BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14115
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NQZ|A Chain A, Trna-Guanine Transglycosylase (Tgt) Mutant In Complex With
7-Deaza-7- Aminomethyl-Guanine
Length = 385
Score = 167 bits (423), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 126/211 (59%), Gaps = 5/211 (2%)
Query: 2 RVAIAKDRTVRWLDRCLAA--HRNPTTQN--IFPIVQGGLDEALRKDCAHQMVEKDVNGF 57
R A + +R++RW R A R +N +F I QG + E LR+ A + E +G+
Sbjct: 166 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGY 225
Query: 58 AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117
AVGGLSGGE +++ + + S+ LP DKP Y+MG+G D++ G DMFDCV PTR
Sbjct: 226 AVGGLSGGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTR 285
Query: 118 TARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLL 176
+ R G A G + ++ ++ D P+D++C C+ C +++RAY+HH I E L+
Sbjct: 286 SGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLM 345
Query: 177 SVHNIAFQMRLMREIRESIKEQRFPQYVKQY 207
+ HNIAF +LM++IR+SI E RF Q+ + +
Sbjct: 346 TEHNIAFYQQLMQKIRDSISEGRFSQFAQDF 376
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS 316
G + + K GGLH FMGW R +LTDSGGFQ++SL + +EEGV F+S
Sbjct: 78 GAERIAKLGGLHSFMGWDRPILTDSGGFQVMSLSSLTKQSEEGVTFKS 125
>pdb|2NSO|A Chain A, Trna-Gunanine-Transglycosylase (Tgt) Mutant Y106f, C158v,
A232s, V233g- Apo-Structure
pdb|3BLL|A Chain A, Tgt Mutant In Complex With Boc-Preq1
pdb|3BLO|A Chain A, Tgt Mutant In Complex With Queuine
Length = 386
Score = 167 bits (423), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 126/211 (59%), Gaps = 5/211 (2%)
Query: 2 RVAIAKDRTVRWLDRCLAA--HRNPTTQN--IFPIVQGGLDEALRKDCAHQMVEKDVNGF 57
R A + +R++RW R A R +N +F I QG + E LR+ A + E +G+
Sbjct: 167 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGY 226
Query: 58 AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117
AVGGLSGGE +++ + + S+ LP DKP Y+MG+G D++ G DMFDCV PTR
Sbjct: 227 AVGGLSGGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTR 286
Query: 118 TARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLL 176
+ R G A G + ++ ++ D P+D++C C+ C +++RAY+HH I E L+
Sbjct: 287 SGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLM 346
Query: 177 SVHNIAFQMRLMREIRESIKEQRFPQYVKQY 207
+ HNIAF +LM++IR+SI E RF Q+ + +
Sbjct: 347 TEHNIAFYQQLMQKIRDSISEGRFSQFAQDF 377
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS 316
G + + K GGLH FMGW R +LTDSGGFQ++SL + +EEGV F+S
Sbjct: 79 GAERIAKLGGLHSFMGWDRPILTDSGGFQVMSLSSLTKQSEEGVTFKS 126
>pdb|4HQV|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant
In Complex With Queuine
Length = 385
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 126/211 (59%), Gaps = 5/211 (2%)
Query: 2 RVAIAKDRTVRWLDRCLAA--HRNPTTQN--IFPIVQGGLDEALRKDCAHQMVEKDVNGF 57
R A + +R++RW R A R +N +F I QG + E LR+ A + E +G+
Sbjct: 166 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGY 225
Query: 58 AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117
AVGGL+GGE +++ + + S+ LP DKP Y+MG+G D++ G DMFDCV PTR
Sbjct: 226 AVGGLAGGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTR 285
Query: 118 TARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLL 176
+ R G A G + ++ ++ D P+D++C C+ C +++RAY+HH I E L+
Sbjct: 286 SGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLM 345
Query: 177 SVHNIAFQMRLMREIRESIKEQRFPQYVKQY 207
+ HNIAF +LM++IR+SI E RF Q+ + +
Sbjct: 346 TEHNIAFYQQLMQKIRDSISEGRFSQFAQDF 376
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS 316
G + + K GGLH FMGW R +LTDSGGFQ++SL + +EEGV F+S
Sbjct: 78 GAERIAKLGGLHSFMGWDRPILTDSGGFQVMSLSSLTKQSEEGVTFKS 125
>pdb|4GCX|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant
In Complex With Preq1
pdb|4H6E|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant
Apo Structure
Length = 386
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 126/211 (59%), Gaps = 5/211 (2%)
Query: 2 RVAIAKDRTVRWLDRCLAA--HRNPTTQN--IFPIVQGGLDEALRKDCAHQMVEKDVNGF 57
R A + +R++RW R A R +N +F I QG + E LR+ A + E +G+
Sbjct: 167 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGY 226
Query: 58 AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117
AVGGL+GGE +++ + + S+ LP DKP Y+MG+G D++ G DMFDCV PTR
Sbjct: 227 AVGGLAGGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTR 286
Query: 118 TARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLL 176
