Identities=19% Similarity=0.152 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhcccccc-----
Q psy14114 107 YGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGT----- 181 (248)
Q Consensus 107 ~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~----- 181 (248)
+|+++..||.+...++.....+.......+..|+.+++...++++.+++|++.++-.|||+-+.++..+.+.-..
T Consensus 2 ~~~~~~~~~~~~~~~a~~~~~~~~~~e~~~~~pl~~~~e~~l~~~~~~ek~~~~r~~~~~~~~~~~~~~~~s~~~~~~~~ 81 (577)
T KOG4270|consen 2 LQKALSGCGSAENQAATELIQKELFVEIKVVFPLRKIIEVELPNIRKEEKNLQRRVSDMDSEQLRLFQAQKSSGEEGLFR 81 (577)
T ss_pred chhhcccCcchhhhhhhccccceeeccccccCcccchhhhhhhHHHHHHHHHHhhhhhcchhhhhhhhhhhhhhhccccc
Confidence 577888999999999999999999999999999999999999999999999999999999999999765432111
Q ss_pred -----ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 182 -----QSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKN 244 (248)
Q Consensus 182 -----~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~ 244 (248)
...+.++.+.+..+++...+.+...|.++...+.+++ .|..+++.|-.||.++...+..+-+
T Consensus 82 ~~~~~~~~~~~e~e~~~~kie~~~d~~~~~~~~f~~~~~~~~-f~~~~~e~q~~~~rrals~~~~vfg 148 (577)
T KOG4270|consen 82 LPGAKIDTLKEEEEECGMKIEQPTDQRHADHVTFDRKEGEYL-FLGLPVEFQPDYHRRALSASETVFG 148 (577)
T ss_pred cCcchhhhhhchHHhhcCccccCcchhhhhhhhhhhhcchhh-hccchhhhccccccccccchhhhhc
Confidence 1125567788888999999999999999999999999 9999999999999998877765543
No 87
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=97.31 E-value=0.078 Score=44.42 Aligned_cols=47 Identities=21% Similarity=0.305 Sum_probs=42.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q psy14114 105 TTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTI 151 (248)
Q Consensus 105 s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i 151 (248)
-.+|.+|..++..+..|..-...|...+...++.||+.-++..-+.+
T Consensus 67 kElG~~Ltri~~~hr~iE~~lk~f~~~L~~~lI~pLe~k~E~wkk~~ 113 (231)
T cd07643 67 KEIGSALTRMCMRHKSIETKLKQFTSALMDCLVNPLQEKIEEWKKVA 113 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999555554
No 88
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=96.57 E-value=0.4 Score=40.82 Aligned_cols=88 Identities=17% Similarity=0.173 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhH
Q psy14114 139 PLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHL 218 (248)
Q Consensus 139 pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~ 218 (248)
.|+.-+..-+.++.+.+++.++.--+...|+.++.++-.... . .+.+++.|+.+|.+..- .|.. .+-+++
T Consensus 116 kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~~~~-~--~~~~~eKak~k~~~~~~----k~~~---akNeY~ 185 (237)
T cd07657 116 QIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVVKGG-R--GGRKLDKARDKYQKACR----KLHL---CHNDYV 185 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-c--chhhHHHHHHHHHHHHH----HHHH---HHHHHH
Confidence 334444556677788888888888888888888877633221 1 35578888888875542 2222 346788
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14114 219 RCLHEFVEAQVNYYANCH 236 (248)
Q Consensus 219 ~~L~~lv~aQ~~y~~~~~ 236 (248)
..|..+-..|-.||....
T Consensus 186 l~l~~aN~~q~~yY~~~l 203 (237)
T cd07657 186 LALLEAQEHEEDYRTLLL 203 (237)
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 888888888888887643
No 89
>KOG3651|consensus
Probab=96.54 E-value=0.19 Score=43.80 Aligned_cols=213 Identities=12% Similarity=0.112 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHhhhhcC--cc-----cccC-ChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcC
Q psy14114 9 GSALSRVVQLTEEKLGT--SE-----KTEL-DAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKR 80 (248)
Q Consensus 9 ~~~~~r~~Q~~~Ek~G~--~e-----kTel-~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~ 80 (248)
.--+.++++.+-|-+.+ ++ +.-| .+-+..-+..++.....|..|.......++. +-++..
T Consensus 100 DI~lKKvKHrvVen~ss~tADaLGLSRAILcND~LvkrleeLE~tae~Ykglveh~~~ml~a----------~y~lsq-- 167 (429)
T KOG3651|consen 100 DILLKKVKHRVVENVSSDTADALGLSRAILCNDPLVKRLEELEETAEFYKGLVEHFGDMLQA----------QYKLSQ-- 167 (429)
T ss_pred HHHHHHHHHHHHhhcccCchhhhcchhhhhcCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----------HHHHHH--
Confidence 34566777777777643 23 1122 4455555566666666666666666554432 112211
Q ss_pred CCCCCchhHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhh
Q psy14114 81 PSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLES 160 (248)
Q Consensus 81 ~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~ 160 (248)
....+|+++...+-.-+ ...-+.|+..||..+..|+.-..+...++. .++..|+++|+.-||.-.-..|+.-.
T Consensus 168 -----t~k~FGd~F~~i~vhEp-Qq~AsEAF~~Fgd~HR~ieK~g~~~~k~ik-pmlsDL~tYlnkaiPDTrLTikkYlD 240 (429)
T KOG3651|consen 168 -----TQKEFGDIFCDIAVHEP-QQTASEAFSSFGDKHRMIEKKGSESAKPIK-PMLSDLQTYLNKAIPDTRLTIKKYLD 240 (429)
T ss_pred -----HHHHhhhhhhhhhccCc-chhHHHHHHHHHHHHHHHHHhccchhhhhh-HHHHHHHHHHhccCCcchhhhHHhhh
Confidence 24678888887765443 345678999999999999998888888875 67888999999889888877888777
Q ss_pred hhhhhHHHHHHHHhhcccccc------------cc--------chHHHHHHHHHHHHHHHHHHHHHHHhhhhccch-hHH
Q psy14114 161 KRLDLDSCKNRVRKARSLLGT------------QS--------NAERDLRIAQSEFDRQAEITKLLLEGVQTSHTS-HLR 219 (248)
Q Consensus 161 ~RLd~Daak~k~~kak~~~~~------------~~--------~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e-~~~ 219 (248)
....|=+-=-|++---.++-. .. .+++ .|+.+|-...+++...|+-+-.++.. ...
T Consensus 241 vKfeYLSYCLKvKEMDDEE~~f~AlqEPLYRVeTGNYEYRliLRCRQ---eaRarF~kmR~DVleKmELLdqKHv~Di~~ 317 (429)
T KOG3651|consen 241 VKFEYLSYCLKVKEMDDEEVEFVALQEPLYRVETGNYEYRLILRCRQ---EARARFMKMRDDVLEKMELLDQKHVRDIAQ 317 (429)
T ss_pred hhHHHHHHHHhhhhccchhhceeeecCceeEeecCCeeeehhHHHHH---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 777665544455432111100 00 1222 56788999998888788655555544 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 220 CLHEFVEAQVNYYANCHKIMQDLK 243 (248)
Q Consensus 220 ~L~~lv~aQ~~y~~~~~~~L~~l~ 243 (248)
.|..|++....||+.|+++|.+.-
T Consensus 318 qL~~l~~tmak~~~~c~~~L~~~~ 341 (429)
T KOG3651|consen 318 QLAILAKTMAKCQQECAEILKERI 341 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 899999999999999999998753
No 90
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=96.34 E-value=0.59 Score=40.25 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Q psy14114 106 TYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLE 145 (248)
Q Consensus 106 ~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~ 145 (248)
++..++..+-.....+|..+..+...+...+..||..+..
T Consensus 61 sl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~~ 100 (258)
T cd07655 61 TLETAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQK 100 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666778888888888888888888877753
No 91
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.27 E-value=0.65 Score=39.96 Aligned_cols=26 Identities=4% Similarity=0.215 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHH
Q psy14114 120 KLGAAEREFVNSAHVSFVQPLQKFLE 145 (248)
Q Consensus 120 ~ia~~~~~~~~~~~~~~l~pL~~~l~ 145 (248)
.||..+..+-..+...++.||..++.
T Consensus 78 ~~A~~H~~~~~~L~~~v~~~l~~~~~ 103 (253)
T cd07676 78 DYAGQHEVISENLASQIIVELTRYVQ 103 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888776665
No 92
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.08 E-value=0.79 Score=39.22 Aligned_cols=140 Identities=12% Similarity=0.056 Sum_probs=82.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHh-hhhhhhHHHHHHHH-------hhcc
Q psy14114 106 TYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLE-SKRLDLDSCKNRVR-------KARS 177 (248)
Q Consensus 106 ~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~-~~RLd~Daak~k~~-------kak~ 177 (248)
.+..+|..+|.-...++.............|++||+.|++ -+..+...-...+ -..-+++.+..++. +.+.
T Consensus 88 ~l~~~l~~~s~~~~~~s~~~~~~a~~~~~~vlE~Lk~~~d-~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l~~ 166 (246)
T cd07597 88 DINEGLSSLSKHFQLLSDLSEDEARAEEDGVLEKLKLQLD-LLVSLRDLFERHEKLSLNNIQRLLKRIELNKKKLESLRA 166 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhc
Confidence 4777888888888888888889999999999999999987 4434333322222 23335555555543 2211
Q ss_pred c-ccccc---ch-------HHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114 178 L-LGTQS---NA-------ERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNEL 246 (248)
Q Consensus 178 ~-~~~~~---~~-------e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l 246 (248)
. +.+.. .+ ++++..-..+..-+.+-+...+.-|..+-......|.+|+..|..||..-.+....|.|.|
T Consensus 167 ~~~~~~~e~ekl~~~i~~d~~~i~~q~~R~~fi~~Cv~~E~~~fq~~~~~~~~~l~~~~~~q~~~~~~l~~~W~~L~~~l 246 (246)
T cd07597 167 KPDVKGAEVDKLEASIIKDKESIANQLNRSWFIRECILEETQLFQETQFLLTSILQEFVKDEIQYHSELANVWERLVPKL 246 (246)
T ss_pred CCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 1 11110 01 1111111111111222122223233344335566899999999999999999999988754
No 93
>KOG2273|consensus
Probab=96.01 E-value=1.4 Score=41.59 Aligned_cols=194 Identities=16% Similarity=0.237 Sum_probs=115.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCC-cHHHH
Q psy14114 32 DAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGT-TYGTA 110 (248)
Q Consensus 32 ~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s-~~g~a 110 (248)
+.+|.++..+++.+...+.++++.+.....- .+.... ....+|.++...+..-+ .. .+..+
T Consensus 273 ~~~f~e~~~~i~~l~~~l~~l~~~~~~~~~~---~~~l~~--------------~~~~~g~~~~~l~~~~~-~~~~l~~~ 334 (503)
T KOG2273|consen 273 DKEFTEKKEKIDKLEQQLKKLSKQVQRLVKR---RRELAS--------------NLAELGKALAQLSALEG-ETDELSEA 334 (503)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--------------HHHHHHHHHHHHHHhhh-chHHHHHH
Confidence 7899999999999999999988877652110 000000 12344555444443221 22 78888
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhhHhHHHHHHHHHHHH---HHHH----hhHhhhhhhhHHHHHHHHhhcccc---
Q psy14114 111 LIKVGQYEQKLGAAEREF-VNSAHVSFVQPLQKFLEGEMKTI---VKER----SLLESKRLDLDSCKNRVRKARSLL--- 179 (248)
Q Consensus 111 L~~~g~a~~~ia~~~~~~-~~~~~~~~l~pL~~~l~~~~~~i---~~~r----kkl~~~RLd~Daak~k~~kak~~~--- 179 (248)
+..+..+...+..+...+ ...-...+..+++.|+. .+..+ -++| .++...+.++...+..+.+.+...
T Consensus 335 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~i~-~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 413 (503)
T KOG2273|consen 335 LSGLAKVIESLSKLLEKLTAEKDSKKLAEQLREYIR-YLESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRSS 413 (503)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh
Confidence 888888888888888888 66666777777777765 32222 2222 333444455554444443221111
Q ss_pred --ccc-cchHHHHHHH-------H-----HHHH--HHHHHHHHHHHhhhhc-cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 180 --GTQ-SNAERDLRIA-------Q-----SEFD--RQAEITKLLLEGVQTS-HTSHLRCLHEFVEAQVNYYANCHKIMQD 241 (248)
Q Consensus 180 --~~~-~~~e~el~~a-------~-----~~fe--~~~e~~~~~m~~i~~~-e~e~~~~L~~lv~aQ~~y~~~~~~~L~~ 241 (248)
... ...+.+++.- . ..|+ ...+.....+..+... ..+.-..+..|++.+.+|++.+.+.+..
T Consensus 414 ~~~~k~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~f~~~~~~d~~~~~~~~~d~~i~~~~~~l~~W~~ 493 (503)
T KOG2273|consen 414 FGFDKIDLAEKEIEKLEEKVNELEELLALKELELDEISERIRAELERFEESRRQDFKESLKKYADLHVEYAEQILKAWEK 493 (503)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0022222222 2 2222 4555566666665553 4556668999999999999999999988
Q ss_pred HHH
Q psy14114 242 LKN 244 (248)
Q Consensus 242 l~~ 244 (248)
+.+
T Consensus 494 ~~~ 496 (503)
T KOG2273|consen 494 FLP 496 (503)
T ss_pred hcc
Confidence 876
No 94
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=95.94 E-value=0.91 Score=38.68 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHHHHH
Q psy14114 32 DAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTAL 111 (248)
Q Consensus 32 ~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~aL 111 (248)
+..|..|.++++.-...|..|..-... |.. +.+. |......|+.-+...+.. ++ .++..++
T Consensus 4 ~~g~~~l~~~~~~G~~~ckel~~f~kE--------Ra~--IE~~-------YAK~L~kLa~k~~k~~~~-~~-Gtl~~aw 64 (239)
T cd07658 4 QKGFEELRRYVKQGGDFCKELATVLQE--------RAE--LELN-------YAKGLSKLSGKLSKASKS-VS-GTLSSAW 64 (239)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH--------HHH--HHHH-------HHHHHHHHHHHHHHhhcc-CC-CcHHHHH
Confidence 456777777777777776666654431 211 1110 000123333332222221 12 5777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHH
Q psy14114 112 IKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEG 146 (248)
Q Consensus 112 ~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~ 146 (248)
..+......+|..+..+...+...+..||..|...
