Query psy14115
Match_columns 319
No_of_seqs 356 out of 2037
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 19:54:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3908|consensus 100.0 3.8E-77 8.2E-82 556.1 15.6 233 1-233 162-395 (396)
2 TIGR00430 Q_tRNA_tgt tRNA-guan 100.0 4.6E-69 1E-73 525.9 24.6 213 1-213 151-365 (368)
3 TIGR00449 tgt_general tRNA-gua 100.0 1.6E-68 3.5E-73 522.0 23.5 213 1-213 151-364 (367)
4 COG0343 Tgt Queuine/archaeosin 100.0 8.2E-69 1.8E-73 518.4 20.9 213 1-213 151-364 (372)
5 PRK00112 tgt queuine tRNA-ribo 100.0 4E-68 8.6E-73 519.1 23.5 209 1-209 155-365 (366)
6 PRK01008 queuine tRNA-ribosylt 100.0 1.9E-67 4.1E-72 513.6 22.2 198 1-199 171-371 (372)
7 PF01702 TGT: Queuine tRNA-rib 100.0 1.2E-64 2.7E-69 467.3 16.9 209 1-209 29-238 (238)
8 PRK13533 7-cyano-7-deazaguanin 100.0 4.3E-57 9.2E-62 454.4 22.6 210 1-228 133-345 (487)
9 TIGR00432 arcsn_tRNA_tgt tRNA- 100.0 2.6E-56 5.6E-61 452.8 21.1 211 1-228 29-243 (540)
10 PRK13534 7-cyano-7-deazaguanin 100.0 7.5E-55 1.6E-59 450.2 21.1 208 1-228 132-342 (639)
11 KOG3909|consensus 100.0 2E-46 4.4E-51 355.5 13.8 208 2-209 156-382 (414)
12 COG0343 Tgt Queuine/archaeosin 99.9 1.1E-27 2.5E-32 232.4 3.9 82 236-319 33-114 (372)
13 PRK01008 queuine tRNA-ribosylt 99.9 6.4E-27 1.4E-31 229.0 4.2 77 237-319 40-134 (372)
14 KOG3908|consensus 99.9 2.1E-26 4.5E-31 216.1 4.1 82 236-319 44-125 (396)
15 TIGR00430 Q_tRNA_tgt tRNA-guan 99.9 2.1E-25 4.7E-30 218.5 5.5 82 236-319 33-114 (368)
16 TIGR00449 tgt_general tRNA-gua 99.9 5.7E-25 1.2E-29 215.5 5.4 82 236-319 33-114 (367)
17 PRK00112 tgt queuine tRNA-ribo 99.9 4.5E-24 9.7E-29 209.2 5.5 82 236-319 37-118 (366)
18 PRK13534 7-cyano-7-deazaguanin 99.8 1.5E-20 3.3E-25 195.4 1.3 81 236-318 33-113 (639)
19 PRK13533 7-cyano-7-deazaguanin 99.7 1.9E-19 4E-24 182.1 1.2 79 236-318 36-114 (487)
20 COG1549 Queuine tRNA-ribosyltr 98.9 3.1E-09 6.6E-14 106.9 6.3 115 71-234 83-197 (519)
21 cd03174 DRE_TIM_metallolyase D 94.5 0.54 1.2E-05 43.3 11.4 89 37-126 143-235 (265)
22 cd07941 DRE_TIM_LeuA3 Desulfob 94.1 0.48 1E-05 44.9 10.4 119 8-127 115-241 (273)
23 cd07944 DRE_TIM_HOA_like 4-hyd 93.9 0.79 1.7E-05 43.4 11.5 90 36-125 134-227 (266)
24 cd07939 DRE_TIM_NifV Streptomy 93.9 0.88 1.9E-05 42.6 11.6 96 28-125 126-226 (259)
25 PRK12330 oxaloacetate decarbox 93.8 0.42 9.2E-06 49.4 10.0 87 37-123 152-242 (499)
26 cd07937 DRE_TIM_PC_TC_5S Pyruv 93.5 0.86 1.9E-05 43.3 11.0 88 35-124 144-235 (275)
27 PF00682 HMGL-like: HMGL-like 93.3 0.62 1.3E-05 42.6 9.3 96 28-124 124-224 (237)
28 cd07940 DRE_TIM_IPMS 2-isoprop 93.2 1.1 2.4E-05 42.2 11.1 98 28-125 130-233 (268)
29 PLN02417 dihydrodipicolinate s 93.2 0.68 1.5E-05 44.0 9.7 83 34-117 16-107 (280)
30 cd07938 DRE_TIM_HMGL 3-hydroxy 92.9 1.2 2.6E-05 42.3 11.0 83 32-115 141-227 (274)
31 PRK08195 4-hyroxy-2-oxovalerat 92.4 1.5 3.2E-05 43.1 11.0 92 35-126 139-234 (337)
32 cd00954 NAL N-Acetylneuraminic 92.3 0.96 2.1E-05 43.0 9.5 83 34-117 15-107 (288)
33 PRK05692 hydroxymethylglutaryl 92.3 1.5 3.2E-05 42.2 10.7 85 32-117 147-235 (287)
34 PRK07259 dihydroorotate dehydr 92.1 2.2 4.8E-05 40.6 11.7 98 11-112 77-188 (301)
35 COG5016 Pyruvate/oxaloacetate 91.8 1 2.3E-05 45.5 9.2 78 39-118 155-236 (472)
36 cd07945 DRE_TIM_CMS Leptospira 91.8 2.6 5.6E-05 40.3 11.7 86 37-123 144-233 (280)
37 PRK12331 oxaloacetate decarbox 91.8 1.2 2.6E-05 45.5 9.9 87 37-125 151-241 (448)
38 cd07943 DRE_TIM_HOA 4-hydroxy- 91.5 2.5 5.3E-05 39.7 11.1 91 35-126 136-230 (263)
39 PRK04147 N-acetylneuraminate l 91.4 1.4 3E-05 42.0 9.5 83 34-117 18-110 (293)
40 PLN02746 hydroxymethylglutaryl 91.3 2.4 5.1E-05 42.0 11.2 84 32-115 189-275 (347)
41 cd00950 DHDPS Dihydrodipicolin 91.1 1.7 3.7E-05 41.0 9.6 83 34-117 15-106 (284)
42 cd00952 CHBPH_aldolase Trans-o 91.0 1.6 3.5E-05 42.1 9.7 83 34-117 23-114 (309)
43 cd07948 DRE_TIM_HCS Saccharomy 91.0 3.3 7.1E-05 39.2 11.5 88 37-126 138-229 (262)
44 cd00945 Aldolase_Class_I Class 90.9 0.9 1.9E-05 39.4 7.1 77 30-117 3-89 (201)
45 PF00701 DHDPS: Dihydrodipicol 90.6 0.78 1.7E-05 43.4 6.9 83 34-117 16-107 (289)
46 PRK14041 oxaloacetate decarbox 90.5 1.9 4.1E-05 44.4 10.0 84 37-122 150-237 (467)
47 TIGR03249 KdgD 5-dehydro-4-deo 90.3 1.7 3.6E-05 41.6 8.9 82 34-116 20-109 (296)
48 COG0329 DapA Dihydrodipicolina 90.3 1.4 3E-05 42.5 8.4 89 34-124 19-119 (299)
49 PRK09282 pyruvate carboxylase 90.1 1.9 4.1E-05 45.6 9.8 85 37-123 151-239 (592)
50 PRK14042 pyruvate carboxylase 89.9 1.8 3.9E-05 45.9 9.5 88 37-126 151-242 (596)
51 PRK03170 dihydrodipicolinate s 89.9 2.4 5.1E-05 40.2 9.6 83 34-117 16-107 (292)
52 PHA01745 hypothetical protein 89.7 0.23 4.9E-06 47.6 2.4 98 27-131 101-201 (306)
53 TIGR01108 oadA oxaloacetate de 89.5 2.3 4.9E-05 44.9 9.8 87 38-126 147-237 (582)
54 cd00408 DHDPS-like Dihydrodipi 89.3 2.6 5.7E-05 39.5 9.3 85 34-119 12-105 (281)
55 TIGR00683 nanA N-acetylneurami 89.2 2.6 5.7E-05 40.2 9.3 83 34-117 15-107 (290)
56 cd04740 DHOD_1B_like Dihydroor 89.2 6.8 0.00015 37.1 12.1 98 11-112 75-185 (296)
57 cd02940 DHPD_FMN Dihydropyrimi 88.8 6.4 0.00014 37.7 11.7 98 12-111 85-198 (299)
58 TIGR00674 dapA dihydrodipicoli 88.7 3.2 6.9E-05 39.3 9.5 84 34-118 13-105 (285)
59 TIGR02313 HpaI-NOT-DapA 2,4-di 88.7 3 6.5E-05 39.9 9.3 84 34-118 15-107 (294)
60 PRK03620 5-dehydro-4-deoxygluc 87.9 4.2 9.1E-05 39.0 9.8 82 34-116 22-111 (303)
61 TIGR03217 4OH_2_O_val_ald 4-hy 87.8 3.8 8.3E-05 40.2 9.6 91 36-126 139-233 (333)
62 PRK12581 oxaloacetate decarbox 87.7 3.9 8.4E-05 42.2 9.9 84 38-123 161-248 (468)
63 TIGR02090 LEU1_arch isopropylm 87.6 6.8 0.00015 38.7 11.3 94 29-124 129-227 (363)
64 PRK14040 oxaloacetate decarbox 87.3 3.5 7.5E-05 43.7 9.5 87 38-126 153-243 (593)
65 KOG2368|consensus 87.1 2.9 6.4E-05 39.5 7.8 112 3-114 129-246 (316)
66 TIGR02660 nifV_homocitr homoci 86.3 6.2 0.00013 39.0 10.2 96 28-125 129-229 (365)
67 cd00951 KDGDH 5-dehydro-4-deox 86.2 6.3 0.00014 37.5 9.9 83 34-117 15-105 (289)
68 PLN02495 oxidoreductase, actin 84.7 11 0.00023 38.0 11.1 98 11-110 98-211 (385)
69 cd04738 DHOD_2_like Dihydrooro 84.6 16 0.00034 35.6 12.0 86 28-113 204-309 (327)
70 PRK11858 aksA trans-homoaconit 84.6 11 0.00024 37.4 11.2 96 28-125 132-232 (378)
71 PRK12999 pyruvate carboxylase; 84.1 5.1 0.00011 45.6 9.4 87 37-125 688-778 (1146)
72 cd00331 IGPS Indole-3-glycerol 83.8 3.9 8.5E-05 36.9 7.0 66 46-112 134-200 (217)
73 PLN02979 glycolate oxidase 83.7 5.1 0.00011 40.1 8.2 83 31-116 225-310 (366)
74 TIGR01036 pyrD_sub2 dihydrooro 83.4 11 0.00025 36.8 10.5 108 5-112 189-316 (335)
75 cd02810 DHOD_DHPD_FMN Dihydroo 83.4 20 0.00042 33.7 11.8 99 12-113 84-196 (289)
76 TIGR01235 pyruv_carbox pyruvat 83.1 5.6 0.00012 45.3 9.2 79 38-118 687-769 (1143)
77 PRK05286 dihydroorotate dehydr 82.4 15 0.00034 35.9 11.0 105 6-112 193-317 (344)
78 PLN02493 probable peroxisomal 82.2 5.9 0.00013 39.6 8.1 82 31-116 226-311 (367)
79 cd02810 DHOD_DHPD_FMN Dihydroo 81.7 14 0.0003 34.7 10.2 84 29-112 165-271 (289)
80 cd00953 KDG_aldolase KDG (2-ke 81.2 8.5 0.00019 36.5 8.5 78 35-116 15-101 (279)
81 cd02071 MM_CoA_mut_B12_BD meth 81.1 11 0.00024 31.1 8.2 66 44-110 41-106 (122)
82 PLN03228 methylthioalkylmalate 81.0 19 0.0004 37.6 11.4 97 29-125 227-330 (503)
83 PRK00915 2-isopropylmalate syn 79.4 12 0.00025 38.9 9.4 97 28-124 136-239 (513)
84 PRK12344 putative alpha-isopro 79.4 17 0.00038 37.9 10.7 86 37-124 155-244 (524)
85 PRK11197 lldD L-lactate dehydr 79.0 5.5 0.00012 40.0 6.7 82 31-116 247-332 (381)
86 PLN02535 glycolate oxidase 77.9 5.9 0.00013 39.6 6.5 84 31-118 225-312 (364)
87 PRK08318 dihydropyrimidine deh 77.9 35 0.00077 34.1 12.1 83 27-111 100-198 (420)
88 cd02809 alpha_hydroxyacid_oxid 76.8 9.2 0.0002 36.6 7.3 71 44-115 184-258 (299)
89 cd04741 DHOD_1A_like Dihydroor 75.4 37 0.0008 32.5 11.0 87 27-113 158-272 (294)
90 PLN02591 tryptophan synthase 75.2 40 0.00086 31.9 10.9 78 30-112 135-217 (250)
91 TIGR00973 leuA_bact 2-isopropy 74.7 30 0.00066 35.8 10.9 96 28-123 133-235 (494)
92 TIGR01306 GMP_reduct_2 guanosi 74.1 51 0.0011 32.4 11.7 78 32-115 140-229 (321)
93 cd02809 alpha_hydroxyacid_oxid 73.6 19 0.00042 34.4 8.6 83 29-113 118-200 (299)
94 PRK13753 dihydropteroate synth 73.5 18 0.00038 35.0 8.2 75 35-113 18-103 (279)
95 PRK05848 nicotinate-nucleotide 72.8 19 0.00041 34.5 8.3 65 50-120 199-264 (273)
96 cd03332 LMO_FMN L-Lactate 2-mo 72.4 11 0.00023 38.0 6.7 79 32-113 256-337 (383)
97 PRK11613 folP dihydropteroate 72.2 25 0.00055 33.8 9.0 85 26-113 14-117 (282)
98 cd04740 DHOD_1B_like Dihydroor 72.0 42 0.00091 31.7 10.5 41 71-113 219-260 (296)
99 PF01070 FMN_dh: FMN-dependent 71.9 6 0.00013 39.2 4.8 76 41-116 234-312 (356)
100 PF04131 NanE: Putative N-acet 71.4 17 0.00037 33.3 7.2 85 27-117 33-123 (192)
101 PRK06843 inosine 5-monophospha 70.9 26 0.00056 35.6 9.1 82 27-113 141-222 (404)
102 PRK09389 (R)-citramalate synth 70.8 31 0.00068 35.6 9.9 95 29-125 131-230 (488)
103 PRK07114 keto-hydroxyglutarate 69.8 29 0.00063 32.3 8.5 83 27-115 15-100 (222)
104 TIGR01305 GMP_reduct_1 guanosi 69.2 57 0.0012 32.5 10.8 70 36-110 103-175 (343)
105 PLN02274 inosine-5'-monophosph 69.2 20 0.00044 37.2 8.1 80 26-110 235-314 (505)
106 PLN02826 dihydroorotate dehydr 69.0 1E+02 0.0022 31.3 12.9 86 27-112 263-369 (409)
107 CHL00200 trpA tryptophan synth 68.9 60 0.0013 30.9 10.7 43 68-112 187-230 (263)
108 PRK07565 dihydroorotate dehydr 68.6 68 0.0015 31.2 11.3 97 12-112 88-196 (334)
109 cd04730 NPD_like 2-Nitropropan 68.4 18 0.0004 32.6 6.9 71 47-119 116-191 (236)
110 PTZ00314 inosine-5'-monophosph 68.2 39 0.00085 35.0 10.0 82 26-112 228-309 (495)
111 PF12167 DUF3596: Domain of un 67.9 6 0.00013 29.6 3.0 25 177-201 31-55 (64)
112 COG0800 Eda 2-keto-3-deoxy-6-p 67.8 42 0.00092 31.1 9.1 77 27-113 13-92 (211)
113 cd02811 IDI-2_FMN Isopentenyl- 67.8 45 0.00098 32.4 9.9 70 43-113 192-284 (326)
114 PLN02321 2-isopropylmalate syn 67.8 53 0.0011 35.3 11.0 97 28-124 227-330 (632)
115 cd02940 DHPD_FMN Dihydropyrimi 66.7 20 0.00043 34.3 7.0 42 70-111 237-279 (299)
116 TIGR00977 LeuA_rel 2-isopropyl 66.3 46 0.001 34.8 10.1 87 37-123 151-240 (526)
117 cd01572 QPRTase Quinolinate ph 66.2 24 0.00051 33.6 7.4 63 50-120 199-261 (268)
118 cd04736 MDH_FMN Mandelate dehy 65.5 19 0.0004 36.0 6.7 72 43-117 247-322 (361)
119 TIGR03147 cyt_nit_nrfF cytochr 64.6 17 0.00036 31.2 5.4 53 144-213 36-88 (126)
120 PHA01745 hypothetical protein 64.5 2.5 5.3E-05 40.7 0.4 20 283-302 31-50 (306)
121 PRK05458 guanosine 5'-monophos 63.9 36 0.00078 33.5 8.3 73 36-112 93-167 (326)
122 cd04737 LOX_like_FMN L-Lactate 63.5 25 0.00054 34.9 7.2 72 44-116 233-308 (351)
123 TIGR00262 trpA tryptophan synt 63.4 94 0.002 29.3 10.8 42 69-112 184-226 (256)
124 cd03174 DRE_TIM_metallolyase D 63.3 32 0.00069 31.5 7.5 80 37-117 16-98 (265)
125 PRK07455 keto-hydroxyglutarate 62.1 14 0.0003 33.2 4.7 60 45-117 76-135 (187)
126 TIGR02151 IPP_isom_2 isopenten 62.0 40 0.00087 32.9 8.3 69 43-113 193-283 (333)
127 cd07942 DRE_TIM_LeuA Mycobacte 61.8 1.5E+02 0.0034 28.4 13.2 89 37-125 153-253 (284)
128 TIGR01037 pyrD_sub1_fam dihydr 61.1 1.4E+02 0.0029 28.3 11.6 82 28-112 92-188 (300)
129 PRK05742 nicotinate-nucleotide 60.9 56 0.0012 31.4 8.9 66 48-121 204-269 (277)
130 cd07947 DRE_TIM_Re_CS Clostrid 60.6 1.1E+02 0.0023 29.4 10.7 81 45-125 154-247 (279)
131 TIGR00640 acid_CoA_mut_C methy 60.1 64 0.0014 27.4 8.2 79 29-110 30-109 (132)
132 PRK05567 inosine 5'-monophosph 59.8 45 0.00098 34.3 8.6 66 44-110 281-357 (486)
133 PRK07259 dihydroorotate dehydr 59.8 34 0.00074 32.5 7.3 68 43-112 172-262 (301)
134 TIGR01303 IMP_DH_rel_1 IMP deh 59.7 39 0.00085 34.9 8.1 64 44-111 228-292 (475)
135 PRK13125 trpA tryptophan synth 59.5 1.1E+02 0.0024 28.3 10.5 44 68-112 169-213 (244)
136 cd04735 OYE_like_4_FMN Old yel 59.0 78 0.0017 31.1 9.8 78 33-110 228-310 (353)
137 PRK07896 nicotinate-nucleotide 58.6 49 0.0011 32.0 8.1 67 49-120 215-281 (289)
138 PRK10550 tRNA-dihydrouridine s 58.3 97 0.0021 30.1 10.2 86 28-113 63-168 (312)
139 PRK08195 4-hyroxy-2-oxovalerat 58.2 43 0.00092 32.9 7.8 76 37-112 22-107 (337)
140 PRK05437 isopentenyl pyrophosp 58.1 1.4E+02 0.0029 29.6 11.3 72 43-116 200-293 (352)
141 TIGR01302 IMP_dehydrog inosine 58.1 45 0.00097 34.0 8.1 67 44-113 227-293 (450)
142 PRK10415 tRNA-dihydrouridine s 57.8 1E+02 0.0022 30.0 10.2 82 29-112 136-223 (321)
143 PRK05718 keto-hydroxyglutarate 57.5 64 0.0014 29.7 8.3 79 27-115 15-96 (212)
144 PRK10144 formate-dependent nit 57.3 24 0.00052 30.2 5.1 53 144-213 36-88 (126)
145 cd08205 RuBisCO_IV_RLP Ribulos 57.3 49 0.0011 32.9 8.1 90 27-116 131-233 (367)
146 PRK02506 dihydroorotate dehydr 57.1 1.3E+02 0.0027 29.2 10.7 98 12-112 78-190 (310)
147 TIGR00970 leuA_yeast 2-isoprop 56.7 1.3E+02 0.0029 31.7 11.5 89 37-125 181-281 (564)
148 cd01568 QPRTase_NadC Quinolina 56.2 52 0.0011 31.3 7.7 63 51-119 199-261 (269)
149 TIGR02708 L_lactate_ox L-lacta 55.6 43 0.00093 33.5 7.3 75 43-118 239-317 (367)
150 PF01645 Glu_synthase: Conserv 55.1 58 0.0013 32.7 8.2 68 49-116 223-306 (368)
151 TIGR03217 4OH_2_O_val_ald 4-hy 55.1 56 0.0012 32.1 8.0 78 37-114 21-108 (333)
152 PRK05567 inosine 5'-monophosph 55.0 54 0.0012 33.7 8.2 67 43-112 230-296 (486)
153 cd02801 DUS_like_FMN Dihydrour 54.9 79 0.0017 28.3 8.5 70 41-112 139-212 (231)
154 cd02803 OYE_like_FMN_family Ol 54.9 1.8E+02 0.0039 27.7 11.4 77 34-112 222-310 (327)
155 cd04739 DHOD_like Dihydroorota 54.7 2.1E+02 0.0045 27.8 11.9 97 12-112 86-194 (325)
156 cd00452 KDPG_aldolase KDPG and 54.7 56 0.0012 29.0 7.3 59 45-116 68-126 (190)
157 TIGR01037 pyrD_sub1_fam dihydr 54.5 58 0.0012 30.9 7.8 67 43-111 172-261 (300)
158 TIGR02708 L_lactate_ox L-lacta 53.9 20 0.00044 35.9 4.7 40 72-113 217-256 (367)
159 PF01180 DHO_dh: Dihydroorotat 53.8 46 0.001 31.5 7.1 44 70-113 229-273 (295)
160 TIGR03572 WbuZ glycosyl amidat 53.6 54 0.0012 29.8 7.2 68 43-112 156-226 (232)
161 PRK00278 trpC indole-3-glycero 53.3 48 0.001 31.2 7.0 60 51-111 178-238 (260)
162 PRK06106 nicotinate-nucleotide 52.6 68 0.0015 31.0 8.0 64 49-120 210-273 (281)
163 cd02922 FCB2_FMN Flavocytochro 52.1 67 0.0015 31.7 8.0 75 43-117 224-304 (344)
164 PRK08508 biotin synthase; Prov 52.1 1E+02 0.0022 29.2 9.1 76 37-112 40-118 (279)
165 TIGR01306 GMP_reduct_2 guanosi 52.0 71 0.0015 31.4 8.1 79 30-113 84-165 (321)
166 TIGR00737 nifR3_yhdG putative 51.6 1.2E+02 0.0026 29.2 9.5 84 28-113 63-167 (319)
167 PRK08185 hypothetical protein; 51.4 40 0.00086 32.5 6.2 62 45-108 154-223 (283)
168 TIGR01769 GGGP geranylgeranylg 51.4 31 0.00068 31.7 5.2 57 45-109 16-72 (205)
169 PF05690 ThiG: Thiazole biosyn 51.4 58 0.0013 30.9 7.0 39 66-110 162-201 (247)
170 cd00381 IMPDH IMPDH: The catal 50.9 76 0.0016 30.9 8.1 67 43-112 96-162 (325)
171 TIGR01305 GMP_reduct_1 guanosi 50.8 1.2E+02 0.0025 30.3 9.3 85 44-129 162-259 (343)
172 PF01729 QRPTase_C: Quinolinat 50.8 33 0.00071 30.5 5.1 69 45-119 92-161 (169)
173 cd04732 HisA HisA. Phosphorib 50.8 52 0.0011 29.7 6.6 66 44-111 150-217 (234)
174 PRK14566 triosephosphate isome 50.8 55 0.0012 31.3 6.9 67 6-79 190-258 (260)
175 PRK08385 nicotinate-nucleotide 50.2 83 0.0018 30.3 8.1 67 50-120 199-266 (278)
176 cd04736 MDH_FMN Mandelate dehy 50.2 26 0.00056 35.0 4.8 41 71-113 224-264 (361)
177 cd07948 DRE_TIM_HCS Saccharomy 50.1 80 0.0017 29.8 8.0 76 37-116 19-94 (262)
178 COG0119 LeuA Isopropylmalate/h 50.1 1E+02 0.0022 31.3 9.2 87 36-122 142-232 (409)
179 PRK07107 inosine 5-monophospha 50.1 67 0.0014 33.5 8.0 64 43-110 244-309 (502)
180 TIGR00736 nifR3_rel_arch TIM-b 49.9 2.2E+02 0.0048 26.6 11.1 94 10-110 53-165 (231)
181 cd04731 HisF The cyclase subun 49.7 55 0.0012 30.0 6.7 70 44-115 153-225 (243)
182 TIGR00078 nadC nicotinate-nucl 49.5 55 0.0012 31.1 6.8 63 50-120 195-257 (265)
183 TIGR01496 DHPS dihydropteroate 49.0 1.1E+02 0.0023 28.9 8.6 76 38-116 21-105 (257)
184 PRK06015 keto-hydroxyglutarate 48.8 88 0.0019 28.7 7.7 80 26-115 3-85 (201)
185 PRK06552 keto-hydroxyglutarate 48.6 91 0.002 28.7 7.9 82 27-115 13-97 (213)
186 PRK07428 nicotinate-nucleotide 48.5 90 0.0019 30.2 8.1 66 50-120 213-278 (288)
187 PRK05458 guanosine 5'-monophos 47.9 78 0.0017 31.2 7.7 68 44-113 152-230 (326)
188 PRK05096 guanosine 5'-monophos 47.9 2.3E+02 0.005 28.3 10.9 71 36-110 104-176 (346)
189 COG3010 NanE Putative N-acetyl 47.7 1E+02 0.0022 28.9 7.9 87 27-118 67-159 (229)
190 PLN02979 glycolate oxidase 47.4 32 0.00069 34.5 5.0 40 72-113 212-251 (366)
191 cd04734 OYE_like_3_FMN Old yel 47.4 1.3E+02 0.0027 29.5 9.1 77 33-111 221-313 (343)
192 PF00478 IMPDH: IMP dehydrogen 47.2 1.1E+02 0.0025 30.4 8.8 80 26-110 95-174 (352)
193 PRK07094 biotin synthase; Prov 47.1 1.6E+02 0.0034 28.1 9.6 73 38-111 71-144 (323)
194 PLN02493 probable peroxisomal 46.8 33 0.00072 34.3 5.0 40 72-113 213-252 (367)
195 cd01573 modD_like ModD; Quinol 46.6 1.3E+02 0.0028 28.7 8.8 62 50-116 200-261 (272)
196 cd04741 DHOD_1A_like Dihydroor 46.6 2.7E+02 0.0058 26.6 11.7 98 11-112 74-192 (294)
197 PRK01130 N-acetylmannosamine-6 46.3 60 0.0013 29.3 6.3 63 47-111 133-200 (221)
198 PRK14567 triosephosphate isome 46.2 93 0.002 29.6 7.7 65 6-77 180-246 (253)
199 cd02922 FCB2_FMN Flavocytochro 46.2 30 0.00066 34.2 4.6 41 71-113 201-241 (344)
200 TIGR03151 enACPred_II putative 46.1 63 0.0014 31.2 6.7 65 46-112 122-189 (307)
201 smart00052 EAL Putative diguan 46.0 1.2E+02 0.0026 26.6 8.1 29 86-114 204-232 (241)
202 PRK02506 dihydroorotate dehydr 45.7 31 0.00067 33.3 4.5 53 60-112 216-269 (310)
203 COG1038 PycA Pyruvate carboxyl 45.5 52 0.0011 36.6 6.4 78 38-117 692-773 (1149)
204 COG2185 Sbm Methylmalonyl-CoA 45.5 1.2E+02 0.0027 26.5 7.7 81 28-110 39-119 (143)
205 COG0157 NadC Nicotinate-nucleo 45.3 1.1E+02 0.0024 29.7 8.0 67 48-120 203-269 (280)
206 TIGR00737 nifR3_yhdG putative 45.2 1.3E+02 0.0029 28.8 8.8 67 44-112 151-221 (319)
207 COG0381 WecB UDP-N-acetylgluco 45.1 5.6 0.00012 40.0 -0.7 18 280-297 276-293 (383)
208 cd04724 Tryptophan_synthase_al 44.8 2.2E+02 0.0048 26.3 9.9 41 69-112 173-214 (242)
209 TIGR00735 hisF imidazoleglycer 44.7 74 0.0016 29.6 6.8 66 43-110 158-226 (254)
210 cd00429 RPE Ribulose-5-phospha 44.7 51 0.0011 28.9 5.5 43 72-115 150-196 (211)
211 PF03716 WCCH: WCCH motif ; I 44.5 13 0.00029 22.9 1.1 14 144-157 1-14 (25)
212 PLN02535 glycolate oxidase 44.2 37 0.00081 33.9 4.9 41 71-113 211-251 (364)
213 TIGR00007 phosphoribosylformim 43.7 82 0.0018 28.4 6.8 67 43-111 148-216 (230)
214 PRK10605 N-ethylmaleimide redu 43.2 2.4E+02 0.0053 27.9 10.5 74 33-111 241-319 (362)
215 CHL00162 thiG thiamin biosynth 43.2 96 0.0021 29.8 7.2 29 86-114 190-219 (267)
216 cd07943 DRE_TIM_HOA 4-hydroxy- 43.1 1.1E+02 0.0023 28.7 7.6 76 37-116 19-108 (263)
217 PRK12581 oxaloacetate decarbox 43.1 84 0.0018 32.6 7.4 81 26-112 24-124 (468)
218 PRK15492 triosephosphate isome 42.7 1.2E+02 0.0026 28.9 7.9 65 8-79 192-258 (260)
219 PRK07565 dihydroorotate dehydr 42.6 1.2E+02 0.0026 29.4 8.1 82 28-113 167-268 (334)
220 cd04732 HisA HisA. Phosphorib 42.5 90 0.002 28.1 6.8 65 44-110 33-99 (234)