+ R G A G + ++ ++ D P+D++C C+ C +++RAY+HH I E L+
Sbjct: 287 SGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLM 346
Query: 177 SVHNIAFQMRLMREIRESIKEQRFPQYVKQY 207
+ HNIAF +LM++IR+SI E RF Q+ + +
Sbjct: 347 TEHNIAFYQQLMQKIRDSISEGRFSQFAQDF 377
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS 316
G + + K GGLH FMGW R +LTDSGGFQ++SL + +EEGV F+S
Sbjct: 79 GAERIAKLGGLHSFMGWDRPILTDSGGFQVMSLSSLTKQSEEGVTFKS 126
>pdb|4HSH|A Chain A, Trna-Guanine Transglycosylase Y106f, V233g Mutant In
Complex With Queuine
Length = 385
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 126/211 (59%), Gaps = 5/211 (2%)
Query: 2 RVAIAKDRTVRWLDRCLAA--HRNPTTQN--IFPIVQGGLDEALRKDCAHQMVEKDVNGF 57
R A + +R++RW R A R +N +F I QG + E LR+ A + E +G+
Sbjct: 166 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGY 225
Query: 58 AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117
AVGGL+GGE +++ + + S+ LP DKP Y+MG+G D++ G DMFDCV PTR
Sbjct: 226 AVGGLAGGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTR 285
Query: 118 TARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLL 176
+ R G A G + ++ ++ D P+D++C C+ C +++RAY+HH I E L+
Sbjct: 286 SGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLM 345
Query: 177 SVHNIAFQMRLMREIRESIKEQRFPQYVKQY 207
+ HNIAF +LM++IR+SI E RF Q+ + +
Sbjct: 346 TEHNIAFYQQLMQKIRDSISEGRFSQFAQDF 376
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS 316
G + + K GGLH FMGW R +LTDSGGFQ++SL + +EEGV F+S
Sbjct: 78 GAERIAKLGGLHSFMGWDRPILTDSGGFQVMSLSSLTKQSEEGVTFKS 125
>pdb|3BL3|A Chain A, Trna Guanine Transglycosylase V233g Mutant Apo Structure
pdb|3BLD|A Chain A, Trna Guanine Transglycosylase V233g Mutant Preq1 Complex
Structure
Length = 386
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 126/211 (59%), Gaps = 5/211 (2%)
Query: 2 RVAIAKDRTVRWLDRCLAA--HRNPTTQN--IFPIVQGGLDEALRKDCAHQMVEKDVNGF 57
R A + +R++RW R A R +N +F I QG + E LR+ A + E +G+
Sbjct: 167 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGY 226
Query: 58 AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117
AVGGL+GGE +++ + + S+ LP DKP Y+MG+G D++ G DMFDCV PTR
Sbjct: 227 AVGGLAGGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTR 286
Query: 118 TARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLL 176
+ R G A G + ++ ++ D P+D++C C+ C +++RAY+HH I E L+
Sbjct: 287 SGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLM 346
Query: 177 SVHNIAFQMRLMREIRESIKEQRFPQYVKQY 207
+ HNIAF +LM++IR+SI E RF Q+ + +
Sbjct: 347 TEHNIAFYQQLMQKIRDSISEGRFSQFAQDF 377
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS 316
G + + K GGLH FMGW R +LTDSGGFQ++SL + +EEGV F+S
Sbjct: 79 GAERIAKLGGLHSFMGWDRPILTDSGGFQVMSLSSLTKQSEEGVTFKS 126
>pdb|4GD0|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant
pdb|4H7Z|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant In
Complex With Guanine
pdb|4HVX|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant In
Complex With Queuine
Length = 386
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 125/211 (59%), Gaps = 5/211 (2%)
Query: 2 RVAIAKDRTVRWLDRCLAA--HRNPTTQN--IFPIVQGGLDEALRKDCAHQMVEKDVNGF 57
R A + +R++RW R A R +N +F I QG + E LR+ A + E +G+
Sbjct: 167 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGY 226
Query: 58 AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117
AVGGL+ GE +++ + + S+ LP DKP Y+MG+G D++ G DMFDCV PTR
Sbjct: 227 AVGGLAVGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTR 286
Query: 118 TARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLL 176
+ R G A G + ++ ++ D P+D++C C+ C +++RAY+HH I E L+
Sbjct: 287 SGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLM 346
Query: 177 SVHNIAFQMRLMREIRESIKEQRFPQYVKQY 207
+ HNIAF +LM++IR+SI E RF Q+ + +
Sbjct: 347 TEHNIAFYQQLMQKIRDSISEGRFSQFAQDF 377
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS 316
G + + K GGLH FMGW R +LTDSGGFQ++SL + +EEGV F+S
Sbjct: 79 GAERIAKLGGLHSFMGWDRPILTDSGGFQVMSLSSLTKQSEEGVTFKS 126
>pdb|1OZM|A Chain A, Y106f Mutant Of Z. Mobilis Tgt
pdb|1OZQ|A Chain A, Crystal Structure Of The Mutated Trna-Guanine
Transglycosylase (Tgt) Y106f Complexed With Preq1
Length = 386
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 125/211 (59%), Gaps = 5/211 (2%)
Query: 2 RVAIAKDRTVRWLDRCLAA--HRNPTTQN--IFPIVQGGLDEALRKDCAHQMVEKDVNGF 57