T Consensus 65 ~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~~ 99 (239)
T cd07658 65 TCVAEEMESEADIHRNLGSALTEEAIKPLRQVLDE 99 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999873
No 95
>KOG3891|consensus
Probab=95.84 E-value=1.2 Score=39.52 Aligned_cols=222 Identities=14% Similarity=0.126 Sum_probs=152.5
Q ss_pred hHhhHHHHHHHHHHHHhhhhcCcc-cccC--ChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcC
Q psy14114 4 FVKDAGSALSRVVQLTEEKLGTSE-KTEL--DAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKR 80 (248)
Q Consensus 4 ~~~~~~~~~~r~~Q~~~Ek~G~~e-kTel--~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~ 80 (248)
.|+....++=.++|.+.-++|.-| ..-+ |.|+..--.-+..+...|-.|++.+..|-. |....
T Consensus 18 vvn~mQ~kyW~tkqv~~k~~GkKEDeHlvaSDaeLDaklelf~Si~~T~l~L~kiId~Yq~-----rl~~l--------- 83 (436)
T KOG3891|consen 18 VVNKMQQKYWETKQVFIKATGKKEDEHLVASDAELDAKLELFHSIQRTCLDLLKIIDLYQK-----RLCDL--------- 83 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH---------
Confidence 467788889999999999999886 3222 555555445555566677788888877732 22110
Q ss_pred CCCCCchhHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhh
Q psy14114 81 PSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLES 160 (248)
Q Consensus 81 ~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~ 160 (248)
......||..+-+.|.-- -+.-|+.+...|.+..--+.-+..+-.++ .+|-.-+..|-...|..-......++.
T Consensus 84 ---SqeenvlGkfLkeqgkrd--kT~agkmm~atgkal~fssqqrla~r~pl-~r~~~ev~vF~~RAI~Dt~qTi~~meq 157 (436)
T KOG3891|consen 84 ---SQEENVLGKFLKEQGKRD--KTEAGKMMIATGKALCFSSQQRLALRIPL-SRFYQEVSVFRERAISDTSQTINRMEQ 157 (436)
T ss_pred ---HHHHHHHHHHHHHhccch--hhhhhhHHHHHhHHhhhhHHHHHHHhhhH-HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 012467787777776622 34566677777777666666666666665 467777888888888888888999999
Q ss_pred hhhhhHHHHHHHHhhccc-ccccc-------chHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHH
Q psy14114 161 KRLDLDSCKNRVRKARSL-LGTQS-------NAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNY 231 (248)
Q Consensus 161 ~RLd~Daak~k~~kak~~-~~~~~-------~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y 231 (248)
-|-.|-.|..=++.+..+ ++... .+...++.|+..|+.-.-++.....-+-..+...+. .|..|..--+.|
T Consensus 158 ~RTEYRgaLlWMK~~SqELDPdt~k~meKFRkaQt~Vr~aK~nfDklkmD~~QKVDLL~AsRcNllSh~Lt~YqteL~~f 237 (436)
T KOG3891|consen 158 CRTEYRGALLWMKDVSQELDPDTDKQMEKFRKAQTQVRSAKENFDKLKMDVCQKVDLLGASRCNLLSHVLTTYQTELLEF 237 (436)
T ss_pred HHHHHHHHHHHHHhhHhhcCcchhhHHHHHHHHHHHHHHHHhccchhhhHHHHHHhHhhHhhhhHHHHHHHHHHHHHHHH
Confidence 999999999888776432 22110 044567888888887765555444333345666666 789999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy14114 232 YANCHKIMQDLKNE 245 (248)
Q Consensus 232 ~~~~~~~L~~l~~~ 245 (248)
++.....++.+...
T Consensus 238 ~~Kta~tf~ti~ea 251 (436)
T KOG3891|consen 238 WSKTARTFETIHEA 251 (436)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988877654
No 96
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=95.75 E-value=1.1 Score=38.11 Aligned_cols=66 Identities=23% Similarity=0.278 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHH---------------------HHHHHHhhHhhhhhh
Q psy14114 106 TYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMK---------------------TIVKERSLLESKRLD 164 (248)
Q Consensus 106 ~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~---------------------~i~~~rkkl~~~RLd 164 (248)
.+..++..+-..-..||+.+..+...+...+..||..|.....+ .+.++|+.+..+..+
T Consensus 57 tl~~sw~~~~~e~E~~a~~H~~la~~L~~ev~~~l~~f~~~~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke 136 (233)
T cd07649 57 TLGEAWAQVKKSLADEAEVHLKFSSKLQSEVEKPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKD 136 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777888899999999999999999999998874333 234555555555566
Q ss_pred hHHHHHH
Q psy14114 165 LDSCKNR 171 (248)
Q Consensus 165 ~Daak~k 171 (248)
.|.+-..
T Consensus 137 ~e~~~~~ 143 (233)
T cd07649 137 LEGKTQQ 143 (233)
T ss_pred HHHHHHH
Confidence 6665333
No 97
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=95.27 E-value=1.6 Score=36.96 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Q psy14114 106 TYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLE 145 (248)
Q Consensus 106 ~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~ 145 (248)
++..++..+-.....+|..+..+...+...+..||..|..
T Consensus 57 sl~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~ 96 (236)
T cd07651 57 GLKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFAS 96 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777778888999999999999999999988866
No 98
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=94.00 E-value=3.1 Score=34.57 Aligned_cols=96 Identities=13% Similarity=0.170 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhh----cc
Q psy14114 139 PLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQT----SH 214 (248)
Q Consensus 139 pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~----~e 214 (248)
+|..|.. -+.++...|..|-.--- |.....+.+=.+++ +. ++..++..|+...+.....+...+. +.
T Consensus 64 ~l~kF~~-~l~ei~~~~~~L~~q~~--~~l~~pL~~F~k~D-----l~-~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k 134 (202)
T cd07606 64 VMTKFTS-ALREIGSYKEVLRSQVE--HMLNDRLAQFADTD-----LQ-EVKDARRRFDKASLDYEQARSKFLSLTKDAK 134 (202)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-----HH-HHHHHHHHHHHHHHHHHHHHHHHHhccccCc
Confidence 4677766 67777777766533221 23333333322221 22 4556677788777777766665554 34
Q ss_pred chhHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 215 TSHLRC-LHEFVEAQVNYYANCHKIMQDLK 243 (248)
Q Consensus 215 ~e~~~~-L~~lv~aQ~~y~~~~~~~L~~l~ 243 (248)
++.+.. -..+-.+...|+..+.+..-.|.
T Consensus 135 ~~~~~ea~~~l~~~R~~F~~~~ldyv~~ln 164 (202)
T cd07606 135 PEILAAAEEDLGTTRSAFETARFDLMNRLH 164 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555653 34555566666666666655443
No 99
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=93.82 E-value=3.7 Score=34.86 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH---------------------HHHHHHHHHHhhHhhhhhh
Q psy14114 106 TYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLE---------------------GEMKTIVKERSLLESKRLD 164 (248)
Q Consensus 106 ~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~---------------------~~~~~i~~~rkkl~~~RLd 164 (248)
++..++..+-.....||..+..+...+...+ .+|..|.. .-++.+.++|++.+.+--+
T Consensus 57 sl~~aw~~i~~e~e~~a~~H~~la~~L~~~v-~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e 135 (239)
T cd07647 57 TLKSSWDSLRKETENVANAHIQLAQSLREEA-EKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCRE 135 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555666666666655542 44444432 2334555556666666666
Q ss_pred hHHHHHHHHhhc
Q psy14114 165 LDSCKNRVRKAR 176 (248)
Q Consensus 165 ~Daak~k~~kak 176 (248)
.+.|...+.++.
T Consensus 136 ~e~a~~~~~~~~ 147 (239)
T cd07647 136 KDKAEQAYEKSS 147 (239)
T ss_pred HHHHHHHHHhcc
Confidence 666665554443
No 100
>KOG1660|consensus
Probab=93.77 E-value=4.8 Score=35.98 Aligned_cols=97 Identities=18% Similarity=0.133 Sum_probs=67.2
Q ss_pred HHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHH
Q psy14114 147 EMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFV 225 (248)
Q Consensus 147 ~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv 225 (248)
+..-+...+=+.++--.||.+|-..+.|++........++..-..|=.+|++..+.+...+.++.....--+. +|.++-
T Consensus 296 ~~~aakdllyRr~Rcl~~ye~ank~l~kar~knkdv~~ae~~q~e~c~kfe~~s~~~k~eli~fk~rrvaaf~knl~el~ 375 (399)
T KOG1660|consen 296 DSCAAKDLLYRRERCLADYEAANKNLEKARAKNKDVHAAEAAQQEACQKFESISESAKEELIGFKTRRVAAFKKNLVELS 375 (399)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHH
Confidence 5555566666778888999999988887653221111266666677789999999999999998886655555 777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14114 226 EAQVNYYANCHKIMQDLK 243 (248)
Q Consensus 226 ~aQ~~y~~~~~~~L~~l~ 243 (248)
+.....-+.-+.+|.+..
T Consensus 376 eleikhak~~~~ll~~~~ 393 (399)
T KOG1660|consen 376 ELEIKHAKTNYSLLRQCL 393 (399)
T ss_pred HHHHHhhhhhHHHHHHHH
Confidence 666655555555555443
No 101
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=93.55 E-value=4.4 Score=34.81 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Q psy14114 106 TYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLE 145 (248)
Q Consensus 106 ~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~ 145 (248)
++..++..+-.....++..+..+...+. .++.||..|++
T Consensus 57 t~~~~w~~i~~~~e~~a~~H~~l~~~L~-~~~~~l~~~~~ 95 (261)
T cd07648 57 TFAPLWLVLRVSTEKLSELHLQLVQKLQ-ELIKDVQKYGE 95 (261)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4445555555666677777777777774 56777777665
No 102
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=93.13 E-value=5.1 Score=34.42 Aligned_cols=88 Identities=13% Similarity=0.201 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHH
Q psy14114 146 GEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFV 225 (248)
Q Consensus 146 ~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv 225 (248)
..++++.+++++.++..-+-..|+.+..++..+-. . .+.+++.++..+...... |. ...-++...|..+=
T Consensus 124 ~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~-~--tk~~~eK~k~~~~~~~q~----~e---~aKn~Y~~~L~~~N 193 (252)
T cd07675 124 MCWKQMDNSKKKFERECREAEKAQQSYERLDNDTN-A--TKSDVEKAKQQLNLRTHM----AD---ESKNEYAAQLQNFN 193 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc-c--CHHHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHH
Confidence 34445555555555555555555555555433211 1 233444444444332211 11 12244555555555
Q ss_pred HHHHH-HHHHHHHHHHHHH
Q psy14114 226 EAQVN-YYANCHKIMQDLK 243 (248)
Q Consensus 226 ~aQ~~-y~~~~~~~L~~l~ 243 (248)
.-|-. ||+.-=++|..+|
T Consensus 194 ~~q~k~Y~e~mP~vfd~lQ 212 (252)
T cd07675 194 GEQHKHFYIVIPQIYKQLQ 212 (252)
T ss_pred HhhHhHHHHHHHHHHHHHH
Confidence 55555 5555555555544
No 103
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=92.68 E-value=6.2 Score=34.21 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Q psy14114 106 TYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLE 145 (248)
Q Consensus 106 ~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~ 145 (248)
++..++..+-.....||..+..+...+. ..+.+|..|.+
T Consensus 64 t~~~~~~~~~~e~e~~a~~H~~la~~L~-~~~~~l~~~~~ 102 (269)
T cd07673 64 TFAPVWDVFKTSTEKLANCHLELVRKLQ-ELIKEVQKYGE 102 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3555577776677778888888888887 46778887775
No 104
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=92.57 E-value=6.2 Score=33.97 Aligned_cols=57 Identities=12% Similarity=0.236 Sum_probs=33.9
Q ss_pred hHHHHHHHHhcccCCCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Q psy14114 88 EYLGLDMTEAGNAFGPGT---TYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLE 145 (248)
Q Consensus 88 ~~Lg~~m~~~~~~~~~~s---~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~ 145 (248)
+..+..|...+......+ ++..++..+-.....||+.+.++...+. ..+.|+..|..
T Consensus 36 e~Yak~L~klak~~~~~~e~Gtl~~~w~~~~~~~E~~a~~H~~l~~~L~-~~~~~i~~~~~ 95 (261)
T cd07674 36 ETYSKSMSKLSKMASNGSPLGTFAPMWEVFRVSSDKLALCHLELMRKLN-DLIKDINRYGD 95 (261)
T ss_pred HHHHHHHHHHHhcccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 344444444444333333 4555666666677777888888888776 44566766655
No 105
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=92.24 E-value=5.2 Score=32.25 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=38.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q psy14114 105 TTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKT 150 (248)
Q Consensus 105 s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~ 150 (248)
.+++.+...+......+|..+..+...+...+..|+..+.. ..+.
T Consensus 53 ~t~~~~w~~~~~e~~~~a~~h~~~a~~l~~~i~~~~~~~~~-~~~~ 97 (191)
T cd07610 53 TSLGTSWNSLREETESAATVHEELSEKLSQLIREPLEKVKE-DKEQ 97 (191)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 57788888888888999999999999999999999988877 4443
No 106
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=91.22 E-value=9.1 Score=33.03 Aligned_cols=37 Identities=11% Similarity=-0.014 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHH
Q psy14114 106 TYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQK 142 (248)
Q Consensus 106 ~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~ 142 (248)
++..++..+-.....||+++..+...+...+.+|+..
T Consensus 61 TL~~sw~~~~~e~E~ia~~H~~l~~~L~~E~~e~ir~ 97 (258)
T cd07681 61 TLEKAWHAFLTAAERLSEIHLELRENLVGEDSEKVRA 97 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666676777778888888888888888888866
No 107
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=91.09 E-value=7.9 Score=32.09 Aligned_cols=27 Identities=19% Similarity=0.184 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy14114 35 FESLAGRSDVTKLWTEKIVGDTAAVLT 61 (248)
Q Consensus 35 ~~~lE~~~d~~k~~~~~l~k~~~~yl~ 61 (248)
..++|..++.++..+++|+|.++.++.