221 TIGR00259 thylakoid_BtpA membr 42.3 1.2E+02 0.0026 28.9 7.8 65 46-114 163-228 (257)
222 TIGR00284 dihydropteroate synt 41.9 2.1E+02 0.0046 29.9 10.1 85 28-115 153-237 (499)
223 PF03060 NMO: Nitronate monoox 41.9 59 0.0013 31.6 5.8 64 45-110 148-216 (330)
224 PRK06543 nicotinate-nucleotide 41.8 1.6E+02 0.0034 28.5 8.6 63 51-121 211-273 (281)
225 cd04731 HisF The cyclase subun 41.7 1E+02 0.0023 28.1 7.2 68 44-113 31-100 (243)
226 PRK02083 imidazole glycerol ph 41.5 85 0.0018 29.0 6.6 66 43-110 156-224 (253)
227 PRK14905 triosephosphate isome 41.3 1E+02 0.0023 30.7 7.5 56 31-91 215-271 (355)
228 PRK06843 inosine 5-monophospha 41.1 2.1E+02 0.0045 29.2 9.7 64 45-110 207-282 (404)
229 TIGR01302 IMP_dehydrog inosine 41.1 81 0.0018 32.1 6.9 85 45-129 278-374 (450)
230 cd00381 IMPDH IMPDH: The catal 41.1 81 0.0018 30.7 6.7 66 45-110 148-223 (325)
231 PRK05437 isopentenyl pyrophosp 40.9 1.2E+02 0.0025 30.1 7.8 80 28-113 126-217 (352)
232 PRK02261 methylaspartate mutas 40.7 2.3E+02 0.0049 24.1 9.0 64 49-113 50-120 (137)
233 PRK09016 quinolinate phosphori 40.7 1.3E+02 0.0027 29.4 7.8 66 48-121 223-288 (296)
234 PRK00043 thiE thiamine-phospha 40.5 1.2E+02 0.0025 26.8 7.1 63 48-111 119-186 (212)
235 cd04739 DHOD_like Dihydroorota 40.5 1.5E+02 0.0033 28.7 8.5 68 44-113 179-266 (325)
236 PRK06559 nicotinate-nucleotide 40.4 1.6E+02 0.0036 28.5 8.5 63 50-120 214-276 (290)
237 PRK15458 tagatose 6-phosphate 40.4 3.4E+02 0.0074 27.9 11.0 99 14-115 4-131 (426)
238 cd02811 IDI-2_FMN Isopentenyl- 40.2 1.8E+02 0.0038 28.4 8.8 80 28-113 118-209 (326)
239 PF00290 Trp_syntA: Tryptophan 40.0 1E+02 0.0022 29.4 6.9 77 29-111 143-224 (259)
240 PRK07114 keto-hydroxyglutarate 39.9 29 0.00062 32.3 3.2 45 86-133 112-169 (222)
241 COG0042 tRNA-dihydrouridine sy 39.7 1.6E+02 0.0035 28.7 8.5 83 28-111 67-170 (323)
242 PRK13111 trpA tryptophan synth 39.6 3.3E+02 0.0071 25.8 10.3 71 37-112 152-227 (258)
243 PRK06978 nicotinate-nucleotide 39.6 1.8E+02 0.0039 28.3 8.6 65 49-121 221-285 (294)
244 TIGR00262 trpA tryptophan synt 39.5 2E+02 0.0044 27.0 8.9 85 27-112 10-121 (256)
245 PTZ00314 inosine-5'-monophosph 39.4 79 0.0017 32.8 6.6 62 45-110 295-370 (495)
246 TIGR02810 agaZ_gatZ D-tagatose 39.4 3.3E+02 0.0072 27.9 10.7 104 18-126 4-136 (420)
247 PRK06015 keto-hydroxyglutarate 39.4 30 0.00066 31.7 3.2 29 86-115 97-125 (201)
248 PRK04169 geranylgeranylglycery 39.2 76 0.0017 29.7 5.9 56 45-109 24-79 (232)
249 TIGR01182 eda Entner-Doudoroff 39.1 1.3E+02 0.0027 27.7 7.2 78 27-114 8-88 (204)
250 cd04737 LOX_like_FMN L-Lactate 38.9 42 0.00091 33.3 4.3 40 72-113 210-249 (351)
251 PRK07084 fructose-bisphosphate 38.9 84 0.0018 31.0 6.3 63 44-107 168-262 (321)
252 PRK11840 bifunctional sulfur c 38.5 91 0.002 30.8 6.5 48 67-120 237-285 (326)
253 TIGR01521 FruBisAldo_II_B fruc 38.4 82 0.0018 31.4 6.2 53 43-96 174-236 (347)
254 cd00739 DHPS DHPS subgroup of 38.4 1.9E+02 0.0042 27.2 8.5 75 38-115 22-105 (257)
255 KOG1643|consensus 37.9 25 0.00053 32.9 2.3 30 45-77 216-245 (247)
256 cd00564 TMP_TenI Thiamine mono 37.8 1.3E+02 0.0029 25.6 6.9 66 46-113 108-178 (196)
257 TIGR02090 LEU1_arch isopropylm 37.8 1.6E+02 0.0034 29.1 8.2 75 37-116 19-94 (363)
258 PRK05835 fructose-bisphosphate 37.6 80 0.0017 30.9 5.9 91 4-98 111-218 (307)
259 PRK13399 fructose-1,6-bisphosp 37.5 71 0.0015 31.8 5.6 53 43-96 176-238 (347)
260 PRK01130 N-acetylmannosamine-6 37.3 1.3E+02 0.0027 27.2 6.9 63 46-112 81-145 (221)
261 TIGR01304 IMP_DH_rel_2 IMP deh 37.3 96 0.0021 31.1 6.6 29 85-113 255-284 (369)
262 cd03332 LMO_FMN L-Lactate 2-mo 37.0 53 0.0012 33.1 4.7 40 72-113 242-281 (383)
263 KOG0369|consensus 36.8 1.4E+02 0.0031 32.7 7.9 76 38-114 716-795 (1176)
264 PF01081 Aldolase: KDPG and KH 36.8 24 0.00051 32.2 2.0 50 86-136 101-162 (196)
265 cd07937 DRE_TIM_PC_TC_5S Pyruv 36.7 1.3E+02 0.0028 28.5 7.1 85 26-117 10-115 (275)
266 COG0159 TrpA Tryptophan syntha 36.3 3.5E+02 0.0075 26.1 9.9 104 16-120 6-137 (265)
267 PRK07709 fructose-bisphosphate 35.9 97 0.0021 29.9 6.2 63 43-108 159-228 (285)
268 PRK08318 dihydropyrimidine deh 35.5 1.4E+02 0.003 29.9 7.5 42 71-112 238-281 (420)
269 PF04481 DUF561: Protein of un 35.4 36 0.00079 32.0 3.0 45 85-135 61-110 (242)
270 TIGR01182 eda Entner-Doudoroff 35.4 38 0.00083 31.1 3.2 29 87-116 102-130 (204)
271 PRK11197 lldD L-lactate dehydr 35.3 57 0.0012 32.9 4.6 40 72-113 234-273 (381)
272 PTZ00413 lipoate synthase; Pro 35.2 1.8E+02 0.0039 29.6 8.1 77 36-112 176-258 (398)
273 PRK15108 biotin synthase; Prov 35.0 2E+02 0.0042 28.3 8.3 49 28-79 159-210 (345)
274 cd04726 KGPDC_HPS 3-Keto-L-gul 34.9 1.7E+02 0.0037 25.6 7.2 64 46-116 70-135 (202)
275 cd02067 B12-binding B12 bindin 34.8 2.4E+02 0.0051 22.6 8.0 66 44-110 41-106 (119)
276 cd04729 NanE N-acetylmannosami 34.6 1.2E+02 0.0027 27.3 6.4 61 49-111 139-204 (219)
277 cd02801 DUS_like_FMN Dihydrour 34.3 3.4E+02 0.0073 24.2 9.2 84 27-113 55-158 (231)
278 TIGR00343 pyridoxal 5'-phospha 34.0 56 0.0012 31.7 4.2 55 58-118 46-101 (287)
279 TIGR01036 pyrD_sub2 dihydrooro 33.6 4.4E+02 0.0096 25.8 10.5 94 12-110 123-241 (335)
280 PF01070 FMN_dh: FMN-dependent 33.3 34 0.00074 33.9 2.7 41 71-113 213-253 (356)
281 PRK00042 tpiA triosephosphate 32.9 1.6E+02 0.0034 27.9 7.0 66 7-78 182-248 (250)
282 PRK08072 nicotinate-nucleotide 32.8 1.9E+02 0.0041 27.8 7.6 63 50-120 205-267 (277)
283 COG2200 Rtn c-di-GMP phosphodi 32.6 4.1E+02 0.0089 24.7 11.0 102 12-116 106-237 (256)
284 PLN02334 ribulose-phosphate 3- 32.5 1.7E+02 0.0037 26.6 7.1 60 54-114 140-203 (229)
285 cd01948 EAL EAL domain. This d 32.5 3.3E+02 0.0071 23.8 8.8 30 85-114 202-231 (240)
286 PRK05718 keto-hydroxyglutarate 32.2 66 0.0014 29.6 4.2 32 87-119 109-140 (212)
287 cd08582 GDPD_like_2 Glyceropho 32.2 56 0.0012 29.6 3.8 33 85-117 201-233 (233)
288 cd02808 GltS_FMN Glutamate syn 32.2 2.1E+02 0.0045 28.7 8.1 74 46-119 231-320 (392)
289 TIGR00423 radical SAM domain p 32.0 4.6E+02 0.0099 25.0 10.3 9 158-166 284-292 (309)
290 cd00311 TIM Triosephosphate is 31.9 1.3E+02 0.0027 28.3 6.1 63 7-75 178-241 (242)
291 PRK05286 dihydroorotate dehydr 31.7 4.3E+02 0.0093 25.8 10.1 100 12-115 126-247 (344)
292 PLN02274 inosine-5'-monophosph 31.5 2.5E+02 0.0055 29.3 8.8 64 45-110 302-377 (505)
293 cd08563 GDPD_TtGDE_like Glycer 31.3 59 0.0013 29.4 3.8 31 85-115 200-230 (230)
294 cd02933 OYE_like_FMN Old yello 31.3 4.5E+02 0.0097 25.7 10.1 76 36-113 237-314 (338)
295 PRK02308 uvsE putative UV dama 31.2 2.1E+02 0.0046 27.7 7.7 79 31-111 114-211 (303)
296 COG0800 Eda 2-keto-3-deoxy-6-p 31.2 60 0.0013 30.2 3.7 48 88-136 108-167 (211)
297 COG2022 ThiG Uncharacterized e 31.1 1.1E+02 0.0023 29.3 5.3 37 85-121 182-219 (262)
298 TIGR00433 bioB biotin syntheta 31.0 4.1E+02 0.0089 24.7 9.5 84 37-129 184-280 (296)
299 PRK15052 D-tagatose-1,6-bispho 30.9 6E+02 0.013 26.1 11.0 105 17-126 4-137 (421)
300 TIGR00735 hisF imidazoleglycer 30.8 2.4E+02 0.0051 26.2 7.8 66 45-112 35-102 (254)
301 COG2070 Dioxygenases related t 30.8 1.3E+02 0.0027 29.8 6.2 65 47-112 141-212 (336)
302 cd04729 NanE N-acetylmannosami 30.8 1.3E+02 0.0028 27.1 5.9 63 45-111 84-148 (219)
303 PRK08610 fructose-bisphosphate 30.5 1E+02 0.0023 29.8 5.4 98 3-108 113-228 (286)
304 cd02803 OYE_like_FMN_family Ol 30.4 3.2E+02 0.007 25.9 8.8 72 44-115 145-250 (327)
305 PRK07807 inosine 5-monophospha 30.4 2E+02 0.0043 29.8 7.7 65 44-111 230-294 (479)
306 TIGR01768 GGGP-family geranylg 30.3 1E+02 0.0022 28.8 5.2 58 43-109 17-74 (223)
307 PF03918 CcmH: Cytochrome C bi 30.3 51 0.0011 28.7 3.0 34 180-213 55-88 (148)
308 PRK12738 kbaY tagatose-bisphos 30.2 1.3E+02 0.0029 29.0 6.1 101 4-108 111-227 (286)
309 cd04728 ThiG Thiazole synthase 30.2 1.8E+02 0.004 27.7 6.9 35 85-119 175-210 (248)
310 TIGR02660 nifV_homocitr homoci 30.0 2.2E+02 0.0047 28.1 7.7 75 37-116 20-95 (365)
311 PRK09613 thiH thiamine biosynt 30.0 90 0.002 32.3 5.2 42 37-78 216-258 (469)
312 cd04747 OYE_like_5_FMN Old yel 29.9 2.6E+02 0.0056 27.8 8.2 71 44-114 148-256 (361)
313 PRK01033 imidazole glycerol ph 29.8 1.7E+02 0.0038 27.3 6.7 67 43-111 155-224 (258)
314 PRK00748 1-(5-phosphoribosyl)- 29.8 1.7E+02 0.0038 26.2 6.6 66 44-111 150-218 (233)
315 PRK09195 gatY tagatose-bisphos 29.8 1.1E+02 0.0024 29.5 5.5 62 44-108 159-227 (284)
316 TIGR01303 IMP_DH_rel_1 IMP deh 29.8 3.7E+02 0.0081 27.8 9.6 80 44-126 278-372 (475)
317 COG0502 BioB Biotin synthase a 29.7 97 0.0021 30.7 5.1 70 27-97 166-239 (335)
318 PLN02716 nicotinate-nucleotide 29.5 3.6E+02 0.0079 26.5 9.0 65 52-120 228-297 (308)
319 TIGR01334 modD putative molybd 29.5 2.9E+02 0.0063 26.6 8.2 66 48-118 203-268 (277)
320 cd07939 DRE_TIM_NifV Streptomy 29.5 2.5E+02 0.0055 26.0 7.8 76 36-116 16-92 (259)
321 cd07940 DRE_TIM_IPMS 2-isoprop 29.4 2.4E+02 0.0053 26.3 7.7 75 36-115 16-95 (268)
322 PRK09140 2-dehydro-3-deoxy-6-p 29.4 2.7E+02 0.0058 25.3 7.7 78 27-113 10-90 (206)
323 PRK09454 ugpQ cytoplasmic glyc 29.3 64 0.0014 29.8 3.7 36 85-120 209-244 (249)
324 TIGR03551 F420_cofH 7,8-dideme 29.2 2.6E+02 0.0057 27.1 8.1 73 37-110 70-155 (343)
325 TIGR00736 nifR3_rel_arch TIM-b 28.6 4E+02 0.0088 24.8 8.9 83 28-112 136-219 (231)
326 PRK03739 2-isopropylmalate syn 28.4 7.3E+02 0.016 26.2 12.0 89 37-125 182-282 (552)
327 TIGR03551 F420_cofH 7,8-dideme 28.1 4.6E+02 0.0099 25.5 9.6 46 67-112 253-300 (343)
328 cd04722 TIM_phosphate_binding 27.7 1.8E+02 0.004 24.2 6.0 62 49-112 132-198 (200)
329 PRK09140 2-dehydro-3-deoxy-6-p 27.5 1.1E+02 0.0023 27.9 4.8 58 46-116 76-133 (206)
330 PLN02389 biotin synthase 27.2 2.7E+02 0.0059 27.9 7.9 77 28-106 201-292 (379)
331 PRK06552 keto-hydroxyglutarate 27.2 70 0.0015 29.4 3.5 30 86-116 109-138 (213)
332 PRK14041 oxaloacetate decarbox 27.1 2.2E+02 0.0048 29.5 7.4 84 25-114 13-116 (467)
333 PRK07695 transcriptional regul 27.1 2.8E+02 0.006 24.6 7.3 63 46-111 108-175 (201)
334 PRK00208 thiG thiazole synthas 26.9 2.2E+02 0.0048 27.1 6.8 37 85-121 175-212 (250)
335 PRK14847 hypothetical protein; 26.7 3.5E+02 0.0075 26.9 8.4 87 37-124 184-283 (333)
336 COG0149 TpiA Triosephosphate i 26.7 3.1E+02 0.0067 26.1 7.8 67 7-80 182-249 (251)
337 PRK11858 aksA trans-homoaconit 26.6 3.2E+02 0.0068 27.2 8.2 77 36-117 22-99 (378)
338 PRK14040 oxaloacetate decarbox 26.6 2.7E+02 0.006 29.7 8.2 83 25-113 15-117 (593)
339 TIGR01417 PTS_I_fam phosphoeno 26.6 5.5E+02 0.012 27.2 10.4 71 44-115 436-527 (565)
340 PRK09196 fructose-1,6-bisphosp 26.3 1.5E+02 0.0033 29.5 5.9 57 43-100 176-242 (347)
341 cd02808 GltS_FMN Glutamate syn 26.2 1.3E+02 0.0029 30.1 5.5 47 66-113 196-245 (392)
342 PF02581 TMP-TENI: Thiamine mo 26.1 1.6E+02 0.0034 25.8 5.4 63 46-110 108-174 (180)
343 TIGR01304 IMP_DH_rel_2 IMP deh 25.6 3.7E+02 0.008 27.0 8.4 64 42-111 144-214 (369)
344 cd00423 Pterin_binding Pterin 25.5 3.7E+02 0.008 25.0 8.1 75 38-115 22-105 (258)
345 cd08570 GDPD_YPL206cp_fungi Gl 25.5 86 0.0019 28.5 3.8 31 85-115 204-234 (234)
346 COG0069 GltB Glutamate synthas 25.5 3.7E+02 0.008 28.1 8.6 66 49-115 323-405 (485)
347 PF06888 Put_Phosphatase: Puta 25.4 95 0.0021 29.1 4.1 83 188-280 30-113 (234)
348 cd01567 NAPRTase_PncB Nicotina 25.3 1.4E+02 0.003 29.2 5.4 33 29-61 295-327 (343)
349 PLN02429 triosephosphate isome 25.2 2.2E+02 0.0047 28.1 6.6 43 31-78 265-308 (315)
350 TIGR03699 mena_SCO4550 menaqui 25.1 2.7E+02 0.0058 26.9 7.3 73 37-112 178-268 (340)
351 COG1646 Predicted phosphate-bi 25.0 1.8E+02 0.0039 27.6 5.8 62 40-109 28-89 (240)
352 TIGR00423 radical SAM domain p 25.0 2.7E+02 0.0058 26.6 7.2 78 37-119 142-241 (309)
353 COG0134 TrpC Indole-3-glycerol 24.9 1.2E+02 0.0027 28.9 4.7 36 75-110 197-233 (254)
354 cd07947 DRE_TIM_Re_CS Clostrid 24.9 4.3E+02 0.0094 25.2 8.5 75 37-116 18-97 (279)
355 PRK12737 gatY tagatose-bisphos 24.8 1.6E+02 0.0035 28.4 5.6 101 3-108 110-227 (284)
356 cd04724 Tryptophan_synthase_al 24.6 4.4E+02 0.0095 24.3 8.4 73 38-112 12-110 (242)
357 cd07938 DRE_TIM_HMGL 3-hydroxy 24.6 2.6E+02 0.0056 26.5 6.9 78 37-117 17-97 (274)
358 TIGR01858 tag_bisphos_ald clas 24.5 1.6E+02 0.0034 28.4 5.5 63 43-108 156-225 (282)
359 PRK13585 1-(5-phosphoribosyl)- 24.3 2.5E+02 0.0055 25.4 6.6 67 43-111 152-220 (241)
360 PRK05927 hypothetical protein; 24.3 6.3E+02 0.014 24.9 9.8 101 10-114 184-305 (350)
361 KOG3120|consensus 24.3 94 0.002 29.5 3.7 99 185-297 40-139 (256)
362 cd01568 QPRTase_NadC Quinolina 24.2 1.1E+02 0.0024 29.1 4.3 46 73-119 169-216 (269)
363 PF01116 F_bP_aldolase: Fructo 24.2 1E+02 0.0022 29.7 4.1 63 44-107 159-229 (287)
364 PRK12857 fructose-1,6-bisphosp 23.9 1.7E+02 0.0037 28.2 5.6 102 3-108 110-227 (284)
365 PF00072 Response_reg: Respons 23.8 3.2E+02 0.0069 20.5 6.9 64 43-110 33-97 (112)
366 TIGR00167 cbbA ketose-bisphosp 23.8 2E+02 0.0044 27.7 6.1 102 3-108 113-231 (288)
367 PRK12330 oxaloacetate decarbox 23.6 3E+02 0.0064 28.9 7.6 82 25-112 15-116 (499)
368 cd04733 OYE_like_2_FMN Old yel 23.1 5.3E+02 0.011 25.0 8.9 77 34-112 230-321 (338)
369 PRK07535 methyltetrahydrofolat 23.1 5.7E+02 0.012 24.1 8.9 74 39-115 24-100 (261)
370 COG0352 ThiE Thiamine monophos 23.0 3.4E+02 0.0074 25.0 7.2 66 46-113 117-186 (211)
371 cd02911 arch_FMN Archeal FMN-b 23.0 6E+02 0.013 23.4 11.2 96 10-111 57-170 (233)
372 cd08561 GDPD_cytoplasmic_ScUgp 22.8 81 0.0018 28.9 3.1 35 85-119 212-246 (249)
373 TIGR00824 EIIA-man PTS system, 22.7 3.7E+02 0.0079 22.0 6.7 60 42-102 16-78 (116)
374 PRK13587 1-(5-phosphoribosyl)- 22.5 4.5E+02 0.0097 24.3 8.0 63 43-111 151-219 (234)
375 cd08567 GDPD_SpGDE_like Glycer 22.5 1.1E+02 0.0023 28.0 3.8 32 85-116 231-262 (263)
376 cd00740 MeTr MeTr subgroup of 22.5 6.5E+02 0.014 23.6 9.4 76 38-116 24-102 (252)
377 PRK03892 ribonuclease P protei 22.5 6.5E+02 0.014 23.6 9.1 98 2-117 15-113 (216)
378 PRK00748 1-(5-phosphoribosyl)- 22.3 3.3E+02 0.0071 24.4 6.9 65 44-110 34-100 (233)
379 COG0191 Fba Fructose/tagatose 22.3 1.9E+02 0.004 28.2 5.4 64 43-108 159-229 (286)
380 cd04730 NPD_like 2-Nitropropan 22.3 5.6E+02 0.012 22.8 8.9 59 42-111 69-127 (236)
381 PRK05354 arginine decarboxylas 22.2 1.3E+02 0.0027 32.5 4.7 100 200-302 449-576 (634)
382 cd08565 GDPD_pAtGDE_like Glyce 21.8 1.1E+02 0.0024 28.1 3.7 34 85-118 201-234 (235)
383 cd08612 GDPD_GDE4 Glycerophosp 21.7 87 0.0019 29.9 3.1 35 85-119 261-295 (300)
384 PRK02083 imidazole glycerol ph 21.6 3.9E+02 0.0085 24.6 7.4 66 46-113 36-103 (253)
385 TIGR03699 mena_SCO4550 menaqui 21.5 7.3E+02 0.016 23.8 10.0 102 10-114 180-299 (340)
386 TIGR03700 mena_SCO4494 putativ 21.4 4.1E+02 0.0089 25.9 7.9 74 38-111 80-165 (351)
387 cd08579 GDPD_memb_like Glycero 21.2 1.2E+02 0.0026 27.1 3.8 31 85-115 190-220 (220)
388 PRK14429 acylphosphatase; Prov 21.2 2.3E+02 0.005 22.3 4.9 50 28-81 7-63 (90)
389 COG1304 idi Isopentenyl diphos 21.2 98 0.0021 30.9 3.4 44 72-115 260-304 (360)
390 cd02931 ER_like_FMN Enoate red 21.1 6E+02 0.013 25.3 9.0 76 34-111 246-333 (382)
391 PRK07107 inosine 5-monophospha 21.1 4.2E+02 0.0091 27.6 8.1 86 43-129 295-399 (502)
392 TIGR00510 lipA lipoate synthas 21.1 4.6E+02 0.01 25.4 8.0 74 38-111 92-171 (302)
393 TIGR01212 radical SAM protein, 21.0 2.1E+02 0.0046 27.4 5.7 23 38-60 191-213 (302)
394 PRK08444 hypothetical protein; 21.0 4.1E+02 0.0088 26.3 7.7 73 37-109 80-164 (353)
395 cd04727 pdxS PdxS is a subunit 20.9 1.3E+02 0.0029 29.2 4.1 46 60-113 46-94 (283)
396 cd08562 GDPD_EcUgpQ_like Glyce 20.9 1.2E+02 0.0026 27.1 3.7 31 85-115 199-229 (229)
397 TIGR01108 oadA oxaloacetate de 20.9 4.4E+02 0.0095 28.1 8.3 82 25-113 9-111 (582)
398 TIGR00742 yjbN tRNA dihydrouri 20.5 5.9E+02 0.013 24.8 8.6 84 28-113 55-161 (318)
399 COG0297 GlgA Glycogen synthase 20.5 2.5E+02 0.0054 29.3 6.3 79 26-112 293-374 (487)
400 cd00947 TBP_aldolase_IIB Tagat 20.4 2.3E+02 0.0051 27.2 5.7 63 44-108 152-221 (276)
401 TIGR00007 phosphoribosylformim 20.4 3.7E+02 0.008 24.1 6.9 65 44-110 32-98 (230)
402 PRK04302 triosephosphate isome 20.2 4.4E+02 0.0095 23.9 7.3 64 43-110 75-138 (223)
403 PRK07315 fructose-bisphosphate 20.2 3E+02 0.0065 26.6 6.5 62 51-113 164-232 (293)
404 PF01081 Aldolase: KDPG and KH 20.0 1.4E+02 0.0031 27.2 4.0 78 27-114 8-88 (196)
No 1
>KOG3908|consensus
Probab=100.00 E-value=3.8e-77 Score=556.11 Aligned_cols=233 Identities=57% Similarity=1.104 Sum_probs=228.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhc
Q psy14115 1 PRVAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSIN 80 (319)
Q Consensus 1 ~r~~~av~RT~rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~ 80 (319)
||+|+||.||+||+|||+.+|.+.+.|++|+|||||++.+||.+|++++.++...|+||||+|+||++.+||++|..|+.
T Consensus 162 ~rveeAM~RsIRWlDRCi~Ah~R~d~Q~lFpIiQGGLd~~LR~~c~~em~kR~~~G~AiGGLSGGEeK~~Fwr~V~~ct~ 241 (396)
T KOG3908|consen 162 PRVEEAMYRSIRWLDRCIMAHNRDDEQNLFPIIQGGLDEGLRAECIAEMLKRSVPGIAIGGLSGGEEKSEFWRMVAFCTS 241 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCccchhhhhhhhcccchHHHHHHHHHHHhcCCCceEecccCCCchHHHHHHHHHHHHc
Confidence 79999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCcCCcceeccceEEcCCcccccCCCCCCCCCCCcccCcCCHH
Q psy14115 81 CLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRA 160 (319)
Q Consensus 81 ~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~G~alt~~G~i~L~~~~~~~D~~Pi~~~C~C~tC~~~tRA 160 (319)
.||+|||||+||||+|+|++.||++|+||||||||||+||+|.||++.|.++|++.+|+.||.|||+.|.||||++||||
T Consensus 242 ~LP~dkPRYlMGVGya~DlVVCvaLG~DMfDCVyPTRTARFG~alv~~G~~~l~~~k~k~D~~pid~~C~C~tC~~ytRa 321 (396)
T KOG3908|consen 242 SLPPDKPRYLMGVGYAEDLVVCVALGSDMFDCVYPTRTARFGKALVDSGDLQLRQKKYKSDFGPIDETCGCPTCKKYTRA 321 (396)
T ss_pred cCCCCCCceeeccCcccceeeeehhCCchhhcccccchhhhccccccccceeecchhhhhcccCCCCCCCCchhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCChhHhhHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhCCCC-CCChhHhhhhhhcccccc
Q psy14115 161 YLHHIATVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMKDAYPDE-NYPRWTIDALRAVNIELT 233 (319)
Q Consensus 161 YLhHLl~~E~la~~LLtiHNl~~~~~l~~~iR~aI~~g~f~~~v~~f~~~~~~~~-~~p~~~~~~~r~~~~~~~ 233 (319)
|||||..+|..+..||++||++|+.++|+.+|+||.+++|++|++.|+..++.+. +.|+|+++|++.+||++.
T Consensus 322 ylh~l~~~etv~~~lltiHNi~yql~Lmr~vResI~~d~fp~Fvk~Fm~~~~~D~~~~p~w~rdal~~vg~~l~ 395 (396)
T KOG3908|consen 322 YLHALVGKETVGCHLLTIHNIAYQLQLMRDVRESIQEDRFPQFVKNFMASRFKDSREVPAWARDALDNVGIELD 395 (396)
T ss_pred HHHHHccccccceeeeehhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCCccCcHHHHHHHHhhccccc
Confidence 9999999999999999999999999999999999999999999999999999754 689999999999999875
No 2
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming. This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.
Probab=100.00 E-value=4.6e-69 Score=525.88 Aligned_cols=213 Identities=43% Similarity=0.775 Sum_probs=207.4
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCC-CCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhh
Q psy14115 1 PRVAIAKDRTVRWLDRCLAAHRNP-TTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSI 79 (319)
Q Consensus 1 ~r~~~av~RT~rWl~r~~~~~~~~-~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~ 79 (319)
+|+++||+||+||++||++++++. ..|++|||||||.+++||++|++++.+++++||+|||+++||++++++++|+.+.