R A + +R++RW R A R +N +F I QG + E LR+ A + E +G+
Sbjct: 167 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGY 226
Query: 58 AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117
AVGGL+ GE +++ + + S+ LP DKP Y+MG+G D++ G DMFDCV PTR
Sbjct: 227 AVGGLAVGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTR 286
Query: 118 TARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLL 176
+ R G A G + ++ ++ D P+D++C C+ C +++RAY+HH I E L+
Sbjct: 287 SGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLM 346
Query: 177 SVHNIAFQMRLMREIRESIKEQRFPQYVKQY 207
+ HNIAF +LM++IR+SI E RF Q+ + +
Sbjct: 347 TEHNIAFYQQLMQKIRDSISEGRFSQFAQDF 377
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS 316
G + + K GGLH FMGW R +LTDSGGFQ++SL + +EEGV F+S
Sbjct: 79 GAERIAKLGGLHSFMGWDRPILTDSGGFQVMSLSSLTKQSEEGVTFKS 126
>pdb|1ENU|A Chain A, A New Target For Shigellosis: Rational Design And
Crystallographic Studies Of Inhibitors Of Trna-Guanine
Transglycosylase
pdb|1F3E|A Chain A, A New Target For Shigellosis: Rational Design And
Crystallographic Studies Of Inhibitors Of Trna-Guanine
Transglycosylase
pdb|1K4G|A Chain A, Crystal Structure Of Trna-guanine Transglycosylase (tgt)
Complexed With
2,
6-diamino-8-(1h-imidazol-2-ylsulfanylmethyl)-3h-
quinazoline-4- One
pdb|1K4H|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
Complexed With
2,6-Diamino-8-Propylsulfanylmethyl-3h-Quinazoline-4-One
pdb|1N2V|A Chain A, Crystal Structure Of Tgt In Complex With
2-Butyl-5,6-Dihydro-1h-
Imidazo[4,5-D]pyridazine-4,7-Dione
pdb|1Q2R|A Chain A, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2R|B Chain B, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2R|C Chain C, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2R|D Chain D, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|A Chain A, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|B Chain B, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|C Chain C, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|D Chain D, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1P0B|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
From Zymomonas Mobilis Complexed With Archaeosine
Precursor, Preq0
pdb|1P0D|A Chain A, Crystal Structure Of Zymomonas Mobilis Trna-Guanine
Transglycosylase (Tgt) Crystallised At Ph 5.5
pdb|1P0E|A Chain A, Crystal Structure Of Zymomonas Mobilis Trna-Guanine
Transglycosylase (Tgt) Cocrystallised With Preq1 At Ph
5.5
pdb|1Q4W|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-Diamino-3h-Quinazolin-4- One
pdb|1Q63|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-Diamino-8-(1h-Imidazol-2-
Ylsulfanylmethyl)-3h-Quinazoline-4-One Crystallized At
Ph 5.5
pdb|1Q65|A Chain A, Crystal Structure Of Tgt In Complex With 2,6-Diamino-8-(2-
Dimethylaminoethylsulfanylmethyl)-3h-Quinazolin-4-One
Crystallized At Ph 5.5
pdb|1Q66|A Chain A, Crystal Structure Of Tgt In Complex With
2-Amino-6-Aminomethyl-8-
Phenylsulfanylmethyl-3h-Quinazolin-4-One Crystallized At
Ph 5.5
pdb|1R5Y|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-diamino-3h-quinazolin-4- One Crystallized At Ph 5.5
pdb|1S38|A Chain A, Crystal Structure Of Tgt In Complex With
2-amino-8-methylquinazolin- 4(3h)-one
pdb|1S39|A Chain A, Crystal Structure Of Tgt In Complex With
2-Aminoquinazolin-4(3h)-One
pdb|2BBF|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
From Zymomonas Mobilis In Complex With
6-Amino-3,7-Dihydro-Imidazo[4,5- G]quinazolin-8-One
pdb|2QII|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
From Zymomonas Mobilis Complexed With Archaeosine
Precursor, Preq0
pdb|1PUD|A Chain A, Trna-Guanine Transglycosylase
pdb|2PWU|A Chain A, Trna Guanine Transglycosylase In Complex With Guanine
pdb|2Z7K|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
2-Amino-Lin- Benzoguanine
pdb|3C2N|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-2-(2-
Morpholin-4-Yl-Ethylamino)-1,7-Dihydro-Imidazo[4,
5-G]quinazolin-8-One
pdb|3C2Y|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-2-Methyl-
1,7-Dihydro-Imidazo[4,5-G]quinazolin-8-One
pdb|3C2Z|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-2-
[(Thiophen-2-Ylmethyl)-Amino]-1,7-Dihydro-Imidazo[4,
5-G]quinazolin-8- One
pdb|3EOS|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-{2-