T Consensus 4 i~~~E~~~~~le~~l~kl~K~~k~~~~ 30 (200)
T cd07639 4 IEEVEAEVSELETRLEKLVKLGSGMLE 30 (200)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999998877655
No 108
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=91.06 E-value=9.2 Score=32.79 Aligned_cols=146 Identities=12% Similarity=0.079 Sum_probs=96.5
Q ss_pred hhHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhh
Q psy14114 87 LEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKL-GAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDL 165 (248)
Q Consensus 87 ~~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~i-a~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~ 165 (248)
...||.+|..+| .+..++|++.... ..+...|..+++...-.-|..... .-+.+.+.|=.++..|--|
T Consensus 76 ~s~lg~aL~~~g----------ea~~kla~a~~~~d~~i~~~fl~PL~~~le~dlk~I~k-~RK~Le~~RLD~D~~K~r~ 144 (248)
T cd07619 76 DSLLGKMLKLCG----------ETEDKLAQELILFELQIERDVVEPLYVLAEVEIPNIQK-QRKHLAKLVLDMDSSRTRW 144 (248)
T ss_pred CchHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHhhHhhHHHHHHHH
Confidence 467888886654 4666777666554 668889999998777777776666 8888888888888888888
Q ss_pred HHHHHHH------H--hhccccc--cccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHH----HHHHHHHHHH
Q psy14114 166 DSCKNRV------R--KARSLLG--TQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCL----HEFVEAQVNY 231 (248)
Q Consensus 166 Daak~k~------~--kak~~~~--~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L----~~lv~aQ~~y 231 (248)
..+..+. . +++.++. +.+.++.+++.+++.+.. .+...|.+.++. ++++..| .+|.+-=+.-
T Consensus 145 ~~a~~~~~~~~~~~~~~~k~e~lr~e~E~ae~~~e~~kd~~~~---~m~~~l~~e~e~-~~~l~~Lv~AQleYHr~A~ei 220 (248)
T cd07619 145 QQSSKSSGLSSNLQPTGAKADALREEMEEAANRMEICRDQLSA---DMYSFVAKEIDY-ANYFQTLIEVQAEYHRKSLEL 220 (248)
T ss_pred HhccccccccccccCCCCccHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 7653211 0 1111111 111277888888766554 455666666665 5555544 6677777777
Q ss_pred HHHHHHHHHHHHHhhc
Q psy14114 232 YANCHKIMQDLKNELS 247 (248)
Q Consensus 232 ~~~~~~~L~~l~~~l~ 247 (248)
-+.....+.+++..|.
T Consensus 221 Le~l~~~i~~~~~~~~ 236 (248)
T cd07619 221 LQSVLPQIKAHQEAWV 236 (248)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 7777777777776653
No 109
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=88.23 E-value=10 Score=29.41 Aligned_cols=71 Identities=13% Similarity=0.223 Sum_probs=61.8
Q ss_pred CCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHh
Q psy14114 103 PGTTYG--TALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRK 174 (248)
Q Consensus 103 ~~s~~g--~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~k 174 (248)
++|+.| .-+..|-..+..++.+.......-...|+..|.+|-. =...+...+.++...|-.+-.|+..+.-
T Consensus 32 d~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~-i~~~i~~sq~~i~~lK~~L~~ak~~L~~ 104 (142)
T PF04048_consen 32 DDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQ-ILSSISESQERIRELKESLQEAKSLLGC 104 (142)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456655 4588899999999999999999999999999999988 7788999999999999999999999954
No 110
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=88.02 E-value=11 Score=29.52 Aligned_cols=120 Identities=14% Similarity=0.205 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHHHHHHHH
Q psy14114 35 FESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKV 114 (248)
Q Consensus 35 ~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~aL~~~ 114 (248)
|..+++.++.+-+.+..+...+..+.... ......+. ++....+... ...+|.++ ..+|.++..+
T Consensus 2 ~~~~~~~~~kl~k~~~~~~~~~~~~~~~~--~~~~~~l~-~l~~~~~~~~--~~~l~~~l----------~~~~~~~~~l 66 (194)
T cd07307 2 LDELEKLLKKLIKDTKKLLDSLKELPAAA--EKLSEALQ-ELGKELPDLS--NTDLGEAL----------EKFGKIQKEL 66 (194)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-HHhccCCCcc--cchHHHHH----------HHHHHHHHHH
Confidence 45667777777777777777666655431 11111111 1111111111 11244443 3456677777
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHH
Q psy14114 115 GQYEQKLGA-AEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKN 170 (248)
Q Consensus 115 g~a~~~ia~-~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~ 170 (248)
+........ +...+..++..-....+..+-. -++...+.|..++..+..+...+.
T Consensus 67 ~~~~~~~~~~~~~~v~~pL~~~~~~~~~~~~~-~~k~~~~~~~~yd~~~~k~~~~~~ 122 (194)
T cd07307 67 EEFRDQLEQKLENKVIEPLKEYLKKDLKEIKK-RRKKLDKARLDYDAAREKLKKLRK 122 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666544 5555666665433355555544 777888888888888888776654
No 111
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=87.71 E-value=16 Score=31.06 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHH
Q psy14114 106 TYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKF 143 (248)
Q Consensus 106 ~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~ 143 (248)
++..++..+-.--..||..+..+...+...+ .|+..|
T Consensus 58 Tl~~sw~~~~~E~e~~a~~H~~la~~L~~~~-~~~~~f 94 (240)
T cd07672 58 TLKRSLDVFKQQIDNVGQSHIQLAQTLRDEA-KKMEDF 94 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4555566665556667777777777777643 377766
No 112
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=87.57 E-value=14 Score=30.08 Aligned_cols=150 Identities=19% Similarity=0.256 Sum_probs=81.6
Q ss_pred CcchHhhHHHHHHHHHHHHh--hhhc-CcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCc-----chhHHH
Q psy14114 1 MKQFVKDAGSALSRVVQLTE--EKLG-TSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGN-----RVEDFL 72 (248)
Q Consensus 1 ~~~~~~~~~~~~~r~~Q~~~--Ek~G-~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~-----r~~~~~ 72 (248)
|||-.+|+...+ +|.++ +++- ..+=.++...|..++..+..+...+...+.....+....... .....+
T Consensus 1 ~~K~~~R~~q~~---~~k~g~~~~t~~D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 77 (229)
T PF03114_consen 1 FKKKINRAKQRV---KQKLGKSEKTEIDEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADAL 77 (229)
T ss_dssp -HHHHHHHHHHH---HHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHH
T ss_pred CChHHHHHHHHH---HHHcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHH
Confidence 455555555544 44444 4443 334445788899999999999998888888887766542210 111112
Q ss_pred HHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q psy14114 73 FEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKL-GAAEREFVNSAHVSFVQPLQKFLEGEMKTI 151 (248)
Q Consensus 73 ~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~i-a~~~~~~~~~~~~~~l~pL~~~l~~~~~~i 151 (248)
.+ +.... .+...+|.++.. +|.+...++.+...+ ..+...+..++.. |+..+...-. .++..
T Consensus 78 ~~-~~~~~----~~~~~~~~~l~~----------~~~~~~~i~~~~~~~~~~~~~~vi~pl~~-~~~~~~~i~~-~~kkr 140 (229)
T PF03114_consen 78 IE-LGSEF----SDDSSLGNALEK----------FGEAMQEIEEARKELESQIESTVIDPLKE-FLKEFKEIKK-LIKKR 140 (229)
T ss_dssp HH-HHHCT----STTCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHTHHHHHH-HHHHHHHHHH-HHHHH
T ss_pred HH-Hhccc----cccchhhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHH-HHHHH
Confidence 11 11101 112236655544 444555555555444 3445666666653 3355554444 56666
Q ss_pred HHHHhhHhhhhhhhHHHHH
Q psy14114 152 VKERSLLESKRLDLDSCKN 170 (248)
Q Consensus 152 ~~~rkkl~~~RLd~Daak~ 170 (248)
.+.+-.+++.+-.+..++.
T Consensus 141 ~~~~ldyd~~~~k~~k~~~ 159 (229)
T PF03114_consen 141 EKKRLDYDSARSKLEKLRK 159 (229)
T ss_dssp HHHHHHHHHHHHHHHHCHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6666666666666665553
No 113
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=87.37 E-value=19 Score=31.32 Aligned_cols=97 Identities=12% Similarity=0.156 Sum_probs=55.1
Q ss_pred hHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH--HHHHHHHHHHhhHhhhhhhh
Q psy14114 88 EYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLE--GEMKTIVKERSLLESKRLDL 165 (248)
Q Consensus 88 ~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~--~~~~~i~~~rkkl~~~RLd~ 165 (248)
...+..|..-|..- ++.++.+..++|.....||++...|...+. .+-..|+.+-+ ..+......|+++...-
T Consensus 81 ~~~A~~L~~WG~~e--dddl~DIsDklgvLl~e~ge~e~~~a~~~d-~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I--- 154 (271)
T PF13805_consen 81 KAAAKQLSEWGEQE--DDDLSDISDKLGVLLYEIGELEDQYADRLD-QYRIHLKSIRNREESLQPSRDRRRKLQDEI--- 154 (271)
T ss_dssp HHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHhHHHHHHH---
Confidence 45566677777653 567999999999999999999999988764 33444443332 23333333333332211
Q ss_pred HHHHHHHHhhccccccccchHHHHHHHHH
Q psy14114 166 DSCKNRVRKARSLLGTQSNAERDLRIAQS 194 (248)
Q Consensus 166 Daak~k~~kak~~~~~~~~~e~el~~a~~ 194 (248)
.+++...|...+...+++||..|+.
T Consensus 155 ----~kLk~k~P~s~kl~~LeqELvraEa 179 (271)
T PF13805_consen 155 ----AKLKYKDPQSPKLVVLEQELVRAEA 179 (271)
T ss_dssp ----HHHHHH-TTTTTHHHHHHHHHHHHH
T ss_pred ----HHHHhcCCCChHHHHHHHHHHHHHH
Confidence 2333323333332336677766654
No 114
>smart00721 BAR BAR domain.
Probab=86.83 E-value=17 Score=30.23 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=87.9
Q ss_pred CcchHhhHHHHHHHHHHHHh--hhhc-CcccccCChHHHHHHHHHHHHHHHHHHHH---HHhhhhcCCCCCcchhHHHHH
Q psy14114 1 MKQFVKDAGSALSRVVQLTE--EKLG-TSEKTELDAHFESLAGRSDVTKLWTEKIV---GDTAAVLTPNPGNRVEDFLFE 74 (248)
Q Consensus 1 ~~~~~~~~~~~~~r~~Q~~~--Ek~G-~~ekTel~~e~~~lE~~~d~~k~~~~~l~---k~~~~yl~~np~~r~~~~~~~ 74 (248)
|||-.+|++. ++.|.++ |++- ..+=-++-..|..++..+..+.+.+...+ ..+....... ..+...+.+
T Consensus 2 ~~K~~~R~~q---~~~ek~G~~e~T~~D~~f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~--~~~~~~l~~ 76 (239)
T smart00721 2 FKKQFNRAKQ---KVGEKVGKAEKTKLDEDFEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQ--KKLSKSLGE 76 (239)
T ss_pred ccchhHHHHH---HHHHHhCCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHH--HHHHHHHHH
Confidence 4555555544 4566666 4442 11223468899999999999999999888 6666554321 111112111
Q ss_pred Hhhhc-CCCCCCchhHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Q psy14114 75 KIEKK-RPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVK 153 (248)
Q Consensus 75 k~~~~-~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~ 153 (248)
-.... ......+...+|.+|. .+|.++..++.+...+......+..+....+..-+..+.. .++....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~kk~~~ 145 (239)
T smart00721 77 VYEGGDDGEGLGADSSYGKALD----------KLGEALKKLLQVEESLSQVKRTFILPLLNFLLGEFKEIKK-ARKKLER 145 (239)
T ss_pred HhcCCCCccccCchhHHHHHHH----------HHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHhHHHHH-HHHHHHh
Confidence 11100 0011112234555553 3556777777766666666677777777666666655555 6666666
Q ss_pred HHhhHhhhhhhhHHHHHH
Q psy14114 154 ERSLLESKRLDLDSCKNR 171 (248)
Q Consensus 154 ~rkkl~~~RLd~Daak~k 171 (248)
.|=.++..|-.+..++.+
T Consensus 146 ~~lDyD~~~~kl~~~~~~ 163 (239)
T smart00721 146 KLLDYDSARHKLKKAKKS 163 (239)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 666667777666666544
No 115
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=86.54 E-value=19 Score=30.57 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=31.7
Q ss_pred HHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHHHHHHHHHHHH
Q psy14114 149 KTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQ 199 (248)
Q Consensus 149 ~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el~~a~~~fe~~ 199 (248)
.++.++++.....--++.+||.|..++.. +.+.+.++++|...
T Consensus 131 ~eveK~Kk~Y~~~c~~~e~AR~K~ekas~--------~K~~~K~~EKy~~m 173 (237)
T cd07685 131 QDIEKLKSQYRSLAKDSAQAKRKYQEASK--------DKDRDKAKEKYVKS 173 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc--------chhHHHHHHHHHHH
Confidence 46788888888888888889988887643 23566666666655
No 116
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=86.19 E-value=21 Score=30.79 Aligned_cols=23 Identities=9% Similarity=0.130 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy14114 34 HFESLAGRSDVTKLWTEKIVGDT 56 (248)
Q Consensus 34 e~~~lE~~~d~~k~~~~~l~k~~ 56 (248)
.|..+-++++.=..+|..|..-.
T Consensus 6 ~y~~~~kr~~~g~~~~~dl~~f~ 28 (258)
T cd07680 6 NYKRTVKRIDDGHRLCNDLMNCV 28 (258)
T ss_pred chHHHHHHHHhhHHHHHHHHHHH
Confidence 47777777777776666665533
No 117
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=86.10 E-value=19 Score=30.28 Aligned_cols=135 Identities=19% Similarity=0.270 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH--hhHhhhhhhhHHHHHHHHhhccc--cc--cc
Q psy14114 109 TALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKER--SLLESKRLDLDSCKNRVRKARSL--LG--TQ 182 (248)
Q Consensus 109 ~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~r--kkl~~~RLd~Daak~k~~kak~~--~~--~~ 182 (248)
.++..+-..-..+|..+..+...+...+..|+..|-... +...... +.+...--+++.+..++.|..+. +. ..
T Consensus 62 ~~w~~i~~e~e~~a~~H~~la~~l~~~ve~~l~~~~~~~-~~~~~l~~~q~l~~~~k~~~e~~k~~~Kl~kk~~k~~~~~ 140 (228)
T cd07650 62 NPWLTIESETEFIAASHGELAQRIETDVEEPLRDFATST-EFMNTLDDDQNLSNLAKELDESQKKWDKLKKKHSKASSKA 140 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 444555555667788889999999999999998886521 1111000 01222222333333332221110 00 00
Q ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 183 -SNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDLKN 244 (248)
Q Consensus 183 -~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~-~L~~lv~aQ~~y~~~~~~~L~~l~~ 244 (248)
......++.+..+++...-.+...+..+-..+..+++ .|..|-..--.++...-+.-+++..