T Consensus 151 ~~~~~av~rT~rW~~r~~~~~~~~~~~~~lfgiVqGg~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge~~~~~~~iv~~~~ 230 (368)
T TIGR00430 151 DYAEKSTERTLRWAERCLEAHDRRGNKQALFGIVQGGTYEDLRSQSAEGLIELDFPGYAIGGLSVGEPKEDMLRILEHTA 230 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCeeEEEEeCCCCCHHHHHHHHHHHHHCCCCeeEeCCccCCCCHHHHHHHHHHHH
Confidence 478999999999999999988754 4689999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCcCCcceeccceEEcCCcccccCCCCCCCCCCCcccCcCCH
Q psy14115 80 NCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTR 159 (319)
Q Consensus 80 ~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~G~alt~~G~i~L~~~~~~~D~~Pi~~~C~C~tC~~~tR 159 (319)
+.||++||||+||+|+|++|+.+|++|||||||++|++.||+|+|||++|.+||++.+|+.|++||+++|+||+|++|||
T Consensus 231 ~~lp~~kPryl~Gvg~P~~i~~~v~~GvD~FD~~~ptr~Ar~G~alt~~g~i~l~~~~~~~D~~Pi~~~C~C~tC~~~tr 310 (368)
T TIGR00430 231 PLLPKDKPRYLMGVGTPEDLLNAIRRGIDMFDCVMPTRNARNGTLFVTEGRINIKNAKYKDDTRPLDEECDCYTCKNYSR 310 (368)
T ss_pred hhCCcccceeecCCCCHHHHHHHHHcCCCEEEecCcccccCCCceECCCCcEeCCchhhhccCCCCCCCCCCccccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhh-cCChhHhhHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhCC
Q psy14115 160 AYLHHIA-TVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMKDAYP 213 (319)
Q Consensus 160 AYLhHLl-~~E~la~~LLtiHNl~~~~~l~~~iR~aI~~g~f~~~v~~f~~~~~~ 213 (319)
||||||+ ++||+|++||++||+++|.+||++||++|++|+|++|+++|+++|.+
T Consensus 311 aYLhHL~~~~E~l~~~LLt~HNl~~~~~l~~~iR~aI~~g~~~e~~~~~~~~~~~ 365 (368)
T TIGR00430 311 AYLRHLIRCNELLGARLATLHNLHFYLRLMEKIRQAILEDRFLSFRTEFLERYGE 365 (368)
T ss_pred HHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 9999999 99999999999999999999999999999999999999999998865
No 3
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.
Probab=100.00 E-value=1.6e-68 Score=522.02 Aligned_cols=213 Identities=38% Similarity=0.695 Sum_probs=206.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhc
Q psy14115 1 PRVAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSIN 80 (319)
Q Consensus 1 ~r~~~av~RT~rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~ 80 (319)
+|+++||+||+||++||++.+++.+.|++|||||||.+++||++|++++.+++++||+|||+++||+++++.++|..+.+
T Consensus 151 ~~~~~av~rT~rw~~r~~~~~~~~~~~~lfgiVqGg~~~dLR~~sa~~l~~~~~~GyaIGGl~~ge~~~~~~~~l~~~~~ 230 (367)
T TIGR00449 151 DYAEESLERTLRWAEESLEYHKRRNENALFGIVQGGTYPDLRRQSAEGLAELDFDGYAIGGVSVGEPKRDMLRILEHVAP 230 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCceEEEEecCCCCHHHHHHHHHHHhhCCCCeEEEeCcccCCCHHHHHHHHHHHHh
Confidence 47899999999999999998875445999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCcCCcceeccceEEcCCcccccCCCCCCCCCCCcccCcCCHH
Q psy14115 81 CLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRA 160 (319)
Q Consensus 81 ~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~G~alt~~G~i~L~~~~~~~D~~Pi~~~C~C~tC~~~tRA 160 (319)
.||++||||+||+|+|++|+.+|++|||||||++|++.||+|+|||++|.+||++.+|+.|++||+++|+||+|++||||
T Consensus 231 ~lP~~kPryl~Gvg~P~~i~~~v~~GvD~FD~~~ptr~Ar~G~alt~~g~~~l~~~~~~~d~~Pi~~~C~C~~C~~~sra 310 (367)
T TIGR00449 231 LLPKDKPRYLMGVGTPELLANAVSLGIDMFDCVAPTRYARNGTLLTTEGRIKIKNAKYKDDTRPLDEPCDCYVCKNYSRA 310 (367)
T ss_pred hCCcccceEecCCCCHHHHHHHHHcCCCEEeeCCccccccCCeeECCCCCccccchhhccCCCCCCCCCCCccccccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhh-cCChhHhhHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhCC
Q psy14115 161 YLHHIA-TVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMKDAYP 213 (319)
Q Consensus 161 YLhHLl-~~E~la~~LLtiHNl~~~~~l~~~iR~aI~~g~f~~~v~~f~~~~~~ 213 (319)
|||||+ ++||+|++||++||+++|.+||+.||++|++|+|++|+++|+++|..
T Consensus 311 YlhhL~~~~E~l~~~Ll~~HNl~~~~~~~~~iR~aI~~g~~~e~~~~~~~~~~~ 364 (367)
T TIGR00449 311 YLRHLIRCNELLGARLATEHNLHFSFRLIEKIRQAILEDRLLSFVEEFLEAYGR 364 (367)
T ss_pred HHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Confidence 999999 89999999999999999999999999999999999999999998753
No 4
>COG0343 Tgt Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.2e-69 Score=518.41 Aligned_cols=213 Identities=44% Similarity=0.797 Sum_probs=209.3
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhc
Q psy14115 1 PRVAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSIN 80 (319)
Q Consensus 1 ~r~~~av~RT~rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~ 80 (319)
+++++||+||.||++||++++++.+.|.+|||||||.++|||++|++++.+++++||||||+++||+++++.++|..+.+
T Consensus 151 ~~a~~s~erT~rwa~r~~~~~~~~~~~~lfgivQGg~y~dLR~~sa~~l~~l~f~gyaIGGl~vge~~~~m~~il~~~~~ 230 (372)
T COG0343 151 EYAEKSVERTLRWAERSLEAHKRLNDQALFGIVQGGTYEDLRRRSAEELNELDFDGYAIGGLSVGEPKEDMVRILEATKP 230 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCceEEEeecCCCcHHHHHHHHHHHHhCCCCceeecCccCCCCHHHHHHHHHHhhc
Confidence 47899999999999999999998668999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCcCCcceeccceEEcCCcccccCCCCCCCCCCCcccCcCCHH
Q psy14115 81 CLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRA 160 (319)
Q Consensus 81 ~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~G~alt~~G~i~L~~~~~~~D~~Pi~~~C~C~tC~~~tRA 160 (319)
.||++||||+||+|+|++|+.||++|||||||++||++||+|++||.+|.++|++.+|++|++||+++|+||+|++||||
T Consensus 231 ~Lp~~kPryLmGvG~P~~i~~aV~~GvDmFDcv~ptr~aR~g~~~t~~G~~~i~~~k~~~d~~pld~~C~C~~C~~ysRa 310 (372)
T COG0343 231 LLPEDKPRYLMGVGHPEDIVEAVALGVDMFDCVMPTRYARNGRLLTRDGRVNIRNAKLAEDTRPLDEPCSCPTCRNYSRA 310 (372)
T ss_pred cCCCCCCEEeecCCCHHHHHHHHHhCCchhhccchhhhccCCcEEeecCccccchhhhhhcCCCCCCCCCCcccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhh-cCChhHhhHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhCC
Q psy14115 161 YLHHIA-TVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMKDAYP 213 (319)
Q Consensus 161 YLhHLl-~~E~la~~LLtiHNl~~~~~l~~~iR~aI~~g~f~~~v~~f~~~~~~ 213 (319)
|||||+ ++|+++++|+++||||+|.++|++||+||.+|+|.+|+++|+++|..
T Consensus 311 yl~hL~~~~e~~~~~L~t~HNL~~~~~lm~~iR~AI~eg~f~e~~~~~~~~~~~ 364 (372)
T COG0343 311 YLRHLRRANEELGARLLTIHNLYFYLRLMKEIRQAIKEGRFLEFVEEFAEKHPR 364 (372)
T ss_pred cHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 999999 99999999999999999999999999999999999999999999876
No 5
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=100.00 E-value=4e-68 Score=519.10 Aligned_cols=209 Identities=43% Similarity=0.776 Sum_probs=203.4
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCC-CCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhh
Q psy14115 1 PRVAIAKDRTVRWLDRCLAAHRNPT-TQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSI 79 (319)
Q Consensus 1 ~r~~~av~RT~rWl~r~~~~~~~~~-~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~ 79 (319)
+|+++||+||+||++||++.+++.+ .|++|||||||.++|||++|++++.+++++||+|||+++||++++++++|+.+.
T Consensus 155 ~~~~~sv~rT~rw~~~~~~~~~~~~~~~~lfgiVQGg~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge~~~~~~~~v~~~~ 234 (366)
T PRK00112 155 DYAKKSMERTLRWAERSRDAHDRLENDQALFGIVQGGVYEDLRRESAKGLVEIDFDGYAIGGLSVGEPKEEMYRILEHTA 234 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEEeeCCccHHHHHHHHHHHHhCCCceeEeccccCCCCHHHHHHHHHHHH
Confidence 4789999999999999999887543 589999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCcCCcceeccceEEcCCcccccCCCCCCCCCCCcccCcCCH
Q psy14115 80 NCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTR 159 (319)
Q Consensus 80 ~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~G~alt~~G~i~L~~~~~~~D~~Pi~~~C~C~tC~~~tR 159 (319)
+.||++||||+||+|+|++|+.+|++|||||||++|+++||+|+|||++|.+||++.+|++|++||+++|+||+|++|||
T Consensus 235 ~~lp~~kPryl~Gvg~P~~i~~~v~~GvD~FD~~~p~r~Ar~G~alt~~g~~~l~~~~~~~d~~Pi~~~C~C~~C~~~tr 314 (366)
T PRK00112 235 PLLPEDKPRYLMGVGTPEDLVEGVARGVDMFDCVMPTRNARNGTLFTSFGRLNIRNAKYKEDTRPLDPECDCYTCRNYSR 314 (366)
T ss_pred hhCCCcCCeEecCCCCHHHHHHHHHcCCCEEeeCCccccccCCceeCCCccEECCchhhhccCCCCCCCCCCcccCccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhh-cCChhHhhHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy14115 160 AYLHHIA-TVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMK 209 (319)
Q Consensus 160 AYLhHLl-~~E~la~~LLtiHNl~~~~~l~~~iR~aI~~g~f~~~v~~f~~ 209 (319)
||||||+ ++||+|++||++||+++|.+||++||++|++|+|++|+++|+.
T Consensus 315 aYlhhL~~~~E~l~~~Ll~~HNl~~~~~~~~~iR~aI~~g~~~e~~~~~~~ 365 (366)
T PRK00112 315 AYLHHLFRAGEILGARLNTIHNLHYYQRLMEEIREAIEEGRFEEFRAEFYE 365 (366)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 9999999 8999999999999999999999999999999999999999975
No 6
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=100.00 E-value=1.9e-67 Score=513.65 Aligned_cols=198 Identities=33% Similarity=0.592 Sum_probs=192.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcC-CCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhh
Q psy14115 1 PRVAIAKDRTVRWLDRCLAAHRN-PTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSI 79 (319)
Q Consensus 1 ~r~~~av~RT~rWl~r~~~~~~~-~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~ 79 (319)
+|+++||+||+||++||++++++ ++.|++|||||||.++|||++|++++.+++++|||||| ++||++++++++|+.+.
T Consensus 171 ~~~~~sv~rT~rW~~r~~~~~~~~~~~q~lfgiVQGG~~~dLR~~Sa~~l~~~~~~GyaIGG-~vge~~~~~~~il~~~~ 249 (372)
T PRK01008 171 TYFLQSCQRTYVWEKRSLDYHLKNPRHQSMYGVIHGGIDPDQRKIGCKFVEDLPFDGSAIGG-SLGKNLQEMVEVVGVTT 249 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC-CCCCCHHHHHHHHHHHH
Confidence 47899999999999999998864 33589999999999999999999999999999999999 99999999999999999
Q ss_pred cCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCcCCcceeccceEEcCCcccccCCCCCCCCCCCcccCc-CC
Q psy14115 80 NCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCAR-YT 158 (319)
Q Consensus 80 ~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~G~alt~~G~i~L~~~~~~~D~~Pi~~~C~C~tC~~-~t 158 (319)
+.||++||||+||+|+|++|+.+|++|||||||++|+|+||+|+|||++|.+||++.+|++|++||+++|+||+|++ ||
T Consensus 250 ~~LP~~kPRyLmGvG~P~di~~~V~~GvD~FDcv~Ptr~AR~G~~lt~~G~i~i~~~~~~~d~~Pid~~C~C~~C~~~yt 329 (372)
T PRK01008 250 SNLSKERPVHLLGIGDLPSIWATVGFGIDSFDSSYPTKAARHGLILTKQGPLKINNQRYSSDLNPIEPGCSCLACSSGIS 329 (372)
T ss_pred hhCCCCCCeEEecCCCHHHHHHHHHhCCCeeeeccchhhhcCCEEEcCCCceecCchhhccCCCCCCCCCCCcCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHhhhh-cCChhHhhHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy14115 159 RAYLHHIA-TVEPSACHLLSVHNIAFQMRLMREIRESIKEQR 199 (319)
Q Consensus 159 RAYLhHLl-~~E~la~~LLtiHNl~~~~~l~~~iR~aI~~g~ 199 (319)
|||||||+ ++||+|++||++|||++|.+||++||++|++|+
T Consensus 330 raYLhHL~~~~E~l~~~LltiHNl~~~~~l~~~iR~aI~~g~ 371 (372)
T PRK01008 330 RAYLRHLFKVHEPNAGIWASIHNLHHMQQVMKEIREQILNDR 371 (372)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999 899999999999999999999999999999987
No 7
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=100.00 E-value=1.2e-64 Score=467.28 Aligned_cols=209 Identities=41% Similarity=0.800 Sum_probs=187.2
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhc
Q psy14115 1 PRVAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSIN 80 (319)
Q Consensus 1 ~r~~~av~RT~rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~ 80 (319)
+|+++||+||.+|+++|++.++...++.+|||||||.++++|++|++++.+.+++||+|||++.+++++++.++|+.+.+
T Consensus 29 k~~~~sv~rT~~w~~~~~~~~~~~~~~~l~gvIqGg~~~~lR~~s~~~l~~~~~~g~~igGl~~~~~~~~~~~~l~~i~~ 108 (238)
T PF01702_consen 29 KRAEKSVERTLRWLKECLEEHEEDKKQSLFGVIQGGDDKDLRRRSAEELSEDGFDGYAIGGLSPGEEKEERLEILEAIIN 108 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEE--TT-HHHHHHHHHHHHHSS-SEEEE-SSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcceeeeeCCCCCHHHHHHHHHHHHhcccccccccCCcCCCCHHHHHHHHHHHHh
Confidence 37899999999999999998644446899999999999999999999999988999999999999999999999999999
Q ss_pred CCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCcCCcceeccceEEcCCcccccCCCCCCCCCCCcccCcCCHH
Q psy14115 81 CLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRA 160 (319)
Q Consensus 81 ~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~G~alt~~G~i~L~~~~~~~D~~Pi~~~C~C~tC~~~tRA 160 (319)
.||++||||++|+|+|.+|+.+|++|||+|||++|++.|++|.||+++|.+||++.+|+.|++||+++|+||+|++||||
T Consensus 109 ~lp~~~pr~l~G~~~P~~i~~~v~~GvD~fDs~~p~~~A~~G~al~~~~~~~l~~~~~~~d~~pl~~~C~C~~C~~~tra 188 (238)
T PF01702_consen 109 NLPPDKPRYLLGVGTPEEILEAVYLGVDLFDSSYPTRLARHGIALTFDGTIDLRDAKYKDDFSPLEPGCSCPTCRNYTRA 188 (238)
T ss_dssp CS-TTS-EEETTB-SHHHHHHHHHTT--EEEESHHHHHHHTTEEEETTEEEETTSGGGTTS-SBSSTT--SHHHHH-BHH
T ss_pred hCCcccceeccCCCCHHHHHHHHHcCCcEEcchHHHHHHhcceeecccceEeecccccccCCCCCCCCCCCCCCcccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhh-cCChhHhhHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy14115 161 YLHHIA-TVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMK 209 (319)
Q Consensus 161 YLhHLl-~~E~la~~LLtiHNl~~~~~l~~~iR~aI~~g~f~~~v~~f~~ 209 (319)
|||||+ ++||+|++||++||+++|.+||+.||++|++|+|++|+++|++
T Consensus 189 yl~hL~~~~e~l~~~Ll~~HNl~~~~~~~~~iR~~I~~~~~~~~~~~~~r 238 (238)
T PF01702_consen 189 YLHHLLKAKEMLGPVLLSIHNLHHYLRFFKEIREAIRNGTLREFVEEFLR 238 (238)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH-
T ss_pred HHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 999999 9999999999999999999999999999999999999999985
No 8
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=100.00 E-value=4.3e-57 Score=454.38 Aligned_cols=210 Identities=25% Similarity=0.368 Sum_probs=198.1
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCC---CHHHHHHHHHH
Q psy14115 1 PRVAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGE---AKEDFWYSVLV 77 (319)
Q Consensus 1 ~r~~~av~RT~rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge---~~~e~~~ii~~ 77 (319)
+++++||+||++|+++|++.+++. .|.+|||||||.++|||++|++++.+++++||||||+++|+ +.+++.++|..
T Consensus 133 ~~~~~sv~rT~rwa~~~~~~~~~~-~~~l~giVQGg~~~dLR~~sa~~l~~~~f~gyaIGgl~~~~e~y~~~~~~~ii~~ 211 (487)
T PRK13533 133 EEAEEELEETLERLEEAAELIQDG-DMLWVAPVQGGTYPDLREESAREASKLGFDVYPIGAVVPLMERYRYDDLVDVVLA 211 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc-CccEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCcccccccCCHHHHHHHHHH
Confidence 378999999999999999987643 58999999999999999999999999999999999999997 56899999999
Q ss_pred hhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCcCCcceeccceEEcCCcccccCCCCCCCCCCCcccCcC
Q psy14115 78 SINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARY 157 (319)
Q Consensus 78 ~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~G~alt~~G~i~L~~~~~~~D~~Pi~~~C~C~tC~~~ 157 (319)
+.+.||++||||+||+|+|.+|+.+|++|||||||++|+++||+|++||++|+++|++.+|. +|+||+|++|
T Consensus 212 ~~~~Lp~dkPryL~GvG~P~~i~~~V~lGvDlFD~v~ptr~Ar~G~~lT~~G~~~l~~~~~~--------~C~C~~C~~y 283 (487)
T PRK13533 212 AKRGLGPGAPVHLFGAGHPMMFALAVALGCDLFDSAAYALYARDGRYLTVTGTYRLEDLEYL--------PCSCPVCSKY 283 (487)
T ss_pred HHhhCCCCCceEEeCCCCHHHHHHHHHhCCCceeccHHHHHHhcCeEEccCceEecccccCC--------CCCChhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999998886 7999999999
Q ss_pred CHHHHhhhhcCChhHhhHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhCCCCCCChhHhhhhhhc
Q psy14115 158 TRAYLHHIATVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMKDAYPDENYPRWTIDALRAV 228 (319)
Q Consensus 158 tRAYLhHLl~~E~la~~LLtiHNl~~~~~l~~~iR~aI~~g~f~~~v~~f~~~~~~~~~~p~~~~~~~r~~ 228 (319)
||||||||+..+ +.+||++||+++|.++|++||++|++|+|++|++++++ ..||+.+++|..
T Consensus 284 srayL~~L~~~~--~~~Ll~~HNl~~~~~~m~~iR~aI~~g~l~e~ve~r~r-------~hP~l~~~~r~l 345 (487)
T PRK13533 284 TPKELREMPAEE--RERLLAEHNLYVTFEEIRRIKQAIKEGRLWELVEERAR-------SHPSLLDAFRRL 345 (487)
T ss_pred CHHHHHhhhhcc--chhHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhh-------cCHHHHHHHHHH
Confidence 999999999555 78999999999999999999999999999999999988 478888888776
No 9
>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming. This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one.
Probab=100.00 E-value=2.6e-56 Score=452.81 Aligned_cols=211 Identities=20% Similarity=0.284 Sum_probs=196.3
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCC---HHHHHHHHHH
Q psy14115 1 PRVAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEA---KEDFWYSVLV 77 (319)
Q Consensus 1 ~r~~~av~RT~rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~---~~e~~~ii~~ 77 (319)
+++++||+||++|+++|++.+++. .|.+|||||||.++|||++|++++.+++++||+|||+.+.++ .+++.++|..
T Consensus 29 ~~a~~sverT~rwa~~~~~~~~~~-~~~l~giVQGG~~~DLR~~Sa~~l~~~~f~gyaIGG~v~~~e~y~~~~l~~iv~~ 107 (540)
T TIGR00432 29 ARAESELEITLERARESIELLEGA-ENLLNVPVQGSTHPDLRRFAAGEAAKLGGDIYPIGAVVPLMEAYRYRDLARVILE 107 (540)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-cCcEEEEEcCCCCHHHHHHHHHHHHhCCCCEEEEcCcChHhhhccHHHHHHHHHH
Confidence 378999999999999999887543 489999999999999999999999999999999999865444 5789999999
Q ss_pred hhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCcCCcceeccceEEcCCcccccCCCCCCCCCCCcccCcC
Q psy14115 78 SINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARY 157 (319)
Q Consensus 78 ~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~G~alt~~G~i~L~~~~~~~D~~Pi~~~C~C~tC~~~ 157 (319)
+.+.||++||||+||+|+|.+|+.+|++|||||||++|+++||+|++||++|+++|++.+|. +.+|+||+|++|
T Consensus 108 ~~~~LP~dkPryL~GvG~P~~i~~~V~lGvDlFD~v~ptr~Ar~G~~lT~~G~~~L~~~~~~------~~~C~C~~C~~y 181 (540)
T TIGR00432 108 SRSALPPVEPIHLFGCGHPMLFALAVALGCDLFDSAAYALYAKDDRYLTVYGTKKLEELNLQ------YFPCSCPVCSNY 181 (540)
T ss_pred HHhhCCCCcceeecCCCCHHHHHHHHHhCCCcccccHHHHHHhcCeEEccCcceehhhcccc------CCCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999998774 459999999999
Q ss_pred CHHHHhhhh-cCChhHhhHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhCCCCCCChhHhhhhhhc
Q psy14115 158 TRAYLHHIA-TVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMKDAYPDENYPRWTIDALRAV 228 (319)
Q Consensus 158 tRAYLhHLl-~~E~la~~LLtiHNl~~~~~l~~~iR~aI~~g~f~~~v~~f~~~~~~~~~~p~~~~~~~r~~ 228 (319)
||||||||. .++ .+||++||+++|.++|+.||++|++|+|++|++++++ ..||+.+++|..
T Consensus 182 srayL~hL~~~~~---~~Lla~HNL~~~~~~m~~iR~aI~~g~l~e~ve~r~R-------~hP~l~~~~r~l 243 (540)
T TIGR00432 182 TPEELRRMEKNER---ERLIAEHNLYVSFQEIETIKQAIKDGSLFELVEERVR-------AHPNLLEGYRQV 243 (540)
T ss_pred CHHHHHHhhhccH---HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-------hCHHHHHHHHHH
Confidence 999999999 454 6999999999999999999999999999999999998 578999998887
No 10
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=100.00 E-value=7.5e-55 Score=450.19 Aligned_cols=208 Identities=22% Similarity=0.338 Sum_probs=190.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHH---HHHHHHH
Q psy14115 1 PRVAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKED---FWYSVLV 77 (319)
Q Consensus 1 ~r~~~av~RT~rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e---~~~ii~~ 77 (319)
++++++|+||++|+++|++.++ .|.+|||||||.++|||++|++++.+++++||||||+.++++..+ +.++|..
T Consensus 132 ~~a~~sv~rT~~wa~~~~~~~~---~~~lfgiVQGg~~~dLR~~sa~~l~~~~f~g~aIGG~v~~~e~~~~~~lv~~i~~ 208 (639)
T PRK13534 132 EKAEEDLEETLERAKEAIEIKE---KLALNGTVQGSTYPDLRQKSAEEMSKMNFDIYPIGAVVPLMESYRYRDLVDIIIN 208 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh---cCcEEEeecCCCCHHHHHHHHHHHHhCCCCeEEEcCcchHHhhhhHHHHHHHHHH
Confidence 3789999999999999997654 289999999999999999999999999999999999876676666 4555557
Q ss_pred hhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCcCCcceeccceEEcCCcccccCCCCCCCCCCCcccCcC
Q psy14115 78 SINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARY 157 (319)
Q Consensus 78 ~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~G~alt~~G~i~L~~~~~~~D~~Pi~~~C~C~tC~~~ 157 (319)
+.+.||++||||+||+|+|.+|+.+|++|||||||++|+++||+|++||++|+++|++.+ +++|+||+|++|
T Consensus 209 ~~~~LP~dkPryL~GvG~P~~i~~~V~lGvD~FD~v~ptr~Ar~G~~lt~~G~~~l~~~~--------d~~C~C~~C~~y 280 (639)
T PRK13534 209 SKMHLPTNKPVHLFGAGHPMFFALAVALGCDLFDSAAYALYAKDDRYLTPEGTLHLEELK--------EFPCSCPVCSKY 280 (639)
T ss_pred HHhhCCCCCCeEEeCCCCHHHHHHHHHhCCCceeccHHHHHHhcCeEEecCCceeccccc--------cCCCCCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999864 459999999999
Q ss_pred CHHHHhhhhcCChhHhhHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhCCCCCCChhHhhhhhhc
Q psy14115 158 TRAYLHHIATVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMKDAYPDENYPRWTIDALRAV 228 (319)
Q Consensus 158 tRAYLhHLl~~E~la~~LLtiHNl~~~~~l~~~iR~aI~~g~f~~~v~~f~~~~~~~~~~p~~~~~~~r~~ 228 (319)
||||||||+..+ +.+||++||+++|.++|++||++|++|+|++|++++++ ..||+.+++|..
T Consensus 281 trayL~hL~~~~--~~~Ll~~HNl~~~~~~~~~iR~aI~~g~l~e~ve~~~r-------~hP~l~~~~r~~ 342 (639)
T PRK13534 281 TPKELREMPKEE--RTRLLAEHNLYVIFEEINRIKQAIKEGSLWELVEERCR-------SHPKLLEAYRRL 342 (639)
T ss_pred CHHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-------hCHHHHHHHHHH
Confidence 999999999334 78999999999999999999999999999999999988 478888888877
No 11
>KOG3909|consensus
Probab=100.00 E-value=2e-46 Score=355.53 Aligned_cols=208 Identities=32% Similarity=0.486 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC---CCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCC-CCCHHHHHHHHHH
Q psy14115 2 RVAIAKDRTVRWLDRCLAAHRNPT---TQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSG-GEAKEDFWYSVLV 77 (319)
Q Consensus 2 r~~~av~RT~rWl~r~~~~~~~~~---~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~-ge~~~e~~~ii~~ 77 (319)
|+.||||||..|.++|+.+.++.+ ...+||.+-++--..+|.+++.+-....+.||+.-|++. +++.+++.+++++
T Consensus 156 Rv~KsVDRs~~f~~~ll~~~ekvn~~~~~~i~gg~~~~dr~~~~~~~areq~~~~ygg~~f~gF~~n~~t~~~~l~lle~ 235 (414)
T KOG3909|consen 156 RVPKSVDRSVNFTTELLLALEKVNAFNTTKIFGGVPDLDRQYLTPIFAREQENQLYGGIAFLGFSNNKETDKEMLNLLEA 235 (414)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhcceeeeeeeccccCcceeeeehhhhhhhhcccccceEeeeecCCcccHHHHhhccHH
Confidence 889999999999999998887654 244555555544444566667777778899999999965 5778999999999
Q ss_pred hhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCcCCcceecc--------------ceEEcCCcccccCCC
Q psy14115 78 SINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQ--------------GQLQLKRDEYATDFT 143 (319)
Q Consensus 78 ~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~G~alt~~--------------G~i~L~~~~~~~D~~ 143 (319)
+...||++|||.+.|+-+|.+||.||..|||+||+.||+..+..|.||++. -.+|+|+++|++||+
T Consensus 236 ~~~~Lpedkpr~Isg~~~PleVLecIQrGIDlfdssfpyqate~g~AltfSfd~p~~~d~~skie~~ld~~dekfaeDft 315 (414)
T KOG3909|consen 236 DLVGLPEDKPRCISGFESPLEVLECIQRGIDLFDSSFPYQATEAGVALTFSFDPPSKDDLNSKIELGLDMWDEKFAEDFT 315 (414)
T ss_pred hhccCCCCCccccCCCCCHHHHHHHHHhccccccccchhhhhhcceEEEEccCCCchhhhhhceeeeeccchhhhhhhcc
Confidence 999999999999999999999999999999999999999999999999974 249999999999999
Q ss_pred CCCCCCCCcccCcCCHHHHhhhh-cCChhHhhHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy14115 144 PIDNQCPCSTCARYTRAYLHHIA-TVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMK 209 (319)
Q Consensus 144 Pi~~~C~C~tC~~~tRAYLhHLl-~~E~la~~LLtiHNl~~~~~l~~~iR~aI~~g~f~~~v~~f~~ 209 (319)
|+..+|.||||++|||||||||+ ++|.||++||++||+++|..||+.||+|++++++.+..+..-.
T Consensus 316 pl~sgC~CytC~kytRaYlhHLl~TrELLa~ILLm~HN~yhy~afF~~IReSl~~del~ql~Eli~~ 382 (414)
T KOG3909|consen 316 PLQSGCVCYTCRKYTRAYLHHLLQTRELLAWILLMLHNVYHYTAFFQGIRESLQEDELVQLFELIYM 382 (414)
T ss_pred ccccCcceehhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhchhHHHHHHHHh
Confidence 99999999999999999999999 9999999999999999999999999999999998887765543
No 12
>COG0343 Tgt Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.1e-27 Score=232.37 Aligned_cols=82 Identities=37% Similarity=0.629 Sum_probs=79.6
Q ss_pred ccccccccchhhhhcccceeeehhhHHHhhcCccHHHHHHhCCcccccCCCCccccCCCCceeEecccccccccCceeee
Q psy14115 236 EPCRSGLRRSLKCLQISTYLVRSETACAVGYVIGVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQ 315 (319)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~g~~~~~~~gglh~f~~w~~~ilTDSGgfQ~~sl~~~~~~~e~gv~f~ 315 (319)
.++.|++..+ +++++...||||||| ||+++||.++++.+||||+||+|++||||||||||||||++++|++|+||+|+
T Consensus 33 ~~~vk~~~~~-~l~~~ga~iil~NtY-hl~lrpg~e~v~~~gGlH~f~~w~~pilTDSGgFQv~sL~~~~~~~e~gv~f~ 110 (372)
T COG0343 33 NGTVKGMTPE-ELKELGAQIILTNTY-HLYLRPGLEIVALLGGLHKFMGWDGPILTDSGGFQVFSLGDLRKITEEGVTFK 110 (372)
T ss_pred ccccccCCHH-HHHhcCCCEEeecee-eeeeCCchhHHHHcCCHHHHhcCCCCeeecCCCceEEEcccccccccccceee
Confidence 6888988888 899999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy14115 316 SPNN 319 (319)
Q Consensus 316 s~~~ 319 (319)
||+|
T Consensus 111 s~~d 114 (372)
T COG0343 111 SHID 114 (372)
T ss_pred cccC
Confidence 9997
No 13
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=99.93 E-value=6.4e-27 Score=229.01 Aligned_cols=77 Identities=34% Similarity=0.509 Sum_probs=70.6
Q ss_pred cccccccchhhhhcccceeeehhhHHHhhcCccHHHHHHhCCcccccCCCCccccCCCCceeEecc--------------
Q psy14115 237 PCRSGLRRSLKCLQISTYLVRSETACAVGYVIGVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLL-------------- 302 (319)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~g~~~~~~~gglh~f~~w~~~ilTDSGgfQ~~sl~-------------- 302 (319)
+++||+ +.++..-||++||| ||+++||.++|+++||||+||+|++||||||||||||||.