[(Cyclohexylmethyl)amino]ethyl}-2-(Methylamino)-1,
7-Dihydro-8h- Imidazo[4,5-G]quinazolin-8-One
pdb|3EOU|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-(2-
Hydroxyethyl)-2-(Methylamino)-3,7-Dihydro-8h-Imidazo[4,
5- G]quinazolin-8-One
pdb|3GC4|A Chain A, Trna-Guanine Transglycosylase In Complex With Inhibitor
pdb|3GC5|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-(2-
Aminoethyl)-2-(Methylamino)-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin- 8-One
pdb|3GE7|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-{2-
[(Cyclopentylmethyl)amino]ethyl}-2-(Methylamino)-1,
7-Dihydro-8h- Imidazo[4,5-G]quinazolin-8-One
pdb|3GEV|A Chain A, Trna-Guanine Transglycosylase In Complex With
2-[(2-Thienylmethyl)
Amino]-1,7-Dihydro-8h-Imidazo[4,5-G]quinazolin-8-One
pdb|3V0Y|A Chain A, Trna-Guanine Transglycosylase In Complex With
Lin-Benzohypoxanthine Inhibitor
pdb|3RR4|A Chain A, Trna-Guanine Transglycosylase In Complex With
N-Methyl-Lin- Benzoguanine Inhibitor
pdb|3S1G|A Chain A, Trna-Guanine Transglycosylase In Complex With
Lin-Benzohypoxanthine Inhibitor
pdb|3SM0|A Chain A, Trna-Guanine Transglycosylase In Complex With
Lin-Benzohypoxanthine Inhibitor
pdb|3TLL|A Chain A, Trna-Guanine Transglycosylase In Complex With
N-Ethyl-Lin-Benzoguanine Inhibitor
Length = 386
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 125/211 (59%), Gaps = 5/211 (2%)
Query: 2 RVAIAKDRTVRWLDRCLAA--HRNPTTQN--IFPIVQGGLDEALRKDCAHQMVEKDVNGF 57
R A + +R++RW R A R +N +F I QG + E LR+ A + E +G+
Sbjct: 167 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGY 226
Query: 58 AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117
AVGGL+ GE +++ + + S+ LP DKP Y+MG+G D++ G DMFDCV PTR
Sbjct: 227 AVGGLAVGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTR 286
Query: 118 TARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLL 176
+ R G A G + ++ ++ D P+D++C C+ C +++RAY+HH I E L+
Sbjct: 287 SGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLM 346
Query: 177 SVHNIAFQMRLMREIRESIKEQRFPQYVKQY 207
+ HNIAF +LM++IR+SI E RF Q+ + +
Sbjct: 347 TEHNIAFYQQLMQKIRDSISEGRFSQFAQDF 377
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS 316
G + + K GGLH FMGW R +LTDSGG+Q++SL + +EEGV F+S
Sbjct: 79 GAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKS 126
>pdb|1WKD|A Chain A, Trna-Guanine Transglycosylase
Length = 386
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 125/211 (59%), Gaps = 5/211 (2%)
Query: 2 RVAIAKDRTVRWLDRCLAA--HRNPTTQN--IFPIVQGGLDEALRKDCAHQMVEKDVNGF 57
R A + +R++RW R A R +N +F I QG + E LR+ A + E +G+
Sbjct: 167 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGY 226
Query: 58 AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117
AVGGL+ GE +++ + + S+ LP DKP Y+MG+G D++ G DMFDCV PTR
Sbjct: 227 AVGGLAVGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTR 286
Query: 118 TARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLL 176
+ R G A G + ++ ++ D P+D++C C+ C +++RAY+HH I E L+
Sbjct: 287 SGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLM 346
Query: 177 SVHNIAFQMRLMREIRESIKEQRFPQYVKQY 207
+ HNIAF +LM++IR+SI E RF Q+ + +
Sbjct: 347 TEHNIAFYQQLMQKIRDSISEGRFSQFAQDF 377
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS 316
G + + K GGLH FMGW R +LT SGG+Q++SL + +EEGV F+S
Sbjct: 79 GAERIAKLGGLHSFMGWDRPILTASGGYQVMSLSSLTKQSEEGVTFKS 126
>pdb|1WKE|A Chain A, Trna-Guanine Transglycosylase
Length = 386
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 125/211 (59%), Gaps = 5/211 (2%)
Query: 2 RVAIAKDRTVRWLDRCLAA--HRNPTTQN--IFPIVQGGLDEALRKDCAHQMVEKDVNGF 57
R A + +R++RW R A R +N +F I QG + E LR+ A + E +G+
Sbjct: 167 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGY 226
Query: 58 AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117
AVGGL+ GE +++ + + S+ LP DKP Y+MG+G D++ G DMFDCV PTR
Sbjct: 227 AVGGLAVGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTR 286
Query: 118 TARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLL 176
+ R G A G + ++ ++ D P+D++C C+ C +++RAY+HH I E L+
Sbjct: 287 SGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLM 346
Query: 177 SVHNIAFQMRLMREIRESIKEQRFPQYVKQY 207
+ HNIAF +LM++IR+SI E RF Q+ + +
Sbjct: 347 TEHNIAFYQQLMQKIRDSISEGRFSQFAQDF 377
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS 316