T Consensus 141 ~~~~~~~l~~~~~~We~~~~~~~e~fQ~leeeRl~~lk~~l~~y~~~~sd~~~~~~~~~E~~~~ 204 (228)
T cd07650 141 VSAAVSDLEEARQQWDSQAPFLFELLQAIDEERLNHLKDVLLQFQTHESDYALRTTESAEECMN 204 (228)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhhHHHHHHHH
Confidence 0023467777777777776666566666656777777 6777777777777665554444443
No 118
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=85.82 E-value=19 Score=29.86 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy14114 34 HFESLAGRSDVTKLWTEKIVGDTAAVLT 61 (248)
Q Consensus 34 e~~~lE~~~d~~k~~~~~l~k~~~~yl~ 61 (248)
...++|..++.++.-++++++.++.|+.
T Consensus 3 ~i~~~E~d~~~Le~~l~Kl~K~~~~~~d 30 (200)
T cd07638 3 ALEDVEGDVAELELKLDKLVKLCIGMID 30 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999987754
No 119
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=83.59 E-value=27 Score=29.89 Aligned_cols=143 Identities=8% Similarity=0.038 Sum_probs=96.6
Q ss_pred hhHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhh
Q psy14114 87 LEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKL-GAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDL 165 (248)
Q Consensus 87 ~~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~i-a~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~ 165 (248)
...+|.+|.. ||.++.++|++.... ..+...|..+++...-.-|..... .-+.+...|=.++..|-.|
T Consensus 76 ~s~~g~aL~~----------~gea~~kla~~~~~~d~~ie~~fl~PL~~~le~dlk~I~K-~RkkLe~~RLD~D~~K~r~ 144 (246)
T cd07618 76 ESLIGKMLDT----------CGDAENKLAFELSQHEVLLEKDILDPLNQLAEVEIPNIQK-QRKQLAKLVLDWDSARGRY 144 (246)
T ss_pred CccHHHHHHH----------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHhHHhhHHHHHHHH
Confidence 4567777755 455777777665554 336668999998777777776666 8889999999999999999
Q ss_pred HHHH-----------HHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHh---hhhccchhHHHHHHHHHHHHHH
Q psy14114 166 DSCK-----------NRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEG---VQTSHTSHLRCLHEFVEAQVNY 231 (248)
Q Consensus 166 Daak-----------~k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~---i~~~e~e~~~~L~~lv~aQ~~y 231 (248)
+.+. +|+.-. .++.+. ++..++.+++.|+... ...|.+ .+..=.+.+..-.+|.+-=+.-
T Consensus 145 ~~a~~~~~~~~~~~~~K~~~l-~ee~e~--a~~k~E~~kD~~~~dm---~~~l~~e~e~~~~l~~lv~aQ~eYHr~a~e~ 218 (246)
T cd07618 145 NQAHKSSGTNFQAMPSKIDML-KEEMDE--AGNKVEQCKDQLAADM---YNFASKEGEYAKFFVLLLEAQADYHRKALAV 218 (246)
T ss_pred HhccccCccccccccchhhhh-HHHHHH--HHHHHHHHHHHHHHHH---HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8775 332211 122222 8899999999999843 333333 2222244555567777777777
Q ss_pred HHHHHHHHHHHHHhh
Q psy14114 232 YANCHKIMQDLKNEL 246 (248)
Q Consensus 232 ~~~~~~~L~~l~~~l 246 (248)
.+...-.+..++..|
T Consensus 219 Le~~~p~i~~~~~~~ 233 (246)
T cd07618 219 IEKVLPEIQAHQDKW 233 (246)
T ss_pred HHHHHHHHHHHHHhc
Confidence 777777777777654
No 120
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=81.17 E-value=30 Score=28.63 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy14114 34 HFESLAGRSDVTKLWTEKIVGDTAAVLT 61 (248)
Q Consensus 34 e~~~lE~~~d~~k~~~~~l~k~~~~yl~ 61 (248)
...+.|..+|.++..+++|+|.++.++.
T Consensus 3 ~l~~~E~~~~~l~~~l~kl~K~~~~~~~ 30 (200)
T cd07603 3 SLEQVEADVSELETRLEKLLKLCNGMVD 30 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999998877654
No 121
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=79.50 E-value=35 Score=28.44 Aligned_cols=137 Identities=14% Similarity=0.112 Sum_probs=76.4
Q ss_pred hHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhh
Q psy14114 88 EYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLG-----AAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKR 162 (248)
Q Consensus 88 ~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia-----~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~R 162 (248)
-..+..|+++|. .|+.|-..|+.+....+ +. .-|+++ .+..+|..|.. -+.++...|..|-.-.
T Consensus 22 iK~ck~~i~a~k------~~~~a~~~F~~~L~~f~~~~~g~~--~tDDe~--~i~~~L~kF~~-~l~ei~~~r~~L~~q~ 90 (207)
T cd07602 22 IKECKNLISATK------NLSKAQRSFAQTLQNFKFECIGET--QTDDEI--EIAESLKEFGR-LIETVEDERDRMLENA 90 (207)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhccCCc--CcccHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 455677777665 44445555544444433 21 112222 24578888877 7778877776553322
Q ss_pred hhhHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhh---cc-chhHHHH-HHHHHHHHHHHHHHHH
Q psy14114 163 LDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQT---SH-TSHLRCL-HEFVEAQVNYYANCHK 237 (248)
Q Consensus 163 Ld~Daak~k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~---~e-~e~~~~L-~~lv~aQ~~y~~~~~~ 237 (248)
-|+....+.+=.+++ + .++..++.+|+...+.....+...+. +. +..+... ..+-.+...||+.+.+
T Consensus 91 --~~~l~~pL~~F~k~d-----l-~~~ke~kk~FdK~se~~~~al~k~~~lsk~kk~~~~~ea~~~l~~~r~~f~~~~l~ 162 (207)
T cd07602 91 --EEQLIEPLEKFRKEQ-----I-GGAKEEKKKFDKETEKFCSSLEKHLNLSTKKKENQLQEADAQLDMERRNFHQASLE 162 (207)
T ss_pred --HHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222332221111 2 36777788899988888888777543 22 4444433 5555666677777777
Q ss_pred HHHHHH
Q psy14114 238 IMQDLK 243 (248)
Q Consensus 238 ~L~~l~ 243 (248)
....|+
T Consensus 163 Yv~~l~ 168 (207)
T cd07602 163 YVFKLQ 168 (207)
T ss_pred HHHHHH
Confidence 766554
No 122
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=79.39 E-value=36 Score=28.51 Aligned_cols=27 Identities=11% Similarity=0.103 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy14114 35 FESLAGRSDVTKLWTEKIVGDTAAVLT 61 (248)
Q Consensus 35 ~~~lE~~~d~~k~~~~~l~k~~~~yl~ 61 (248)
...||..+|..+..++++.|.++.++.
T Consensus 4 v~~lee~l~~~~~~l~Kl~K~~k~~~~ 30 (215)
T cd07604 4 VGALEESLEGDRVGLQKLKKAVKAIHN 30 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888899999999999998887754
No 123
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=79.16 E-value=39 Score=28.79 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Q psy14114 107 YGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLE 145 (248)
Q Consensus 107 ~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~ 145 (248)
+..++..+-.--..+|..+..+...+... +.||..|.+
T Consensus 58 l~~a~~~~~~e~e~~a~~H~~ia~~L~~~-~~~l~~f~~ 95 (242)
T cd07671 58 LKASFDQLKQQIENIGNSHIQLAGMLREE-LKSLEEFRE 95 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 33444444444455566666666666665 355555543
No 124
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=77.51 E-value=40 Score=27.93 Aligned_cols=28 Identities=7% Similarity=0.064 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy14114 34 HFESLAGRSDVTKLWTEKIVGDTAAVLT 61 (248)
Q Consensus 34 e~~~lE~~~d~~k~~~~~l~k~~~~yl~ 61 (248)
...++|..|+.++.-+++|+|.++.++.
T Consensus 3 ~~~~~E~~~~~le~~l~kl~K~~~~~~d 30 (200)
T cd07637 3 TIDEVETDVVEIEAKLDKLVKLCSGMIE 30 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999987755
No 125
>KOG2528|consensus
Probab=76.35 E-value=49 Score=30.78 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=61.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCC-----CCc
Q psy14114 32 DAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGP-----GTT 106 (248)
Q Consensus 32 ~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~-----~s~ 106 (248)
+-|..+.|.+||..+..+.+|-..+.....- ..+.+-..+ ..-+...-.+|.++...+..|.. +-+
T Consensus 322 ~ld~~~ve~~ve~~~~f~k~md~~~~~l~~~-----~~~~~k~~~----~~~kke~qk~g~a~~~l~~~f~~d~~~~s~~ 392 (490)
T KOG2528|consen 322 PLDLQEVEMQVERFKRFTKKMDDAVRQLNTT-----ANEFWKRKV----GGFKKEYQKMGSAFQTLAQAFEIDPTVDSRP 392 (490)
T ss_pred ccchHHHHHHHHhhhhhhhhhhHHHHHHhhh-----hHHHHHHhc----ccchHHHHHHHHHHHHHHHhhhcCccccccc
Confidence 5678999999999999999998888776442 111111111 11222346778888777766643 346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 107 YGTALIKVGQYEQKLGAAEREFVN 130 (248)
Q Consensus 107 ~g~aL~~~g~a~~~ia~~~~~~~~ 130 (248)
|..++...|.++..||++-.++-.
T Consensus 393 L~~ai~~~g~~y~~Ig~lfa~qpk 416 (490)
T KOG2528|consen 393 LNEAIGLTGDAYHEIGELFAEQPK 416 (490)
T ss_pred hhhhhhhhhHHHHHHHHHhhcccc
Confidence 888888999999999998766543
No 126
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=75.62 E-value=47 Score=27.84 Aligned_cols=52 Identities=15% Similarity=0.328 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhh
Q psy14114 107 YGTALIKVGQYEQKL-GAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLES 160 (248)
Q Consensus 107 ~g~aL~~~g~a~~~i-a~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~ 160 (248)
+|.|..++|.++... ..+...|..++.... .-|..+.. .-+.+...|=.++.
T Consensus 80 ~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l-~~~k~i~k-~RKkLe~rRLdyD~ 132 (215)
T cd07593 80 LGRAHCKIGTLQEEFADRLSDTFLANIERSL-AEMKEYHS-ARKKLESRRLAYDA 132 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHH
Confidence 444666666655553 445556666665433 33443332 33433333333333
No 127
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=72.20 E-value=59 Score=27.47 Aligned_cols=120 Identities=14% Similarity=0.243 Sum_probs=59.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH---------------------HHHHHHHHHHhhHhhhhhh
Q psy14114 106 TYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLE---------------------GEMKTIVKERSLLESKRLD 164 (248)
Q Consensus 106 ~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~---------------------~~~~~i~~~rkkl~~~RLd 164 (248)
++..++..+-.....|+..+..|...+. .+..||..+.. .-+..+.+++++.+++.-|
T Consensus 62 s~~~a~~~il~~~e~lA~~h~~~a~~L~-~~~~eL~~l~~~~e~~RK~~ke~~~k~~k~~~~a~~~leKAK~~Y~~~c~e 140 (234)
T cd07652 62 SFSNAYHSSLEFHEKLADNGLRFAKALN-EMSDELSSLAKTVEKSRKSIKETGKRAEKKVQDAEAAAEKAKARYDSLADD 140 (234)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556666666665553 45566555443 2334455555666666666
Q ss_pred hHHHHHH--HHhh-ccccccc------cchHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccchhHHHHHHHHH
Q psy14114 165 LDSCKNR--VRKA-RSLLGTQ------SNAERDLRIAQSEFDRQAEITKLLLEGVQT-SHTSHLRCLHEFVE 226 (248)
Q Consensus 165 ~Daak~k--~~ka-k~~~~~~------~~~e~el~~a~~~fe~~~e~~~~~m~~i~~-~e~e~~~~L~~lv~ 226 (248)
||.++.- ..+. -+.+... ..+..-++.|...|-.....+-..-..+.. ..|..+..|.++|.
T Consensus 141 ~Ekar~~~~~~~~~~~~k~~~~~~~~Ee~~~~K~~~A~~~Y~~~v~~~n~~q~e~~~~~~p~i~~~lq~li~ 212 (234)
T cd07652 141 LERVKTGDPGKKLKFGLKGNKSAAQHEDELLRKVQAADQDYASKVNAAQALRQELLSRHRPEAVKDLFDLIL 212 (234)
T ss_pred HHHHhccCCCccccccccchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6655543 1110 0000000 012223455666666666555554444443 35666667766653
No 128
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=69.01 E-value=72 Score=27.16 Aligned_cols=83 Identities=8% Similarity=0.124 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhHhhhhhhhHHHHHHHHhhcccccc-------cc-------chHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14114 147 EMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGT-------QS-------NAERDLRIAQSEFDRQAEITKLLLEGVQT 212 (248)
Q Consensus 147 ~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~-------~~-------~~e~el~~a~~~fe~~~e~~~~~m~~i~~ 212 (248)
-+.++.+++|..+..--+...|+.+++++-....+ .. -.+.+++.++.+|.+..- ....
T Consensus 129 ~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae~~~~k~~~~~~~~~~~~~~~~~~~~~~eK~k~k~~~~~~-------k~~~ 201 (241)
T cd07656 129 VLNELQTAMKTYHTYHAESKSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKL-------KCTK 201 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 34566666666666666666666666544211000 00 033455555665654432 2222
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHH
Q psy14114 213 SHTSHLRCLHEFVEAQVNYYANCH 236 (248)
Q Consensus 213 ~e~e~~~~L~~lv~aQ~~y~~~~~ 236 (248)
.+-+++.+|...=..|-.||....