T Consensus 40 ~~vk~l-----l~~~g~~iil~Nty-hL~lrpg~~~i~~~GGlH~fm~w~gpilTDSGgfQv~SL~~~~v~~~~~~~~~~ 113 (372)
T PRK01008 40 GALKGV-----LDHSNIPLMFCNTY-HLLVHPGTEAIAAMGGLHQFIGRNAPIITDSGGFQIFSLAYGSVAEEIKSCGKK 113 (372)
T ss_pred HHHHHH-----HHHcCCCEEEechh-hhhhCCCHHHHHHcCCHHHHhCCCCcccccCcceeEEEeccccchhhhcccccc
Confidence 467887 34577889999999 9999999999999999999999999999999999999998
Q ss_pred ----cccccccCceeeeCCCC
Q psy14115 303 ----KFAEITEEGVKFQSPNN 319 (319)
Q Consensus 303 ----~~~~~~e~gv~f~s~~~ 319 (319)
++++|+||||.|+||+|
T Consensus 114 ~~~~~~~~i~e~Gv~F~s~~d 134 (372)
T PRK01008 114 KGGSSILKITDEGVWFKSYRD 134 (372)
T ss_pred ccccccceecCCCeEEecCCC
Confidence 36799999999999987
No 14
>KOG3908|consensus
Probab=99.92 E-value=2.1e-26 Score=216.06 Aligned_cols=82 Identities=48% Similarity=0.815 Sum_probs=78.9
Q ss_pred ccccccccchhhhhcccceeeehhhHHHhhcCccHHHHHHhCCcccccCCCCccccCCCCceeEecccccccccCceeee
Q psy14115 236 EPCRSGLRRSLKCLQISTYLVRSETACAVGYVIGVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQ 315 (319)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~g~~~~~~~gglh~f~~w~~~ilTDSGgfQ~~sl~~~~~~~e~gv~f~ 315 (319)
.+++||+.-| ...+++--|+++||| ||.++||.|+++++||||+||+|+++||||||||||+||.++..|+|+||+|+
T Consensus 44 qgtmKGI~pe-qL~~l~Cri~L~NTY-HLGlrPG~E~~k~agGlh~fm~wnr~iLTDSGGFQmvSL~~l~~vtE~GV~F~ 121 (396)
T KOG3908|consen 44 QGTMKGIVPE-QLDELGCRILLGNTY-HLGLRPGHELLKKAGGLHKFMNWNRNILTDSGGFQMVSLLKLATVTEDGVRFR 121 (396)
T ss_pred ccccccccHH-HHHhcCCEEEeccce-ecccCCcHHHHHhccchHhHhcCchhheecCCCeEEEeecceeeeccCceeec
Confidence 6889999999 778888889999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy14115 316 SPNN 319 (319)
Q Consensus 316 s~~~ 319 (319)
||+|
T Consensus 122 SP~d 125 (396)
T KOG3908|consen 122 SPHD 125 (396)
T ss_pred CCCC
Confidence 9986
No 15
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming. This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.
Probab=99.91 E-value=2.1e-25 Score=218.55 Aligned_cols=82 Identities=38% Similarity=0.600 Sum_probs=78.5
Q ss_pred ccccccccchhhhhcccceeeehhhHHHhhcCccHHHHHHhCCcccccCCCCccccCCCCceeEecccccccccCceeee
Q psy14115 236 EPCRSGLRRSLKCLQISTYLVRSETACAVGYVIGVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQ 315 (319)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~g~~~~~~~gglh~f~~w~~~ilTDSGgfQ~~sl~~~~~~~e~gv~f~ 315 (319)
.+++|||-.+ ++.+++..||++||| ||+++||.++++++||||+||+|++||||||||||||||+++++++|+||.|+
T Consensus 33 ~g~vk~lt~~-~l~~~g~~~il~Nty-hl~~rpg~~~i~~~gGlh~f~~w~~~ilTDSGgfQv~sl~~~~~i~~~Gv~f~ 110 (368)
T TIGR00430 33 LGTVKGLTPE-ELEATGAEIILANTY-HLWLRPGQKIVKELGGLHKFMQWDGPILTDSGGFQVFSLSDLRKIEEEGVHFK 110 (368)
T ss_pred ccccCccCHH-HHHHcCCCeEeccHH-HHhhCCcHHHHHHhCCHHHHhCCCCceeeccCcceEEecCccccCCCCceEee
Confidence 4678999877 888999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy14115 316 SPNN 319 (319)
Q Consensus 316 s~~~ 319 (319)
||+|
T Consensus 111 s~~d 114 (368)
T TIGR00430 111 SPID 114 (368)
T ss_pred cCCC
Confidence 9986
No 16
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.
Probab=99.91 E-value=5.7e-25 Score=215.53 Aligned_cols=82 Identities=37% Similarity=0.577 Sum_probs=78.5
Q ss_pred ccccccccchhhhhcccceeeehhhHHHhhcCccHHHHHHhCCcccccCCCCccccCCCCceeEecccccccccCceeee
Q psy14115 236 EPCRSGLRRSLKCLQISTYLVRSETACAVGYVIGVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQ 315 (319)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~g~~~~~~~gglh~f~~w~~~ilTDSGgfQ~~sl~~~~~~~e~gv~f~ 315 (319)
.+++|||-.+ ++.+++..||++||| ||+++||.++++++||||+||+|++||||||||||||||++.++++|+||.|+
T Consensus 33 ~g~vk~l~~~-~l~~~g~~~il~Nty-hl~l~pg~~~i~~~gGlh~f~~w~~~ilTDSGgfQv~sl~~~~~i~~~Gv~f~ 110 (367)
T TIGR00449 33 LGTVKGLTPE-ELKKTGAQIILANTY-HLYLRPGQKIVALLGGLHKFMQWDGPILTDSGGFQVFSLGDLRKIEEEGVHFK 110 (367)
T ss_pred CCcCCcCCHH-HHHHcCCCEEecchh-hhhcCCcHHHHHHhCCHHHHcCCCCceEeccCcceeEecCcccccCCCceeee
Confidence 4788998887 888999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy14115 316 SPNN 319 (319)
Q Consensus 316 s~~~ 319 (319)
||+|
T Consensus 111 s~~d 114 (367)
T TIGR00449 111 SPID 114 (367)
T ss_pred cCCC
Confidence 9986
No 17
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=99.89 E-value=4.5e-24 Score=209.16 Aligned_cols=82 Identities=38% Similarity=0.622 Sum_probs=77.6
Q ss_pred ccccccccchhhhhcccceeeehhhHHHhhcCccHHHHHHhCCcccccCCCCccccCCCCceeEecccccccccCceeee
Q psy14115 236 EPCRSGLRRSLKCLQISTYLVRSETACAVGYVIGVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQ 315 (319)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~g~~~~~~~gglh~f~~w~~~ilTDSGgfQ~~sl~~~~~~~e~gv~f~ 315 (319)
.+++|+|-.+ ++.++...+|++||| ||+++||.++++++||||+||+|++|||||||||||+||++.++++|+||.|+
T Consensus 37 ~g~v~~lt~~-~l~~~g~~~il~nty-hl~l~pg~~~~~~~gGLh~f~~w~~~ilTDSGgfQ~~sl~~~~~~~~~Gv~f~ 114 (366)
T PRK00112 37 YGTVKGMTPE-ELKETGAQIILGNTY-HLWLRPGLEIIKKHGGLHKFMNWDGPILTDSGGFQVFSLSDLRKITEEGVTFR 114 (366)
T ss_pred CCcCCcCCHH-HHHHcCCCeEeccHH-HHhhCCcHHHHHHcCCHHHHhCCCCceeeccCcceeeeccccccCCCCceEEe
Confidence 4788888777 788888899999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy14115 316 SPNN 319 (319)
Q Consensus 316 s~~~ 319 (319)
|++|
T Consensus 115 s~~~ 118 (366)
T PRK00112 115 SHID 118 (366)
T ss_pred cCCC
Confidence 9975
No 18
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=99.79 E-value=1.5e-20 Score=195.35 Aligned_cols=81 Identities=17% Similarity=0.271 Sum_probs=73.4
Q ss_pred ccccccccchhhhhcccceeeehhhHHHhhcCccHHHHHHhCCcccccCCCCccccCCCCceeEecccccccccCceeee
Q psy14115 236 EPCRSGLRRSLKCLQISTYLVRSETACAVGYVIGVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQ 315 (319)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~g~~~~~~~gglh~f~~w~~~ilTDSGgfQ~~sl~~~~~~~e~gv~f~ 315 (319)
.+++||+--+ ++.+++.-||||||| ||+++||.+.++++||||+||+|+|||||||||||||||++..-.+|+-+.||
T Consensus 33 ~~~vk~~~~~-~l~~~g~~~il~NtY-hl~~~pg~~~~~~~gGlH~f~~w~g~ilTDSGgfQv~s~g~~~~tpe~~i~~Q 110 (639)
T PRK13534 33 NPKKQTVDPD-EIKKLGFDIVITNSY-IIYKTPELREKALEKGIHSLIGFDGPIMTDSGSFQLSVYGDVEVTNREIIEFQ 110 (639)
T ss_pred cchhcccCHH-HHHHhCCCEEEehhh-hhhhCCchhHHHhcCChHHHhCCCCCeEecCCceeeeecCccccCHHHHHHHH
Confidence 3678888777 788999999999999 99999999999999999999999999999999999999998887888888877
Q ss_pred CCC
Q psy14115 316 SPN 318 (319)
Q Consensus 316 s~~ 318 (319)
..+
T Consensus 111 ~~i 113 (639)
T PRK13534 111 EKI 113 (639)
T ss_pred HHh
Confidence 543
No 19
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=99.75 E-value=1.9e-19 Score=182.12 Aligned_cols=79 Identities=19% Similarity=0.326 Sum_probs=71.1
Q ss_pred ccccccccchhhhhcccceeeehhhHHHhhcCccHHHHHHhCCcccccCCCCccccCCCCceeEecccccccccCceeee
Q psy14115 236 EPCRSGLRRSLKCLQISTYLVRSETACAVGYVIGVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQ 315 (319)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~g~~~~~~~gglh~f~~w~~~ilTDSGgfQ~~sl~~~~~~~e~gv~f~ 315 (319)
.+++||+--+ ++++++.-||||||| ||+++ .+.++++||||+||+|+|||||||||||||||+++.-.+|+-+.||
T Consensus 36 ~~~~k~l~~~-~l~~~g~~~il~NtY-hl~~r--~~~~~~~gGlh~f~~w~g~ilTDSGgfQv~s~g~~~ltpe~~i~~Q 111 (487)
T PRK13533 36 NPNKQEISPD-ELKEFGAEILITNSY-IIYRS--LREKALEKGLHKLLGFDGPIMTDSGSYQLLVYGDVEVTNEEILEFQ 111 (487)
T ss_pred cchhcccCHH-HHHHhCCCEEEeeHH-HHHhh--hhHHHHhCCHHHHhCCCCCeEeccCCcEEEEcCCccCCHHHHHHHH
Confidence 3788988777 788999999999999 99999 7888999999999999999999999999999998887888888887
Q ss_pred CCC
Q psy14115 316 SPN 318 (319)
Q Consensus 316 s~~ 318 (319)
..|
T Consensus 112 ~~i 114 (487)
T PRK13533 112 RKI 114 (487)
T ss_pred HHh
Confidence 543
No 20
>COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=3.1e-09 Score=106.92 Aligned_cols=115 Identities=22% Similarity=0.328 Sum_probs=95.0
Q ss_pred HHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCcCCcceeccceEEcCCcccccCCCCCCCCCC
Q psy14115 71 FWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQCP 150 (319)
Q Consensus 71 ~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~G~alt~~G~i~L~~~~~~~D~~Pi~~~C~ 150 (319)
+..+........| ++.|+.|+..|.+|..+|++|||.||.++.-..|..|..||..| .
T Consensus 83 ~~~~~v~~r~~~p--~~~~~s~~~~P~~iplLvYlGvD~fD~~~~~i~~~~g~~ft~~~------~-------------- 140 (519)
T COG1549 83 FVITDVILRYRFP--KALYASGLADPENIPLLVYLGVDLFDDSLAKIYAYEGLYFTPFG------I-------------- 140 (519)
T ss_pred eeeehhhhhccCC--CceeecCCCChhhhhhHHhhCcchhhhHHHHHHHhcCccccccc------c--------------
Confidence 3334444556667 89999999999999999999999999999999999999999988 0
Q ss_pred CcccCcCCHHHHhhhhcCChhHhhHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhCCCCCCChhHhhhhhhccc
Q psy14115 151 CSTCARYTRAYLHHIATVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMKDAYPDENYPRWTIDALRAVNI 230 (319)
Q Consensus 151 C~tC~~~tRAYLhHLl~~E~la~~LLtiHNl~~~~~l~~~iR~aI~~g~f~~~v~~f~~~~~~~~~~p~~~~~~~r~~~~ 230 (319)
..+| ..+.-||..++...++.+|.+|++|+++++|+.+ . ..+|.+++||..-.
T Consensus 141 -----~~~~--------------ed~~~~n~~~l~~~l~~vr~aI~~G~LR~~VE~a-~-------~~p~~aa~lRi~D~ 193 (519)
T COG1549 141 -----SFDR--------------EDLPRDNVEFLREMLERVRRAIRNGTLRELVEKA-L-------VTPWLAAALRIADR 193 (519)
T ss_pred -----chhh--------------hhcccccHHHHHHHHHHHHHHHhcCcHHHHHHHH-h-------cCHHHHHHHHhhhH
Confidence 0122 2347799999999999999999999999999944 2 58999999998877
Q ss_pred cccc
Q psy14115 231 ELTE 234 (319)
Q Consensus 231 ~~~~ 234 (319)
+...
T Consensus 194 ~~~~ 197 (519)
T COG1549 194 EYGY 197 (519)
T ss_pred Hhhh
Confidence 6653
No 21
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=94.48 E-value=0.54 Score=43.28 Aligned_cols=89 Identities=20% Similarity=0.199 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC---CCC-hHHHHHHHHcCCcEeec
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG---IGF-AVDLLICCALGADMFDC 112 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G---vg~-P~~Il~~V~lGvD~FD~ 112 (319)
.+++.-.+-++.+.+.+++.+.+....+...++++.+++..+.+.+|. .|.-+.+ .|. ..+.+.|+..|+|.||+
T Consensus 143 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~-~~~~~H~Hn~~gla~an~laA~~aG~~~id~ 221 (265)
T cd03174 143 TDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPD-VPLGLHTHNTLGLAVANSLAALEAGADRVDG 221 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCC-CeEEEEeCCCCChHHHHHHHHHHcCCCEEEe
Confidence 788888889999999999999998887788999999999999999885 5544432 243 56789999999999999
Q ss_pred CCccccCcCCccee
Q psy14115 113 VFPTRTARFGSALV 126 (319)
Q Consensus 113 ~~Ptr~Ar~G~alt 126 (319)
+..-.-.+.|.+=+
T Consensus 222 s~~G~G~~~Gn~~~ 235 (265)
T cd03174 222 SVNGLGERAGNAAT 235 (265)
T ss_pred ccccccccccCccH
Confidence 98877766665544
No 22
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=94.13 E-value=0.48 Score=44.92 Aligned_cols=119 Identities=15% Similarity=0.149 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCceeeec---cC-CCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCC
Q psy14115 8 DRTVRWLDRCLAAHRNPTTQNIFPIV---QG-GLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLP 83 (319)
Q Consensus 8 ~RT~rWl~r~~~~~~~~~~q~lfgiV---qG-G~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP 83 (319)
+.+.+.+.++++.-++.+....+.+. .| -.+++.-.+-++.+.+.+++.+.|....+...++++.+++..+.+.+|
T Consensus 115 ~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~ 194 (273)
T cd07941 115 EENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLP 194 (273)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCC
Confidence 34445555555543333222233222 33 245666677888888899999999998888899999999999999887
Q ss_pred CCCCe--Eec-CCC-ChHHHHHHHHcCCcEeecCCccccCcCCcceec
Q psy14115 84 KDKPR--YVM-GIG-FAVDLLICCALGADMFDCVFPTRTARFGSALVR 127 (319)
Q Consensus 84 ~dkPr--~l~-Gvg-~P~~Il~~V~lGvD~FD~~~Ptr~Ar~G~alt~ 127 (319)
+.|. |.. -.| .-.+.+.++..|+|.||++..-.-.|.|.+=+.
T Consensus 195 -~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~GlGeraGn~~~e 241 (273)
T cd07941 195 -GVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTINGYGERCGNANLC 241 (273)
T ss_pred -CCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEeccccccccccccHH
Confidence 3443 332 124 255788999999999999988877777766543
No 23
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=93.92 E-value=0.79 Score=43.39 Aligned_cols=90 Identities=16% Similarity=0.071 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC---CC-ChHHHHHHHHcCCcEee
Q psy14115 36 GLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG---IG-FAVDLLICCALGADMFD 111 (319)
Q Consensus 36 G~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G---vg-~P~~Il~~V~lGvD~FD 111 (319)
+.+++.-.+.++.+.+.+++.+.|....+...++++.+++..+.+.+|++.|.-+.+ .| ...+.+.++..|+|.||
T Consensus 134 ~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd 213 (266)
T cd07944 134 GYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIID 213 (266)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEE
Confidence 367777888899999999999999998888999999999999999998777765432 34 35678999999999999
Q ss_pred cCCccccCcCCcce
Q psy14115 112 CVFPTRTARFGSAL 125 (319)
Q Consensus 112 ~~~Ptr~Ar~G~al 125 (319)
++..-.-.+.|.+=
T Consensus 214 ~s~~G~G~~aGN~~ 227 (266)
T cd07944 214 ATVYGMGRGAGNLP 227 (266)
T ss_pred EecccCCCCcCcHH
Confidence 99876666555443
No 24
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=93.88 E-value=0.88 Score=42.60 Aligned_cols=96 Identities=13% Similarity=0.046 Sum_probs=73.0
Q ss_pred ceeeeccCC-CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCe--Eec-CCCC-hHHHHHH
Q psy14115 28 NIFPIVQGG-LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPR--YVM-GIGF-AVDLLIC 102 (319)
Q Consensus 28 ~lfgiVqGG-~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr--~l~-Gvg~-P~~Il~~ 102 (319)
.-|++.-.+ .+++.-.+-++.+.+.+.+.+.|....+...++++.+++..+.+.+| .|. |.. -.|. ..+.+.+
T Consensus 126 v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~--~~l~~H~Hn~~Gla~An~laA 203 (259)
T cd07939 126 VSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATD--LPLEFHAHNDLGLATANTLAA 203 (259)
T ss_pred EEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcC--CeEEEEecCCCChHHHHHHHH
Confidence 345555444 66777788888888999999999998888999999999999998887 444 332 1232 4678999
Q ss_pred HHcCCcEeecCCccccCcCCcce
Q psy14115 103 CALGADMFDCVFPTRTARFGSAL 125 (319)
Q Consensus 103 V~lGvD~FD~~~Ptr~Ar~G~al 125 (319)
+..|+|.||++.--.-.+.|.+=
T Consensus 204 i~aG~~~vd~s~~G~G~~aGN~~ 226 (259)
T cd07939 204 VRAGATHVSVTVNGLGERAGNAA 226 (259)
T ss_pred HHhCCCEEEEecccccccccCcC
Confidence 99999999999876665555443
No 25
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=93.79 E-value=0.42 Score=49.44 Aligned_cols=87 Identities=11% Similarity=0.081 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC---CC-ChHHHHHHHHcCCcEeec
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG---IG-FAVDLLICCALGADMFDC 112 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G---vg-~P~~Il~~V~lGvD~FD~ 112 (319)
.+++.-.+-++++.+.+++-+.|....+...+++..++|..+.+.+|++.|..+.. .| ...+.+.|++.|+|.||+
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDt 231 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDT 231 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEe
Confidence 35777788899999999999999999988999999999999999998888877642 34 356799999999999999
Q ss_pred CCccccCcCCc
Q psy14115 113 VFPTRTARFGS 123 (319)
Q Consensus 113 ~~Ptr~Ar~G~ 123 (319)
+.--.-.+.|.
T Consensus 232 ai~Glg~~aGn 242 (499)
T PRK12330 232 AISSMSLGPGH 242 (499)
T ss_pred ecccccccccc
Confidence 98776555554
No 26
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=93.52 E-value=0.86 Score=43.26 Aligned_cols=88 Identities=10% Similarity=0.059 Sum_probs=70.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC---CC-ChHHHHHHHHcCCcEe
Q psy14115 35 GGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG---IG-FAVDLLICCALGADMF 110 (319)
Q Consensus 35 GG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G---vg-~P~~Il~~V~lGvD~F 110 (319)
+..+++.-.+.++++.+.+++.+.|....+...++++.+++..+.+.+| .|.-+.+ .| ...+.+.++..|+|.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~--~~l~~H~Hnd~GlA~aN~laA~~aGa~~v 221 (275)
T cd07937 144 PVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVG--LPIHLHTHDTSGLAVATYLAAAEAGVDIV 221 (275)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCC--CeEEEEecCCCChHHHHHHHHHHhCCCEE
Confidence 4467788888999999999999999998888899999999999999887 5544421 34 2557889999999999
Q ss_pred ecCCccccCcCCcc
Q psy14115 111 DCVFPTRTARFGSA 124 (319)
Q Consensus 111 D~~~Ptr~Ar~G~a 124 (319)
|++..-.-.+.|.+
T Consensus 222 d~sv~GlG~~aGN~ 235 (275)
T cd07937 222 DTAISPLSGGTSQP 235 (275)
T ss_pred EEecccccCCcCCh
Confidence 99987776665543
No 27
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=93.30 E-value=0.62 Score=42.58 Aligned_cols=96 Identities=21% Similarity=0.170 Sum_probs=70.4
Q ss_pred ceeeecc-CCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeE--ec-CCCC-hHHHHHH
Q psy14115 28 NIFPIVQ-GGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRY--VM-GIGF-AVDLLIC 102 (319)
Q Consensus 28 ~lfgiVq-GG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~--l~-Gvg~-P~~Il~~ 102 (319)
.-|+... +..+++.-.+.++.+.+.+++.+.|....+...++++.+++..+.+.+|+ .|.- .. -.|. ..+.+.+
T Consensus 124 v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~-~~l~~H~Hnd~Gla~An~laA 202 (237)
T PF00682_consen 124 VAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPD-IPLGFHAHNDLGLAVANALAA 202 (237)
T ss_dssp EEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTT-SEEEEEEBBTTS-HHHHHHHH
T ss_pred eEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccC-CeEEEEecCCccchhHHHHHH
Confidence 3555544 34677777888999999999999999988888999999999999999996 5543 32 1232 5679999
Q ss_pred HHcCCcEeecCCccccCcCCcc
Q psy14115 103 CALGADMFDCVFPTRTARFGSA 124 (319)
Q Consensus 103 V~lGvD~FD~~~Ptr~Ar~G~a 124 (319)
+..|+|.+|++.--.-.+.|.+
T Consensus 203 ~~aGa~~id~t~~GlG~~~Gn~ 224 (237)
T PF00682_consen 203 LEAGADRIDGTLGGLGERAGNA 224 (237)
T ss_dssp HHTT-SEEEEBGGGGSSTTSB-
T ss_pred HHcCCCEEEccCccCCCCCCCc
Confidence 9999999999987766666554
No 28
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=93.21 E-value=1.1 Score=42.19 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=74.0
Q ss_pred ceeeeccCC-CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCC-CCCeE--ec-CCCC-hHHHHH
Q psy14115 28 NIFPIVQGG-LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPK-DKPRY--VM-GIGF-AVDLLI 101 (319)
Q Consensus 28 ~lfgiVqGG-~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~-dkPr~--l~-Gvg~-P~~Il~ 101 (319)
..|++..++ .+++.-.+-++++.+.+++.+.+....+...++++.+++..+.+.+|. +.|.- .. ..|. -.+.+.
T Consensus 130 v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~la 209 (268)
T cd07940 130 VEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLA 209 (268)
T ss_pred EEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHH
Confidence 345555544 566666888899999999999999988888999999999999998874 35543 32 1242 457889
Q ss_pred HHHcCCcEeecCCccccCcCCcce
Q psy14115 102 CCALGADMFDCVFPTRTARFGSAL 125 (319)
Q Consensus 102 ~V~lGvD~FD~~~Ptr~Ar~G~al 125 (319)
++..|+|.||++..-.-.+.|.+=
T Consensus 210 Ai~aG~~~iD~s~~GlG~~aGN~~ 233 (268)
T cd07940 210 AVEAGARQVECTINGIGERAGNAA 233 (268)
T ss_pred HHHhCCCEEEEEeecccccccccc
Confidence 999999999999876665555443
No 29
>PLN02417 dihydrodipicolinate synthase
Probab=93.17 E-value=0.68 Score=44.00 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=63.8
Q ss_pred cCCCCHHHHHHHHHHHHhCCCceEEeCCCCC---CCCHHHHHHHHHHhhcCCCCCCCeEecCCCC--hHHHHH----HHH
Q psy14115 34 QGGLDEALRKDCAHQMVEKDVNGFAVGGLSG---GEAKEDFWYSVLVSINCLPKDKPRYVMGIGF--AVDLLI----CCA 104 (319)
Q Consensus 34 qGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~---ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~--P~~Il~----~V~ 104 (319)
.|.+|.+.-.+.++.+.+.+++|+.+.|..+ -.+.+|+.++++.+.+..+...|.+ .|+|. ..+.+. +-+
T Consensus 16 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi-~gv~~~~t~~~i~~a~~a~~ 94 (280)
T PLN02417 16 DGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVI-GNTGSNSTREAIHATEQGFA 94 (280)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEE-EECCCccHHHHHHHHHHHHH
Confidence 5788999989999999999999999999532 2467899999999888887655544 57763 445443 568
Q ss_pred cCCcEeecCCccc
Q psy14115 105 LGADMFDCVFPTR 117 (319)
Q Consensus 105 lGvD~FD~~~Ptr 117 (319)
+|+|-+=+.-|..
T Consensus 95 ~Gadav~~~~P~y 107 (280)
T PLN02417 95 VGMHAALHINPYY 107 (280)
T ss_pred cCCCEEEEcCCcc
Confidence 9999877776753
No 30
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=92.90 E-value=1.2 Score=42.34 Aligned_cols=83 Identities=13% Similarity=0.208 Sum_probs=67.4
Q ss_pred eccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEe--cC-CC-ChHHHHHHHHcCC
Q psy14115 32 IVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYV--MG-IG-FAVDLLICCALGA 107 (319)
Q Consensus 32 iVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l--~G-vg-~P~~Il~~V~lGv 107 (319)
+..|-.+++.-.+.++.+.+.+++.+.+-...+...+.++.+++..+.+.+| +.|.-+ .. .| ...+.+.++..|+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~~i~~H~Hnd~GlA~AN~laA~~aGa 219 (274)
T cd07938 141 PYEGEVPPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFP-DEKLALHFHDTRGQALANILAALEAGV 219 (274)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCC-CCeEEEEECCCCChHHHHHHHHHHhCC
Confidence 3445567888888999999999999999998888899999999999999887 455443 32 34 3668999999999
Q ss_pred cEeecCCc
Q psy14115 108 DMFDCVFP 115 (319)
Q Consensus 108 D~FD~~~P 115 (319)
|.||++.-
T Consensus 220 ~~id~t~~ 227 (274)
T cd07938 220 RRFDSSVG 227 (274)
T ss_pred CEEEEecc
Confidence 99998765
No 31
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=92.36 E-value=1.5 Score=43.14 Aligned_cols=92 Identities=18% Similarity=0.067 Sum_probs=75.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC---CC-ChHHHHHHHHcCCcEe
Q psy14115 35 GGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG---IG-FAVDLLICCALGADMF 110 (319)
Q Consensus 35 GG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G---vg-~P~~Il~~V~lGvD~F 110 (319)
+..+++.-.+.++.+.+.+.+.+.|-...+...++++.+++..+.+.+|++.|.-+.+ .| ...+.+.++..|+|.+
T Consensus 139 ~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~i 218 (337)
T PRK08195 139 HMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRI 218 (337)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEE
Confidence 4466777788888899999999999998888999999999999999998777764432 34 3668899999999999
Q ss_pred ecCCccccCcCCccee
Q psy14115 111 DCVFPTRTARFGSALV 126 (319)
Q Consensus 111 D~~~Ptr~Ar~G~alt 126 (319)
|++..-.-++.|.+=+
T Consensus 219 D~Sl~GlG~~aGN~~t 234 (337)
T PRK08195 219 DGSLAGLGAGAGNTPL 234 (337)
T ss_pred EecChhhcccccCccH
Confidence 9999888777765443
No 32
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=92.33 E-value=0.96 Score=43.01 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=62.1
Q ss_pred cCCCCHHHHHHHHHHHHhC-CCceEEeCCCCC---CCCHHHHHHHHHHhhcCCCCCCCeEecCCCC--hHHH----HHHH
Q psy14115 34 QGGLDEALRKDCAHQMVEK-DVNGFAVGGLSG---GEAKEDFWYSVLVSINCLPKDKPRYVMGIGF--AVDL----LICC 103 (319)
Q Consensus 34 qGG~~~dlR~~s~~~l~~~-~~~G~aIgGl~~---ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~--P~~I----l~~V 103 (319)
.|.+|.+.-++.++.+.+. +++|+.+.|..+ -.+.+|+.++++.+.+......|.++ |+|. ..+. -.+.