G + + K GGLH FMGW R +LTDSGG+Q++SL + +EEGV F+S
Sbjct: 79 GAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKS 126
>pdb|3HFY|A Chain A, Mutant Of Trna-Guanine Transglycosylase (K52m)
Length = 386
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 125/211 (59%), Gaps = 5/211 (2%)
Query: 2 RVAIAKDRTVRWLDRCLAA--HRNPTTQN--IFPIVQGGLDEALRKDCAHQMVEKDVNGF 57
R A + +R++RW R A R +N +F I QG + E LR+ A + E +G+
Sbjct: 167 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGY 226
Query: 58 AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117
AVGGL+ GE +++ + + S+ LP DKP Y+MG+G D++ G DMFDCV PTR
Sbjct: 227 AVGGLAVGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTR 286
Query: 118 TARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLL 176
+ R G A G + ++ ++ D P+D++C C+ C +++RAY+HH I E L+
Sbjct: 287 SGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLM 346
Query: 177 SVHNIAFQMRLMREIRESIKEQRFPQYVKQY 207
+ HNIAF +LM++IR+SI E RF Q+ + +
Sbjct: 347 TEHNIAFYQQLMQKIRDSISEGRFSQFAQDF 377
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS 316
G + + K GGLH FMGW R +LTDSGG+Q++SL + +EEGV F+S
Sbjct: 79 GAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKS 126
>pdb|1EFZ|A Chain A, Mutagenesis And Crystallographic Studies Of Zymomonas
Mobilis Trna- Guanine Transglycosylase To Elucidate The
Role Of Serine 103 For Enzymatic Activity
Length = 386
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 125/211 (59%), Gaps = 5/211 (2%)
Query: 2 RVAIAKDRTVRWLDRCLAA--HRNPTTQN--IFPIVQGGLDEALRKDCAHQMVEKDVNGF 57
R A + +R++RW R A R +N +F I QG + E LR+ A + E +G+
Sbjct: 167 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGY 226
Query: 58 AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117
AVGGL+ GE +++ + + S+ LP DKP Y+MG+G D++ G DMFDCV PTR
Sbjct: 227 AVGGLAVGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTR 286
Query: 118 TARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLL 176
+ R G A G + ++ ++ D P+D++C C+ C +++RAY+HH I E L+
Sbjct: 287 SGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLM 346
Query: 177 SVHNIAFQMRLMREIRESIKEQRFPQYVKQY 207
+ HNIAF +LM++IR+SI E RF Q+ + +
Sbjct: 347 TEHNIAFYQQLMQKIRDSISEGRFSQFAQDF 377
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS 316
G + + K GGLH FMGW R +LTD+GG+Q++SL + +EEGV F+S
Sbjct: 79 GAERIAKLGGLHSFMGWDRPILTDAGGYQVMSLSSLTKQSEEGVTFKS 126
>pdb|1WKF|A Chain A, Trna-Guanine Transglycosylase
Length = 386
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 125/211 (59%), Gaps = 5/211 (2%)
Query: 2 RVAIAKDRTVRWLDRCLAA--HRNPTTQN--IFPIVQGGLDEALRKDCAHQMVEKDVNGF 57
R A + +R++RW R A R +N +F I QG + E LR+ A + E +G+
Sbjct: 167 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGY 226
Query: 58 AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117
AVGGL+ GE +++ + + S+ LP DKP Y+MG+G D++ G DMFDCV PTR
Sbjct: 227 AVGGLAVGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTR 286
Query: 118 TARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLL 176
+ R G A G + ++ ++ D P+D++C C+ C +++RAY+HH I E L+
Sbjct: 287 SGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLM 346
Query: 177 SVHNIAFQMRLMREIRESIKEQRFPQYVKQY 207
+ HNIAF +LM++IR+SI E RF Q+ + +
Sbjct: 347 TEHNIAFYQQLMQKIRDSISEGRFSQFAQDF 377
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS 316
G + + K GGLH FMGW R +LTDSGG+Q++SL + +EEGV F+S
Sbjct: 79 GAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKS 126
>pdb|1Y5V|A Chain A, Trna-guanine Transglycosylase (tgt) In Complex With
6-amino-4-(2-
Phenylethyl)-1,7-dihydro-8h-imidazo[4,
5-g]quinazolin-8-one
pdb|1Y5W|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-4-[2-(4-
Methylphenyl)ethyl]-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
pdb|1Y5X|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-4-[2-(4-
Methoxyphenyl)ethyl]-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
pdb|1Y5X|D Chain D, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-4-[2-(4-
Methoxyphenyl)ethyl]-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
pdb|2QZR|A Chain A, Trna-Guanine Transglycosylase(Tgt) In Complex With
6-Amino-2-[(1-
Naphthylmethyl)amino]-3,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
Length = 385
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 125/211 (59%), Gaps = 5/211 (2%)