T Consensus 202 akNeYll~l~~aN~~~~~yy~~~l 225 (241)
T cd07656 202 ARNEYLLNLAAANATIHKYFVQDL 225 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 346888899999888888887644
No 129
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=67.93 E-value=51 Score=31.51 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14114 185 AERDLRIAQSEFDRQAEITKLLLEGVQTS-HTSHLRCLHEFVEAQVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 185 ~e~el~~a~~~fe~~~e~~~~~m~~i~~~-e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l~ 247 (248)
+++.|..|...+....+.+...+..+-+. .++.-..|..+.+...+|++.+.+++..+..+|+
T Consensus 459 l~~~L~~a~~d~~~i~e~~~~el~~~~~~~~~~l~~~l~~~~~~hie~~~~~Le~W~~v~~~l~ 522 (524)
T COG5391 459 LEEQLAIAEKDAQEINEELKNELKFFFSVRNSDLEKILKSVADSHIEWAEENLEIWKSVKEQLD 522 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67778888888888888888887776664 5666669999999999999999999999988775
No 130
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=67.90 E-value=76 Score=26.99 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=13.0
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q psy14114 215 TSHLRCLHEFVEAQVNYYAN 234 (248)
Q Consensus 215 ~e~~~~L~~lv~aQ~~y~~~ 234 (248)
-+++..+...-.-|-.||..
T Consensus 179 N~Yll~i~~aN~~k~~Yy~~ 198 (234)
T cd07686 179 NQYVLAVKGAQLHQHQYYDF 198 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45666676666666666654
No 131
>PRK10869 recombination and repair protein; Provisional
Probab=65.24 E-value=1.3e+02 Score=28.87 Aligned_cols=55 Identities=9% Similarity=0.054 Sum_probs=27.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh--HHHHHHHHHHHHHHHHhhHh
Q psy14114 104 GTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQP--LQKFLEGEMKTIVKERSLLE 159 (248)
Q Consensus 104 ~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~p--L~~~l~~~~~~i~~~rkkl~ 159 (248)
+..++..+..+..++..+.++...+......--.+| |...-+ -+-.+...++|..
T Consensus 260 d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~-Rl~~l~~L~rKyg 316 (553)
T PRK10869 260 DSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQ-RLSKQISLARKHH 316 (553)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH-HHHHHHHHHHHhC
Confidence 444555555666666666665555555444333333 232222 4445555555544
No 132
>PRK11546 zraP zinc resistance protein; Provisional
Probab=62.52 E-value=44 Score=26.13 Aligned_cols=63 Identities=10% Similarity=0.073 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 143 FLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLE 208 (248)
Q Consensus 143 ~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~ 208 (248)
+.+....+....|.++..+|.+|.+..+ ..+++..+...+..|+...+.++.+........|.
T Consensus 55 I~~~f~~~t~~LRqqL~aKr~ELnALl~---~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~ 117 (143)
T PRK11546 55 IHNDFYAQTSALRQQLVSKRYEYNALLT---ANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMA 117 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666788889999999999988743 33333322222667888888777776655554443
No 133
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=61.74 E-value=98 Score=26.10 Aligned_cols=27 Identities=7% Similarity=0.056 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14114 110 ALIKVGQYEQKLGAAEREFVNSAHVSF 136 (248)
Q Consensus 110 aL~~~g~a~~~ia~~~~~~~~~~~~~~ 136 (248)
+-..+|.+..+|+..+.......+..+
T Consensus 62 ~sk~lG~~L~~i~~~~r~ie~~l~~~~ 88 (223)
T cd07605 62 GSQELGEALKQIVDTHKSIEASLEQVA 88 (223)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888887777777766544
No 134
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=58.59 E-value=1.1e+02 Score=27.28 Aligned_cols=62 Identities=10% Similarity=0.145 Sum_probs=36.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHHHHHHHHHHHHH
Q psy14114 136 FVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQA 200 (248)
Q Consensus 136 ~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el~~a~~~fe~~~ 200 (248)
-+..++.-|.....++...+++++..+..+.....++........+ +..++..|+..+++..
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e---~~~~I~~ae~~~~~~r 266 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSE---LNTEIAEAEKKLEQCR 266 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcC
Confidence 4444554555555566666677777777777766666544322222 5666666666666554
No 135
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=57.75 E-value=1.2e+02 Score=25.88 Aligned_cols=146 Identities=10% Similarity=0.048 Sum_probs=88.4
Q ss_pred hhHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhh
Q psy14114 87 LEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKL-GAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDL 165 (248)
Q Consensus 87 ~~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~i-a~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~ 165 (248)
...||.+|..+ |.+...+|.+.... ..+...|..+++...-.-|.+... .-+.+...|=.++..|-.|
T Consensus 76 ~s~lg~~L~~~----------g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k-~RKkLe~~RLd~D~~k~r~ 144 (244)
T cd07595 76 DSLLGKVLKLC----------GEAQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQK-QKKRLSKLVLDMDSARSRY 144 (244)
T ss_pred CChHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHH
Confidence 45677777554 55777777666654 668888999988666566766655 7777777788888888888
Q ss_pred HHHH---------HHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHH
Q psy14114 166 DSCK---------NRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCH 236 (248)
Q Consensus 166 Daak---------~k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~ 236 (248)
..|+ +|....+ ++-+. ++.+++.+++.+....-.+...=.+.+..=.+.+..-.+|.+-=+.-.....
T Consensus 145 ~ka~k~~~~~~~~~K~~~l~-eE~e~--ae~k~e~~~e~~~~~M~~~l~~E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~ 221 (244)
T cd07595 145 NAAHKSSGGQGAAAKVDALK-DEYEE--AELKLEQCRDALATDMYEFLAKEAEIASYLIDLIEAQREYHRTALSVLEAVL 221 (244)
T ss_pred HhccccccccccccccchHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7664 2221111 12222 6777777777776654333222011222224445555666666666666666
Q ss_pred HHHHHHHHhh
Q psy14114 237 KIMQDLKNEL 246 (248)
Q Consensus 237 ~~L~~l~~~l 246 (248)
..|.+.+..+
T Consensus 222 ~~l~~~~~~~ 231 (244)
T cd07595 222 PELQEQIEQS 231 (244)
T ss_pred HHHHHHHHhh
Confidence 6666665544
No 136
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=57.57 E-value=1.3e+02 Score=26.07 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy14114 33 AHFESLAGRSDVTKLWTEKIVG 54 (248)
Q Consensus 33 ~e~~~lE~~~d~~k~~~~~l~k 54 (248)
-.|..+.+|++.=...|..|..
T Consensus 5 g~Y~~~vkR~~DG~~~C~dl~~ 26 (258)
T cd07679 5 GNYKRTVKRIDDGHRLCNDLMN 26 (258)
T ss_pred CchHHHHHHHHhHHHHHHHHHH
Confidence 3466666777666666665554
No 137
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=55.59 E-value=2e+02 Score=27.78 Aligned_cols=115 Identities=15% Similarity=0.087 Sum_probs=58.8
Q ss_pred hhHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh--HHHHHHHHHHHHHHHHhhH----hh
Q psy14114 87 LEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQP--LQKFLEGEMKTIVKERSLL----ES 160 (248)
Q Consensus 87 ~~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~p--L~~~l~~~~~~i~~~rkkl----~~ 160 (248)
...|+.++-....-.+-|+.|+.+...+.+++..+.++..++..-....=.+| |..... -+-.+....||. +.
T Consensus 244 ~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~-Rl~~L~~l~RKY~~~~~~ 322 (557)
T COG0497 244 LSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEE-RLFALKSLARKYGVTIED 322 (557)
T ss_pred HHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHHHHHHhCCCHHH
Confidence 35566555554433334667888888888888888887777666555433332 222222 333344334433 33
Q ss_pred hhhhhHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHH
Q psy14114 161 KRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEI 202 (248)
Q Consensus 161 ~RLd~Daak~k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~ 202 (248)
.---+|..+.++..-...+.....++.++..++.+|......
T Consensus 323 l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~ 364 (557)
T COG0497 323 LLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEA 364 (557)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444332221111112566666666666655543
No 138
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=54.36 E-value=1.5e+02 Score=25.82 Aligned_cols=45 Identities=11% Similarity=0.209 Sum_probs=35.7
Q ss_pred HHHHHhhhhcCcc-cccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy14114 15 VVQLTEEKLGTSE-KTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTP 62 (248)
Q Consensus 15 ~~Q~~~Ek~G~~e-kTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~ 62 (248)
.-+|+-.++ + .+.+|.|...-+.||.-++.+++-|...+.--++|
T Consensus 25 iL~WLv~ry---dP~~~i~~~i~tE~dRV~Fik~v~~~~~tKa~IKLN~ 70 (267)
T PF10234_consen 25 ILRWLVKRY---DPDADIPGDIDTEQDRVFFIKSVAEFMATKARIKLNP 70 (267)
T ss_pred HHHHHHHHc---CCCCCCCCcCCcHHHHHHHHHHHHHHHHHHhheeecH
Confidence 346665555 4 45689999999999999999999999888776664
No 139
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=49.76 E-value=1.6e+02 Score=24.76 Aligned_cols=155 Identities=9% Similarity=0.052 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCCCCCcHHHHHHHH
Q psy14114 35 FESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKV 114 (248)
Q Consensus 35 ~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~aL~~~ 114 (248)
...+|..++.+...+++|++.++.++.. .. .|+.|=..|
T Consensus 4 l~~~E~d~~~L~~~~~kL~K~c~~~~~a------------------------~~-----------------~~~~A~~~F 42 (215)
T cd07601 4 LNVFEEDALQLSSYMNQLLQACKRVYDA------------------------QN-----------------ELKSATQAL 42 (215)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH------------------------HH-----------------HHHHHHHHH
Confidence 4678899999999999999988766442 11 222232333
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHHHHH
Q psy14114 115 GQYEQKLGAA--EREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIA 192 (248)
Q Consensus 115 g~a~~~ia~~--~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el~~a 192 (248)
+.+....+.- ...-++++.. .+|..|.. -+.++...|..|-.- -=|+....+.+=.+++ + .++..+
T Consensus 43 ~~~L~ef~~~~f~~~~dDe~~~---~~l~kFs~-~l~El~~~~~~L~~q--~~~~l~~pL~~F~k~D-----l-~~vKe~ 110 (215)
T cd07601 43 SKKLGEYEKQKFELGRDDEILV---STLKQFSK-VVDELSTMHSTLSSQ--LADTVLHPISQFMESD-----L-AEIMTL 110 (215)
T ss_pred HHHHHHHHhhccCCCCCcHHHH---HHHHHHHH-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-----h-HHHHHH
Confidence 3322222111 0113444433 46666665 666777666655321 1123333333322221 2 246677
Q ss_pred HHHHHHHHHHHHHHHHhhhh---ccc-hhH--HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 193 QSEFDRQAEITKLLLEGVQT---SHT-SHL--RCLHEFVEAQVNYYANCHKIMQDL 242 (248)
Q Consensus 193 ~~~fe~~~e~~~~~m~~i~~---~e~-e~~--~~L~~lv~aQ~~y~~~~~~~L~~l 242 (248)
+..|+...+.....+..... +.+ +.. ..=..+-.+...||..+.+....|
T Consensus 111 kK~FdK~s~~~d~al~K~~~l~k~k~~~~~~~Ea~~~l~~~R~~F~~~~ldYv~~l 166 (215)
T cd07601 111 KELFKAASNDHDGVLSKYSRLSKKRENTKVKIEVNDEVYACRKKQHQTAMNYYCAL 166 (215)
T ss_pred HHHHHHHhHHHHHHHHHHhhCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788877777776665443 211 222 333455555566666666655544
No 140
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=48.56 E-value=1.3e+02 Score=23.63 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHHHHHHH---HHHHHHHHH---------------HHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHH
Q psy14114 106 TYGTALIKVGQYEQKLG---AAEREFVNS---------------AHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDS 167 (248)
Q Consensus 106 ~~g~aL~~~g~a~~~ia---~~~~~~~~~---------------~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Da 167 (248)
.||.+...|+.+..+|. ..+.++... .-..||..|...+......+.+.++.++..|..|=-
T Consensus 24 el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~s~~q~~nyq~fI~~Le~~I~q~~~~~~~~~~~ve~~r~~w~e 103 (148)
T COG2882 24 ELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGVSAAQWQNYQQFISQLEVAIDQQQSQLSKLRKQVEQKREIWQE 103 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666665553 233333332 223455666666665666666666666666666655
Q ss_pred HHHHHH
Q psy14114 168 CKNRVR 173 (248)
Q Consensus 168 ak~k~~ 173 (248)
.+.+++
T Consensus 104 k~~~~k 109 (148)
T COG2882 104 KQIELK 109 (148)
T ss_pred HHHHHH
Confidence 555544
No 141
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=44.73 E-value=1.9e+02 Score=24.46 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy14114 32 DAHFESLAGRSDVTKLWTEKIVGDTAAVLTP 62 (248)
Q Consensus 32 ~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~ 62 (248)
.+.+.++-.....+...+..+.-.+.+|+.+
T Consensus 21 ~P~~~d~v~ka~K~~saL~a~~~A~~~f~Da 51 (231)
T cd07643 21 YPLWEDFVSKATKLHSQLRATIVATSAFLDA 51 (231)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666666666653
No 142
>PF08359 TetR_C_4: YsiA-like protein, C-terminal region; InterPro: IPR013570 The members of this family are thought to be TetR-type (tetracycline resistance) transcriptional regulators that bear particular similarity to YsiA (P94548 from SWISSPROT). This entry represents the C-terminal domain.; PDB: 1VI0_B.
Probab=43.70 E-value=74 Score=23.64 Aligned_cols=12 Identities=17% Similarity=0.465 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q psy14114 230 NYYANCHKIMQD 241 (248)
Q Consensus 230 ~y~~~~~~~L~~ 241 (248)
.|.+--.+++.+
T Consensus 68 ~~~~~i~~iI~e 79 (133)
T PF08359_consen 68 EYLRIIEEIIEE 79 (133)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 143
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=42.42 E-value=3.8e+02 Score=27.09 Aligned_cols=23 Identities=9% Similarity=-0.032 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy14114 36 ESLAGRSDVTKLWTEKIVGDTAA 58 (248)
Q Consensus 36 ~~lE~~~d~~k~~~~~l~k~~~~ 58 (248)
..++..+..+-.....+...+..
T Consensus 377 ~si~~~LStfS~~m~~~~~il~~ 399 (771)
T TIGR01069 377 QSIEQNLSTFSGHMKNISAILSK 399 (771)
T ss_pred hHHhhhhhHHHHHHHHHHHHHHh
Confidence 34444444444444444444443
No 144
>KOG1451|consensus
Probab=40.98 E-value=3.6e+02 Score=26.42 Aligned_cols=133 Identities=14% Similarity=0.189 Sum_probs=63.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHH-----HHHhhccccc
Q psy14114 106 TYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKN-----RVRKARSLLG 180 (248)
Q Consensus 106 ~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~-----k~~kak~~~~ 180 (248)
.+..||..++.|..+.++...+|-=...-+-..-=.-++.+.++++......|+.-|.-+----+ =++|-+++.