T Consensus 15 dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~via-gv~~~~~~~ai~~a~~a~ 93 (288)
T cd00954 15 NGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIA-HVGSLNLKESQELAKHAE 93 (288)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEe-ccCCCCHHHHHHHHHHHH
Confidence 4778999889999999999 999999999532 24678999999988888776556655 7753 4333 3567
Q ss_pred HcCCcEeecCCccc
Q psy14115 104 ALGADMFDCVFPTR 117 (319)
Q Consensus 104 ~lGvD~FD~~~Ptr 117 (319)
++|+|-+=..-|..
T Consensus 94 ~~Gad~v~~~~P~y 107 (288)
T cd00954 94 ELGYDAISAITPFY 107 (288)
T ss_pred HcCCCEEEEeCCCC
Confidence 89999876555543
No 33
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=92.29 E-value=1.5 Score=42.16 Aligned_cols=85 Identities=12% Similarity=0.126 Sum_probs=68.4
Q ss_pred eccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCe--EecC-CCC-hHHHHHHHHcCC
Q psy14115 32 IVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPR--YVMG-IGF-AVDLLICCALGA 107 (319)
Q Consensus 32 iVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr--~l~G-vg~-P~~Il~~V~lGv 107 (319)
+..|-.+++.-.+.++.+.+.+++.+.|....+...+.++.+++..+.+.+|. .|. |... .|. ..+.+.++..|+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~-~~i~~H~Hn~~Gla~AN~laA~~aG~ 225 (287)
T PRK05692 147 PYEGEVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPA-ERLAGHFHDTYGQALANIYASLEEGI 225 (287)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCC-CeEEEEecCCCCcHHHHHHHHHHhCC
Confidence 44556688899999999999999999999988888999999999999988873 344 3332 343 567899999999
Q ss_pred cEeecCCccc
Q psy14115 108 DMFDCVFPTR 117 (319)
Q Consensus 108 D~FD~~~Ptr 117 (319)
|.||++.--.
T Consensus 226 ~~id~s~~Gl 235 (287)
T PRK05692 226 TVFDASVGGL 235 (287)
T ss_pred CEEEEEcccc
Confidence 9999986543
No 34
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=92.09 E-value=2.2 Score=40.64 Aligned_cols=98 Identities=18% Similarity=0.190 Sum_probs=68.7
Q ss_pred HHHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCC-CceEEe---------CCCCCCCCHHHHHHHHHHhhc
Q psy14115 11 VRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKD-VNGFAV---------GGLSGGEAKEDFWYSVLVSIN 80 (319)
Q Consensus 11 ~rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~-~~G~aI---------gGl~~ge~~~e~~~ii~~~~~ 80 (319)
..|+++.....++. ...+++.|- |.+++.-.++++.+.+.+ ++++-| ||...+.+.+...++++.+++
T Consensus 77 ~~~~~~~~~~~~~~-~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~ 154 (301)
T PRK07259 77 DAFIEEELPWLEEF-DTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKE 154 (301)
T ss_pred HHHHHHHHHHHhcc-CCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHH
Confidence 35777655433322 245666665 477788888999998888 999977 566667778888999999988
Q ss_pred CCCCCCCeEe-cCC--CChHHHH-HHHHcCCcEeec
Q psy14115 81 CLPKDKPRYV-MGI--GFAVDLL-ICCALGADMFDC 112 (319)
Q Consensus 81 ~LP~dkPr~l-~Gv--g~P~~Il-~~V~lGvD~FD~ 112 (319)
.. +.|..+ ++. ....++. .+.+.|+|.++.
T Consensus 155 ~~--~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 155 VV--KVPVIVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred hc--CCCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 77 678776 443 2344555 466799998864
No 35
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=91.80 E-value=1 Score=45.51 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEec--C-CC-ChHHHHHHHHcCCcEeecCC
Q psy14115 39 EALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVM--G-IG-FAVDLLICCALGADMFDCVF 114 (319)
Q Consensus 39 ~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~--G-vg-~P~~Il~~V~lGvD~FD~~~ 114 (319)
.+...+-+++|.+++++-.+|-..++-.++.+-+++|+.+.+.+| .|..+. . .| .+...+.+|+.|+|++|++.
T Consensus 155 ~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~--~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAi 232 (472)
T COG5016 155 LEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELP--VPVELHTHATSGMAEMTYLKAVEAGVDGIDTAI 232 (472)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcC--CeeEEecccccchHHHHHHHHHHhCcchhhhhh
Confidence 456778899999999999999999999999999999999999988 666553 2 24 57789999999999999876
Q ss_pred cccc
Q psy14115 115 PTRT 118 (319)
Q Consensus 115 Ptr~ 118 (319)
..-.
T Consensus 233 sp~S 236 (472)
T COG5016 233 SPLS 236 (472)
T ss_pred cccc
Confidence 5443
No 36
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=91.76 E-value=2.6 Score=40.33 Aligned_cols=86 Identities=7% Similarity=0.008 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEe--cC-CCC-hHHHHHHHHcCCcEeec
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYV--MG-IGF-AVDLLICCALGADMFDC 112 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l--~G-vg~-P~~Il~~V~lGvD~FD~ 112 (319)
.+++.-.+.++.+.+.+++.+.|....+...+.++.+++..+.+.+| +.|.-+ .- .|. ..+.+.++..|+|.||+
T Consensus 144 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~-~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~ 222 (280)
T cd07945 144 DSPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYP-NLHFDFHAHNDYDLAVANVLAAVKAGIKGLHT 222 (280)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCC-CCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 47888888899999999999999998888899999999999988887 445433 21 342 56799999999999999
Q ss_pred CCccccCcCCc
Q psy14115 113 VFPTRTARFGS 123 (319)
Q Consensus 113 ~~Ptr~Ar~G~ 123 (319)
+.--.-.+.|.
T Consensus 223 s~~GlGe~aGN 233 (280)
T cd07945 223 TVNGLGERAGN 233 (280)
T ss_pred ecccccccccC
Confidence 87665544443
No 37
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=91.75 E-value=1.2 Score=45.53 Aligned_cols=87 Identities=15% Similarity=0.087 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC---CC-ChHHHHHHHHcCCcEeec
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG---IG-FAVDLLICCALGADMFDC 112 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G---vg-~P~~Il~~V~lGvD~FD~ 112 (319)
.+.+.-.+.++++.+.+++-+.|....+...+.+..++|..+.+.++ .|..+.+ .| ...+.+.|++.|+|+||+
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~--~pi~~H~Hnt~GlA~AN~laAieaGad~vD~ 228 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVT--VPLEVHTHATSGIAEMTYLKAIEAGADIIDT 228 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC--CeEEEEecCCCCcHHHHHHHHHHcCCCEEEe
Confidence 34566677889999999999999999888999999999999998876 6766532 34 366899999999999999
Q ss_pred CCccccCcCCcce
Q psy14115 113 VFPTRTARFGSAL 125 (319)
Q Consensus 113 ~~Ptr~Ar~G~al 125 (319)
+..--..+.|.+=
T Consensus 229 sv~glg~gaGN~~ 241 (448)
T PRK12331 229 AISPFAGGTSQPA 241 (448)
T ss_pred eccccCCCcCCHh
Confidence 9886555555443
No 38
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=91.48 E-value=2.5 Score=39.67 Aligned_cols=91 Identities=16% Similarity=0.090 Sum_probs=72.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeE--ecC-CCC-hHHHHHHHHcCCcEe
Q psy14115 35 GGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRY--VMG-IGF-AVDLLICCALGADMF 110 (319)
Q Consensus 35 GG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~--l~G-vg~-P~~Il~~V~lGvD~F 110 (319)
+..+++.-.+.++.+.+.+.+.+.|....+...++++.+++..+.+.+|. .|.- ..- .|. ..+.+.++..|+|.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~-~~l~~H~Hn~~GlA~AN~laAi~aGa~~v 214 (263)
T cd07943 136 HMASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDP-TPVGFHGHNNLGLAVANSLAAVEAGATRI 214 (263)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCC-ceEEEEecCCcchHHHHHHHHHHhCCCEE
Confidence 44678888888999999999999999988888999999999999999885 3443 331 343 557889999999999
Q ss_pred ecCCccccCcCCccee
Q psy14115 111 DCVFPTRTARFGSALV 126 (319)
Q Consensus 111 D~~~Ptr~Ar~G~alt 126 (319)
|++..-.-.+.|.+=+
T Consensus 215 d~s~~GlG~~aGN~~~ 230 (263)
T cd07943 215 DGSLAGLGAGAGNTPL 230 (263)
T ss_pred EeecccccCCcCCccH
Confidence 9998777766554433
No 39
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=91.38 E-value=1.4 Score=41.99 Aligned_cols=83 Identities=19% Similarity=0.228 Sum_probs=63.4
Q ss_pred cCCCCHHHHHHHHHHHHh-CCCceEEeCCCCC---CCCHHHHHHHHHHhhcCCCCCCCeEecCCCC--hHHH----HHHH
Q psy14115 34 QGGLDEALRKDCAHQMVE-KDVNGFAVGGLSG---GEAKEDFWYSVLVSINCLPKDKPRYVMGIGF--AVDL----LICC 103 (319)
Q Consensus 34 qGG~~~dlR~~s~~~l~~-~~~~G~aIgGl~~---ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~--P~~I----l~~V 103 (319)
.|.+|.+--++.++.+.+ .+++|+.+.|..+ -.+.+|+.++++.+.+..+...|.+. |+|. ..+. -.+.
T Consensus 18 dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~via-gvg~~~t~~ai~~a~~a~ 96 (293)
T PRK04147 18 DGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIA-QVGSVNTAEAQELAKYAT 96 (293)
T ss_pred CCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEe-cCCCCCHHHHHHHHHHHH
Confidence 477888888899999999 9999999999532 24789999999999988886666554 7764 4443 4567
Q ss_pred HcCCcEeecCCccc
Q psy14115 104 ALGADMFDCVFPTR 117 (319)
Q Consensus 104 ~lGvD~FD~~~Ptr 117 (319)
++|+|-+=+.-|..
T Consensus 97 ~~Gad~v~v~~P~y 110 (293)
T PRK04147 97 ELGYDAISAVTPFY 110 (293)
T ss_pred HcCCCEEEEeCCcC
Confidence 89999877666653
No 40
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=91.30 E-value=2.4 Score=42.04 Aligned_cols=84 Identities=12% Similarity=0.163 Sum_probs=67.1
Q ss_pred eccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCC-CCeEecC-CCC-hHHHHHHHHcCCc
Q psy14115 32 IVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKD-KPRYVMG-IGF-AVDLLICCALGAD 108 (319)
Q Consensus 32 iVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~d-kPr~l~G-vg~-P~~Il~~V~lGvD 108 (319)
+..|-.+++.-.+-++++.+.+++-+.|....+...+.++.+++..+.+.+|.. --.|... .|. ..+.+.++..|+|
T Consensus 189 p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~ 268 (347)
T PLN02746 189 PIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGIS 268 (347)
T ss_pred CccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCCC
Confidence 334557888889999999999999999999988889999999999999888731 1234432 243 5689999999999
Q ss_pred EeecCCc
Q psy14115 109 MFDCVFP 115 (319)
Q Consensus 109 ~FD~~~P 115 (319)
.||++.-
T Consensus 269 ~vd~sv~ 275 (347)
T PLN02746 269 TVDSSVA 275 (347)
T ss_pred EEEEecc
Confidence 9998864
No 41
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=91.06 E-value=1.7 Score=40.98 Aligned_cols=83 Identities=19% Similarity=0.234 Sum_probs=64.2
Q ss_pred cCCCCHHHHHHHHHHHHhCCCceEEeCCCCC---CCCHHHHHHHHHHhhcCCCCCCCeEecCCCC--hHHHH----HHHH
Q psy14115 34 QGGLDEALRKDCAHQMVEKDVNGFAVGGLSG---GEAKEDFWYSVLVSINCLPKDKPRYVMGIGF--AVDLL----ICCA 104 (319)
Q Consensus 34 qGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~---ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~--P~~Il----~~V~ 104 (319)
.|.+|.+.-.+.++.+.+.+++|+.+.|..+ ..+.+|+.++++.+.+......|.+ .|+|. ..+.+ .+..
T Consensus 15 dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi-~gv~~~~~~~~~~~a~~a~~ 93 (284)
T cd00950 15 DGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVI-AGTGSNNTAEAIELTKRAEK 93 (284)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEE-eccCCccHHHHHHHHHHHHH
Confidence 5678999999999999999999999998532 3578899999999888887656655 57763 44433 4667
Q ss_pred cCCcEeecCCccc
Q psy14115 105 LGADMFDCVFPTR 117 (319)
Q Consensus 105 lGvD~FD~~~Ptr 117 (319)
+|+|-+=...|..
T Consensus 94 ~G~d~v~~~~P~~ 106 (284)
T cd00950 94 AGADAALVVTPYY 106 (284)
T ss_pred cCCCEEEEccccc
Confidence 9999887777754
No 42
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=91.05 E-value=1.6 Score=42.07 Aligned_cols=83 Identities=18% Similarity=0.145 Sum_probs=64.0
Q ss_pred cCCCCHHHHHHHHHHHHhCCCceEEeCCCCC---CCCHHHHHHHHHHhhcCCCCCCCeEecCCC--ChHHHH----HHHH
Q psy14115 34 QGGLDEALRKDCAHQMVEKDVNGFAVGGLSG---GEAKEDFWYSVLVSINCLPKDKPRYVMGIG--FAVDLL----ICCA 104 (319)
Q Consensus 34 qGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~---ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg--~P~~Il----~~V~ 104 (319)
+|.+|.+.-.+-++.+.+.+++|+.+.|..+ -.+.+|+.++++.+.+......|.+ .|+| +..+.+ .+-+
T Consensus 23 ~g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi-~Gv~~~~t~~ai~~a~~A~~ 101 (309)
T cd00952 23 TDTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVF-VGATTLNTRDTIARTRALLD 101 (309)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEE-EEeccCCHHHHHHHHHHHHH
Confidence 4789999889999999999999999988532 2478999999999998887667765 4775 355544 4557
Q ss_pred cCCcEeecCCccc
Q psy14115 105 LGADMFDCVFPTR 117 (319)
Q Consensus 105 lGvD~FD~~~Ptr 117 (319)
+|+|-+=..-|..
T Consensus 102 ~Gad~vlv~~P~y 114 (309)
T cd00952 102 LGADGTMLGRPMW 114 (309)
T ss_pred hCCCEEEECCCcC
Confidence 8999887777753
No 43
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=91.02 E-value=3.3 Score=39.24 Aligned_cols=88 Identities=14% Similarity=0.039 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC---CCC-hHHHHHHHHcCCcEeec
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG---IGF-AVDLLICCALGADMFDC 112 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G---vg~-P~~Il~~V~lGvD~FD~ 112 (319)
.+++--.+.++.+.+.+.+.+.+....+...++++.+++..+.+.+| .|.-+.+ .|. -.+.+.++..|+|.||+
T Consensus 138 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~--~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~ 215 (262)
T cd07948 138 SDLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVS--CDIEFHGHNDTGCAIANAYAALEAGATHIDT 215 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcC--CeEEEEECCCCChHHHHHHHHHHhCCCEEEE
Confidence 55666677888888899999999998888899999999999998887 5543321 232 45788999999999999
Q ss_pred CCccccCcCCccee
Q psy14115 113 VFPTRTARFGSALV 126 (319)
Q Consensus 113 ~~Ptr~Ar~G~alt 126 (319)
+.--.-.|.|.+=+
T Consensus 216 s~~GlGeraGn~~~ 229 (262)
T cd07948 216 TVLGIGERNGITPL 229 (262)
T ss_pred eccccccccCCccH
Confidence 98888887777643
No 44
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=90.86 E-value=0.9 Score=39.36 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=55.9
Q ss_pred eeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCCh----------HHH
Q psy14115 30 FPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFA----------VDL 99 (319)
Q Consensus 30 fgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P----------~~I 99 (319)
+++.+|-.+.+.-.+.++.+.+.+++|+.+.| ++++.+.+..+..+...+.|+|.+ ..+
T Consensus 3 ~~~~~~~~d~~~~~~~~~~~~~~gv~gi~~~g-----------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a 71 (201)
T cd00945 3 LTLLHPDATLEDIAKLCDEAIEYGFAAVCVNP-----------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEV 71 (201)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCcEEEECH-----------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHH
Confidence 45566655778888889999999999999998 455556666664244555677665 345
Q ss_pred HHHHHcCCcEeecCCccc
Q psy14115 100 LICCALGADMFDCVFPTR 117 (319)
Q Consensus 100 l~~V~lGvD~FD~~~Ptr 117 (319)
-.+.++|+|.+...-|..
T Consensus 72 ~~a~~~Gad~i~v~~~~~ 89 (201)
T cd00945 72 EEAIDLGADEIDVVINIG 89 (201)
T ss_pred HHHHHcCCCEEEEeccHH
Confidence 678899999999876653
No 45
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=90.62 E-value=0.78 Score=43.44 Aligned_cols=83 Identities=22% Similarity=0.271 Sum_probs=59.3
Q ss_pred cCCCCHHHHHHHHHHHHhCCCceEEeCCCCC---CCCHHHHHHHHHHhhcCCCCCCCeEecCCC--ChHH----HHHHHH
Q psy14115 34 QGGLDEALRKDCAHQMVEKDVNGFAVGGLSG---GEAKEDFWYSVLVSINCLPKDKPRYVMGIG--FAVD----LLICCA 104 (319)
Q Consensus 34 qGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~---ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg--~P~~----Il~~V~ 104 (319)
.|.+|.+.-++-++.+.+.+++|+.+.|..+ -.+.+|+.++++.+.+..+...|.++ |+| +-.+ .-.+.+
T Consensus 16 dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~-gv~~~st~~~i~~a~~a~~ 94 (289)
T PF00701_consen 16 DGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIA-GVGANSTEEAIELARHAQD 94 (289)
T ss_dssp TSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEE-EEESSSHHHHHHHHHHHHH
T ss_pred CcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEe-cCcchhHHHHHHHHHHHhh
Confidence 3668888888999999999999999999632 24678999999999888887666555 775 3333 335668
Q ss_pred cCCcEeecCCccc
Q psy14115 105 LGADMFDCVFPTR 117 (319)
Q Consensus 105 lGvD~FD~~~Ptr 117 (319)
+|+|-+-..-|..
T Consensus 95 ~Gad~v~v~~P~~ 107 (289)
T PF00701_consen 95 AGADAVLVIPPYY 107 (289)
T ss_dssp TT-SEEEEEESTS
T ss_pred cCceEEEEecccc
Confidence 9999765554533
No 46
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=90.53 E-value=1.9 Score=44.40 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC---CC-ChHHHHHHHHcCCcEeec
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG---IG-FAVDLLICCALGADMFDC 112 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G---vg-~P~~Il~~V~lGvD~FD~ 112 (319)
...+--.+.++++.+.+++-+.|....+...+.+..+++..+.+.+| .|..+.+ .| ...+.+.|++.|+|.||+
T Consensus 150 ~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~--vpI~~H~Hnt~GlA~AN~laAieaGad~vD~ 227 (467)
T PRK14041 150 HTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFG--VPVEVHSHCTTGLASLAYLAAVEAGADMFDT 227 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcC--CceEEEecCCCCcHHHHHHHHHHhCCCEEEe
Confidence 34567778889999999999999999888999999999999998886 6766542 35 366899999999999999
Q ss_pred CCccccCcCC
Q psy14115 113 VFPTRTARFG 122 (319)
Q Consensus 113 ~~Ptr~Ar~G 122 (319)
+..--..+.|
T Consensus 228 sv~~~g~gag 237 (467)
T PRK14041 228 AISPFSMGTS 237 (467)
T ss_pred eccccCCCCC
Confidence 9875555545
No 47
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=90.31 E-value=1.7 Score=41.57 Aligned_cols=82 Identities=20% Similarity=0.302 Sum_probs=60.5
Q ss_pred cCCCCHHHHHHHHHHHHhCCCceEEeCCCCC---CCCHHHHHHHHHHhhcCCCCCCCeEecCCCC-hHHH----HHHHHc
Q psy14115 34 QGGLDEALRKDCAHQMVEKDVNGFAVGGLSG---GEAKEDFWYSVLVSINCLPKDKPRYVMGIGF-AVDL----LICCAL 105 (319)
Q Consensus 34 qGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~---ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~-P~~I----l~~V~l 105 (319)
.|.+|.+.-++-++.+.+.+++|+.+.|..+ -.+.+|+.++++.+.+......|.++ |+|. ..+. -.+.++
T Consensus 20 dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~-gv~~~t~~ai~~a~~a~~~ 98 (296)
T TIGR03249 20 DGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYT-GVGGNTSDAIEIARLAEKA 98 (296)
T ss_pred CCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEE-ecCccHHHHHHHHHHHHHh
Confidence 4678888888899999999999999998532 35788999999999888877677654 6663 2222 234569
Q ss_pred CCcEeecCCcc
Q psy14115 106 GADMFDCVFPT 116 (319)
Q Consensus 106 GvD~FD~~~Pt 116 (319)
|+|-+=..-|.
T Consensus 99 Gadav~~~pP~ 109 (296)
T TIGR03249 99 GADGYLLLPPY 109 (296)
T ss_pred CCCEEEECCCC
Confidence 99976555554
No 48
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=90.28 E-value=1.4 Score=42.49 Aligned_cols=89 Identities=20% Similarity=0.268 Sum_probs=64.9
Q ss_pred cCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCC----CHHHHHHHHHHhhcCCCCCCCeEecCCCCh--HH----HHHHH
Q psy14115 34 QGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGE----AKEDFWYSVLVSINCLPKDKPRYVMGIGFA--VD----LLICC 103 (319)
Q Consensus 34 qGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge----~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P--~~----Il~~V 103 (319)
+|..|.+.-.+.++.+.+.+++|+.+.|. .|| +.+|..++++.+.+..-...| .+.|+|.. .+ .-.+-
T Consensus 19 dg~vD~~a~~~lv~~li~~Gv~gi~~~Gt-tGE~~~Ls~eEr~~v~~~~v~~~~grvp-viaG~g~~~t~eai~lak~a~ 96 (299)
T COG0329 19 DGSVDEEALRRLVEFLIAAGVDGLVVLGT-TGESPTLTLEERKEVLEAVVEAVGGRVP-VIAGVGSNSTAEAIELAKHAE 96 (299)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCC-CccchhcCHHHHHHHHHHHHHHHCCCCc-EEEecCCCcHHHHHHHHHHHH
Confidence 48899999999999999999999999995 444 578999999988888766666 55588754 22 22455
Q ss_pred HcCCcEe--ecCCccccCcCCcc
Q psy14115 104 ALGADMF--DCVFPTRTARFGSA 124 (319)
Q Consensus 104 ~lGvD~F--D~~~Ptr~Ar~G~a 124 (319)
++|+|-+ -.+|.++....|.+
T Consensus 97 ~~Gad~il~v~PyY~k~~~~gl~ 119 (299)
T COG0329 97 KLGADGILVVPPYYNKPSQEGLY 119 (299)
T ss_pred hcCCCEEEEeCCCCcCCChHHHH
Confidence 7999955 45555555544443
No 49
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=90.11 E-value=1.9 Score=45.65 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC---CC-ChHHHHHHHHcCCcEeec
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG---IG-FAVDLLICCALGADMFDC 112 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G---vg-~P~~Il~~V~lGvD~FD~ 112 (319)
.+.+.-.+.++++.+.+++-+.|-...+...+++..+++..+.+.++ .|..+.. .| ...+.+.|+..|+|++|+
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~--~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ 228 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVD--LPVQLHSHCTSGLAPMTYLKAVEAGVDIIDT 228 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCC--CeEEEEEcCCCCcHHHHHHHHHHhCCCEEEe
Confidence 35678888999999999999999999999999999999999998886 6665532 34 366899999999999999
Q ss_pred CCccccCcCCc
Q psy14115 113 VFPTRTARFGS 123 (319)
Q Consensus 113 ~~Ptr~Ar~G~ 123 (319)
+..-...+-|.
T Consensus 229 ai~g~g~~agn 239 (592)
T PRK09282 229 AISPLAFGTSQ 239 (592)
T ss_pred eccccCCCcCC
Confidence 98865555553
No 50
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=89.91 E-value=1.8 Score=45.86 Aligned_cols=88 Identities=8% Similarity=-0.011 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC---CCC-hHHHHHHHHcCCcEeec
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG---IGF-AVDLLICCALGADMFDC 112 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G---vg~-P~~Il~~V~lGvD~FD~ 112 (319)
...+.-.+-++++.+.+++-+.|-...+...+++..+++..+.+.++ .|..+.+ .|. ..+.+.|+..|+|+||+
T Consensus 151 ~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~--ipi~~H~Hnt~Gla~an~laAieaGad~iD~ 228 (596)
T PRK14042 151 HTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATG--LPVHLHSHSTSGLASICHYEAVLAGCNHIDT 228 (596)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcC--CEEEEEeCCCCCcHHHHHHHHHHhCCCEEEe
Confidence 56777888899999999999999999888999999999999998874 7766542 242 67899999999999999
Q ss_pred CCccccCcCCccee
Q psy14115 113 VFPTRTARFGSALV 126 (319)
Q Consensus 113 ~~Ptr~Ar~G~alt 126 (319)
+..-.-.+-|.+=+
T Consensus 229 ai~glGg~tGn~~t 242 (596)
T PRK14042 229 AISSFSGGASHPPT 242 (596)
T ss_pred ccccccCCCCcHhH
Confidence 99888777765543
No 51
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=89.87 E-value=2.4 Score=40.25 Aligned_cols=83 Identities=19% Similarity=0.254 Sum_probs=64.3
Q ss_pred cCCCCHHHHHHHHHHHHhCCCceEEeCCCCC---CCCHHHHHHHHHHhhcCCCCCCCeEecCCCC--hHHHH----HHHH
Q psy14115 34 QGGLDEALRKDCAHQMVEKDVNGFAVGGLSG---GEAKEDFWYSVLVSINCLPKDKPRYVMGIGF--AVDLL----ICCA 104 (319)
Q Consensus 34 qGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~---ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~--P~~Il----~~V~ 104 (319)
.|.+|.+.-++.++.+.+.+++|+.+.|..+ -.+.+|+.++++.+.+..+...|.+ .|+|. ..+.+ .+..
T Consensus 16 dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi-~gv~~~~~~~~i~~a~~a~~ 94 (292)
T PRK03170 16 DGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVI-AGTGSNSTAEAIELTKFAEK 94 (292)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEE-eecCCchHHHHHHHHHHHHH
Confidence 5678889889999999999999999888532 2578999999999998887767755 57753 44443 4557
Q ss_pred cCCcEeecCCccc
Q psy14115 105 LGADMFDCVFPTR 117 (319)
Q Consensus 105 lGvD~FD~~~Ptr 117 (319)
+|+|-+=..-|..
T Consensus 95 ~G~d~v~~~pP~~ 107 (292)
T PRK03170 95 AGADGALVVTPYY 107 (292)
T ss_pred cCCCEEEECCCcC
Confidence 8999887777764
No 52
>PHA01745 hypothetical protein
Probab=89.69 E-value=0.23 Score=47.59 Aligned_cols=98 Identities=14% Similarity=0.064 Sum_probs=69.7
Q ss_pred CceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCC---CHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHH
Q psy14115 27 QNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGE---AKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICC 103 (319)
Q Consensus 27 q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge---~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V 103 (319)
..+.++++. ++.+.-.++++...+ =.+-.|+||+.+-. +...-++++..++... ++.|++|+|+|.-+...
T Consensus 101 ~~vIPViH~-Y~~e~l~~~ldfysq-y~d~iAfGG~Vp~s~~~sr~~a~~~y~~vRk~~---~~LHvLG~gSP~~~pil- 174 (306)
T PHA01745 101 ERIIPVIHL-YPVREVDEAIDFYSQ-YTDYIAFGGIVASSKLKILIYAFPWYYYIRKYV---KRLHVLGMSAPYFRQVF- 174 (306)
T ss_pred cceeeEEee-cCHHHHHHHHHHHHh-hhhhhhccccccHHhhhhHHHHHHHHHHHHHHh---hhhhccccCCchheeee-
Confidence 358888886 666666666666554 24478899985421 1222244556666632 45799999999887766
Q ss_pred HcCCcEeecCCccccCcCCcceeccceE
Q psy14115 104 ALGADMFDCVFPTRTARFGSALVRQGQL 131 (319)
Q Consensus 104 ~lGvD~FD~~~Ptr~Ar~G~alt~~G~i 131 (319)
+|+|..|++--...|-.|..+-|.|.-
T Consensus 175 -~~vdS~DTsTwr~KAaygkVilpGgge 201 (306)
T PHA01745 175 -YDADSMDTSTYTVKAIHREIFWFDGTR 201 (306)
T ss_pred -eccccccchhhhhhhhcceEecCCCce
Confidence 899999999889999999999987643
No 53
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=89.46 E-value=2.3 Score=44.94 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC---CC-ChHHHHHHHHcCCcEeecC
Q psy14115 38 DEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG---IG-FAVDLLICCALGADMFDCV 113 (319)
Q Consensus 38 ~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G---vg-~P~~Il~~V~lGvD~FD~~ 113 (319)
+.+.-.+.++++.+.+.+.+.|-...+...+.+..+++..+.+.+| .|..+.. .| ...+.+.|+..|+|.||++
T Consensus 147 ~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~--~pi~~H~Hnt~Gla~An~laAveaGa~~vd~a 224 (582)
T TIGR01108 147 TLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFG--LPVHLHSHATTGMAEMALLKAIEAGADGIDTA 224 (582)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCC--CceEEEecCCCCcHHHHHHHHHHhCCCEEEec
Confidence 5677888899999999999999999999999999999999998886 6665532 34 3567999999999999999
Q ss_pred CccccCcCCccee
Q psy14115 114 FPTRTARFGSALV 126 (319)
Q Consensus 114 ~Ptr~Ar~G~alt 126 (319)
.--.-.+-|.+=+
T Consensus 225 i~GlG~~tGn~~l 237 (582)
T TIGR01108 225 ISSMSGGTSHPPT 237 (582)
T ss_pred cccccccccChhH
Confidence 9888777775543
No 54
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=89.32 E-value=2.6 Score=39.49 Aligned_cols=85 Identities=20% Similarity=0.247 Sum_probs=63.6
Q ss_pred cCCCCHHHHHHHHHHHHhCCCceEEeCCCCC---CCCHHHHHHHHHHhhcCCCCCCCeEecCCCC--hHHHH----HHHH
Q psy14115 34 QGGLDEALRKDCAHQMVEKDVNGFAVGGLSG---GEAKEDFWYSVLVSINCLPKDKPRYVMGIGF--AVDLL----ICCA 104 (319)
Q Consensus 34 qGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~---ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~--P~~Il----~~V~ 104 (319)
.|.+|.+.-++.++.+.+.+++|+.+.|..+ ..+.+|+.++++.+.+......|.+ .|+|. ..+.+ .+-.
