RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14114
(248 letters)
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A
{Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A
2c08_A
Length = 256
Score = 181 bits (459), Expect = 7e-57
Identities = 60/243 (24%), Positives = 101/243 (41%), Gaps = 14/243 (5%)
Query: 11 ALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVED 70
+ Q EK+G +E T+LD F+ + + DVT +I+ T L PNP +R +
Sbjct: 9 QFHKATQKVSEKVGGAEGTKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKL 68
Query: 71 FLFEKIEK-----KRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAE 125
+ + K K P L M + G G +G AL +VG+ ++L +
Sbjct: 69 SMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVK 128
Query: 126 REFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNA 185
+F+ PLQ + +++ I LE +RLD K R K
Sbjct: 129 DSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQGKI---------P 179
Query: 186 ERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNE 245
+ +LR A +FD EI + + + + L V+AQ+ Y+ +I+Q +
Sbjct: 180 DEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVR 239
Query: 246 LSK 248
L +
Sbjct: 240 LEE 242
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative
splicing, coiled coil, SH3 domain, endocytosis,
structural genomics, NPPSFA; 2.49A {Homo sapiens}
Length = 240
Score = 171 bits (435), Expect = 2e-53
Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 14/231 (6%)
Query: 21 EKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEK-- 78
+E T+LD F + + DVT +I+ T L PNP R + + + K
Sbjct: 3 SGSSGAEGTKLDDEFLDMERKIDVTNKVVAEILSKTTEYLQPNPAYRAKLGMLNTVSKIR 62
Query: 79 ---KRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVS 135
K LG M + G G +T+G ALI+VG+ + + + + +
Sbjct: 63 GQVKTTGYPQTEGLLGDCMLKYGKELGEDSTFGNALIEVGESMKLMAEVKDSLDINVKQT 122
Query: 136 FVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAERDLRIAQSE 195
F+ PLQ + ++K I LE +RLD D K RV K + ++R A +
Sbjct: 123 FIDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVGKI---------PDEEVRQAVEK 173
Query: 196 FDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKNEL 246
F+ E+ + + + + L F+EA ++Y+ +I+Q+L+++L
Sbjct: 174 FEESKELAERSMFNFLENDVEQVSQLAVFIEAALDYHRQSTEILQELQSKL 224
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes,
curvature membrane, structural genomics consortium;
1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Length = 243
Score = 78.3 bits (192), Expect = 1e-17
Identities = 34/252 (13%), Positives = 80/252 (31%), Gaps = 30/252 (11%)
Query: 2 KQFVKDAGSALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLT 61
F K+ L+R + +KLG +++T+ D FE + ++ +
Sbjct: 8 GIFAKNVQKRLNRAQEKVLQKLGKADETK-DEQFEEYVQNFKRQEAEGTRLQREL----- 61
Query: 62 PNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKL 121
+ + + ++ + +TE+ + YG +K +K
Sbjct: 62 ----------------RGYLAAIKGMQEASMKLTESLHEVYEPDWYGREDVK--MVGEKC 103
Query: 122 GAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGT 181
+F + L +L + I + K +D DS ++ + +S
Sbjct: 104 DVLWEDFHQKLVDGSLLTLDTYLG-QFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRK 162
Query: 182 QSN----AERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCH 236
+ AE + + AQ F+ + L + + + ++
Sbjct: 163 DESRISKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEIA 222
Query: 237 KIMQDLKNELSK 248
+ L ++K
Sbjct: 223 VLCHKLYEVMTK 234
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils,