T Consensus 45 ~li~a~knls~a~~kfa~tl~~f~f~~igd~~tdde~~ia~slkefa~ll~~ve~er~~~v~~Ase~li~PlekFRkEq- 123 (812)
T KOG1451|consen 45 ELISALKNLSSAVRKFAQTLQEFKFECIGDAETDDEIFIATSLKEFASLLNQVEDERMRMVGNASESLIEPLEKFRKEQ- 123 (812)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhheeeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHH-
Confidence 34445555555544444443333211111111111234455666666666666655544322111 122211110
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHh---hhhccchhHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy14114 181 TQSNAERDLRIAQSEFDRQAEITKLLLEG---VQTSHTSHLRCLH-EFVEAQVNYYANCHKIMQDLKN 244 (248)
Q Consensus 181 ~~~~~e~el~~a~~~fe~~~e~~~~~m~~---i~~~e~e~~~~L~-~lv~aQ~~y~~~~~~~L~~l~~ 244 (248)
. --+..++.+|+.-.+..+..+.. +.++...++..-- ..=.-+.+||+.+++..-++|.
T Consensus 124 ----I-G~~KE~KkKydKe~ekfy~~LekHLhLSskkesqlqeAD~Qvd~~r~nFfe~SL~YV~~vQe 186 (812)
T KOG1451|consen 124 ----I-GTLKEEKKKYDKESEKFYQTLEKHLHLSSKKESQLQEADAQVDTQRKNFFEASLQYVAEVQE 186 (812)
T ss_pred ----h-hhhHHHHhhhhhhhHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 13556677888887777766655 2233333443222 2223345788888888777764
No 145
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=40.07 E-value=1.7e+02 Score=22.49 Aligned_cols=124 Identities=13% Similarity=0.048 Sum_probs=63.6
Q ss_pred hcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhc
Q psy14114 97 AGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKAR 176 (248)
Q Consensus 97 ~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak 176 (248)
+...+++-..+......+......+++.-..+...+. -++.-+...+.++......+..+.-.++.+..++.-
T Consensus 22 ~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~-----~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~-- 94 (150)
T PF07200_consen 22 FVKSLPQVQELQQEREELLAENEELAEQNLSLEPELE-----ELRSQLQELYEELKELESEYQEKEQQQDELSSNYSP-- 94 (150)
T ss_dssp HGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH--
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH--
Confidence 3344444444555555555555566554444333322 233334445555555555555555555555444421
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHH
Q psy14114 177 SLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCH 236 (248)
Q Consensus 177 ~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~ 236 (248)
.. +...|..+-..-++..+.. ...+++.+.+.=.-|..|+..-..||.+..
T Consensus 95 ----~~--l~~~L~~~~~e~eeeSe~l---ae~fl~g~~d~~~Fl~~f~~~R~~yH~R~~ 145 (150)
T PF07200_consen 95 ----DA--LLARLQAAASEAEEESEEL---AEEFLDGEIDVDDFLKQFKEKRKLYHLRRA 145 (150)
T ss_dssp ----HH--HHHHHHHHHHHHHHHHHHH---C-S-SSSHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ----HH--HHHHHHHHHHHHHHHHHHH---HHHHhCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 11 3445555555445444333 356777766655578899999999998864
No 146
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=38.38 E-value=2.3e+02 Score=23.57 Aligned_cols=97 Identities=14% Similarity=0.216 Sum_probs=56.5
Q ss_pred HhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhh---c-
Q psy14114 138 QPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQT---S- 213 (248)
Q Consensus 138 ~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~---~- 213 (248)
.+|+.|.+ -+.++...|..|-.-- =|+....+.+=.+++ + .++..++.+|+...+.....+...+. +
T Consensus 67 ~sl~ef~~-~~~el~d~r~~L~~~~--~~~l~~pL~~F~ked-----l-~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kk 137 (207)
T cd07635 67 ASLQEFSN-FLKNLEEQREIMALNV--TETLIKPLERFRKEQ-----L-GAVKEEKKKFDKETEKNYSLLEKHLNLSAKK 137 (207)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHhhhHHHHHHHHHHhccCCC
Confidence 77777777 7777777775443221 122233333221111 3 35777888999999888888877332 2
Q ss_pred -cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 214 -HTSHLRCLHEFVEAQVNYYANCHKIMQDLK 243 (248)
Q Consensus 214 -e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~ 243 (248)
+++.-..=..+-.....||+.+.+..-+|+
T Consensus 138 k~~e~~EA~~~l~~~r~~F~~~sLdYv~qin 168 (207)
T cd07635 138 KEPQLQEADVQVEQNRQHFYELSLEYVCKLQ 168 (207)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333445566666678888877766554
No 147
>KOG0976|consensus
Probab=38.24 E-value=3.6e+02 Score=27.49 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=51.6
Q ss_pred hHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccch
Q psy14114 137 VQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTS 216 (248)
Q Consensus 137 l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e 216 (248)
....-+.++.+++....+.+-|+++-+.+..-+++++-+... ++.+++.++.+.+..+-.+......+.....+
T Consensus 90 yRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~------~q~d~ke~etelE~~~srlh~le~eLsAk~~e 163 (1265)
T KOG0976|consen 90 YRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQG------AQDDKKENEIEIENLNSRLHKLEDELSAKAHD 163 (1265)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHH
Confidence 334445677789999999999999999999999999865422 56667777777776665555443334444333
Q ss_pred hH
Q psy14114 217 HL 218 (248)
Q Consensus 217 ~~ 218 (248)
++
T Consensus 164 If 165 (1265)
T KOG0976|consen 164 IF 165 (1265)
T ss_pred HH
Confidence 33
No 148
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=38.14 E-value=2.5e+02 Score=23.91 Aligned_cols=56 Identities=13% Similarity=0.272 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114 186 ERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNEL 246 (248)
Q Consensus 186 e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l~~~l 246 (248)
...+..++.=|+... .....+...-..+..|..=|.....=|..+..-|+++..++
T Consensus 166 kr~I~KSrPYfe~K~-----~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeI 221 (239)
T PF05276_consen 166 KRAIKKSRPYFELKA-----KFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEI 221 (239)
T ss_pred HHHHHhhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666555333 22233333345666778888888888888999998887764
No 149
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.38 E-value=2.6e+02 Score=23.77 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=60.6
Q ss_pred HHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHH
Q psy14114 149 KTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQ 228 (248)
Q Consensus 149 ~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ 228 (248)
.+|.+.-|++.--.-.||..-.|+..+.....+. -++.+|..--.++....|+...++.+--.++-..+..-..+|+.+
T Consensus 8 ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~QKE-K~E~DLKkEIKKLQR~RdQIK~W~~~~diKdk~~L~e~Rk~IE~~ 86 (233)
T PF04065_consen 8 QEIDRTLKKVQEGVEEFDEIYEKVESATNQNQKE-KLEADLKKEIKKLQRLRDQIKTWLSSNDIKDKKKLLENRKLIEEQ 86 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCcchHH-HHHHHHHHHHHHHHHHHHHHHHHccCcccccHHHHHHHHHHHHHH
Confidence 3566777888888888888888887643222211 167777777777888888888777642223445666777888888
Q ss_pred HHHHHHHHH
Q psy14114 229 VNYYANCHK 237 (248)
Q Consensus 229 ~~y~~~~~~ 237 (248)
++=|+.|-.
T Consensus 87 MErFK~vEk 95 (233)
T PF04065_consen 87 MERFKVVEK 95 (233)
T ss_pred HHHHHHHHH
Confidence 888877643
No 150
>KOG0979|consensus
Probab=36.50 E-value=5.2e+02 Score=26.97 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHH--HH---H--HHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhc
Q psy14114 105 TTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQ--KF---L--EGEMKTIVKERSLLESKRLDLDSCKNRVRKAR 176 (248)
Q Consensus 105 s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~--~~---l--~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak 176 (248)
..+-..+..++++..+|-+....+...|+. |-+... .. + ...|-.+.+++.++.-.+.++|.++..+++..
T Consensus 191 ~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~-~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~ 268 (1072)
T KOG0979|consen 191 KSLEDKLTTKTEKLNRLEDEIDKLEKDVER-VRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLE 268 (1072)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777776666666666543 222111 00 0 01244667778888888999999998887654
No 151
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=33.29 E-value=1.8e+02 Score=20.73 Aligned_cols=67 Identities=16% Similarity=0.125 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14114 143 FLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQT 212 (248)
Q Consensus 143 ~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~ 212 (248)
......++....|..+...|.++..... +-.++......+-+++..++..+..........+..++.
T Consensus 53 ~~~~~~~~~~~~r~~~~~~r~~l~~ll~---~~~~D~~~i~a~~~~~~~~~~~l~~~~~~~~~~~~~~Lt 119 (125)
T PF13801_consen 53 LMDEFRQEMRALRQELRAARQELRALLA---APPPDEAAIEALLEEIREAQAELRQERLEHLLEIRAVLT 119 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---CSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344555666667777777766644432 112221111124456666666666666555555555554
No 152
>KOG2856|consensus
Probab=32.81 E-value=3.9e+02 Score=24.49 Aligned_cols=71 Identities=8% Similarity=0.084 Sum_probs=28.1
Q ss_pred HHHHHhhHhhhhhhhHHHHHHHHhhcccccccc----chHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHH
Q psy14114 151 IVKERSLLESKRLDLDSCKNRVRKARSLLGTQS----NAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCL 221 (248)
Q Consensus 151 i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~----~~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L 221 (248)
+..+|+.....+-+=-+|.++..+++.+.+-.+ -+.+.++.++.+.....+.+...|.+|-.-.+-++..+
T Consensus 144 vE~ak~~yh~ack~EksA~~re~n~kaDsSvspeq~kKlqdrveK~k~evqktkekYektl~el~~yt~~YmE~M 218 (472)
T KOG2856|consen 144 VEAAKKAYHAACKEEKSALTREQNAKADSSVSPEQLKKLQDRVEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDM 218 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Confidence 333344444444444444444544443321100 03333444444444444444444444444334344433
No 153
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.53 E-value=1.4e+02 Score=22.90 Aligned_cols=52 Identities=10% Similarity=0.161 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHH-HHHHHHHHHHHHHHHHHHH
Q psy14114 185 AERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCL-HEFVEAQVNYYANCHKIMQ 240 (248)
Q Consensus 185 ~e~el~~a~~~fe~~~e~~~~~m~~i~~~e~e~~~~L-~~lv~aQ~~y~~~~~~~L~ 240 (248)
.+.||+.+++.|++...++... |-.+ .+.++.| .+|=+.+..+-..+..+|-
T Consensus 39 ~q~ELe~~K~~ld~~rqel~~H---Fa~s-AeLlktl~~dYqklyqHmA~ss~~Llp 91 (138)
T COG3105 39 LQYELEKVKAQLDEYRQELVKH---FARS-AELLKTLAQDYQKLYQHMAKSSTSLLP 91 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHhhHhhhCc
Confidence 5678888888888777655532 2222 4344433 3444444444444444433
No 154
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.04 E-value=3.4e+02 Score=23.20 Aligned_cols=168 Identities=10% Similarity=0.081 Sum_probs=84.4
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHhcccCC-----C
Q psy14114 29 TELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFG-----P 103 (248)
Q Consensus 29 Tel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~~~~~~-----~ 103 (248)
+++.+--..+...+-.+.++..+|.+....|... .+--..++.....--|.=..|...++.+|...+..+. .
T Consensus 54 ~e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d---~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~ 130 (240)
T cd07667 54 AAIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVE---LREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDM 130 (240)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777788888999999999999888877652 1101111111111111111245667777766655431 1
Q ss_pred CCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccc
Q psy14114 104 GTTYGTALI---KVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLG 180 (248)
Q Consensus 104 ~s~~g~aL~---~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~ 180 (248)
+..|..+|. .++++.+.+-..+..-...++.. ++ +. . -+|-+..-...++.++... .
T Consensus 131 ~~~yl~~Lke~~~Y~~slk~vlK~RdqkQ~d~E~l--------~E-~l-~---------~rre~~~kLe~~ie~~~~~-v 190 (240)
T cd07667 131 TEDFLPVLREYILYSESMKNVLKKRDQVQAEYEAK--------LE-AV-A---------LRKEERPKVPTDVEKCQDR-V 190 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH-HH-H---------HHHHHHHHHHHHHHHHHHH-H
Confidence 234555544 34555555533333322222210 00 11 0 1233333333333332211 1
Q ss_pred cccchHHHHHHHHHHHHHHH-HHHHHHHHhhhhccchhHHHH
Q psy14114 181 TQSNAERDLRIAQSEFDRQA-EITKLLLEGVQTSHTSHLRCL 221 (248)
Q Consensus 181 ~~~~~e~el~~a~~~fe~~~-e~~~~~m~~i~~~e~e~~~~L 221 (248)
+. ..+++..=...|+... .+....+.++-+.+++++..+
T Consensus 191 e~--f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~~i~fy~~~ 230 (240)
T cd07667 191 EC--FNADLKADMERWQNNKRQDFRQLLMGMADKNIQYYEKC 230 (240)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 4556655566788775 466667777777767666643
No 155
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=30.99 E-value=30 Score=32.93 Aligned_cols=51 Identities=10% Similarity=0.242 Sum_probs=33.4
Q ss_pred hHhhHHHHHHHHHHHHhhhhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14114 4 FVKDAGSALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAV 59 (248)
Q Consensus 4 ~~~~~~~~~~r~~Q~~~Ek~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~y 59 (248)
.++.+.+++|+.-+.+...+ ..++.+|.++|+|++.+.+.++.....+-.|
T Consensus 372 aid~it~kvN~iiek~n~~f-----e~i~~ef~~ve~Ri~~l~~~v~d~~~d~wsy 422 (550)
T PF00509_consen 372 AIDQITKKVNSIIEKMNKQF-----EQIDKEFNEVEKRIDNLEKKVDDKIADVWSY 422 (550)
T ss_dssp HHHHHHHHHHHHHHTTTCEE-----EECSCSSSTTGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccch-----hhHHHHHHHHHHHHHHHHHhhhccchhhhcc
Confidence 45556666655444443333 3467788888888888888887777766665
No 156
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=30.92 E-value=3.3e+02 Score=22.97 Aligned_cols=187 Identities=16% Similarity=0.219 Sum_probs=93.4
Q ss_pred HhhhhcCccc--ccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHH
Q psy14114 19 TEEKLGTSEK--TELDAHFESLAGRSDVTKLWTEKIVGDTAAVLT-PNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMT 95 (248)
Q Consensus 19 ~~Ek~G~~ek--Tel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~-~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~ 95 (248)
+.++++.+|| -++-..|..+-.+.-.++.-.+.|.+.+..|-+ ++|+.+. ....||.++.