T Consensus 12 dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi-~gv~~~~~~~~i~~a~~a~~ 90 (281)
T cd00408 12 DGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVI-AGVGANSTREAIELARHAEE 90 (281)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEE-EecCCccHHHHHHHHHHHHH
Confidence 4678989889999999999999999999532 2467899999999988887556655 57764 33322 4567
Q ss_pred cCCcEeecCCccccC
Q psy14115 105 LGADMFDCVFPTRTA 119 (319)
Q Consensus 105 lGvD~FD~~~Ptr~A 119 (319)
+|+|-+=..-|....
T Consensus 91 ~Gad~v~v~pP~y~~ 105 (281)
T cd00408 91 AGADGVLVVPPYYNK 105 (281)
T ss_pred cCCCEEEECCCcCCC
Confidence 899987777776544
No 55
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=89.22 E-value=2.6 Score=40.23 Aligned_cols=83 Identities=19% Similarity=0.240 Sum_probs=61.4
Q ss_pred cCCCCHHHHHHHHHHHHhCC-CceEEeCCCCC---CCCHHHHHHHHHHhhcCCCCCCCeEecCCC--ChHHHH----HHH
Q psy14115 34 QGGLDEALRKDCAHQMVEKD-VNGFAVGGLSG---GEAKEDFWYSVLVSINCLPKDKPRYVMGIG--FAVDLL----ICC 103 (319)
Q Consensus 34 qGG~~~dlR~~s~~~l~~~~-~~G~aIgGl~~---ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg--~P~~Il----~~V 103 (319)
.|.+|.+--++.++.+.+.+ ++|+.+.|..+ ..+.+|..++++.+.+......|.++ |+| +..+.+ .+.
T Consensus 15 dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~-gv~~~~t~~~i~la~~a~ 93 (290)
T TIGR00683 15 DGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIA-QVGSVNLKEAVELGKYAT 93 (290)
T ss_pred CCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEE-ecCCCCHHHHHHHHHHHH
Confidence 46788888888999999999 99999998532 24788999999988888766566554 665 344433 456
Q ss_pred HcCCcEeecCCccc
Q psy14115 104 ALGADMFDCVFPTR 117 (319)
Q Consensus 104 ~lGvD~FD~~~Ptr 117 (319)
++|+|.+=..-|..
T Consensus 94 ~~Gad~v~v~~P~y 107 (290)
T TIGR00683 94 ELGYDCLSAVTPFY 107 (290)
T ss_pred HhCCCEEEEeCCcC
Confidence 79999876665643
No 56
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=89.20 E-value=6.8 Score=37.10 Aligned_cols=98 Identities=16% Similarity=0.154 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeC---------CCCCCCCHHHHHHHHHHhhcC
Q psy14115 11 VRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVG---------GLSGGEAKEDFWYSVLVSINC 81 (319)
Q Consensus 11 ~rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIg---------Gl~~ge~~~e~~~ii~~~~~~ 81 (319)
..|+++........ ...+++.|-| .+.+.-.++++.+.+.+++++-|- |-..+.+++...++++.+++.
T Consensus 75 ~~~~~~~~~~~~~~-~~p~ivsi~g-~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~ 152 (296)
T cd04740 75 EAFLEELLPWLREF-GTPVIASIAG-STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA 152 (296)
T ss_pred HHHHHHHHHHhhcC-CCcEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc
Confidence 35666654432222 2456656554 667777788888888889998772 334456778888999999887
Q ss_pred CCCCCCeEe-cCC--CChHHHHH-HHHcCCcEeec
Q psy14115 82 LPKDKPRYV-MGI--GFAVDLLI-CCALGADMFDC 112 (319)
Q Consensus 82 LP~dkPr~l-~Gv--g~P~~Il~-~V~lGvD~FD~ 112 (319)
. +.|..+ ++. ....++.. +.+.|+|.++.
T Consensus 153 ~--~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 153 T--DVPVIVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred c--CCCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 6 578775 443 23556554 66799997754
No 57
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=88.81 E-value=6.4 Score=37.67 Aligned_cols=98 Identities=12% Similarity=0.105 Sum_probs=63.2
Q ss_pred HHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEe--C----------CCCCCCCHHHHHHHHHHhh
Q psy14115 12 RWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAV--G----------GLSGGEAKEDFWYSVLVSI 79 (319)
Q Consensus 12 rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aI--g----------Gl~~ge~~~e~~~ii~~~~ 79 (319)
.|+++..+..+......+++.+.|+.+++.-.++++.+.+.+++++-+ + |...+.+++.+.++++.+.
T Consensus 85 ~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~ 164 (299)
T cd02940 85 YWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVR 164 (299)
T ss_pred HHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHH
Confidence 455543322222113578999998768887788888887766776664 2 2233467788889998887
Q ss_pred cCCCCCCCeEe-c--CCCChHHHHH-HHHcCCcEee
Q psy14115 80 NCLPKDKPRYV-M--GIGFAVDLLI-CCALGADMFD 111 (319)
Q Consensus 80 ~~LP~dkPr~l-~--Gvg~P~~Il~-~V~lGvD~FD 111 (319)
+.. ++|..+ + ......++.. +.+.|+|.+-
T Consensus 165 ~~~--~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~ 198 (299)
T cd02940 165 EAV--KIPVIAKLTPNITDIREIARAAKEGGADGVS 198 (299)
T ss_pred Hhc--CCCeEEECCCCchhHHHHHHHHHHcCCCEEE
Confidence 765 367665 3 3334556665 6678999764
No 58
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=88.70 E-value=3.2 Score=39.33 Aligned_cols=84 Identities=20% Similarity=0.259 Sum_probs=63.3
Q ss_pred cCCCCHHHHHHHHHHHHhCCCceEEeCCCCC---CCCHHHHHHHHHHhhcCCCCCCCeEecCCCC--hHHHH----HHHH
Q psy14115 34 QGGLDEALRKDCAHQMVEKDVNGFAVGGLSG---GEAKEDFWYSVLVSINCLPKDKPRYVMGIGF--AVDLL----ICCA 104 (319)
Q Consensus 34 qGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~---ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~--P~~Il----~~V~ 104 (319)
.|.+|.+.-.+.++.+.+.+++|+.+.|..+ -.+.+|+.++++.+.+......|.+ .|++. ..+.+ .+..
T Consensus 13 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi-~gv~~~s~~~~i~~a~~a~~ 91 (285)
T TIGR00674 13 DGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVI-AGTGSNATEEAISLTKFAED 91 (285)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEE-EeCCCccHHHHHHHHHHHHH
Confidence 5778999889999999999999999988432 2467899999998888876656654 57763 44544 4556
Q ss_pred cCCcEeecCCcccc
Q psy14115 105 LGADMFDCVFPTRT 118 (319)
Q Consensus 105 lGvD~FD~~~Ptr~ 118 (319)
.|+|-+=..-|...
T Consensus 92 ~Gad~v~v~pP~y~ 105 (285)
T TIGR00674 92 VGADGFLVVTPYYN 105 (285)
T ss_pred cCCCEEEEcCCcCC
Confidence 89998777766644
No 59
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=88.67 E-value=3 Score=39.92 Aligned_cols=84 Identities=21% Similarity=0.254 Sum_probs=63.3
Q ss_pred cCCCCHHHHHHHHHHHHhCCCceEEeCCCCC---CCCHHHHHHHHHHhhcCCCCCCCeEecCCCC--hHHH----HHHHH
Q psy14115 34 QGGLDEALRKDCAHQMVEKDVNGFAVGGLSG---GEAKEDFWYSVLVSINCLPKDKPRYVMGIGF--AVDL----LICCA 104 (319)
Q Consensus 34 qGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~---ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~--P~~I----l~~V~ 104 (319)
.|.+|.+.-.+-++.+.+.+++|+.+.|..+ ..+.+|..++++.+.+......|.+ .|+|. ..+. -.+.+
T Consensus 15 dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi-~gv~~~~t~~ai~~a~~A~~ 93 (294)
T TIGR02313 15 NGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFA-PGTGALNHDETLELTKFAEE 93 (294)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEE-EECCcchHHHHHHHHHHHHH
Confidence 4778888888899999999999999999642 2467899999999888887656665 47753 3333 34567
Q ss_pred cCCcEeecCCcccc
Q psy14115 105 LGADMFDCVFPTRT 118 (319)
Q Consensus 105 lGvD~FD~~~Ptr~ 118 (319)
+|+|-+=..-|...
T Consensus 94 ~Gad~v~v~pP~y~ 107 (294)
T TIGR02313 94 AGADAAMVIVPYYN 107 (294)
T ss_pred cCCCEEEEcCccCC
Confidence 89998877777643
No 60
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=87.86 E-value=4.2 Score=39.04 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=61.2
Q ss_pred cCCCCHHHHHHHHHHHHhCCCceEEeCCCCC---CCCHHHHHHHHHHhhcCCCCCCCeEecCCCC-hHHHH----HHHHc
Q psy14115 34 QGGLDEALRKDCAHQMVEKDVNGFAVGGLSG---GEAKEDFWYSVLVSINCLPKDKPRYVMGIGF-AVDLL----ICCAL 105 (319)
Q Consensus 34 qGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~---ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~-P~~Il----~~V~l 105 (319)
.|.+|.+.-.+-++.+.+.+++|+.+.|..+ ..+.+|+.++++.+.+..+...|.++ |+|. ..+.+ .+-++
T Consensus 22 dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~-gv~~~t~~~i~~~~~a~~~ 100 (303)
T PRK03620 22 DGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIA-GAGGGTAQAIEYAQAAERA 100 (303)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEE-ecCCCHHHHHHHHHHHHHh
Confidence 4668888888889999999999999988532 35789999999999888887777665 6653 33333 44568
Q ss_pred CCcEeecCCcc
Q psy14115 106 GADMFDCVFPT 116 (319)
Q Consensus 106 GvD~FD~~~Pt 116 (319)
|+|-+=..-|.
T Consensus 101 Gadav~~~pP~ 111 (303)
T PRK03620 101 GADGILLLPPY 111 (303)
T ss_pred CCCEEEECCCC
Confidence 99977555554
No 61
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=87.78 E-value=3.8 Score=40.19 Aligned_cols=91 Identities=13% Similarity=0.037 Sum_probs=73.7
Q ss_pred CCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC---CC-ChHHHHHHHHcCCcEee
Q psy14115 36 GLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG---IG-FAVDLLICCALGADMFD 111 (319)
Q Consensus 36 G~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G---vg-~P~~Il~~V~lGvD~FD 111 (319)
..+++.-.+-++.+.+.+.+.+.|-...+...++++.+++..+.+.+|++.|.-+.+ .| ...+.+.++..|+|.+|
T Consensus 139 ~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD 218 (333)
T TIGR03217 139 MTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRID 218 (333)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEEE
Confidence 356677777888888899999999998888999999999999999998777764432 23 35578899999999999
Q ss_pred cCCccccCcCCccee
Q psy14115 112 CVFPTRTARFGSALV 126 (319)
Q Consensus 112 ~~~Ptr~Ar~G~alt 126 (319)
++..-.-++.|.+=+
T Consensus 219 ~Sl~G~G~~aGN~~~ 233 (333)
T TIGR03217 219 ASLRGLGAGAGNAPL 233 (333)
T ss_pred eecccccccccCccH
Confidence 999888887776544
No 62
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=87.73 E-value=3.9 Score=42.18 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC---CC-ChHHHHHHHHcCCcEeecC
Q psy14115 38 DEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG---IG-FAVDLLICCALGADMFDCV 113 (319)
Q Consensus 38 ~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G---vg-~P~~Il~~V~lGvD~FD~~ 113 (319)
..+--.+.++++.+.+++.+.|....+...+++..+++..+.+. + +.|..+.+ .| ...+.+.|+..|+|.||++
T Consensus 161 t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~-~-~~pi~~H~Hnt~GlA~An~laAieAGad~vD~a 238 (468)
T PRK12581 161 TLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAM-T-NLPLIVHTHATSGISQMTYLAAVEAGADRIDTA 238 (468)
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhc-c-CCeEEEEeCCCCccHHHHHHHHHHcCCCEEEee
Confidence 44567788899999999999999998889999999999998874 3 57766542 34 3668999999999999999
Q ss_pred CccccCcCCc
Q psy14115 114 FPTRTARFGS 123 (319)
Q Consensus 114 ~Ptr~Ar~G~ 123 (319)
..--..+.|.
T Consensus 239 i~g~g~gagN 248 (468)
T PRK12581 239 LSPFSEGTSQ 248 (468)
T ss_pred ccccCCCcCC
Confidence 8765555553
No 63
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=87.59 E-value=6.8 Score=38.75 Aligned_cols=94 Identities=12% Similarity=0.065 Sum_probs=70.8
Q ss_pred eeeeccCC-CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCe--Eec-CCC-ChHHHHHHH
Q psy14115 29 IFPIVQGG-LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPR--YVM-GIG-FAVDLLICC 103 (319)
Q Consensus 29 lfgiVqGG-~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr--~l~-Gvg-~P~~Il~~V 103 (319)
-|.+.-.+ .+++.-.+.++.+.+.+++.+.+....+...++++.+++..+.+.+| .|. |.. -.| ...+.+.++
T Consensus 129 ~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~--~~l~~H~Hnd~GlA~AN~laA~ 206 (363)
T TIGR02090 129 EFSAEDATRTDIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVK--LPISVHCHNDFGLATANSIAGV 206 (363)
T ss_pred EEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccC--ceEEEEecCCCChHHHHHHHHH
Confidence 34443333 56777788888999999999999998888899999999999998877 444 332 124 245889999
Q ss_pred HcCCcEeecCCccccCcCCcc
Q psy14115 104 ALGADMFDCVFPTRTARFGSA 124 (319)
Q Consensus 104 ~lGvD~FD~~~Ptr~Ar~G~a 124 (319)
..|+|.+|++.--.-.|.|.+
T Consensus 207 ~aGa~~vd~s~~GlGeraGN~ 227 (363)
T TIGR02090 207 KAGAEQVHVTVNGIGERAGNA 227 (363)
T ss_pred HCCCCEEEEEeeccccccccc
Confidence 999999999877665555444
No 64
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=87.28 E-value=3.5 Score=43.70 Aligned_cols=87 Identities=17% Similarity=0.187 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC---CCC-hHHHHHHHHcCCcEeecC
Q psy14115 38 DEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG---IGF-AVDLLICCALGADMFDCV 113 (319)
Q Consensus 38 ~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G---vg~-P~~Il~~V~lGvD~FD~~ 113 (319)
+.+-..+.++++.+.+++-+.|-...+...+++..+++..+.+.+ +.|..+.+ .|. ..+.+.|+..|+|.+|++
T Consensus 153 ~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~--~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~a 230 (593)
T PRK14040 153 TLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRV--DVPLHLHCHATTGLSTATLLKAIEAGIDGVDTA 230 (593)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhc--CCeEEEEECCCCchHHHHHHHHHHcCCCEEEec
Confidence 456677888899999999999999999999999999999998887 46765532 343 567999999999999999
Q ss_pred CccccCcCCccee
Q psy14115 114 FPTRTARFGSALV 126 (319)
Q Consensus 114 ~Ptr~Ar~G~alt 126 (319)
..-.-.+.|.+=+
T Consensus 231 i~glG~~~Gn~~l 243 (593)
T PRK14040 231 ISSMSMTYGHSAT 243 (593)
T ss_pred cccccccccchhH
Confidence 9888777776544
No 65
>KOG2368|consensus
Probab=87.06 E-value=2.9 Score=39.48 Aligned_cols=112 Identities=11% Similarity=0.133 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC---CCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhh
Q psy14115 3 VAIAKDRTVRWLDRCLAAHRNPT---TQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSI 79 (319)
Q Consensus 3 ~~~av~RT~rWl~r~~~~~~~~~---~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~ 79 (319)
+++|+.|-..-++.+.+..-+.. ...+=.|.+|...|..-.+-.+.|.+++.--..+|..-+--++..+.++++.+.
T Consensus 129 iees~~rf~~v~kaA~~~ni~vRGYVScvvGCPyeG~v~P~kVa~V~k~ly~mGCyEiSLGDTIGvGTpgtm~~ML~~Vm 208 (316)
T KOG2368|consen 129 IEESLKRFMEVLKAAQEHNIRVRGYVSCVVGCPYEGAVQPSKVAEVVKKLYEMGCYEISLGDTIGVGTPGTMKRMLDAVM 208 (316)
T ss_pred HHHHHHHHHHHHHHHHHcCCccceEEEEEecCCccCCcCHHHHHHHHHHHHhCCcEEEecccccccCCchhHHHHHHHHH
Confidence 45555555544444433222211 234557889999999999999999999877777776533335678999999999
Q ss_pred cCCCCCC-CeEecCC-CC-hHHHHHHHHcCCcEeecCC
Q psy14115 80 NCLPKDK-PRYVMGI-GF-AVDLLICCALGADMFDCVF 114 (319)
Q Consensus 80 ~~LP~dk-Pr~l~Gv-g~-P~~Il~~V~lGvD~FD~~~ 114 (319)
..+|.++ ..|.... |. -.+||.++.+||-+.|++.
T Consensus 209 k~vPa~~LAVH~HDTYGQALaNiL~slqmGi~vvDSsv 246 (316)
T KOG2368|consen 209 KVVPAEKLAVHCHDTYGQALANILVSLQMGIRVVDSSV 246 (316)
T ss_pred HhCCHHHhhhhhhhhHHHHHHHHHHHHHhcceehhhhc
Confidence 9999876 3455443 54 5679999999999999874
No 66
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=86.31 E-value=6.2 Score=38.98 Aligned_cols=96 Identities=15% Similarity=0.070 Sum_probs=71.5
Q ss_pred ceeeeccCC-CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCe--EecC-CC-ChHHHHHH
Q psy14115 28 NIFPIVQGG-LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPR--YVMG-IG-FAVDLLIC 102 (319)
Q Consensus 28 ~lfgiVqGG-~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr--~l~G-vg-~P~~Il~~ 102 (319)
.-|+.--++ .+++.-.+.++.+.+.+.+.+.+....+...++++.+++..+.+.++ .|. |... .| .-.+.+.|
T Consensus 129 v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~--v~l~~H~HNd~GlA~ANalaA 206 (365)
T TIGR02660 129 VSVGGEDASRADPDFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVD--LPLEMHAHNDLGMATANTLAA 206 (365)
T ss_pred EEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcC--CeEEEEecCCCChHHHHHHHH
Confidence 345554444 56777778888888899999999998888999999999999988774 343 3321 23 24578899
Q ss_pred HHcCCcEeecCCccccCcCCcce
Q psy14115 103 CALGADMFDCVFPTRTARFGSAL 125 (319)
Q Consensus 103 V~lGvD~FD~~~Ptr~Ar~G~al 125 (319)
+..|+|.+|++.--.-.|.|.+=
T Consensus 207 ~~aGa~~vd~tl~GiGeraGN~~ 229 (365)
T TIGR02660 207 VRAGATHVNTTVNGLGERAGNAA 229 (365)
T ss_pred HHhCCCEEEEEeeccccccccCC
Confidence 99999999998776665555543
No 67
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=86.16 E-value=6.3 Score=37.52 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=62.1
Q ss_pred cCCCCHHHHHHHHHHHHhCCCceEEeCCCCC---CCCHHHHHHHHHHhhcCCCCCCCeEecCCC-ChHHHH----HHHHc
Q psy14115 34 QGGLDEALRKDCAHQMVEKDVNGFAVGGLSG---GEAKEDFWYSVLVSINCLPKDKPRYVMGIG-FAVDLL----ICCAL 105 (319)
Q Consensus 34 qGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~---ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg-~P~~Il----~~V~l 105 (319)
.|.+|.+.-++-++.+.+.+++|+.+.|..+ -.+.+|+.++++.+.+..+...|.++ |+| +..+.+ .+.++
T Consensus 15 dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~-gv~~~t~~~i~~a~~a~~~ 93 (289)
T cd00951 15 DGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLA-GAGYGTATAIAYAQAAEKA 93 (289)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEE-ecCCCHHHHHHHHHHHHHh
Confidence 4678888888899999999999999998532 24678999999999988887777765 554 333332 45679
Q ss_pred CCcEeecCCccc
Q psy14115 106 GADMFDCVFPTR 117 (319)
Q Consensus 106 GvD~FD~~~Ptr 117 (319)
|+|-+=..-|..
T Consensus 94 Gad~v~~~pP~y 105 (289)
T cd00951 94 GADGILLLPPYL 105 (289)
T ss_pred CCCEEEECCCCC
Confidence 999876655543
No 68
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=84.69 E-value=11 Score=38.01 Aligned_cols=98 Identities=9% Similarity=0.031 Sum_probs=66.8
Q ss_pred HHHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeC------------CCCCCCCHHHHHHHHHHh
Q psy14115 11 VRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVG------------GLSGGEAKEDFWYSVLVS 78 (319)
Q Consensus 11 ~rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIg------------Gl~~ge~~~e~~~ii~~~ 78 (319)
..|++.....+++.....+++.|-|+..++--.+.++.+.+.+++++-+- |...+.+++...+++..+
T Consensus 98 ~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~V 177 (385)
T PLN02495 98 ETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWI 177 (385)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHH
Confidence 46777643332222235799999888898888889998888788888752 223456677777888887
Q ss_pred hcCCCCCCCeEe-cC--CCChHHHHH-HHHcCCcEe
Q psy14115 79 INCLPKDKPRYV-MG--IGFAVDLLI-CCALGADMF 110 (319)
Q Consensus 79 ~~~LP~dkPr~l-~G--vg~P~~Il~-~V~lGvD~F 110 (319)
.+.. ++|.++ ++ +..+.++.. +.+.|+|-+
T Consensus 178 k~~~--~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi 211 (385)
T PLN02495 178 NAKA--TVPVWAKMTPNITDITQPARVALKSGCEGV 211 (385)
T ss_pred HHhh--cCceEEEeCCChhhHHHHHHHHHHhCCCEE
Confidence 7654 478776 33 456777776 667889854
No 69
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=84.61 E-value=16 Score=35.57 Aligned_cols=86 Identities=20% Similarity=0.153 Sum_probs=57.3
Q ss_pred ceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCC-------------------CCCCCCHHHHHHHHHHhhcCCCCCCCe
Q psy14115 28 NIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGG-------------------LSGGEAKEDFWYSVLVSINCLPKDKPR 88 (319)
Q Consensus 28 ~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgG-------------------l~~ge~~~e~~~ii~~~~~~LP~dkPr 88 (319)
.++.=+-.....+.-.+-++.+.+.+++|+.+.+ +++......-++.+..+.+.++.+.|.
T Consensus 204 Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipI 283 (327)
T cd04738 204 PLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPI 283 (327)
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcE
Confidence 3554444334433444566777788999998644 222111223367778888888777888
Q ss_pred Eec-CCCChHHHHHHHHcCCcEeecC
Q psy14115 89 YVM-GIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 89 ~l~-Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
... |+-+++|+..++..|+|++-..
T Consensus 284 i~~GGI~t~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 284 IGVGGISSGEDAYEKIRAGASLVQLY 309 (327)
T ss_pred EEECCCCCHHHHHHHHHcCCCHHhcc
Confidence 876 5899999999999999987543
No 70
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=84.61 E-value=11 Score=37.45 Aligned_cols=96 Identities=16% Similarity=0.108 Sum_probs=71.7
Q ss_pred ceeeeccCC-CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCe--EecC-CCC-hHHHHHH
Q psy14115 28 NIFPIVQGG-LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPR--YVMG-IGF-AVDLLIC 102 (319)
Q Consensus 28 ~lfgiVqGG-~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr--~l~G-vg~-P~~Il~~ 102 (319)
..|...-++ .+++.-.+.++.+.+.+++.+.+....+...++++.+++..+.+.+ +.|. |... .|. ..+.+.|
T Consensus 132 v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~--~~~l~~H~Hnd~GlA~AN~laA 209 (378)
T PRK11858 132 VSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAV--DIPIEVHCHNDFGMATANALAG 209 (378)
T ss_pred EEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCcCHHHHHHHHH
Confidence 344443443 6777888888999999999999999888889999999999988877 3444 3321 242 4578999
Q ss_pred HHcCCcEeecCCccccCcCCcce
Q psy14115 103 CALGADMFDCVFPTRTARFGSAL 125 (319)
Q Consensus 103 V~lGvD~FD~~~Ptr~Ar~G~al 125 (319)
+..|+|.+|++.--.-.|.|.+=
T Consensus 210 v~aGa~~vd~tv~GlGeraGNa~ 232 (378)
T PRK11858 210 IEAGAKQVHTTVNGLGERAGNAA 232 (378)
T ss_pred HHcCCCEEEEeeccccccccCcc
Confidence 99999999998776665555543
No 71
>PRK12999 pyruvate carboxylase; Reviewed
Probab=84.05 E-value=5.1 Score=45.61 Aligned_cols=87 Identities=15% Similarity=0.113 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC---CC-ChHHHHHHHHcCCcEeec
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG---IG-FAVDLLICCALGADMFDC 112 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G---vg-~P~~Il~~V~lGvD~FD~ 112 (319)
.+.+.-.+.++++.+.+++-+.|-...+...+++..++|..+.+.+ +.|.++.+ .| ...+.+.|+..|+|.+|+
T Consensus 688 ~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~--~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~ 765 (1146)
T PRK12999 688 YDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEV--DLPIHLHTHDTSGNGLATYLAAAEAGVDIVDV 765 (1146)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCCCchHHHHHHHHHHhCCCEEEe
Confidence 5777788899999999999999999988899999999999999887 47776643 34 366899999999999999
Q ss_pred CCccccCcCCcce
Q psy14115 113 VFPTRTARFGSAL 125 (319)
Q Consensus 113 ~~Ptr~Ar~G~al 125 (319)
+..-.-.+-|.+=
T Consensus 766 av~glg~~tgn~~ 778 (1146)
T PRK12999 766 AVASMSGLTSQPS 778 (1146)
T ss_pred cchhhcCCcCCHH
Confidence 9988877776543
No 72
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=83.78 E-value=3.9 Score=36.90 Aligned_cols=66 Identities=15% Similarity=0.059 Sum_probs=46.2
Q ss_pred HHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEe-cCCCChHHHHHHHHcCCcEeec
Q psy14115 46 AHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYV-MGIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 46 ~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l-~Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
+++..+.+++.+.+++........++ +.+..+.+.+|.+.|... -|+.+|+++..+.++|+|-+-.
T Consensus 134 ~~~~~~~g~~~i~~t~~~~~~~~~~~-~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gviv 200 (217)
T cd00331 134 LERALALGAKIIGINNRDLKTFEVDL-NTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLI 200 (217)
T ss_pred HHHHHHcCCCEEEEeCCCccccCcCH-HHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEE
Confidence 44555677888887764332222223 555666667777788885 6899999999999999997643
No 73
>PLN02979 glycolate oxidase
Probab=83.70 E-value=5.1 Score=40.06 Aligned_cols=83 Identities=18% Similarity=0.217 Sum_probs=54.0
Q ss_pred eeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHH--HHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCC
Q psy14115 31 PIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKE--DFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGA 107 (319)
Q Consensus 31 giVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~--e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGv 107 (319)
.+|..|. +..+-++.+.+.+++|+.++|-++..... --..++..+.+.+..+.|.++- |+-+..||+.++++|.
T Consensus 225 PvivKgV---~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGA 301 (366)
T PLN02979 225 PILVKGV---LTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 301 (366)
T ss_pred CEEeecC---CCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCC
Confidence 4555555 24567788889999999999865432110 1123333344444445677764 7899999999999999
Q ss_pred cEeecCCcc
Q psy14115 108 DMFDCVFPT 116 (319)
Q Consensus 108 D~FD~~~Pt 116 (319)
|..=..-|.
T Consensus 302 daV~iGrp~ 310 (366)
T PLN02979 302 SGIFIGRPV 310 (366)
T ss_pred CEEEEcHHH
Confidence 976544333
No 74
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=83.42 E-value=11 Score=36.84 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeC-------------------CCCCC
Q psy14115 5 IAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVG-------------------GLSGG 65 (319)
Q Consensus 5 ~av~RT~rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIg-------------------Gl~~g 65 (319)
+.+.+-.+|+++......+...-.+|.=+-.....+--..-++.+.+.+++|+++- |+|+.
T Consensus 189 ~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~ 268 (335)
T TIGR01036 189 AELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGK 268 (335)
T ss_pred HHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCH
Confidence 34455566666554421111123566666554442222334444556677777743 33221
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEeec
Q psy14115 66 EAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 66 e~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
.-+.--.+.+..+.+.++.+.|..-. ||-+++|+...+..|+|.+-.
T Consensus 269 ~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv 316 (335)
T TIGR01036 269 PLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQI 316 (335)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHh
Confidence 11223356677777777777888866 589999999999999997644
No 75
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=83.36 E-value=20 Score=33.74 Aligned_cols=99 Identities=18% Similarity=0.184 Sum_probs=61.8
Q ss_pred HHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCC--------CCCCHHHHHHHHHHhhcCCC
Q psy14115 12 RWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLS--------GGEAKEDFWYSVLVSINCLP 83 (319)
Q Consensus 12 rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~--------~ge~~~e~~~ii~~~~~~LP 83 (319)
.|+++.....+......+++.| +|.+++.-.++++.+.+.+++++-|---+ .+.+++...++++.+.+.+
T Consensus 84 ~~~~~i~~~~~~~~~~pvi~si-~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~- 161 (289)
T cd02810 84 VWLQDIAKAKKEFPGQPLIASV-GGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV- 161 (289)
T ss_pred HHHHHHHHHHhccCCCeEEEEe-ccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-
Confidence 4555544433321234455555 45777777888998888888888864211 1345677788899888876
Q ss_pred CCCCeEe-cCCC-Ch---HHHH-HHHHcCCcEeecC
Q psy14115 84 KDKPRYV-MGIG-FA---VDLL-ICCALGADMFDCV 113 (319)
Q Consensus 84 ~dkPr~l-~Gvg-~P---~~Il-~~V~lGvD~FD~~ 113 (319)
+.|..+ ++.+ ++ .+++ .+.+.|+|.+...