endocytosis/exocytosis, protein complex,
endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A
2rnd_A
Length = 251
Score = 77.2 bits (189), Expect = 4e-17
Identities = 34/253 (13%), Positives = 72/253 (28%), Gaps = 30/253 (11%)
Query: 1 MKQFVKDAGSALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVL 60
+ + L+R + +KLG +++T+ D FE + ++ D L
Sbjct: 21 AGKIASNVQKKLTRAQEKVLQKLGKADETK-DEQFEQCVQNFNKQLTEGTRLQKDLRTYL 79
Query: 61 TPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQK 120
+ L + E PG + +
Sbjct: 80 ASVKA-----------------MHEASKKLNECLQEVYEPDWPGRDEANKI------AEN 116
Query: 121 LGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLG 180
++ + + +L + I + K +D DS ++ ++
Sbjct: 117 NDLLWMDYHQKLVDQALLTMDTYLG-QFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKK 175
Query: 181 TQSN----AERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANC 235
AE +L AQ F+ + L + S + N++
Sbjct: 176 KDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEM 235
Query: 236 HKIMQDLKNELSK 248
K+ Q+L + L
Sbjct: 236 SKLNQNLNDVLVG 248
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A
{Drosophila melanogaster} SCOP: a.238.1.1
Length = 244
Score = 76.8 bits (188), Expect = 5e-17
Identities = 25/257 (9%), Positives = 70/257 (27%), Gaps = 38/257 (14%)
Query: 2 KQFVKDAGSALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLT 61
K R + + LG ++T D F+ + + ++ +
Sbjct: 7 IMLAKSVQKHAGRAKEKILQNLGKVDRTA-DEIFDDHLNNFNRQQASANRLQKEF----- 60
Query: 62 PNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKL 121
+ + + + L + E G +
Sbjct: 61 ------------NNYIRCVRAAQAASKTLMDSVCEIYEPQWSGYDA------LQAQTGAS 102
Query: 122 GAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGT 181
+ +F + + PL + + + K+ K +D D ++ + ++
Sbjct: 103 ESLWADFAHKLGDQVLIPLNTYTG-QFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANK 161
Query: 182 QSN------AERDLRIAQSEFDRQAEITKLLLEG----VQTSHTSHLRCLHEFVEAQVNY 231
+ + L A+ ++ + L + + + L + +
Sbjct: 162 RKDDVKLTKGREQLEEARRTYE---ILNTELHDELPALYDSRILFLVTNLQTLFATEQVF 218
Query: 232 YANCHKIMQDLKNELSK 248
+ KI +L+ + K
Sbjct: 219 HNETAKIYSELEAIVDK 235
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR
adaptor; 1.91A {Homo sapiens}
Length = 237
Score = 60.2 bits (145), Expect = 3e-11
Identities = 37/256 (14%), Positives = 83/256 (32%), Gaps = 36/256 (14%)
Query: 1 MKQFVKDAGSALSRVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVL 60
M F K SR + +KLG + +T+ D FE A + K+ D
Sbjct: 2 MGLFAKQVQKKFSRAQEKVLQKLGKAVETK-DERFEQSASNFYQQQAEGHKLYKD----- 55
Query: 61 TPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQK 120
+ + + + + E ++ G A++
Sbjct: 56 ------------LKNFLSAVKVMHESSKRVSETLQEIYSSEWDGHEELKAIVW------N 97
Query: 121 LGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLG 180
++ V+ ++ ++ + I + + K +D DS ++ + ++
Sbjct: 98 NDLLWEDYEEKLADQAVRTMEIYVA-QFSEIKERIAKRGRKLVDYDSARHHLEAVQNAKK 156
Query: 181 TQSN----AERDLRIAQSEFDRQAEITKLLLEG----VQTSHTSHLRCLHEFVEAQVNYY 232
AE + AQ+ F+ ++ + LLE + ++ + +Y
Sbjct: 157 KDEAKTAKAEEEFNKAQTVFE---DLNQELLEELPILYNSRIGCYVTIFQNISNLRDVFY 213
Query: 233 ANCHKIMQDLKNELSK 248
K+ +L +SK
Sbjct: 214 REMSKLNHNLYEVMSK 229
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain,
protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Length = 265
Score = 48.0 bits (113), Expect = 8e-07
Identities = 22/158 (13%), Positives = 58/158 (36%), Gaps = 4/158 (2%)
Query: 88 EYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGE 147
