RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14114
(248 letters)
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 237
Score = 139 bits (352), Expect = 2e-41
Identities = 61/242 (25%), Positives = 101/242 (41%), Gaps = 18/242 (7%)
Query: 14 RVVQLTEEKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLF 73
+ Q EK+G +E T+LD F+ + + DVT +I+ T L PNP +R + +
Sbjct: 2 KATQKVSEKVGGAEGTKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMI 61
Query: 74 EKIEK-----KRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREF 128
+ K K P L M + G G +G AL +VG+ ++L +
Sbjct: 62 NTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSL 121
Query: 129 VNSAHVSFVQPLQKFLEGEMKTIVKE----RSLLESKRLDLDSCKNRVRKARSLLGTQSN 184
+F+ PLQ + +++ I LE +RLD D K R K
Sbjct: 122 DIEVKQNFIDPLQNLHDKDLREIQSALQHHLKKLEGRRLDFDYKKKRQGKI--------- 172
Query: 185 AERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHKIMQDLKN 244
+ +LR A +FD EI + + + + L V+AQ+ Y+ +I+Q +
Sbjct: 173 PDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTV 232
Query: 245 EL 246
L
Sbjct: 233 RL 234
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 217
Score = 73.6 bits (180), Expect = 2e-16
Identities = 26/235 (11%), Positives = 66/235 (28%), Gaps = 32/235 (13%)
Query: 21 EKLGTSEKTELDAHFESLAGRSDVTKLWTEKIVGDTAAVLTPNPGNRVEDFLFEKIEKKR 80
+ LG ++T D F+ + + ++ + + V
Sbjct: 1 QNLGKVDRTA-DEIFDDHLNNFNRQQASANRLQKEFNNYI-----RCVRAAQ-------- 46
Query: 81 PSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPL 140
+ + L + E G + + +F + + PL
Sbjct: 47 ----AASKTLMDSVCEIYEPQWSGYDA------LQAQTGASESLWADFAHKLGDQVLIPL 96
Query: 141 QKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSN------AERDLRIAQS 194
+ + + K+ K +D D ++ + ++ + + L A+
Sbjct: 97 NTYTG-QFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARR 155
Query: 195 EFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQDLKNELSK 248
++ L + S L L + ++ KI +L+ + K
Sbjct: 156 TYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDK 210
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 268
Score = 57.8 bits (139), Expect = 1e-10
Identities = 22/154 (14%), Positives = 58/154 (37%), Gaps = 4/154 (2%)
Query: 96 EAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKER 155
+ G + L + + +L + + + P+ +F E ++K I+ +
Sbjct: 66 QRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLK 125
Query: 156 SLLESKRLDLDSCKNR---VRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQT 212
+ + D D+ NR + K R + D+ ++ + + L +Q
Sbjct: 126 EVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQY 185
Query: 213 SH-TSHLRCLHEFVEAQVNYYANCHKIMQDLKNE 245
+ L L +++AQ++++ + + + E
Sbjct: 186 KKKIALLEPLLGYMQAQISFFKMGSENLNEQLEE 219
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 55.4 bits (133), Expect = 6e-10
Identities = 18/157 (11%), Positives = 59/157 (37%), Gaps = 15/157 (9%)
Query: 107 YGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLD 166
G L ++ + +++ E + S H + L++ +E + + + ++++
Sbjct: 72 LGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQTEQRSKG 131
Query: 167 S--------CKNRVRKARSLLGTQSNAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHL 218
K +K++ Q ++++L+ + ++Q E+ + +G +T+ T
Sbjct: 132 DALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEER 191
Query: 219 R-------CLHEFVEAQVNYYANCHKIMQDLKNELSK 248
R + Y++ +++ +
Sbjct: 192 RRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPLWQQ 228
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo
sapiens) [TaxId: 9606]}
Length = 200
Score = 53.6 bits (128), Expect = 2e-09
Identities = 23/175 (13%), Positives = 58/175 (33%), Gaps = 7/175 (4%)
Query: 73 FEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSA 132
++ + + L +L + +A + QKL E + A
Sbjct: 25 VLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGA 84
Query: 133 HVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQSN------AE 186
FV + + M+ + E+ RL+ D+ + + + A+
Sbjct: 85 VNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQ 144
Query: 187 RDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLR-CLHEFVEAQVNYYANCHKIMQ 240
+ + ++++ + L+ ++ + + L F A Y+A K ++