T Consensus 162 -~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 162 -DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred -CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 678775 3333 22 3344 3557899998764
No 76
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=83.13 E-value=5.6 Score=45.33 Aligned_cols=79 Identities=13% Similarity=0.102 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC---CC-ChHHHHHHHHcCCcEeecC
Q psy14115 38 DEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG---IG-FAVDLLICCALGADMFDCV 113 (319)
Q Consensus 38 ~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G---vg-~P~~Il~~V~lGvD~FD~~ 113 (319)
+.+-..+-++++.+.+++-+.|....+...+.+..++|..+.+.+ +.|.++.. .| ...+.+.|++.|+|.+|++
T Consensus 687 ~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~--~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~a 764 (1143)
T TIGR01235 687 DLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKT--DLPIHFHTHDTSGIAVASMLAAVEAGVDVVDVA 764 (1143)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhc--CCeEEEEECCCCCcHHHHHHHHHHhCCCEEEec
Confidence 456677889999999999999999998899999999999998887 57777642 34 3667999999999999999
Q ss_pred Ccccc
Q psy14115 114 FPTRT 118 (319)
Q Consensus 114 ~Ptr~ 118 (319)
..-..
T Consensus 765 i~gl~ 769 (1143)
T TIGR01235 765 VDSMS 769 (1143)
T ss_pred chhhc
Confidence 86653
No 77
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=82.43 E-value=15 Score=35.93 Aligned_cols=105 Identities=19% Similarity=0.129 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCC---------------CCCC---
Q psy14115 6 AKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLS---------------GGEA--- 67 (319)
Q Consensus 6 av~RT~rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~---------------~ge~--- 67 (319)
.+.+..+++.+...... ++-.++.=+-.+...+.-.+-++.+.+.+++|+.+.+-. +|.+
T Consensus 193 ~~~eiv~aVr~~~~~~~--~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~ 270 (344)
T PRK05286 193 ALDELLAALKEAQAELH--GYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRP 270 (344)
T ss_pred HHHHHHHHHHHHHhccc--cCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHH
Confidence 34444555554442110 013455555544444334455666777889998876521 1111
Q ss_pred -HHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEeec
Q psy14115 68 -KEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 68 -~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
...-++.+..+.+.++.+.|.... |+-+++++...+..|+|++-.
T Consensus 271 ~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v 317 (344)
T PRK05286 271 LFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQI 317 (344)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHH
Confidence 123466778888888777888766 689999999999999997643
No 78
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=82.24 E-value=5.9 Score=39.58 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=55.0
Q ss_pred eeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHH---HHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcC
Q psy14115 31 PIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKED---FWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALG 106 (319)
Q Consensus 31 giVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e---~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lG 106 (319)
.+|..|. +..+-++.+.+.+++|+.++|-++.. .+. -..++..+.+.+..+.|.++- |+-+..||+.++++|
T Consensus 226 PiivKgV---~~~~dA~~a~~~Gvd~I~VsnhGGrq-ld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALG 301 (367)
T PLN02493 226 PILVKGV---LTGEDARIAIQAGAAGIIVSNHGARQ-LDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 301 (367)
T ss_pred CEEeecC---CCHHHHHHHHHcCCCEEEECCCCCCC-CCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcC
Confidence 4555555 24667778888999999999965432 111 133444444444455677764 799999999999999
Q ss_pred CcEeecCCcc
Q psy14115 107 ADMFDCVFPT 116 (319)
Q Consensus 107 vD~FD~~~Pt 116 (319)
.|..=..-|.
T Consensus 302 A~aV~iGr~~ 311 (367)
T PLN02493 302 ASGIFIGRPV 311 (367)
T ss_pred CCEEEEcHHH
Confidence 9976544433
No 79
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=81.70 E-value=14 Score=34.72 Aligned_cols=84 Identities=17% Similarity=0.051 Sum_probs=56.1
Q ss_pred eeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCC------------------CCCH----HHHHHHHHHhhcCCCCCC
Q psy14115 29 IFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSG------------------GEAK----EDFWYSVLVSINCLPKDK 86 (319)
Q Consensus 29 lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~------------------ge~~----~e~~~ii~~~~~~LP~dk 86 (319)
++.=+-++.+.+.-.+-++.+.+.+++++.+.+... |.+. ..-++.+..+.+.+|.+.
T Consensus 165 v~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~i 244 (289)
T cd02810 165 LLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDI 244 (289)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCC
Confidence 444444556555455566777788899988753211 1111 112567777888887678
Q ss_pred CeEec-CCCChHHHHHHHHcCCcEeec
Q psy14115 87 PRYVM-GIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 87 Pr~l~-Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
|.... |+-+|+++..+++.|+|.+-.
T Consensus 245 piia~GGI~~~~da~~~l~~GAd~V~v 271 (289)
T cd02810 245 PIIGVGGIDSGEDVLEMLMAGASAVQV 271 (289)
T ss_pred CEEEECCCCCHHHHHHHHHcCccHheE
Confidence 88776 588999999999999987643
No 80
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=81.21 E-value=8.5 Score=36.48 Aligned_cols=78 Identities=13% Similarity=0.165 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCceEEeCCCCC---CCCHHHHHHHHHHhhcCCCCCCCeEecCCC--ChHHHH----HHHHc
Q psy14115 35 GGLDEALRKDCAHQMVEKDVNGFAVGGLSG---GEAKEDFWYSVLVSINCLPKDKPRYVMGIG--FAVDLL----ICCAL 105 (319)
Q Consensus 35 GG~~~dlR~~s~~~l~~~~~~G~aIgGl~~---ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg--~P~~Il----~~V~l 105 (319)
|.+|.+.-.+-++.+.+.+++|+.+.|..+ ..+.+|+.++++.+.+... + .+.|+| ++.+.+ .+..+
T Consensus 15 g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~--~--vi~gvg~~~~~~ai~~a~~a~~~ 90 (279)
T cd00953 15 NKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD--K--VIFQVGSLNLEESIELARAAKSF 90 (279)
T ss_pred CCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC--C--EEEEeCcCCHHHHHHHHHHHHHc
Confidence 778988888889999999999999988532 3478899999998887652 2 466776 344433 45569
Q ss_pred CCcEeecCCcc
Q psy14115 106 GADMFDCVFPT 116 (319)
Q Consensus 106 GvD~FD~~~Pt 116 (319)
|+|-+=..-|.
T Consensus 91 Gad~v~v~~P~ 101 (279)
T cd00953 91 GIYAIASLPPY 101 (279)
T ss_pred CCCEEEEeCCc
Confidence 99977665554
No 81
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=81.06 E-value=11 Score=31.13 Aligned_cols=66 Identities=17% Similarity=0.072 Sum_probs=46.4
Q ss_pred HHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEe
Q psy14115 44 DCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMF 110 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~F 110 (319)
+.++...+.+.+-++|.+.. ....+.+.++++.+.+..|++.+.++=|...+.++-.+.++|+|-|
T Consensus 41 ~~~~~a~~~~~d~V~iS~~~-~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~ 106 (122)
T cd02071 41 EIVEAAIQEDVDVIGLSSLS-GGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEI 106 (122)
T ss_pred HHHHHHHHcCCCEEEEcccc-hhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEE
Confidence 45556667788888888764 3456667778888777766544444445667777889999998864
No 82
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=80.97 E-value=19 Score=37.59 Aligned_cols=97 Identities=16% Similarity=0.148 Sum_probs=71.6
Q ss_pred eeeeccCC-CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCC--CCCeEecC---CC-ChHHHHH
Q psy14115 29 IFPIVQGG-LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPK--DKPRYVMG---IG-FAVDLLI 101 (319)
Q Consensus 29 lfgiVqGG-~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~--dkPr~l~G---vg-~P~~Il~ 101 (319)
.|+.--++ .+++.-.+.++.+.+.+.+-+.|....+...+.++.+++..+.+.+|. +.|.-+.+ .| .-.+.+.
T Consensus 227 ~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANsla 306 (503)
T PLN03228 227 QFGCEDGGRSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIA 306 (503)
T ss_pred EeccccccccCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHH
Confidence 44443333 667767888888899999999999998889999999999999888874 33432221 23 2457889
Q ss_pred HHHcCCcEeecCCccccCcCCcce
Q psy14115 102 CCALGADMFDCVFPTRTARFGSAL 125 (319)
Q Consensus 102 ~V~lGvD~FD~~~Ptr~Ar~G~al 125 (319)
|+..|+|.+|++.--.-.|.|.+=
T Consensus 307 Ai~aGa~~Vd~Tv~GiGERaGNa~ 330 (503)
T PLN03228 307 GICAGARQVEVTINGIGERSGNAS 330 (503)
T ss_pred HHHhCCCEEEEeccccccccCCcc
Confidence 999999999998766655555543
No 83
>PRK00915 2-isopropylmalate synthase; Validated
Probab=79.37 E-value=12 Score=38.93 Aligned_cols=97 Identities=14% Similarity=0.174 Sum_probs=73.1
Q ss_pred ceeeeccCC-CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCC--CCCe--EecC-CCC-hHHHH
Q psy14115 28 NIFPIVQGG-LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPK--DKPR--YVMG-IGF-AVDLL 100 (319)
Q Consensus 28 ~lfgiVqGG-~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~--dkPr--~l~G-vg~-P~~Il 100 (319)
..|+.--++ .+++.-.+.++.+.+.+.+-+.+....+...++++.+++..+.+.+|. +.|. |... .|. -.+.+
T Consensus 136 v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANsl 215 (513)
T PRK00915 136 VEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSL 215 (513)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHH
Confidence 456655554 567777888888889999999999998889999999999999988874 2343 2221 232 45788
Q ss_pred HHHHcCCcEeecCCccccCcCCcc
Q psy14115 101 ICCALGADMFDCVFPTRTARFGSA 124 (319)
Q Consensus 101 ~~V~lGvD~FD~~~Ptr~Ar~G~a 124 (319)
.++..|+|.+|++.--.-.|.|.+
T Consensus 216 aAv~aGa~~Vd~Tv~GlGERaGNa 239 (513)
T PRK00915 216 AAVEAGARQVECTINGIGERAGNA 239 (513)
T ss_pred HHHHhCCCEEEEEeecccccccCc
Confidence 999999999999887665555544
No 84
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=79.35 E-value=17 Score=37.86 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCe--EecC-CCC-hHHHHHHHHcCCcEeec
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPR--YVMG-IGF-AVDLLICCALGADMFDC 112 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr--~l~G-vg~-P~~Il~~V~lGvD~FD~ 112 (319)
.+++.-.+.++.+.+.+.+-+.|....+...++++.+++..+.+.+ +.|. |... .|. ..+.+.++..|+|.+|+
T Consensus 155 ~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~--~v~i~~H~HND~GlA~ANslaAi~aGa~~Vd~ 232 (524)
T PRK12344 155 ANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAP--GVPLGIHAHNDSGCAVANSLAAVEAGARQVQG 232 (524)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhc--CCeEEEEECCCCChHHHHHHHHHHhCCCEEEE
Confidence 5677777888888899999999999888889999999999998877 3444 3321 242 44788999999999999
Q ss_pred CCccccCcCCcc
Q psy14115 113 VFPTRTARFGSA 124 (319)
Q Consensus 113 ~~Ptr~Ar~G~a 124 (319)
+.--.-.|.|.+
T Consensus 233 Tl~GlGERaGNa 244 (524)
T PRK12344 233 TINGYGERCGNA 244 (524)
T ss_pred ecccccccccCc
Confidence 987666565543
No 85
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=78.95 E-value=5.5 Score=39.99 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=55.1
Q ss_pred eeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHH---HHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcC
Q psy14115 31 PIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKE---DFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALG 106 (319)
Q Consensus 31 giVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~---e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lG 106 (319)
.+|..|. +..+.++.+.+.+++|+.++|-++ -..+ .-.+++..+.+.+..+.|.++- |+-++.||+.++++|
T Consensus 247 pvivKgV---~s~~dA~~a~~~Gvd~I~Vs~hGG-r~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLG 322 (381)
T PRK11197 247 PMVIKGI---LDPEDARDAVRFGADGIVVSNHGG-RQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALG 322 (381)
T ss_pred CEEEEec---CCHHHHHHHHhCCCCEEEECCCCC-CCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcC
Confidence 3555555 556678888889999999988533 2111 1123444444444456788876 689999999999999
Q ss_pred CcEeecCCcc
Q psy14115 107 ADMFDCVFPT 116 (319)
Q Consensus 107 vD~FD~~~Pt 116 (319)
.|..=+--|.
T Consensus 323 A~~V~iGr~~ 332 (381)
T PRK11197 323 ADTVLLGRAF 332 (381)
T ss_pred cCceeEhHHH
Confidence 9976554443
No 86
>PLN02535 glycolate oxidase
Probab=77.94 E-value=5.9 Score=39.55 Aligned_cols=84 Identities=21% Similarity=0.241 Sum_probs=54.1
Q ss_pred eeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCC---CHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcC
Q psy14115 31 PIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGE---AKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALG 106 (319)
Q Consensus 31 giVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge---~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lG 106 (319)
.+|..|. +..+-++.+.+.+++|+.+.|-++.. ... -...+..+.+.+..+.|.+.. |+.++.||+.++++|
T Consensus 225 PvivKgV---~~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~-t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalG 300 (364)
T PLN02535 225 PILIKGV---LTREDAIKAVEVGVAGIIVSNHGARQLDYSPA-TISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALG 300 (364)
T ss_pred CEEEecC---CCHHHHHHHHhcCCCEEEEeCCCcCCCCCChH-HHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcC
Confidence 3455554 23345777888999999998754321 111 123344444444456778876 689999999999999
Q ss_pred CcEeecCCcccc
Q psy14115 107 ADMFDCVFPTRT 118 (319)
Q Consensus 107 vD~FD~~~Ptr~ 118 (319)
.|.+=.--|...
T Consensus 301 A~aV~vGr~~l~ 312 (364)
T PLN02535 301 AQAVLVGRPVIY 312 (364)
T ss_pred CCEEEECHHHHh
Confidence 997765555443
No 87
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=77.85 E-value=35 Score=34.15 Aligned_cols=83 Identities=17% Similarity=0.065 Sum_probs=55.7
Q ss_pred CceeeeccCCCCHHHHHHHHHHHHhCCCceEEe------------CCCCCCCCHHHHHHHHHHhhcCCCCCCCeEe-cC-
Q psy14115 27 QNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAV------------GGLSGGEAKEDFWYSVLVSINCLPKDKPRYV-MG- 92 (319)
Q Consensus 27 q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aI------------gGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l-~G- 92 (319)
..+++-|.|..+++.-.+.++.+.+.+++++-| +|...+.+++.+.+++..+.+.. ++|..+ +.
T Consensus 100 ~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~--~~Pv~vKl~p 177 (420)
T PRK08318 100 RALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS--RLPVIVKLTP 177 (420)
T ss_pred ceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc--CCcEEEEcCC
Confidence 446666666536776677888887777776664 22334567888899999988765 477765 33
Q ss_pred -CCChHHHHH-HHHcCCcEee
Q psy14115 93 -IGFAVDLLI-CCALGADMFD 111 (319)
Q Consensus 93 -vg~P~~Il~-~V~lGvD~FD 111 (319)
+....++.. +.+.|+|-+-
T Consensus 178 ~~~~~~~~a~~~~~~Gadgi~ 198 (420)
T PRK08318 178 NITDIREPARAAKRGGADAVS 198 (420)
T ss_pred CcccHHHHHHHHHHCCCCEEE
Confidence 345566665 5678999654
No 88
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=76.78 E-value=9.2 Score=36.60 Aligned_cols=71 Identities=21% Similarity=0.195 Sum_probs=49.3
Q ss_pred HHHHHHHhCCCceEEeCCCCCCCC---HHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEeecCCc
Q psy14115 44 DCAHQMVEKDVNGFAVGGLSGGEA---KEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFDCVFP 115 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl~~ge~---~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~~~P 115 (319)
+.++.+.+.+++++.+.|-. |.. ...-++.+..+.+.++.+.|.+.. |+.++.+++.++++|+|.+=..-|
T Consensus 184 ~~a~~a~~~G~d~I~v~~~g-G~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~ 258 (299)
T cd02809 184 EDALRAVDAGADGIVVSNHG-GRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRP 258 (299)
T ss_pred HHHHHHHHCCCCEEEEcCCC-CCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHH
Confidence 34666777899999997632 221 112345565666666666788876 689999999999999997755443
No 89
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=75.35 E-value=37 Score=32.48 Aligned_cols=87 Identities=16% Similarity=-0.017 Sum_probs=56.9
Q ss_pred CceeeeccCCCCHHHHHHHHHHHHhC--CCceEEeC-----CC----------------CCCCC----HHHHHHHHHHhh
Q psy14115 27 QNIFPIVQGGLDEALRKDCAHQMVEK--DVNGFAVG-----GL----------------SGGEA----KEDFWYSVLVSI 79 (319)
Q Consensus 27 q~lfgiVqGG~~~dlR~~s~~~l~~~--~~~G~aIg-----Gl----------------~~ge~----~~e~~~ii~~~~ 79 (319)
-.++.=+-.+.+.+.-.+.++.+.+. +++|+.+- |+ .+|.+ +..-.+.|..+.
T Consensus 158 iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~ 237 (294)
T cd04741 158 IPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFR 237 (294)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHH
Confidence 34666665556554445556666666 77777741 10 01122 233456677777
Q ss_pred cCCCCCCCeEec-CCCChHHHHHHHHcCCcEeecC
Q psy14115 80 NCLPKDKPRYVM-GIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 80 ~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
+.++.+.|..-. ||.+++|+++++..|+|.+-..
T Consensus 238 ~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ 272 (294)
T cd04741 238 RLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVG 272 (294)
T ss_pred HhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEc
Confidence 888777888876 5899999999999999987553
No 90
>PLN02591 tryptophan synthase
Probab=75.16 E-value=40 Score=31.90 Aligned_cols=78 Identities=17% Similarity=0.136 Sum_probs=50.3
Q ss_pred eeeccCCCCHHHHHHHHHHHHhCCCceEEeC--CCCCCC--CHHHHHHHHHHhhcCCCCCCCeEe-cCCCChHHHHHHHH
Q psy14115 30 FPIVQGGLDEALRKDCAHQMVEKDVNGFAVG--GLSGGE--AKEDFWYSVLVSINCLPKDKPRYV-MGIGFAVDLLICCA 104 (319)
Q Consensus 30 fgiVqGG~~~dlR~~s~~~l~~~~~~G~aIg--Gl~~ge--~~~e~~~ii~~~~~~LP~dkPr~l-~Gvg~P~~Il~~V~ 104 (319)
...|.. ..++.|.+.+.... .+|= |.|+ |..+.. ..+++.+.++.+.+. .+.|.++ +|+.+|+++-.+..
T Consensus 135 I~lv~P-tt~~~ri~~ia~~~-~gFI-Y~Vs~~GvTG~~~~~~~~~~~~i~~vk~~--~~~Pv~vGFGI~~~e~v~~~~~ 209 (250)
T PLN02591 135 VLLTTP-TTPTERMKAIAEAS-EGFV-YLVSSTGVTGARASVSGRVESLLQELKEV--TDKPVAVGFGISKPEHAKQIAG 209 (250)
T ss_pred EEEeCC-CCCHHHHHHHHHhC-CCcE-EEeeCCCCcCCCcCCchhHHHHHHHHHhc--CCCceEEeCCCCCHHHHHHHHh
Confidence 334544 33355666665553 3333 4444 433321 245677778877775 3799998 78889999999999
Q ss_pred cCCcEeec
Q psy14115 105 LGADMFDC 112 (319)
Q Consensus 105 lGvD~FD~ 112 (319)
.|+|-+-.
T Consensus 210 ~GADGvIV 217 (250)
T PLN02591 210 WGADGVIV 217 (250)
T ss_pred cCCCEEEE
Confidence 99997544
No 91
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=74.74 E-value=30 Score=35.79 Aligned_cols=96 Identities=13% Similarity=0.163 Sum_probs=71.4
Q ss_pred ceeeeccCC-CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCC--CCCeEe--cC-CCC-hHHHH
Q psy14115 28 NIFPIVQGG-LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPK--DKPRYV--MG-IGF-AVDLL 100 (319)
Q Consensus 28 ~lfgiVqGG-~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~--dkPr~l--~G-vg~-P~~Il 100 (319)
..|+.--++ .+++--.+.++.+.+.+.+-+.+-...+...++++.+++..+.+.+|. +.|.-+ .. .|. -.+.+
T Consensus 133 v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANal 212 (494)
T TIGR00973 133 VEFSCEDAGRTEIPFLARIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSL 212 (494)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHH
Confidence 444444443 677788888888889999999999988889999999999999998875 233322 21 232 34788
Q ss_pred HHHHcCCcEeecCCccccCcCCc
Q psy14115 101 ICCALGADMFDCVFPTRTARFGS 123 (319)
Q Consensus 101 ~~V~lGvD~FD~~~Ptr~Ar~G~ 123 (319)
.++..|+|.+|++.--.--|.|.
T Consensus 213 aAv~aGa~~vd~tv~GlGERaGN 235 (494)
T TIGR00973 213 AAVQNGARQVECTINGIGERAGN 235 (494)
T ss_pred HHHHhCCCEEEEEeecccccccC
Confidence 99999999999987665544443
No 92
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=74.13 E-value=51 Score=32.44 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=50.5
Q ss_pred eccCCCCHHHHHHHHHHHHhCCCceEEeC-CCCC----------CCCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHH
Q psy14115 32 IVQGGLDEALRKDCAHQMVEKDVNGFAVG-GLSG----------GEAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDL 99 (319)
Q Consensus 32 iVqGG~~~dlR~~s~~~l~~~~~~G~aIg-Gl~~----------ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~I 99 (319)
+|-|..- -.+.++.+.+.+++|+.+| |.+. |-..-. ...|..+.+.. +.|.+.. |+-+..||
T Consensus 140 vi~GnV~---t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~-l~ai~ev~~a~--~~pVIadGGIr~~~Di 213 (321)
T TIGR01306 140 VIAGNVG---TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQ-LAALRWCAKAA--RKPIIADGGIRTHGDI 213 (321)
T ss_pred EEEecCC---CHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchH-HHHHHHHHHhc--CCeEEEECCcCcHHHH
Confidence 4555443 4456778888999999988 3221 111011 24555555544 4787776 68999999
Q ss_pred HHHHHcCCcEeecCCc
Q psy14115 100 LICCALGADMFDCVFP 115 (319)
Q Consensus 100 l~~V~lGvD~FD~~~P 115 (319)
..|+++|+|.+=.-.+
T Consensus 214 ~KALa~GAd~Vmig~~ 229 (321)
T TIGR01306 214 AKSIRFGASMVMIGSL 229 (321)
T ss_pred HHHHHcCCCEEeechh
Confidence 9999999996544333
No 93
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=73.58 E-value=19 Score=34.41 Aligned_cols=83 Identities=13% Similarity=0.026 Sum_probs=57.6
Q ss_pred eeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCc
Q psy14115 29 IFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGAD 108 (319)
Q Consensus 29 lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD 108 (319)
++.-+-++.+++.-.+.++.+.+.+++.+.+.-=.+.+.....++.++.+.+.++ .|..+-++.++.+...+...|+|
T Consensus 118 ~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~--~pvivK~v~s~~~a~~a~~~G~d 195 (299)
T cd02809 118 RWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWK--GPLILKGILTPEDALRAVDAGAD 195 (299)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcC--CCEEEeecCCHHHHHHHHHCCCC
Confidence 3333344446776677788777788888877432111111134567777777765 78887788999999999999999
Q ss_pred EeecC
Q psy14115 109 MFDCV 113 (319)
Q Consensus 109 ~FD~~ 113 (319)
.++..
T Consensus 196 ~I~v~ 200 (299)
T cd02809 196 GIVVS 200 (299)
T ss_pred EEEEc
Confidence 99876
No 94
>PRK13753 dihydropteroate synthase; Provisional
Probab=73.55 E-value=18 Score=34.96 Aligned_cols=75 Identities=9% Similarity=-0.040 Sum_probs=52.4
Q ss_pred CCC--CHHHHHHHHHHHHhCCCceEEeCCCCCCCC------HHHHH---HHHHHhhcCCCCCCCeEecCCCChHHHHHHH
Q psy14115 35 GGL--DEALRKDCAHQMVEKDVNGFAVGGLSGGEA------KEDFW---YSVLVSINCLPKDKPRYVMGIGFAVDLLICC 103 (319)
Q Consensus 35 GG~--~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~------~~e~~---~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V 103 (319)
||. +++.-.+-++++.+.+.+-.-|||-|.... .+|+. ++|+.+.+. +.| ...-.-.|.-+-.|+
T Consensus 18 Gg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~---~~~-ISIDT~~~~va~~al 93 (279)
T PRK13753 18 ESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ---MHR-VSIDSFQPETQRYAL 93 (279)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC---CCc-EEEECCCHHHHHHHH
Confidence 564 556777788889999999999999865321 34666 455555432 333 344557899999999
Q ss_pred HcCCcEeecC
Q psy14115 104 ALGADMFDCV 113 (319)
Q Consensus 104 ~lGvD~FD~~ 113 (319)
+.|+|++-.+
T Consensus 94 ~aGadiINDV 103 (279)
T PRK13753 94 KRGVGYLNDI 103 (279)
T ss_pred HcCCCEEEeC
Confidence 9999997554
No 95
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=72.76 E-value=19 Score=34.53 Aligned_cols=65 Identities=11% Similarity=0.002 Sum_probs=46.9
Q ss_pred HhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEeecCCccccCc
Q psy14115 50 VEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFDCVFPTRTAR 120 (319)
Q Consensus 50 ~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar 120 (319)
.+.+++...+.++ +.+++.++++.....-| +...-.. |+ +|.++....+.|||.+.+.+++..|.
T Consensus 199 ~~~GaDiI~LDn~----~~e~l~~~v~~~~~~~~-~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~sa~ 264 (273)
T PRK05848 199 MNAGADIVMCDNM----SVEEIKEVVAYRNANYP-HVLLEASGNI-TLENINAYAKSGVDAISSGSLIHQAT 264 (273)
T ss_pred HHcCCCEEEECCC----CHHHHHHHHHHhhccCC-CeEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcCCC
Confidence 4567888887765 67888888876432222 2223344 46 99999999999999999999887653
No 96
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=72.42 E-value=11 Score=38.01 Aligned_cols=79 Identities=23% Similarity=0.255 Sum_probs=52.2
Q ss_pred eccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCC--HHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCc
Q psy14115 32 IVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEA--KEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGAD 108 (319)
Q Consensus 32 iVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~--~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD 108 (319)
+|..|. +..+-++.+.+.+++|+.++|-++... .---...|..+.+.++.+.|.++- |+-+..||+.++++|.|
T Consensus 256 vivKgV---~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~ 332 (383)
T cd03332 256 IVLKGI---LHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAK 332 (383)
T ss_pred EEEecC---CCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCC
Confidence 444444 344567777889999999987543211 011233444444445556788875 78999999999999999
Q ss_pred EeecC
Q psy14115 109 MFDCV 113 (319)
Q Consensus 109 ~FD~~ 113 (319)
..=.-
T Consensus 333 ~v~iG 337 (383)
T cd03332 333 AVLIG 337 (383)
T ss_pred EEEEc
Confidence 76443
No 97
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=72.23 E-value=25 Score=33.84 Aligned_cols=85 Identities=16% Similarity=0.161 Sum_probs=59.1
Q ss_pred CCceeeec--------cCCCC--HHHHHHHHHHHHhCCCceEEeCCCCC--CC----CHHHHHH---HHHHhhcCCCCCC
Q psy14115 26 TQNIFPIV--------QGGLD--EALRKDCAHQMVEKDVNGFAVGGLSG--GE----AKEDFWY---SVLVSINCLPKDK 86 (319)
Q Consensus 26 ~q~lfgiV--------qGG~~--~dlR~~s~~~l~~~~~~G~aIgGl~~--ge----~~~e~~~---ii~~~~~~LP~dk 86 (319)
...++||+ -||.+ .+.-.+-++++.+.|.+-.-|||-|. |. ..+|+.+ +|+.+.+.. +.
T Consensus 14 ~~~imGIlNvTpDSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~--~~ 91 (282)
T PRK11613 14 HPHVMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF--EV 91 (282)
T ss_pred CceEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC--CC
Confidence 35688888 67754 56666678888899999999998764 21 2356555 445555433 33
Q ss_pred CeEecCCCChHHHHHHHHcCCcEeecC
Q psy14115 87 PRYVMGIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 87 Pr~l~Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
| ...-.-.|.-+-.|++.|+|++-.+
T Consensus 92 ~-ISIDT~~~~va~~AL~~GadiINDI 117 (282)
T PRK11613 92 W-ISVDTSKPEVIRESAKAGAHIINDI 117 (282)
T ss_pred e-EEEECCCHHHHHHHHHcCCCEEEEC
Confidence 3 3445578999999999999998444
No 98
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=71.97 E-value=42 Score=31.70 Aligned_cols=41 Identities=20% Similarity=0.120 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEeecC
Q psy14115 71 FWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 71 ~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
.++.+..+.+.+ +.|.... |+-+|.++..++..|+|++-..
T Consensus 219 ~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~ig 260 (296)
T cd04740 219 ALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVG 260 (296)
T ss_pred HHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 345666666655 4777765 5789999999999999987553
No 99
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=71.90 E-value=6 Score=39.20 Aligned_cols=76 Identities=24% Similarity=0.223 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhCCCceEEeCCCCCCC--CHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEeecCCcc
Q psy14115 41 LRKDCAHQMVEKDVNGFAVGGLSGGE--AKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFDCVFPT 116 (319)
Q Consensus 41 lR~~s~~~l~~~~~~G~aIgGl~~ge--~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~~~Pt 116 (319)
+..+.++.+.+.+++|+.++|-++-. ...--.+.+..+.+.++.+.|.++- |+-++.||+.++++|+|.+=..-|.