+ L + G + L + + +L + + + P+ +F E +
Sbjct: 63 KLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERD 122
Query: 148 MKTIVKERSLLESKRLDLDSCKNR---VRKARSLLGTQSNAERDLRIAQSEFDRQAEITK 204
+K I+ + + + D D+ NR + K R + D+ ++ + +
Sbjct: 123 LKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYF 182
Query: 205 LLLEGVQTSHTSH-LRCLHEFVEAQVNYYANCHKIMQD 241
L +Q L L +++AQ++++ + + +
Sbjct: 183 CALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNE 220
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 1e-06
Identities = 39/274 (14%), Positives = 89/274 (32%), Gaps = 65/274 (23%)
Query: 2 KQFVKDAGSALSRVVQLTEEKLGTSEKTELDAHFESLAG-RSDV-------TKLWTEKIV 53
+ L+ +++ + L E E F+ L+ + +W + I
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVL---EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 54 GDTAAVLTPNPGNRVEDF-LFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALI 112
D V+ N++ + L EK K+ + ++ YL L + AL
Sbjct: 402 SDVMVVV-----NKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEY---------ALH 446
Query: 113 K--VGQYEQKLGAAEREFVNSA-----------HVSFVQPLQKFLEGEMKTIVKERSLLE 159
+ V Y + + H+ ++ ++ +L
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM------------TLFR 494
Query: 160 SKRLDLDSCKNRVRK---ARSLLGTQSNAERDLR-----IAQSEFDRQAEITKLL--LEG 209
LD + ++R A + G+ N + L+ I ++ + + +L L
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 210 VQTS--HTSHLRCLHEFVEAQVN-YYANCHKIMQ 240
++ + + + L + A+ + HK +Q
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 45.2 bits (106), Expect = 1e-05
Identities = 34/293 (11%), Positives = 85/293 (29%), Gaps = 94/293 (32%)
Query: 2 KQFVKDAGSALSR-----VVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDT 56
++FV++ L + + E+ S T + + +L+
Sbjct: 80 QKFVEEV---LRINYKFLMSPIKTEQRQPSMMTRM---YIE-----QRDRLYN------D 122
Query: 57 AAVLTPNPGNRVEDFLFEKIEKKRPSRLSNL---EYLGLD-MTEAG-------------- 98
V +R++ + K+ + L L + + +D + +G
Sbjct: 123 NQVFAKYNVSRLQ--PYLKLRQA----LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 99 -NAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSL 157
+ + + + ++ LQK L
Sbjct: 177 QCKMDFKIFW----LNLKNCNS-------------PETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 158 LESKRLDLDSCKNRVRKARSLLGTQSNAE--------RDLRIAQSEFD---------RQA 200
+ +L + S + +R+ LL ++ ++ + + F+ R
Sbjct: 220 SSNIKLRIHSIQAELRR---LLKSKPYENCLLVLLNVQNAKAWNA-FNLSCKILLTTRFK 275
Query: 201 EITKLLLEGVQTSHTSHLRCLHE---FVEAQV-NYYANC-HKIMQDLKNELSK 248
++T + + + T+H+ H +V + QDL E+
Sbjct: 276 QVT----DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Score = 32.5 bits (73), Expect = 0.13
Identities = 35/205 (17%), Positives = 76/205 (37%), Gaps = 47/205 (22%)
Query: 68 VEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAERE 127
V++F + ++ S LS E + + +A GT + K ++
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEI--DHIIMSKDA-----VSGTLRL-FWTLLSKQEEMVQK 81
Query: 128 FVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNAER 187
FV + KFL +KT ++ S++ ++R+ + + N R
Sbjct: 82 FVEEVL----RINYKFLMSPIKTEQRQPSMMTRM---YIEQRDRLYNDNQVF-AKYNVSR 133
Query: 188 -----DLRIAQSEFDRQAEITKLLLEG----------VQTSHTSHLRCLHEFVEAQVNYY 232
LR A E R A+ +L++G + + ++C +F ++ ++
Sbjct: 134 LQPYLKLRQALLE-LRPAK--NVLIDGVLGSGKTWVALDVCLSYKVQCKMDF---KI-FW 186
Query: 233 ---ANCH------KIMQDLKNELSK 248
NC+ +++Q L ++
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDP 211