T Consensus 16 i~~~i~~vEkhFg~lC~~~a~ytRKtArLRDk~D~lak~l~~yA~~E~~~l~~-----------------~L~~fae~la 78 (219)
T PF06730_consen 16 IQDRITNVEKHFGELCQLFAAYTRKTARLRDKGDELAKQLQDYANTENPNLKL-----------------GLKNFAECLA 78 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcCCccHhh-----------------HHHHHHHHHH
Confidence 4566666664 246778888888999999999999999999965 3343332 1233443333
Q ss_pred HhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHH------HHHHHHHHhhHhhhhhhhHHHH
Q psy14114 96 EAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGE------MKTIVKERSLLESKRLDLDSCK 169 (248)
Q Consensus 96 ~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~------~~~i~~~rkkl~~~RLd~Daak 169 (248)
.. ..|..+... ..+.+|.+-...|...+. .--+-|+.+...- .+.+.+.|.+--+-|--.-.+-
T Consensus 79 ~v-------qDYRqa~v~--RlE~KVv~pL~~Y~~~cK-~~r~elK~~~~ar~kEikq~~~Leklr~k~psdr~~isqae 148 (219)
T PF06730_consen 79 KV-------QDYRQAEVE--RLEAKVVEPLSQYGTICK-HARDELKKFNKARNKEIKQLKQLEKLRQKNPSDRQIISQAE 148 (219)
T ss_pred HH-------HHHHHHHHH--HHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchhhhHHH
Confidence 32 122222111 112222222222222111 1122223333222 2233333444333332233444
Q ss_pred HHHHhhccccccccchHHHHHHHHHHHHHHH-HHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 170 NRVRKARSLLGTQSNAERDLRIAQSEFDRQA-EITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDL 242 (248)
Q Consensus 170 ~k~~kak~~~~~~~~~e~el~~a~~~fe~~~-e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~~~~~L~~l 242 (248)
+.+.+++-+-.. .-..|+..-+.|+... .+....+-+ ++..=..|..-=++-|..|+..+..+
T Consensus 149 ~el~kas~~~~r---t~~~Lee~i~~FEkqKl~DlK~i~sd-------Fv~iEM~fHaKALEv~T~a~q~i~~i 212 (219)
T PF06730_consen 149 SELQKASVDATR---TTKQLEETIDNFEKQKLKDLKKIFSD-------FVTIEMVFHAKALEVYTAAYQDIQNI 212 (219)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 555554322111 3457888888899875 333333333 33333455555566677777777654
No 157
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=30.85 E-value=64 Score=27.97 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHH
Q psy14114 194 SEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYAN 234 (248)
Q Consensus 194 ~~fe~~~e~~~~~m~~i~~~e~e~~~~L~~lv~aQ~~y~~~ 234 (248)
..|+-..-.....-..|-.||..-+..+..||+||.+|...
T Consensus 91 W~FD~~aG~~Ei~~RrIGRNEL~aI~~~~ayvdAQ~eYa~~ 131 (271)
T PF11453_consen 91 WRFDTAAGREEILTRRIGRNELAAIQTLLAYVDAQREYAQK 131 (271)
T ss_pred ceecHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc
Confidence 44554442222222346668888999999999999999987
No 158
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.84 E-value=3.3e+02 Score=23.08 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhHhhhhhhhHHHH
Q psy14114 147 EMKTIVKERSLLESKRLDLDSCK 169 (248)
Q Consensus 147 ~~~~i~~~rkkl~~~RLd~Daak 169 (248)
.+..+.++|++.+.+-.+++.++
T Consensus 121 ~~~~l~KaK~~Y~~~c~e~e~~~ 143 (261)
T cd07648 121 TTAALQKAKEAYHARCLELERLR 143 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777776666666654
No 159
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.60 E-value=3.4e+02 Score=23.15 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhHhhhhhhhHHHHH------HHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhh----ccc
Q psy14114 146 GEMKTIVKERSLLESKRLDLDSCKN------RVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQT----SHT 215 (248)
Q Consensus 146 ~~~~~i~~~rkkl~~~RLd~Daak~------k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~~m~~i~~----~e~ 215 (248)
..+..+.++|++.+.+.-+++.++. .+.|.. .+..+ +.+++..+..+|+.....+...|..+.+ -|.
T Consensus 120 ~~~~~l~kaK~~Y~~~cke~e~a~~~~~s~k~leK~~-~K~~k--a~~~y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee 196 (261)
T cd07674 120 VQSQHLQKSRENYHSKCVEQERLRREGVPQKELEKAE-LKTKK--AAESLRGSVEKYNRARGDFEQKMLESAQKFQDIEE 196 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777766652 111211 01111 4556666667777666555555544333 244
Q ss_pred hhHHHHHHHHHHH
Q psy14114 216 SHLRCLHEFVEAQ 228 (248)
Q Consensus 216 e~~~~L~~lv~aQ 228 (248)
+.+..|.+++..-
T Consensus 197 ~Ri~~lk~~L~~~ 209 (261)
T cd07674 197 THLRHMKLLIKGY 209 (261)
T ss_pred HHHHHHHHHHHHH
Confidence 4554444444433
No 160
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=29.78 E-value=7.5e+02 Score=26.82 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=8.7
Q ss_pred HHHHHhhHhhhhhhhHHHHHHH
Q psy14114 151 IVKERSLLESKRLDLDSCKNRV 172 (248)
Q Consensus 151 i~~~rkkl~~~RLd~Daak~k~ 172 (248)
+...+..+...+-+++.+...+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~ 299 (1353)
T TIGR02680 278 YDQLSRDLGRARDELETAREEE 299 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444443333
No 161
>KOG3540|consensus
Probab=29.09 E-value=4.5e+02 Score=25.01 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhHhhhhhhhHHHHHHH
Q psy14114 143 FLEGEMKTIVKERSLLESKRLDLDSCKNRV 172 (248)
Q Consensus 143 ~l~~~~~~i~~~rkkl~~~RLd~Daak~k~ 172 (248)
|......-=.++|+++++.--.|.-|-++-
T Consensus 251 F~kAkmrleekhr~rmd~VmkEW~~ae~qa 280 (615)
T KOG3540|consen 251 FQKAKMRLEEKHRKRMDKVMKEWEEAETQA 280 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333333344456666666666666665533
No 162
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.83 E-value=3.6e+02 Score=22.83 Aligned_cols=149 Identities=13% Similarity=0.115 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhhhh---cCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCc
Q psy14114 10 SALSRVVQLTEEKL---GTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSN 86 (248)
Q Consensus 10 ~~~~r~~Q~~~Ek~---G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~ 86 (248)
.+|+++-+.++.-- +.++-+.+.+-+...-..+-.+|.+..+=+.....|.+...+.+....--+++..+ +.. .
T Consensus 79 ~kLg~v~~~v~dl~~~QA~~d~~tl~d~L~~~~~~~~~vKealtnR~~~~re~~qAq~~~~~K~~~~~rlk~s--~~i-~ 155 (230)
T cd07625 79 EKFGKVLTAVGDIDSIQATVDMATLYDGLEWISRDAYVVKEALTNRHLLMRELIQAQQNTKSKQEAARRLKAK--RDI-N 155 (230)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCC-C
Confidence 34444444444322 23345557778888888888888888888888888876422221111111122111 111 1
Q ss_pred hhHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhh
Q psy14114 87 LEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLD 164 (248)
Q Consensus 87 ~~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd 164 (248)
+..+-++..+.-..-.....+ =.++..+-..|-.....|.......|-.-|..|+...+.--.+..+-+++.|+|
T Consensus 156 ~~KvdeA~~~l~eA~~~e~~l---~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~erk~l~~lE~~r~d 230 (230)
T cd07625 156 PLKVDEAIRQLEEATKHEHDL---SLKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEYERKKLSLLERIRLD 230 (230)
T ss_pred hHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 223322222211100000111 113444444445555556666666666666666664443333444445565554
No 163
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.38 E-value=3.8e+02 Score=22.92 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=28.7
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy14114 29 TELDAHFESLAGRSDVTKLWTEKIVGDTAAVLT 61 (248)
Q Consensus 29 Tel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~ 61 (248)
+++.+--..++..+-.+.....+|.+....|.+
T Consensus 57 ~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~ 89 (243)
T cd07666 57 TEMNEYVEAFSQKINVLDKISQRIYKEQREYFE 89 (243)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHH
Confidence 567888888999999999999999999988865
No 164
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=28.32 E-value=3.7e+02 Score=22.78 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=44.7
Q ss_pred hhHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhh
Q psy14114 87 LEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKL-GAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDL 165 (248)
Q Consensus 87 ~~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~i-a~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~ 165 (248)
...||.+|.. +|.+..++|.+...+ ..+...|..+++...-.-|..... .-+.+...|=.++..|--+
T Consensus 88 ~S~~G~aL~~----------~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k-~RKkLe~rRLdyD~~K~r~ 156 (229)
T cd07616 88 GTAYGNALIK----------CGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITK-ERKLLQNKRLDLDAAKTRL 156 (229)
T ss_pred CCcHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4567888755 455888888777764 556778888887666555554444 5565555555555555554
Q ss_pred H
Q psy14114 166 D 166 (248)
Q Consensus 166 D 166 (248)
-
T Consensus 157 ~ 157 (229)
T cd07616 157 K 157 (229)
T ss_pred h
Confidence 3
No 165
>KOG0810|consensus
Probab=27.84 E-value=4.3e+02 Score=23.35 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14114 220 CLHEFVEAQVNYYANCHKIMQ 240 (248)
Q Consensus 220 ~L~~lv~aQ~~y~~~~~~~L~ 240 (248)
.+..|-..|.+|..+|.+.+.
T Consensus 135 ~M~~f~~~~~~~r~~~k~~i~ 155 (297)
T KOG0810|consen 135 LMNEFNRTQSKYREEYKERIQ 155 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445777777777777766553
No 166
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=27.27 E-value=1.2e+02 Score=22.80 Aligned_cols=43 Identities=9% Similarity=0.278 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhhcCc-ccccC--ChHHHHHHHHHHHHHHHHHHH
Q psy14114 10 SALSRVVQLTEEKLGTS-EKTEL--DAHFESLAGRSDVTKLWTEKI 52 (248)
Q Consensus 10 ~~~~r~~Q~~~Ek~G~~-ekTel--~~e~~~lE~~~d~~k~~~~~l 52 (248)
.++.++.+.+.+.+-++ .+-.+ -+|+..|+.+++.+..-...+
T Consensus 70 ~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l 115 (118)
T TIGR01837 70 RNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEEL 115 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555333 22122 478888888888888776655
No 167
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=26.45 E-value=3.8e+02 Score=22.34 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHH
Q psy14114 118 EQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVR 173 (248)
Q Consensus 118 ~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~ 173 (248)
+..|..+-..+++-.--+-|+.|+.-+..-=..+...|..+...+..|+.|-.+-.
T Consensus 15 q~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs 70 (207)
T PF05546_consen 15 QETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRS 70 (207)
T ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455556666666554455677778888888888888877754
No 168
>PF08066 PMC2NT: PMC2NT (NUC016) domain; InterPro: IPR012588 Exosomes are nano-compartments that function in the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA) [, ]. Exosomes occur in both archaea and eukaryotes, and have a similar overall structure to each other and to bacterial/organelle PNPases (polynucleotide phosphorylases; 2.7.7.8 from EC) [], consisting of a barrel structure composed of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. There are two types of exosomes in eukaryotes, cytoplasmic exosomes that are responsible for 3'-5' exoribonuclease degradation of mRNAs, and nuclear exosomes that degrade pre-mRNAs (such as nonsense transcripts) and degrade rRNAs, snRNAs and snoRNAs. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. There are several accessory proteins that help degrade, unwind or polyadenylate RNA substrate before they enter the exosome. This entry represents the N-terminal domain of Rrp6 (exosome component 10 in humans), a nuclear exosome accessory factor that interacts with the bottom of the hexameric PH-ring opposite the cap. Rrp6 functions as a hydrolytic exonuclease, and is homologous to RNase-D in Escherichia coli. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0006396 RNA processing, 0000176 nuclear exosome (RNase complex)
Probab=26.36 E-value=1.7e+02 Score=20.60 Aligned_cols=58 Identities=9% Similarity=0.131 Sum_probs=33.9
Q ss_pred HhhHHHHHHHHHHHHhhhhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy14114 5 VKDAGSALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTP 62 (248)
Q Consensus 5 ~~~~~~~~~r~~Q~~~Ek~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~ 62 (248)
+...+.++-...+.+....|.......+.+-..++.+.+.+-.....|+.++..++..
T Consensus 30 ld~~s~rll~l~n~ll~~~~~~~~~~~~~~~~d~d~~~~~vvd~~D~LlEk~D~~LDe 87 (91)
T PF08066_consen 30 LDEQSQRLLSLINSLLKSAGSKSNISSPDDVDDVDERWDSVVDVNDSLLEKADISLDE 87 (91)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccCCCccccHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 3334444443333333334333222234456677778888888888888888777653
No 169
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=26.23 E-value=3.7e+02 Score=22.11 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=17.3
Q ss_pred HhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHH
Q psy14114 135 SFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRV 172 (248)
Q Consensus 135 ~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~ 172 (248)
....||..... +..+..+..+..++-...+-.+++++
T Consensus 59 ~L~epL~~a~~-e~~eL~k~L~~y~kdK~~L~~~k~rl 95 (201)
T PF13851_consen 59 RLSEPLKKAEE-EVEELRKQLKNYEKDKQSLQNLKARL 95 (201)
T ss_pred HHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555444 44444444444444444444444444
No 170
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=25.96 E-value=5.1e+02 Score=24.72 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhh
Q psy14114 140 LQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKA 175 (248)
Q Consensus 140 L~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~ka 175 (248)
|.+.++-+||.+.+...|.++.--|++-....+.++
T Consensus 118 L~r~v~YeIP~lkKqi~k~~q~~~d~~kk~~e~~~~ 153 (507)
T PF05600_consen 118 LVRNVNYEIPALKKQIAKCQQQLEDLDKKEEELQRS 153 (507)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344455578888888888888877777766666543
No 171
>KOG2398|consensus
Probab=25.93 E-value=6.4e+02 Score=24.76 Aligned_cols=82 Identities=17% Similarity=0.046 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHH
Q psy14114 126 REFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKL 205 (248)
Q Consensus 126 ~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el~~a~~~fe~~~e~~~~ 205 (248)
......+...+..+........-+++.+..-++...+-.|.....++.+++++ ++.++...-.+|+..-+....