Query: 2 RVAIAKDRTVRWLDRCLAA--HRNPTTQN--IFPIVQGGLDEALRKDCAHQMVEKDVNGF 57
R A + +R++RW R A R +N +F I QG + E LR+ A + E +G+
Sbjct: 166 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGY 225
Query: 58 AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117
AVGGL+ GE +++ + + S+ LP DKP Y+MG+G D++ G DMFDCV PTR
Sbjct: 226 AVGGLAVGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTR 285
Query: 118 TARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLL 176
+ R G A G + ++ ++ D P+D++C C+ C +++RAY+HH I E L+
Sbjct: 286 SGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLM 345
Query: 177 SVHNIAFQMRLMREIRESIKEQRFPQYVKQY 207
+ HNIAF +LM++IR+SI E RF Q+ + +
Sbjct: 346 TEHNIAFYQQLMQKIRDSISEGRFSQFAQDF 376
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS 316
G + + K GGLH FMGW R +LTDSGG+Q++SL + +EEGV F+S
Sbjct: 78 GAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKS 125
>pdb|2POT|A Chain A, Trna Guanine Transglycosylase (Tgt) E235q Mutant In
Complex With Guanine
pdb|2PWV|A Chain A, Trna Guanine Transglycosylase E235q Mutant In Complex With
Preq0
pdb|2Z1V|A Chain A, Trna Guanine Transglycosylase E235q Mutant Apo Structure,
Ph 8.5
pdb|2Z1W|A Chain A, Trna Guanine Transglycosylase Tgt E235q Mutant In Complex
With Bdi (2-
Butyl-5,6-Dihydro-1h-Imidazo[4,5-D]pyridazine-4,7-Dione)
pdb|2Z1X|A Chain A, Trna Guanine Transglycosylase E235q Mutant In Complex With
Preq1
Length = 386
Score = 160 bits (406), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 125/211 (59%), Gaps = 5/211 (2%)
Query: 2 RVAIAKDRTVRWLDRCLAA--HRNPTTQN--IFPIVQGGLDEALRKDCAHQMVEKDVNGF 57
R A + +R++RW R A R +N +F I QG + E LR+ A + E +G+
Sbjct: 167 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGY 226
Query: 58 AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117
AVGGL+ G+ +++ + + S+ LP DKP Y+MG+G D++ G DMFDCV PTR
Sbjct: 227 AVGGLAVGQGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTR 286
Query: 118 TARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLL 176
+ R G A G + ++ ++ D P+D++C C+ C +++RAY+HH I E L+
Sbjct: 287 SGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLM 346
Query: 177 SVHNIAFQMRLMREIRESIKEQRFPQYVKQY 207
+ HNIAF +LM++IR+SI E RF Q+ + +
Sbjct: 347 TEHNIAFYQQLMQKIRDSISEGRFSQFAQDF 377
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS 316
G + + K GGLH FMGW R +LTDSGG+Q++SL + +EEGV F+S
Sbjct: 79 GAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKS 126
>pdb|2OKO|A Chain A, Z. Mobilis Trna Guanine Transglycosylase E235q Mutant
Apo-Structure At Ph 5.5
Length = 385
Score = 160 bits (406), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 125/211 (59%), Gaps = 5/211 (2%)
Query: 2 RVAIAKDRTVRWLDRCLAA--HRNPTTQN--IFPIVQGGLDEALRKDCAHQMVEKDVNGF 57
R A + +R++RW R A R +N +F I QG + E LR+ A + E +G+
Sbjct: 166 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGY 225
Query: 58 AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117
AVGGL+ G+ +++ + + S+ LP DKP Y+MG+G D++ G DMFDCV PTR
Sbjct: 226 AVGGLAVGQGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTR 285
Query: 118 TARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLL 176
+ R G A G + ++ ++ D P+D++C C+ C +++RAY+HH I E L+
Sbjct: 286 SGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLM 345
Query: 177 SVHNIAFQMRLMREIRESIKEQRFPQYVKQY 207
+ HNIAF +LM++IR+SI E RF Q+ + +
Sbjct: 346 TEHNIAFYQQLMQKIRDSISEGRFSQFAQDF 376
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS 316
G + + K GGLH FMGW R +LTDSGG+Q++SL + +EEGV F+S
Sbjct: 78 GAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKS 125
>pdb|3UNT|A Chain A, Trna-Guanine Transglycosylase E339q Mutant
Length = 388
Score = 160 bits (406), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 125/211 (59%), Gaps = 5/211 (2%)
Query: 2 RVAIAKDRTVRWLDRCLAA--HRNPTTQN--IFPIVQGGLDEALRKDCAHQMVEKDVNGF 57
R A + +R++RW R A R +N +F I QG + E LR+ A + E +G+
Sbjct: 169 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGY 228
Query: 58 AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117
AVGGL+ GE +++ + + S+ LP DKP Y+MG+G D++ G DMFDCV PTR
Sbjct: 229 AVGGLAVGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTR 288
Query: 118 TARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLL 176
+ R G A G + ++ ++ D P+D++C C+ C +++RAY+HH I + L+