Score = 27.5 bits (60), Expect = 5.1
Identities = 26/239 (10%), Positives = 59/239 (24%), Gaps = 79/239 (33%)
Query: 43 DVTKLWTEKIVGDTAA--------VLTPNPGNRVEDFLFEKIEKKRPSRLSNLEYLGLDM 94
+V K A + T V DFL + + L
Sbjct: 252 NV---QNAKAW---NAFNLSCKILLTTRFKQ--VTDFLSAATTTHISL---DHHSMTLTP 300
Query: 95 TEAGNAFGPGTTYGTALIKVGQYEQKL---------------GAAEREFV----NSAHVS 135
E + + Q L + R+ + N HV+
Sbjct: 301 DEVKSLL--------LKY-LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 136 ---FVQPLQKFLE----GEMK------TIVKERSLLESKRLDLDSCKNRVRKARSLLGTQ 182
++ L E + ++ + + + L SL+
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL-------------SLIWFD 398
Query: 183 SNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQD 241
+ + + + L+E T + ++ ++ ++ H+ + D
Sbjct: 399 VIKSDVMVVVN-KLHK-----YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 42.3 bits (98), Expect = 7e-05
Identities = 20/139 (14%), Positives = 54/139 (38%), Gaps = 4/139 (2%)
Query: 107 YGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLD 166
+ L + + +L + + + P+ +F E ++K I+ + + + D D
Sbjct: 82 MSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHD 141
Query: 167 SCKNR---VRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSH-LRCLH 222
+ NR + K R + D+ ++ + + L +Q L L
Sbjct: 142 AAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLL 201
Query: 223 EFVEAQVNYYANCHKIMQD 241
+++AQ++++ + + +
Sbjct: 202 GYMQAQISFFKMGSENLNE 220
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.003
Identities = 33/193 (17%), Positives = 66/193 (34%), Gaps = 54/193 (27%)
Query: 81 PSRLSNLE----YLGL--DMTEAGNAFGPGTTYGTALIKVGQYEQKLGAA----EREFV- 129
P+ + E +LG + E GQ++Q L E ++
Sbjct: 54 PT--TPAELVGKFLGYVSSLVEPSKV--------------GQFDQVLNLCLTEFENCYLE 97
Query: 130 -NSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNR--VRKARSLLGTQSNAE 186
N H + L L+ T+VK + L+++ + R +K+ S L ++ E
Sbjct: 98 GNDIH-ALAAKL---LQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSAL-FRAVGE 151
Query: 187 RDLRIA-----Q--SE--FDRQAEITKL------LLEGVQTSHTSHLRCLHEFVEAQVNY 231
+ ++ Q ++ F+ E+ L L+ + L L
Sbjct: 152 GNAQLVAIFGGQGNTDDYFE---ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 232 YANCHKIMQDLKN 244
+ I++ L+N
Sbjct: 209 FTQGLNILEWLEN 221
Score = 30.4 bits (68), Expect = 0.70
Identities = 21/117 (17%), Positives = 34/117 (29%), Gaps = 37/117 (31%)
Query: 12 LSRVVQLTEEKLGTSEKTELDAHFESLA--------GRSDVTKLWTEKIVGDTAAVLTPN 63
L L + L K + + + + G SD+ L + I +
Sbjct: 432 LVPASDLINKDL---VKNNVSFNAKDIQIPVYDTFDG-SDLRVL-SGSISERIVDCIIRL 486
Query: 64 PGNRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYG----TALIKVGQ 116
P +E + + + + LD FGPG G T K G
Sbjct: 487 PVK------WETTTQFKATHI-------LD-------FGPGGASGLGVLTHRNKDGT 523
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain,
phosphoprotein, protein transport, SH3 domain,
transport, transport protein; 2.08A {Homo sapiens} PDB:
3dyu_A 2raj_A 2rai_A 2rak_A*
Length = 366
Score = 35.9 bits (82), Expect = 0.008
Identities = 17/191 (8%), Positives = 54/191 (28%), Gaps = 18/191 (9%)
Query: 66 NRVEDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPG-----TTYGTALIKVGQYEQK 120
+ E ++ + +G + F T A+ + G+ ++
Sbjct: 185 KELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEE 244
Query: 121 LGAAEREFVNSAHVSFVQPLQKFLE--GEMKTIVKERSLLESKRLDLDSCKNRVRKARSL 178
+ + E ++ ++ G I+ K +++ L
Sbjct: 245 IASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKV----------KESDKL 294