T Consensus 116 ~~~~~~~~~~~e~e~~~~~~k~~~~~~k~~~~i~~~~~~y~~~~~~~~~vr~~------w~~~~~~~c~~fQ~~Ee~rl~ 189 (611)
T KOG2398|consen 116 CAKSNYLHRCQEKESLKEKEKRKKELAKAELKIKEAREEYRSLVAKLEKVRKD------WEQEMTDLCLKFQEIEESRLS 189 (611)
T ss_pred HHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555567777888888888888888888888776543 677787777788877776666
Q ss_pred HHHhhhhc
Q psy14114 206 LLEGVQTS 213 (248)
Q Consensus 206 ~m~~i~~~ 213 (248)
.|.+.+-.
T Consensus 190 ~lk~~l~~ 197 (611)
T KOG2398|consen 190 FLKEELWL 197 (611)
T ss_pred HHHHHHHH
Confidence 66665544
No 172
>cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family. Members of the GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to a receptor-mediated elevation in the concentration of intracellular free Ca2+ ([Ca2+]i). However, unlike RASAL, RASAL4 does not sense oscillations in [Ca2+]i.
Probab=25.77 E-value=4e+02 Score=23.99 Aligned_cols=122 Identities=12% Similarity=0.133 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCC-cchh-HHHHHHhhhcCCCCC---CchhHHHHHHH-Hh-----------c
Q psy14114 36 ESLAGRSDVTKLWTEKIVGDTAAVLTPNPG-NRVE-DFLFEKIEKKRPSRL---SNLEYLGLDMT-EA-----------G 98 (248)
Q Consensus 36 ~~lE~~~d~~k~~~~~l~k~~~~yl~~np~-~r~~-~~~~~k~~~~~~~~~---~~~~~Lg~~m~-~~-----------~ 98 (248)
+-+|...+.++.+++.++..+..-.+..|- .|.- ..+++.+..+-|... .....+|..+- .+ +
T Consensus 141 e~ie~n~~~L~~~~~~~l~~I~~S~~~~P~~iR~i~~~l~~~v~~rFp~~~~~~~~~~~VggFiFLRFicPAIvSP~~f~ 220 (337)
T cd05395 141 EVIEQSSQLLQSYLGELLTAILQSASYCPLVIRAVFRQLFLRVQERFPDPQYRKVKFIAVTSFLCLRFFSPAIMSPKLFH 220 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHHHHHhccccCCchhcC
Confidence 346778888888888888777654443332 2211 123333333333322 11234444432 11 1
Q ss_pred c-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhH
Q psy14114 99 N-AFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLL 158 (248)
Q Consensus 99 ~-~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl 158 (248)
- .-.++..-...|..++.+.+.||+... +.......|+.||+.|+...+..+..--.++
T Consensus 221 L~~~~p~~~~rR~LtLIAKvLQnLAN~~~-f~~~~KE~~M~plN~FI~~~~~~~~~FL~~i 280 (337)
T cd05395 221 LREKHADARTSRTLLLLAKAVQTVGNMDT-LACRAKEPWMVPLQPAIQQGITQLKDFITRL 280 (337)
T ss_pred ccCCCCCHHHHhHHHHHHHHHHHHhCcCc-cCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011233456679999999999988543 3234467899999999987766665444443
No 173
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=24.93 E-value=5.7e+02 Score=23.84 Aligned_cols=56 Identities=21% Similarity=0.147 Sum_probs=35.9
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHHHHH
Q psy14114 128 FVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIA 192 (248)
Q Consensus 128 ~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el~~a 192 (248)
+-..|-.+-+.|....+++=.+++..+.+.|.....-++..+--|+|- ++.||+..
T Consensus 232 LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKi---------WE~EL~~V 287 (424)
T PF03915_consen 232 LRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKI---------WESELQKV 287 (424)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH
T ss_pred HHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH---------HHHHHHHH
Confidence 334455666777777777777777777887877777777777777764 66666654
No 174
>KOG1247|consensus
Probab=24.84 E-value=2.3e+02 Score=26.57 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=32.0
Q ss_pred hHhhHHHHHHHHHHHHhhhhcCcc-cccCChHHHHHHHHHHHHHH
Q psy14114 4 FVKDAGSALSRVVQLTEEKLGTSE-KTELDAHFESLAGRSDVTKL 47 (248)
Q Consensus 4 ~~~~~~~~~~r~~Q~~~Ek~G~~e-kTel~~e~~~lE~~~d~~k~ 47 (248)
+.+++|-++||+..++.-+.|+.- .-+++.+...+-+.|..+-.
T Consensus 396 Ll~NLGNFvNR~l~fv~~~~~g~Vp~~~~~~~~~~~~~dv~~~~~ 440 (567)
T KOG1247|consen 396 LLNNLGNFVNRVLKFVAAKYNGVVPEMELTSGDKKLLEDVNELLA 440 (567)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccceeecCChHHHHHHHHHHHH
Confidence 578999999999999999998873 33565556666555554433
No 175
>PF08663 HalX: HalX domain; InterPro: IPR013971 HalX is a protein of unknown function, previously mis-annotated as HoxA-like transcriptional regulator. It is C-terminal to a CheY-like superfamily domain and suggests a role as a response regulator.
Probab=23.78 E-value=1.4e+02 Score=20.32 Aligned_cols=27 Identities=7% Similarity=0.153 Sum_probs=23.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14114 31 LDAHFESLAGRSDVTKLWTEKIVGDTA 57 (248)
Q Consensus 31 l~~e~~~lE~~~d~~k~~~~~l~k~~~ 57 (248)
-+++|.+|..+++.++.-...++....
T Consensus 34 ~seeY~eL~~ri~~lr~~ld~~~~~~d 60 (71)
T PF08663_consen 34 ESEEYQELEDRIEELRAELDDTLDEFD 60 (71)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 499999999999999999998887654
No 176
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.60 E-value=3.9e+02 Score=24.28 Aligned_cols=111 Identities=19% Similarity=0.250 Sum_probs=56.2
Q ss_pred hHhhHHHHHHHHHHHHh---hhhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcC
Q psy14114 4 FVKDAGSALSRVVQLTE---EKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKR 80 (248)
Q Consensus 4 ~~~~~~~~~~r~~Q~~~---Ek~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~ 80 (248)
...+++.++.|+.+-+. ||+++.|+. +...|..+-++ ++.....+-+....|-+.+-+......-...|+.
T Consensus 235 ~~~~~~~~L~kl~~~i~~~lekI~sREk~-iN~qle~l~~e---Yr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Ise-- 308 (359)
T PF10498_consen 235 ALPETKSQLDKLQQDISKTLEKIESREKY-INNQLEPLIQE---YRSAQDELSEVQEKYKQASEGVSERTRELAEISE-- 308 (359)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--
Confidence 34566777777765443 777777774 67666655555 4444455555555554432111000000011111
Q ss_pred CCCCCchhHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 81 PSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFV 129 (248)
Q Consensus 81 ~~~~~~~~~Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~ 129 (248)
..+.+=..|-+-|..+..++|+ .++-.|..+|-.--.+++
T Consensus 309 -----eLe~vK~emeerg~~mtD~sPl----v~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 309 -----ELEQVKQEMEERGSSMTDGSPL----VKIKQALTKLKQEIKQMD 348 (359)
T ss_pred -----HHHHHHHHHHHhcCCCCCCCHH----HHHHHHHHHHHHHHHHhh
Confidence 1255566777777777777765 333344444444444443
No 177
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=23.19 E-value=7.9e+02 Score=24.86 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=9.9
Q ss_pred HHHHHHHhhHhhhhhhhHHHHHHH
Q psy14114 149 KTIVKERSLLESKRLDLDSCKNRV 172 (248)
Q Consensus 149 ~~i~~~rkkl~~~RLd~Daak~k~ 172 (248)
.++.+.+..++..+-.|...+.++
T Consensus 537 ~~~~~~~~e~~~~~~~l~~~~~~l 560 (782)
T PRK00409 537 EEAEALLKEAEKLKEELEEKKEKL 560 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 178
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=22.78 E-value=3.3e+02 Score=20.34 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=20.5
Q ss_pred HHHHHHHhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 90 LGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSA 132 (248)
Q Consensus 90 Lg~~m~~~~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~ 132 (248)
|-.+|.+.-..+.+++.+.....++.+...+|++.+.++....
T Consensus 48 Le~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~ 90 (115)
T PF06476_consen 48 LEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQ 90 (115)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333433333444444454455555555555555555554443
No 179
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=21.51 E-value=3.6e+02 Score=20.35 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhHhhhhhhhHHHHHHH
Q psy14114 147 EMKTIVKERSLLESKRLDLDSCKNRV 172 (248)
Q Consensus 147 ~~~~i~~~rkkl~~~RLd~Daak~k~ 172 (248)
+++.+...|..+...+......++..
T Consensus 57 ~~~~L~~lr~e~~~~~~~~~~l~~~~ 82 (132)
T PF07926_consen 57 DIKELQQLREELQELQQEINELKAEA 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 180
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=21.42 E-value=8.5e+02 Score=24.59 Aligned_cols=6 Identities=17% Similarity=0.418 Sum_probs=2.7
Q ss_pred CcHHHH
Q psy14114 105 TTYGTA 110 (248)
Q Consensus 105 s~~g~a 110 (248)
++||-.
T Consensus 482 ~S~a~~ 487 (771)
T TIGR01069 482 ESYAFE 487 (771)
T ss_pred CcHHHH
Confidence 445443
No 181
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=21.29 E-value=4.4e+02 Score=21.26 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=31.3
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHhhccccccccchHHHHHH
Q psy14114 113 KVG-QYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRI 191 (248)
Q Consensus 113 ~~g-~a~~~ia~~~~~~~~~~~~~~l~pL~~~l~~~~~~i~~~rkkl~~~RLd~Daak~k~~kak~~~~~~~~~e~el~~ 191 (248)
.|+ .++.+|......+...+... ++-++.+|+++.+....+++.-...-..|+|..- ++.+|+.
T Consensus 98 ncs~QVqqeL~~tf~rL~~~Vd~~-----~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~----------L~~eL~~ 162 (171)
T PF04799_consen 98 NCSHQVQQELSSTFARLCQQVDQT-----KNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANW----------LESELER 162 (171)
T ss_dssp ------------HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
Confidence 344 45566666666666655443 4455556666666666666554444433333221 5566666
Q ss_pred HHHHH
Q psy14114 192 AQSEF 196 (248)
Q Consensus 192 a~~~f 196 (248)
-+..|
T Consensus 163 F~~~y 167 (171)
T PF04799_consen 163 FQEQY 167 (171)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
No 182
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=21.26 E-value=1.1e+02 Score=20.70 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q psy14114 32 DAHFESLAGRSDVTKLWTEKIVG 54 (248)
Q Consensus 32 ~~e~~~lE~~~d~~k~~~~~l~k 54 (248)
|+||.++.+|+|.+..-.+....
T Consensus 11 ~~~~~~i~~rLd~iEeKvEf~~~ 33 (70)
T PF04210_consen 11 PDDFNEIMKRLDEIEEKVEFTNA 33 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 89999999999999887665544
No 183
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=21.23 E-value=7.4e+02 Score=23.77 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=17.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 104 GTTYGTALIKVGQYEQKLGAAEREFVNSAHV 134 (248)
Q Consensus 104 ~s~~g~aL~~~g~a~~~ia~~~~~~~~~~~~ 134 (248)
+..++.....+..++..+.++..++......
T Consensus 265 d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~ 295 (563)
T TIGR00634 265 DGSLRELAEQVGNALTEVEEATRELQNYLDE 295 (563)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555666666666655555554443
No 184
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=20.89 E-value=4.9e+02 Score=22.72 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=28.0
Q ss_pred HHHhhhhccchhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14114 206 LLEGVQTSHTSHLRCL-----HEFVEAQVNYYANCHKIMQDLKNELS 247 (248)
Q Consensus 206 ~m~~i~~~e~e~~~~L-----~~lv~aQ~~y~~~~~~~L~~l~~~l~ 247 (248)
.+..++.+....+..| .+.+..+..||+...++|..+...++
T Consensus 101 hLe~VLk~K~~Lr~RLqkP~~qe~LPVEA~yHr~vVeLL~laa~fi~ 147 (277)
T PF15003_consen 101 HLEAVLKEKDRLRQRLQKPYCQENLPVEAQYHRYVVELLELAASFIE 147 (277)
T ss_pred HHHHHHHhHHHHHHHHHhhhhhcCccchhhhhHHHHHHHHHHHHHHH
Confidence 3444444434444443 56788899999999999987776654
No 185
>KOG0972|consensus
Probab=20.85 E-value=6e+02 Score=22.57 Aligned_cols=100 Identities=19% Similarity=0.250 Sum_probs=46.2
Q ss_pred HHhhhhcCcccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhHHHHHHhhhcCCCCCCchhHHHHHHHHh
Q psy14114 18 LTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEA 97 (248)
Q Consensus 18 ~~~Ek~G~~ekTel~~e~~~lE~~~d~~k~~~~~l~k~~~~yl~~np~~r~~~~~~~k~~~~~~~~~~~~~~Lg~~m~~~ 97 (248)
++-||+.+.||+ +..++..|-+++.. +...+-..-..|-+.+-+........+.+ +...+.+-+.|.+-
T Consensus 259 ~~LEkI~SREK~-lNnqL~~l~q~fr~---a~~~lse~~e~y~q~~~gv~~rT~~L~eV-------m~e~E~~KqemEe~ 327 (384)
T KOG0972|consen 259 KALEKIASREKS-LNNQLASLMQKFRR---ATDTLSELREKYKQASVGVSSRTETLDEV-------MDEIEQLKQEMEEQ 327 (384)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 344666666664 55555555444433 33333333344544432221110000000 01235666777777
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14114 98 GNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSA 132 (248)
Q Consensus 98 ~~~~~~~s~~g~aL~~~g~a~~~ia~~~~~~~~~~ 132 (248)
|..+.+++|+ .++-.+..++-+--.+++-.|
T Consensus 328 G~~msDGapl----vkIkqavsKLk~et~~mnv~i 358 (384)
T KOG0972|consen 328 GAKMSDGAPL----VKIKQAVSKLKEETQTMNVQI 358 (384)
T ss_pred cccccCCchH----HHHHHHHHHHHHHHHhhhhhe
Confidence 7766665554 444444445544444444433
Done!