Sbjct: 289 SGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGQILGAMLM 348
Query: 177 SVHNIAFQMRLMREIRESIKEQRFPQYVKQY 207
+ HNIAF +LM++IR+SI E RF Q+ + +
Sbjct: 349 TEHNIAFYQQLMQKIRDSISEGRFSQFAQDF 379
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS 316
G + + K GGLH FMGW R +LTDSGG+Q++SL + +EEGV F+S
Sbjct: 81 GAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKS 128
>pdb|1PXG|A Chain A, Crystal Structure Of The Mutated Trna-Guanine
Transglycosylase (Tgt) D280e Complexed With Preq1
Length = 382
Score = 160 bits (405), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 125/211 (59%), Gaps = 5/211 (2%)
Query: 2 RVAIAKDRTVRWLDRCLAA--HRNPTTQN--IFPIVQGGLDEALRKDCAHQMVEKDVNGF 57
R A + +R++RW R A R +N +F I QG + E LR+ A + E +G+
Sbjct: 166 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGY 225
Query: 58 AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117
AVGGL+ GE +++ + + S+ LP DKP Y+MG+G D++ G DMF+CV PTR
Sbjct: 226 AVGGLAVGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFECVLPTR 285
Query: 118 TARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLL 176
+ R G A G + ++ ++ D P+D++C C+ C +++RAY+HH I E L+
Sbjct: 286 SGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLM 345
Query: 177 SVHNIAFQMRLMREIRESIKEQRFPQYVKQY 207
+ HNIAF +LM++IR+SI E RF Q+ + +
Sbjct: 346 TEHNIAFYQQLMQKIRDSISEGRFSQFAQDF 376
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS 316
G + + K GGLH FMGW R +LTDSGG+Q++SL + +EEGV F+S
Sbjct: 78 GAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKS 125
>pdb|3UVI|A Chain A, Trna-Guanine Transglycosylase C158s C281s W326e E339q
Mutant
Length = 388
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 123/211 (58%), Gaps = 5/211 (2%)
Query: 2 RVAIAKDRTVRWLDRCLAA--HRNPTTQN--IFPIVQGGLDEALRKDCAHQMVEKDVNGF 57
R A + +R++RW R A R +N +F I QG + E LR+ A + E +G+
Sbjct: 169 RAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGY 228
Query: 58 AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117
AVGGL+ GE +++ + + S+ LP DKP Y+MG+G D++ G DMFD V PTR
Sbjct: 229 AVGGLAVGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDSVLPTR 288
Query: 118 TARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLL 176
+ R G A G + ++ ++ D P+D++C C+ C + +RAY+HH I + L+
Sbjct: 289 SGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKESRAYIHHLIRAGQILGAMLM 348
Query: 177 SVHNIAFQMRLMREIRESIKEQRFPQYVKQY 207
+ HNIAF +LM++IR+SI E RF Q+ + +
Sbjct: 349 TEHNIAFYQQLMQKIRDSISEGRFSQFAQDF 379
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS 316
G + + K GGLH FMGW R +LTDSGG+Q++SL + +EEGV F+S
Sbjct: 81 GAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKS 128
>pdb|2ASH|A Chain A, Crystal Structure Of Queuine Trna-Ribosyltransferase (Ec
2.4.2.29) (Trna-Guanine (Tm1561) From Thermotoga
Maritima At 1.90 A Resolution
pdb|2ASH|B Chain B, Crystal Structure Of Queuine Trna-Ribosyltransferase (Ec
2.4.2.29) (Trna-Guanine (Tm1561) From Thermotoga
Maritima At 1.90 A Resolution
pdb|2ASH|C Chain C, Crystal Structure Of Queuine Trna-Ribosyltransferase (Ec
2.4.2.29) (Trna-Guanine (Tm1561) From Thermotoga
Maritima At 1.90 A Resolution
pdb|2ASH|D Chain D, Crystal Structure Of Queuine Trna-Ribosyltransferase (Ec
2.4.2.29) (Trna-Guanine (Tm1561) From Thermotoga
Maritima At 1.90 A Resolution
Length = 381
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 113/201 (56%), Gaps = 2/201 (0%)
Query: 3 VAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGL 62
V A +RT RW R A + Q +F IVQGG+ LR++ A Q+ +G+A+GGL
Sbjct: 166 VKEATERTYRWALRSKKAFKT-ENQALFGIVQGGIYPDLRRESALQLTSIGFDGYAIGGL 224
Query: 63 SGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFG 122
S GE + V++ LP+DKPRY MG G +L G DMFD VFPTR AR G
Sbjct: 225 SIGEERSLTLEMTEVTVEFLPEDKPRYFMGGGSPELILELVDRGVDMFDSVFPTRIARHG 284
Query: 123 SALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHHIAT-VEPSACHLLSVHNI 181
+AL G+L LK P+D +C C TC +TR+Y+HH+ E LL++HNI
Sbjct: 285 TALTWNGKLNLKASYNKRSLEPVDERCGCYTCKNFTRSYIHHLFDRGEVLGQILLTIHNI 344
Query: 182 AFQMRLMREIRESIKEQRFPQ 202
F + LM+E+R SI+ F +
Sbjct: 345 NFMISLMKEVRRSIESGTFKE 365
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQSP 317
GV+++K GLH FMGWKR +LTDSGGFQ+ SL K I +EGV F+SP
Sbjct: 78 GVEIIKLHRGLHNFMGWKRPILTDSGGFQVFSLPKI-RIDDEGVVFRSP 125
>pdb|1IQ8|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii
pdb|1IQ8|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii
pdb|1IT7|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase Complexed With Guanine
pdb|1IT7|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase Complexed With Guanine
pdb|1IT8|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii Complexed
With Archaeosine Precursor, Preq0
pdb|1IT8|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii Complexed
With Archaeosine Precursor, Preq0
pdb|1J2B|A Chain A, Crystal Structure Of Archaeosine Trna-guanine
Transglycosylase Complexed With Lambda-form Trna(val)
pdb|1J2B|B Chain B, Crystal Structure Of Archaeosine Trna-guanine
Transglycosylase Complexed With Lambda-form Trna(val)
Length = 582
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 16/197 (8%)
Query: 7 KDRTVRWLDRCLAAHRNPTTQNIFPI---VQGGLDEALRKDCAHQMVEKDVNGFAVGG-- 61
+++ V+ L+ L+ R P+ +QG LR+ A ++ + +GG
Sbjct: 139 REQAVKELEITLSRAREAEEIKEIPMNATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVV 198
Query: 62 -LSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTAR 120
L D V+ S L D+P ++ G G + + A+G D+FD A+
Sbjct: 199 PLLESYRFRDVVDIVISSKMALRPDRPVHLFGAGHPIVFALAVAMGVDLFDSASYALYAK 258
Query: 121 FGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHHIATVEPSACHLLSVHN 180
+ +G +L DE D+ P C C C++YT L + E LL++HN
Sbjct: 259 DDRYMTPEGTKRL--DE--LDYFP----CSCPVCSKYTPQELREMPKEE--RTRLLALHN 308
Query: 181 IAFQMRLMREIRESIKE 197
+ ++ ++++IKE
Sbjct: 309 LWVIKEEIKRVKQAIKE 325
>pdb|2YCH|A Chain A, Pilm-Piln Type Iv Pilus Biogenesis Complex
Length = 377
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 210 DAYPDENYPRWTIDALRAVNIELTESEPCRSGLRRSLKCLQISTYLVRSETACAVGYVIG 269
DA + P DA+R V +ELT+ LRRSL+ +I E + VGY++
Sbjct: 265 DAERERYSPGRIYDAIRPVLVELTQE------LRRSLEFFRIQL----EEASPEVGYLL- 313
Query: 270 VDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQS 316
GG K G +LLTD+ G + + + + + +F+S
Sbjct: 314 -------GGGSKLRGLA-SLLTDTLGVNLEPVNPWEAVAVDPKRFES 352
>pdb|3KCU|A Chain A, Structure Of Formate Channel
pdb|3KCU|B Chain B, Structure Of Formate Channel
pdb|3KCU|C Chain C, Structure Of Formate Channel
pdb|3KCU|D Chain D, Structure Of Formate Channel
pdb|3KCU|E Chain E, Structure Of Formate Channel
pdb|3KCV|A Chain A, Structure Of Formate Channel
pdb|3KCV|B Chain B, Structure Of Formate Channel
pdb|3KCV|C Chain C, Structure Of Formate Channel
pdb|3KCV|D Chain D, Structure Of Formate Channel
pdb|3KCV|E Chain E, Structure Of Formate Channel
pdb|3KCV|F Chain F, Structure Of Formate Channel
pdb|3KCV|G Chain G, Structure Of Formate Channel
pdb|3KCV|H Chain H, Structure Of Formate Channel
pdb|3KCV|I Chain I, Structure Of Formate Channel
pdb|3KCV|J Chain J, Structure Of Formate Channel
Length = 285
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 71 FWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQ 130
F+ + +P + V GI F++ L++C GAD+F A+ S + GQ
Sbjct: 51 FYITATTGTGTMPFGMAKLVGGICFSLGLILCVVCGADLFTSTVLIVVAK-ASGRITWGQ 109
Query: 131 L 131
L
Sbjct: 110 L 110
>pdb|3Q7K|A Chain A, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|B Chain B, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|C Chain C, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|D Chain D, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|E Chain E, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|G Chain G, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|H Chain H, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|I Chain I, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|J Chain J, Formate Channel Foca From Salmonella Typhimurium
pdb|3Q7K|K Chain K, Formate Channel Foca From Salmonella Typhimurium
Length = 293
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 71 FWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQ 130
F+ + +P + + GI F++ L++C GAD+F A+ S + GQ
Sbjct: 51 FYITATTGTGAMPYGMAKLIGGICFSLGLILCVICGADLFTSTVLIVVAK-ASGRITWGQ 109
Query: 131 L 131
L
Sbjct: 110 L 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,407,090
Number of Sequences: 62578
Number of extensions: 372513
Number of successful extensions: 1086
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1017
Number of HSP's gapped (non-prelim): 47
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)