Query: 179 LGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHK 237
+ T +D + + + + ++ + ++E QV +Y +
Sbjct: 295 VATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAE 354
Query: 238 IMQDLKNELSK 248
++ +
Sbjct: 355 KLRQALSRFPV 365
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A
{Homo sapiens}
Length = 386
Score = 30.9 bits (69), Expect = 0.40
Identities = 12/184 (6%), Positives = 52/184 (28%), Gaps = 15/184 (8%)
Query: 72 LFEKIEKKRPSRLS-NLEYLGLDMTEAGNAFG-----PGTTYGTALIKVGQYEQKLGAAE 125
+ ++ +K + LG ++F +A+ G+ + +G
Sbjct: 210 VASELVRKHVGGFRKEFQKLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTYEAIGEMF 269
Query: 126 REFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSNA 185
E + + L + + ++ ++ +V++++ +
Sbjct: 270 AEQPKNDLFQMLDTLSLYQ----GLLSNFPDIIHLQK----GAFAKVKESQRMSDEGRMV 321
Query: 186 ERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDLKN 244
+ + + + + + + ++ Q+ +Y + ++
Sbjct: 322 QDEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQRVGQQLEKTLR 381
Query: 245 ELSK 248
Sbjct: 382 MYDN 385
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2,
protein structure initiative; 2.05A {Bordetella
parapertussis}
Length = 333
Score = 28.1 bits (63), Expect = 2.4
Identities = 3/38 (7%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 72 LFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGT 109
++++ + +L + G Y +
Sbjct: 78 KLAQVDE---KSVPSLADVPEKFKADWEGCGSLYDYSS 112
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl
transfer, transferase; 2.00A {Streptomyces tendae} PDB:
3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*
Length = 357
Score = 27.6 bits (62), Expect = 4.5
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 100 AFGPGTTYGTALIKVGQ 116
G G T A++++ +
Sbjct: 324 GGGAGYTCTAAVVEILR 340
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics,
PSI, protein structure initiative; 2.00A {Deinococcus
radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Length = 211
Score = 27.0 bits (60), Expect = 4.8
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 175 ARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSH 217
A Q E D + + RQ E+T LLEG H H
Sbjct: 169 ASVTANGQPLLENDRASIRHQVRRQVELTAKLLEGGSHHHHHH 211
>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS,
bacterial, thiolase fold, beta-alpha-beta-alpha fold,
catalytic triad; HET: 15P; 2.22A {Streptomyces
coelicolor} SCOP: c.95.1.2 c.95.1.2
Length = 382
Score = 26.5 bits (59), Expect = 7.8
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 100 AFGPGTTYGTALIKVGQYEQKLGA-AEREFVNSAHVS 135
FGPG T +L + + G + + VS
Sbjct: 340 GFGPGITAEMSLGCWQTADVRRGIRQDVTRTAARGVS 376
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET:
MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2
PDB: 1tee_A
Length = 393
Score = 26.6 bits (59), Expect = 9.1
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 100 AFGPGTTYGTALIK 113
AFGPG T L
Sbjct: 376 AFGPGVTVEGMLFD 389
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.358
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,509,931
Number of extensions: 200341
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 27
Length of query: 248
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 157
Effective length of database: 4,160,982
Effective search space: 653274174
Effective search space used: 653274174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.9 bits)