Sbjct: 145 ATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLE 199
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 32.9 bits (74), Expect = 0.031
Identities = 18/174 (10%), Positives = 50/174 (28%), Gaps = 5/174 (2%)
Query: 66 NRVEDFLFEK--IEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGA 123
+ F+ E+ IE +L NL + T A I
Sbjct: 26 EKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMNDYAG 85
Query: 124 AEREFVNSAHVSFVQPLQKFLEGEMKTIVKERSLLESKRLDLDSCKNRVRKARSLLGTQS 183
+ + L ++++ + + +++C ++ ++
Sbjct: 86 QHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRF---E 142
Query: 184 NAERDLRIAQSEFDRQAEITKLLLEGVQTSHTSHLRCLHEFVEAQVNYYANCHK 237
++ AQ F++ + V+ + +++ +Y + K
Sbjct: 143 RDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQK 196
>d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 148
Score = 28.1 bits (62), Expect = 0.64
Identities = 3/15 (20%), Positives = 9/15 (60%)
Query: 100 AFGPGTTYGTALIKV 114
+G G +Y ++++
Sbjct: 134 GYGAGLSYAAQVVRM 148
>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli
[TaxId: 562]}
Length = 391
Score = 28.0 bits (61), Expect = 1.2
Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Query: 88 EYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGE 147
+ +G D E F G T L G + + V + LE E
Sbjct: 59 DLVGADPREI--VFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLERE 116
Query: 148 MKTIVKERSLLESKRLDLDSCKNRVRKARSLL 179
V + + +DL + +R L+
Sbjct: 117 -GFEVTYLAPQRNGIIDLKELEAAMRDDTILV 147
>d1bi5a2 c.95.1.2 (A:236-389) Chalcone synthase {Alfalfa (Medicago
sativa) [TaxId: 3879]}
Length = 154
Score = 27.2 bits (60), Expect = 1.4
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 69 EDFLFEKIEKKRPSRLSNLEYLGLDMTEAGNAFGPGTTYGTALIK 113
++ + + + LE+ L FGPG T T +++
Sbjct: 112 DEMRKKSTQNGLKTTGEGLEWGVLF------GFGPGLTIETVVLR 150
>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase
{Thermotoga maritima [TaxId: 2336]}
Length = 376
Score = 27.7 bits (60), Expect = 1.4
Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 3/92 (3%)
Query: 88 EYLGLDMTEAGNAFGPGTTYGTALIKVGQYEQKLGAAEREFVNSAHVSFVQPLQKFLEGE 147
+ LG+ +E F T I E V K+L +
Sbjct: 55 KVLGVSPSEI--FFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMK 112
Query: 148 MKTIVKERSLLESKRLDLDSCKNRVRKARSLL 179
VK + + L+ + V + L+
Sbjct: 113 GFK-VKYVPVDSRGVVKLEELEKLVDEDTFLV 143
>d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH)
{Thermus thermophilus [TaxId: 274]}
Length = 149
Score = 26.7 bits (58), Expect = 1.7
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 100 AFGPGTTYGTALIKVG 115
+FG G T+ A++ G
Sbjct: 132 SFGAGLTWAAAVLTWG 147
>d1ee0a2 c.95.1.2 (A:236-395) Pyrone synthase (PyS, chalcone
synthase 2) {Gerbera hybrid cultivar [TaxId: 18101]}
Length = 160
Score = 26.9 bits (59), Expect = 1.7
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 100 AFGPGTTYGTALIK 113
FGPG T T +++
Sbjct: 142 GFGPGMTVETVVLR 155
>d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206
{Streptomyces coelicolor [TaxId: 1902]}
Length = 148
Score = 26.5 bits (58), Expect = 2.2
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 100 AFGPGTTYGTALIK 113
FGPG T +L
Sbjct: 131 GFGPGITAEMSLGC 144
>d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH)
{Escherichia coli [TaxId: 562]}
Length = 143
Score = 26.0 bits (56), Expect = 2.8
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 100 AFGPGTTYGTALIK 113
AFG G T+G+AL++
Sbjct: 129 AFGGGFTWGSALVR 142
>d1u0ua2 c.95.1.2 (A:238-393) Dihydropinosylvin synthase {Scots pine
(Pinus sylvestris) [TaxId: 3349]}
Length = 156
Score = 26.1 bits (57), Expect = 3.0
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 100 AFGPGTTYGTALIK 113
FGPG T T ++K
Sbjct: 138 GFGPGLTIETVVLK 151
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.358
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 827,078
Number of extensions: 35154
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 16
Length of query: 248
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,268,006
Effective search space: 209220990
Effective search space used: 209220990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.3 bits)