T Consensus 234 ~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~ 312 (356)
T PF01070_consen 234 LSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPF 312 (356)
T ss_dssp -SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHH
T ss_pred ccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHH
Confidence 56677888889999999999753310 0011233344444445677788775 7899999999999999987554443
No 100
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=71.44 E-value=17 Score=33.28 Aligned_cols=85 Identities=14% Similarity=0.130 Sum_probs=54.6
Q ss_pred CceeeeccCCC-CHHHH----HHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC-CCChHHHH
Q psy14115 27 QNIFPIVQGGL-DEALR----KDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG-IGFAVDLL 100 (319)
Q Consensus 27 q~lfgiVqGG~-~~dlR----~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G-vg~P~~Il 100 (319)
-+++|++--.+ +.+.+ .+.++++.+.+.+-.|+.+..-.-+ +.+.+++..+.+.. +++|+ +++-++..
T Consensus 33 lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp-~~l~~li~~i~~~~-----~l~MADist~ee~~ 106 (192)
T PF04131_consen 33 LPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRP-ETLEELIREIKEKY-----QLVMADISTLEEAI 106 (192)
T ss_dssp S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S-S-HHHHHHHHHHCT-----SEEEEE-SSHHHHH
T ss_pred CCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCC-cCHHHHHHHHHHhC-----cEEeeecCCHHHHH
Confidence 45777765321 11222 5688999999999999999643333 77778888877755 67775 79999999
Q ss_pred HHHHcCCcEeecCCccc
Q psy14115 101 ICCALGADMFDCVFPTR 117 (319)
Q Consensus 101 ~~V~lGvD~FD~~~Ptr 117 (319)
.+.++|+|++-++..-.
T Consensus 107 ~A~~~G~D~I~TTLsGY 123 (192)
T PF04131_consen 107 NAAELGFDIIGTTLSGY 123 (192)
T ss_dssp HHHHTT-SEEE-TTTTS
T ss_pred HHHHcCCCEEEcccccC
Confidence 99999999987775433
No 101
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=70.94 E-value=26 Score=35.58 Aligned_cols=82 Identities=13% Similarity=0.052 Sum_probs=60.1
Q ss_pred CceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcC
Q psy14115 27 QNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALG 106 (319)
Q Consensus 27 q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lG 106 (319)
+.+.+.-.| ..++ -.+-++.|.+.+++-++|.... | +.+.+.++|+.+....| +.+..+-++.++++...++.+|
T Consensus 141 ~l~v~aavg-~~~~-~~~~v~~lv~aGvDvI~iD~a~-g-~~~~~~~~v~~ik~~~p-~~~vi~g~V~T~e~a~~l~~aG 215 (404)
T PRK06843 141 KLRVGAAVS-IDID-TIERVEELVKAHVDILVIDSAH-G-HSTRIIELVKKIKTKYP-NLDLIAGNIVTKEAALDLISVG 215 (404)
T ss_pred CeEEEEEEe-CCHH-HHHHHHHHHhcCCCEEEEECCC-C-CChhHHHHHHHHHhhCC-CCcEEEEecCCHHHHHHHHHcC
Confidence 445554444 5555 5567888899999999986644 2 24567788888888887 4554444789999999999999
Q ss_pred CcEeecC
Q psy14115 107 ADMFDCV 113 (319)
Q Consensus 107 vD~FD~~ 113 (319)
+|.+..-
T Consensus 216 aD~I~vG 222 (404)
T PRK06843 216 ADCLKVG 222 (404)
T ss_pred CCEEEEC
Confidence 9998743
No 102
>PRK09389 (R)-citramalate synthase; Provisional
Probab=70.77 E-value=31 Score=35.64 Aligned_cols=95 Identities=16% Similarity=0.097 Sum_probs=70.8
Q ss_pred eeeeccCC-CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCe--EecC-CCC-hHHHHHHH
Q psy14115 29 IFPIVQGG-LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPR--YVMG-IGF-AVDLLICC 103 (319)
Q Consensus 29 lfgiVqGG-~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr--~l~G-vg~-P~~Il~~V 103 (319)
-|.+--++ .+++.-.+.++.+.+.+.+-+.+-...+...+.++.+++..+.+.++ .|. |... .|. ..+.+.++
T Consensus 131 ~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~~--v~l~~H~HND~GlAvANalaAv 208 (488)
T PRK09389 131 ELSGEDASRADLDFLKELYKAGIEAGADRICFCDTVGILTPEKTYELFKRLSELVK--GPVSIHCHNDFGLAVANTLAAL 208 (488)
T ss_pred EEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhhcC--CeEEEEecCCccHHHHHHHHHH
Confidence 34444443 56777778888888999999999998888899999999999887665 333 3321 232 44788999
Q ss_pred HcCCcEeecCCccccCcCCcce
Q psy14115 104 ALGADMFDCVFPTRTARFGSAL 125 (319)
Q Consensus 104 ~lGvD~FD~~~Ptr~Ar~G~al 125 (319)
..|+|.+|++.--.-.|.|.+=
T Consensus 209 ~aGa~~Vd~Ti~GiGERaGNa~ 230 (488)
T PRK09389 209 AAGADQVHVTINGIGERAGNAS 230 (488)
T ss_pred HcCCCEEEEEcccccccccCcc
Confidence 9999999999877666666543
No 103
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=69.76 E-value=29 Score=32.30 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=59.7
Q ss_pred CceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCC---ChHHHHHHH
Q psy14115 27 QNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIG---FAVDLLICC 103 (319)
Q Consensus 27 q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg---~P~~Il~~V 103 (319)
+.+++|+-+ .+++.=..-++.+.+-++.-+-|-=-+ ..-.+.++......+..-|..+.|+| +|++.-.++
T Consensus 15 ~~vi~Vvr~-~~~~~a~~~~~al~~gGi~~iEiT~~t-----p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~ 88 (222)
T PRK07114 15 TGMVPVFYH-ADVEVAKKVIKACYDGGARVFEFTNRG-----DFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYI 88 (222)
T ss_pred CCEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCC-----CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHH
Confidence 569999996 788877888899999888877765422 12233444444444445567888988 488999999
Q ss_pred HcCCcEeecCCc
Q psy14115 104 ALGADMFDCVFP 115 (319)
Q Consensus 104 ~lGvD~FD~~~P 115 (319)
..|.+.+-++--
T Consensus 89 ~aGA~FiVsP~~ 100 (222)
T PRK07114 89 QLGANFIVTPLF 100 (222)
T ss_pred HcCCCEEECCCC
Confidence 999999876643
No 104
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=69.22 E-value=57 Score=32.47 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHHhC--CCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC-CCChHHHHHHHHcCCcEe
Q psy14115 36 GLDEALRKDCAHQMVEK--DVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG-IGFAVDLLICCALGADMF 110 (319)
Q Consensus 36 G~~~dlR~~s~~~l~~~--~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G-vg~P~~Il~~V~lGvD~F 110 (319)
|..++-. +-++.|.+. +++-..|.-..+ ..+-+.+.|+++.+..| .+-.+-| |.+|++...++..|+|.+
T Consensus 103 G~~~~d~-er~~~L~~a~~~~d~iviD~AhG--hs~~~i~~ik~ir~~~p--~~~viaGNV~T~e~a~~Li~aGAD~i 175 (343)
T TIGR01305 103 GSSDNDL-EKMTSILEAVPQLKFICLDVANG--YSEHFVEFVKLVREAFP--EHTIMAGNVVTGEMVEELILSGADIV 175 (343)
T ss_pred ccCHHHH-HHHHHHHhcCCCCCEEEEECCCC--cHHHHHHHHHHHHhhCC--CCeEEEecccCHHHHHHHHHcCCCEE
Confidence 4554433 334555555 477787765432 45667888999999888 3566678 999999999999999987
No 105
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=69.18 E-value=20 Score=37.23 Aligned_cols=80 Identities=11% Similarity=0.002 Sum_probs=57.5
Q ss_pred CCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHc
Q psy14115 26 TQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCAL 105 (319)
Q Consensus 26 ~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~l 105 (319)
.+.+.|.-.| ..++- .+.+++|.+.+++-.+|... .| .....|+.|+.+.+..| +.+...=++.++++...++++
T Consensus 235 ~~l~vgaavg-~~~~~-~~r~~~l~~ag~d~i~iD~~-~g-~~~~~~~~i~~ik~~~p-~~~vi~g~v~t~e~a~~a~~a 309 (505)
T PLN02274 235 GKLLVGAAIG-TRESD-KERLEHLVKAGVDVVVLDSS-QG-DSIYQLEMIKYIKKTYP-ELDVIGGNVVTMYQAQNLIQA 309 (505)
T ss_pred CCEEEEEEEc-CCccH-HHHHHHHHHcCCCEEEEeCC-CC-CcHHHHHHHHHHHHhCC-CCcEEEecCCCHHHHHHHHHc
Confidence 3556665554 33332 45678888899999999874 33 34556788888888887 443434369999999999999
Q ss_pred CCcEe
Q psy14115 106 GADMF 110 (319)
Q Consensus 106 GvD~F 110 (319)
|+|.+
T Consensus 310 GaD~i 314 (505)
T PLN02274 310 GVDGL 314 (505)
T ss_pred CcCEE
Confidence 99988
No 106
>PLN02826 dihydroorotate dehydrogenase
Probab=69.03 E-value=1e+02 Score=31.31 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=55.2
Q ss_pred CceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCC--------------------CCCCCCHHHHHHHHHHhhcCCCCCC
Q psy14115 27 QNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGG--------------------LSGGEAKEDFWYSVLVSINCLPKDK 86 (319)
Q Consensus 27 q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgG--------------------l~~ge~~~e~~~ii~~~~~~LP~dk 86 (319)
..+|.=+-.-...+--..-++.+.+.+++|+++.. +|+..-+..-.++|..+...++.+.
T Consensus 263 ~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~i 342 (409)
T PLN02826 263 PPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKI 342 (409)
T ss_pred CceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCC
Confidence 34565554433332223345556667888876543 3222212234567777777787778
Q ss_pred CeEec-CCCChHHHHHHHHcCCcEeec
Q psy14115 87 PRYVM-GIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 87 Pr~l~-Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
|..-. ||.+.+|+++.+.+|+|++-.
T Consensus 343 pIIgvGGI~sg~Da~e~i~AGAs~VQv 369 (409)
T PLN02826 343 PLVGCGGVSSGEDAYKKIRAGASLVQL 369 (409)
T ss_pred cEEEECCCCCHHHHHHHHHhCCCeeee
Confidence 88866 689999999999999998764
No 107
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=68.87 E-value=60 Score=30.85 Aligned_cols=43 Identities=9% Similarity=0.031 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEe-cCCCChHHHHHHHHcCCcEeec
Q psy14115 68 KEDFWYSVLVSINCLPKDKPRYV-MGIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 68 ~~e~~~ii~~~~~~LP~dkPr~l-~Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
.+++.+.++.+.... ++|..+ +|+.+|+++-.+...|+|.+-.
T Consensus 187 ~~~~~~~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GADGvVV 230 (263)
T CHL00200 187 DKKLKKLIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIVI 230 (263)
T ss_pred cHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCCEEEE
Confidence 356777777777754 689998 7888999999999999997643
No 108
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=68.57 E-value=68 Score=31.15 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=60.4
Q ss_pred HHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCC--------CCCCCCHHHHHHHHHHhhcCCC
Q psy14115 12 RWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGG--------LSGGEAKEDFWYSVLVSINCLP 83 (319)
Q Consensus 12 rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgG--------l~~ge~~~e~~~ii~~~~~~LP 83 (319)
.|++......++. ...+++-|-| ...+.-.+.++.+.+.+++++-|-- ..++...+.++++++.+.+.+
T Consensus 88 ~~~~~i~~~~~~~-~~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~- 164 (334)
T PRK07565 88 EYLELIRRAKEAV-DIPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV- 164 (334)
T ss_pred HHHHHHHHHHHhc-CCcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-
Confidence 4555433322222 2467777755 5666666778888777888888721 122222345778889888876
Q ss_pred CCCCeEec-C--CCChHHHHH-HHHcCCcEeec
Q psy14115 84 KDKPRYVM-G--IGFAVDLLI-CCALGADMFDC 112 (319)
Q Consensus 84 ~dkPr~l~-G--vg~P~~Il~-~V~lGvD~FD~ 112 (319)
+.|..+- + +..+.++.. +...|+|.+..
T Consensus 165 -~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 165 -SIPVAVKLSPYFSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred -CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEE
Confidence 4788763 3 345567765 45799998865
No 109
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=68.36 E-value=18 Score=32.65 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=44.6
Q ss_pred HHHHhCCCceEEeCCCCC-CCCH---HHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEeecCCccccC
Q psy14115 47 HQMVEKDVNGFAVGGLSG-GEAK---EDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFDCVFPTRTA 119 (319)
Q Consensus 47 ~~l~~~~~~G~aIgGl~~-ge~~---~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~~~Ptr~A 119 (319)
+.+.+.+.+++.+.+... |... ...++.+..+.+.+ +.|.++. |+.+|.++..++..|+|.++.......+
T Consensus 116 ~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~ 191 (236)
T cd04730 116 RKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLAT 191 (236)
T ss_pred HHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcC
Confidence 334456777777644321 1111 12345566555544 4788874 7889999999999999998876544333
No 110
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=68.23 E-value=39 Score=35.01 Aligned_cols=82 Identities=13% Similarity=-0.025 Sum_probs=60.0
Q ss_pred CCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHc
Q psy14115 26 TQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCAL 105 (319)
Q Consensus 26 ~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~l 105 (319)
...+.|...| ..++. .+-++.|.+.+++-++|--. .|.+.. .++.|+.+.+..| +.|...=.+.++++...++++
T Consensus 228 GrL~Vgaavg-~~~~~-~~~~~~l~~ag~d~i~id~a-~G~s~~-~~~~i~~ik~~~~-~~~v~aG~V~t~~~a~~~~~a 302 (495)
T PTZ00314 228 GQLLVGAAIS-TRPED-IERAAALIEAGVDVLVVDSS-QGNSIY-QIDMIKKLKSNYP-HVDIIAGNVVTADQAKNLIDA 302 (495)
T ss_pred CCEEEEEEEC-CCHHH-HHHHHHHHHCCCCEEEEecC-CCCchH-HHHHHHHHHhhCC-CceEEECCcCCHHHHHHHHHc
Confidence 4567777776 44444 66778888999999998764 333333 3678888888777 455555458999999999999
Q ss_pred CCcEeec
Q psy14115 106 GADMFDC 112 (319)
Q Consensus 106 GvD~FD~ 112 (319)
|+|.+..
T Consensus 303 Gad~I~v 309 (495)
T PTZ00314 303 GADGLRI 309 (495)
T ss_pred CCCEEEE
Confidence 9999863
No 111
>PF12167 DUF3596: Domain of unknown function (DUF3596); InterPro: IPR022000 This N-terminal domain is found in Bacteriophage P27p02, it is functionally uncharacterised, though it is considered to be an integrase. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome. This domain is found in related proteins in other bacteriophage, and prophage regions of bacterial genomes. The domain is approximately 90 amino acids in length and is found is associated with the C-terminal domain characterised by PF00589 from PFAM.
Probab=67.88 E-value=6 Score=29.59 Aligned_cols=25 Identities=28% Similarity=0.201 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChH
Q psy14115 177 SVHNIAFQMRLMREIRESIKEQRFP 201 (319)
Q Consensus 177 tiHNl~~~~~l~~~iR~aI~~g~f~ 201 (319)
|-.|+....++.++|...|..|+|+
T Consensus 31 T~~N~k~a~~~~~~I~~~I~~G~Fd 55 (64)
T PF12167_consen 31 TPANRKKAERLRAEIEAEIALGTFD 55 (64)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 5669999999999999999999998
No 112
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=67.80 E-value=42 Score=31.15 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=60.2
Q ss_pred CceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCC---hHHHHHHH
Q psy14115 27 QNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGF---AVDLLICC 103 (319)
Q Consensus 27 q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~---P~~Il~~V 103 (319)
+.+.+|+.| .++|.=...++.+.+-+++-.-|-=- ...-.+.|..+.+..| +.+.|.|| |+++-.++
T Consensus 13 ~~vI~Vlr~-~~~e~a~~~a~Ali~gGi~~IEITl~-----sp~a~e~I~~l~~~~p----~~lIGAGTVL~~~q~~~a~ 82 (211)
T COG0800 13 QPVVPVIRG-DDVEEALPLAKALIEGGIPAIEITLR-----TPAALEAIRALAKEFP----EALIGAGTVLNPEQARQAI 82 (211)
T ss_pred CCeeEEEEe-CCHHHHHHHHHHHHHcCCCeEEEecC-----CCCHHHHHHHHHHhCc----ccEEccccccCHHHHHHHH
Confidence 679999996 88899999999999988887766532 2334566666666665 77889885 99999999
Q ss_pred HcCCcEeecC
Q psy14115 104 ALGADMFDCV 113 (319)
Q Consensus 104 ~lGvD~FD~~ 113 (319)
+.|.|.+-++
T Consensus 83 ~aGa~fiVsP 92 (211)
T COG0800 83 AAGAQFIVSP 92 (211)
T ss_pred HcCCCEEECC
Confidence 9999987654
No 113
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=67.78 E-value=45 Score=32.45 Aligned_cols=70 Identities=30% Similarity=0.436 Sum_probs=46.5
Q ss_pred HHHHHHHHhCCCceEEeCCCCCC-----C-----CH--------HH----HHHHHHHhhcCCCCCCCeEec-CCCChHHH
Q psy14115 43 KDCAHQMVEKDVNGFAVGGLSGG-----E-----AK--------ED----FWYSVLVSINCLPKDKPRYVM-GIGFAVDL 99 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgGl~~g-----e-----~~--------~e----~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~I 99 (319)
.+-++.+.+.+++++.++|.++. | .. .+ ....+..+.+..+ +.|...- |+-++.+|
T Consensus 192 ~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~~dv 270 (326)
T cd02811 192 RETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNGLDI 270 (326)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHH
Confidence 35677788899999999885321 0 00 00 1233334444444 5777765 68999999
Q ss_pred HHHHHcCCcEeecC
Q psy14115 100 LICCALGADMFDCV 113 (319)
Q Consensus 100 l~~V~lGvD~FD~~ 113 (319)
..++++|+|.+=..
T Consensus 271 ~kal~lGAd~V~i~ 284 (326)
T cd02811 271 AKALALGADLVGMA 284 (326)
T ss_pred HHHHHhCCCEEEEc
Confidence 99999999987554
No 114
>PLN02321 2-isopropylmalate synthase
Probab=67.75 E-value=53 Score=35.30 Aligned_cols=97 Identities=13% Similarity=0.099 Sum_probs=72.5
Q ss_pred ceeeeccCC-CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCC--CCe--EecC-CCC-hHHHH
Q psy14115 28 NIFPIVQGG-LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKD--KPR--YVMG-IGF-AVDLL 100 (319)
Q Consensus 28 ~lfgiVqGG-~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~d--kPr--~l~G-vg~-P~~Il 100 (319)
.-|+.--++ .+++--.+.++.+.+.+.+-+.|....+...++++.+++..+.+.+|.. .+. |... .|. -.+.+
T Consensus 227 v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANsl 306 (632)
T PLN02321 227 VEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTL 306 (632)
T ss_pred EEEecccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHH
Confidence 455554333 7788888889999999999999999888889999999999999988853 222 3321 232 33788
Q ss_pred HHHHcCCcEeecCCccccCcCCcc
Q psy14115 101 ICCALGADMFDCVFPTRTARFGSA 124 (319)
Q Consensus 101 ~~V~lGvD~FD~~~Ptr~Ar~G~a 124 (319)
.++..|+|.||++.--.-.|.|.+
T Consensus 307 aAv~AGA~~Vd~TinGlGERaGNa 330 (632)
T PLN02321 307 AGAHAGARQVEVTINGIGERAGNA 330 (632)
T ss_pred HHHHhCCCEEEEecccccccccCc
Confidence 999999999999887655554443
No 115
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=66.70 E-value=20 Score=34.33 Aligned_cols=42 Identities=19% Similarity=0.013 Sum_probs=34.7
Q ss_pred HHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEee
Q psy14115 70 DFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFD 111 (319)
Q Consensus 70 e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD 111 (319)
--++.|..+.+.++.+.|.... ||-+++|+..++..|+|.+-
T Consensus 237 ~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~ 279 (299)
T cd02940 237 IALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQ 279 (299)
T ss_pred HHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChhe
Confidence 3478888888888767888876 68999999999999999764
No 116
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=66.33 E-value=46 Score=34.81 Aligned_cols=87 Identities=11% Similarity=0.079 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCC-CCeEecC-CCC-hHHHHHHHHcCCcEeecC
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKD-KPRYVMG-IGF-AVDLLICCALGADMFDCV 113 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~d-kPr~l~G-vg~-P~~Il~~V~lGvD~FD~~ 113 (319)
.+++--.+.++.+.+.+.+-+.|-...+...+.++.+++..+.+.+|.. --.|... .|. -.+-+.++..|+|.+|++
T Consensus 151 ~~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~Vd~T 230 (526)
T TIGR00977 151 ANPEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMVQGT 230 (526)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEEEEe
Confidence 6788888889999999999999999888889999999999999988831 1123331 243 346889999999999998
Q ss_pred CccccCcCCc
Q psy14115 114 FPTRTARFGS 123 (319)
Q Consensus 114 ~Ptr~Ar~G~ 123 (319)
.--.--|.|.
T Consensus 231 inGiGERaGN 240 (526)
T TIGR00977 231 INGYGERCGN 240 (526)
T ss_pred cccccCccCC
Confidence 8765555443
No 117
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=66.21 E-value=24 Score=33.62 Aligned_cols=63 Identities=16% Similarity=0.080 Sum_probs=47.4
Q ss_pred HhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCc
Q psy14115 50 VEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTAR 120 (319)
Q Consensus 50 ~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar 120 (319)
.+.+++.+.+|.++ .+++.++++. ++.+.|....|==+|.++....+.|+|.+-...+|..|.
T Consensus 199 ~~~gaDyI~ld~~~----~e~l~~~~~~----~~~~ipi~AiGGI~~~ni~~~a~~Gvd~Iav~sl~~~a~ 261 (268)
T cd01572 199 LEAGADIIMLDNMS----PEELREAVAL----LKGRVLLEASGGITLENIRAYAETGVDYISVGALTHSAP 261 (268)
T ss_pred HHcCCCEEEECCcC----HHHHHHHHHH----cCCCCcEEEECCCCHHHHHHHHHcCCCEEEEEeeecCCC
Confidence 45678888888764 4555555543 444677888865589999999999999999999887553
No 118
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=65.48 E-value=19 Score=36.00 Aligned_cols=72 Identities=19% Similarity=0.176 Sum_probs=47.3
Q ss_pred HHHHHHHHhCCCceEEeCCCCCCCCHH---HHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEeecCCccc
Q psy14115 43 KDCAHQMVEKDVNGFAVGGLSGGEAKE---DFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFDCVFPTR 117 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgGl~~ge~~~---e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~~~Ptr 117 (319)
.+-++.+.+.+++|+.+++-++. ..+ .-.+.+..+.+..+ .|.++. |+-++.||+.++++|.|.+=.--|..
T Consensus 247 ~eda~~a~~~G~d~I~VSnhGGr-qld~~~~~~~~L~ei~~~~~--~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l 322 (361)
T cd04736 247 AEDAKRCIELGADGVILSNHGGR-QLDDAIAPIEALAEIVAATY--KPVLIDSGIRRGSDIVKALALGANAVLLGRATL 322 (361)
T ss_pred HHHHHHHHHCCcCEEEECCCCcC-CCcCCccHHHHHHHHHHHhC--CeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 34566677789999998875432 111 11223333333332 677776 78999999999999999876555544
No 119
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=64.62 E-value=17 Score=31.16 Aligned_cols=53 Identities=13% Similarity=0.288 Sum_probs=38.9
Q ss_pred CCCCCCCCcccCcCCHHHHhhhhcCChhHhhHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhCC
Q psy14115 144 PIDNQCPCSTCARYTRAYLHHIATVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMKDAYP 213 (319)
Q Consensus 144 Pi~~~C~C~tC~~~tRAYLhHLl~~E~la~~LLtiHNl~~~~~l~~~iR~aI~~g~f~~~v~~f~~~~~~ 213 (319)
-|...=-|++|+|-|=+-=++ ..=..+-+.||+.|.+|.=++-+.+|+...|+
T Consensus 36 ~L~~~LRC~vCqnqsiadS~a-----------------~iA~dmR~~Vr~~i~~G~Sd~eI~~~~v~RYG 88 (126)
T TIGR03147 36 ALAKSLRCPQCQNQNLVESNS-----------------PIAYDLRHEVYSMVNEGKSNQQIIDFMTARFG 88 (126)
T ss_pred HHHHhCCCCCCCCCChhhcCC-----------------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 344566799999876542211 33345567899999999999999999988776
No 120
>PHA01745 hypothetical protein
Probab=64.52 E-value=2.5 Score=40.70 Aligned_cols=20 Identities=35% Similarity=0.733 Sum_probs=18.5
Q ss_pred cCCCCccccCCCCceeEecc
Q psy14115 283 MGWKRALLTDSGGFQMVSLL 302 (319)
Q Consensus 283 ~~w~~~ilTDSGgfQ~~sl~ 302 (319)
.+|.+-+=-||||||+++-+
T Consensus 31 l~~e~E~WVDSGGYQil~~g 50 (306)
T PHA01745 31 ITWKNETWVDSGGYQIMLYN 50 (306)
T ss_pred ccccceEEEecCchhhhhcC
Confidence 78999999999999998876
No 121
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=63.92 E-value=36 Score=33.52 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHHhCCC--ceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeec
Q psy14115 36 GLDEALRKDCAHQMVEKDV--NGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 36 G~~~dlR~~s~~~l~~~~~--~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
|..++ ..+-+++|.+.++ +-.+|.-..+ ..+...++|+.+.+..| +.|...=.++++++...++.+|+|.++.
T Consensus 93 g~~~~-~~~~~~~Lv~ag~~~d~i~iD~a~g--h~~~~~e~I~~ir~~~p-~~~vi~g~V~t~e~a~~l~~aGad~i~v 167 (326)
T PRK05458 93 GVKDD-EYDFVDQLAAEGLTPEYITIDIAHG--HSDSVINMIQHIKKHLP-ETFVIAGNVGTPEAVRELENAGADATKV 167 (326)
T ss_pred cCCHH-HHHHHHHHHhcCCCCCEEEEECCCC--chHHHHHHHHHHHhhCC-CCeEEEEecCCHHHHHHHHHcCcCEEEE
Confidence 34443 3455677788754 8888866542 34567777888888776 3444332399999999999999999873
No 122
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=63.52 E-value=25 Score=34.92 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=47.9
Q ss_pred HHHHHHHhCCCceEEeCCCCCCCC---HHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEeecCCcc
Q psy14115 44 DCAHQMVEKDVNGFAVGGLSGGEA---KEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFDCVFPT 116 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl~~ge~---~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~~~Pt 116 (319)
+-++.+.+.+++|+.+.|-. |.. ..--++.+..+.+.+..+.|.+.. |+-++.||+.++++|+|.+=.--|.
T Consensus 233 ~dA~~a~~~G~d~I~vsnhG-Gr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~ 308 (351)
T cd04737 233 EDADVAINAGADGIWVSNHG-GRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPV 308 (351)
T ss_pred HHHHHHHHcCCCEEEEeCCC-CccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 34556667899999996532 211 111234555666666666788876 6899999999999999965443333
No 123
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=63.43 E-value=94 Score=29.26 Aligned_cols=42 Identities=21% Similarity=0.074 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhcCCCCCCCeEe-cCCCChHHHHHHHHcCCcEeec
Q psy14115 69 EDFWYSVLVSINCLPKDKPRYV-MGIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 69 ~e~~~ii~~~~~~LP~dkPr~l-~Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
.+..+.++.+.+..+ .|..+ .|+.+|+++-.+.+.|+|.+-.
T Consensus 184 ~~~~~~i~~lr~~~~--~pi~vgfGI~~~e~~~~~~~~GADgvVv 226 (256)
T TIGR00262 184 SALNELVKRLKAYSA--KPVLVGFGISKPEQVKQAIDAGADGVIV 226 (256)
T ss_pred hhHHHHHHHHHhhcC--CCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 456777777777643 57777 6788999999999999997643
No 124
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=63.30 E-value=32 Score=31.48 Aligned_cols=80 Identities=14% Similarity=0.111 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeCCCCCCC---CHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecC
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVGGLSGGE---AKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge---~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
+..+...+-++.|.+.+++.+-+|+..... ..++.++++..+.+..| +.+..++......++-.+...|+|.+-..
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~-~~~~~~l~~~~~~~i~~a~~~g~~~i~i~ 94 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVP-NVKLQALVRNREKGIERALEAGVDEVRIF 94 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccC-CcEEEEEccCchhhHHHHHhCCcCEEEEE
Confidence 567788889999999999999999975430 01445667777776665 33333666555888999999999987666
Q ss_pred Cccc
Q psy14115 114 FPTR 117 (319)
Q Consensus 114 ~Ptr 117 (319)
.+.-
T Consensus 95 ~~~s 98 (265)
T cd03174 95 DSAS 98 (265)
T ss_pred EecC
Confidence 6544
No 125
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=62.07 E-value=14 Score=33.18 Aligned_cols=60 Identities=10% Similarity=0.123 Sum_probs=41.0
Q ss_pred HHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccc
Q psy14115 45 CAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117 (319)
Q Consensus 45 s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr 117 (319)
-++...+.+.+|..++++. .+ +++.+.. . .+.+++|+.+|.++..+...|+|.+=. |||.
T Consensus 76 ~~~~A~~~gAdgv~~p~~~----~~----~~~~~~~-~---~~~~i~G~~t~~e~~~A~~~Gadyv~~-Fpt~ 135 (187)
T PRK07455 76 DLEEAIAAGAQFCFTPHVD----PE----LIEAAVA-Q---DIPIIPGALTPTEIVTAWQAGASCVKV-FPVQ 135 (187)
T ss_pred HHHHHHHcCCCEEECCCCC----HH----HHHHHHH-c---CCCEEcCcCCHHHHHHHHHCCCCEEEE-CcCC
Confidence 3444456788898888763 12 2222221 1 124678999999999999999999876 9984
No 126
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=61.97 E-value=40 Score=32.92 Aligned_cols=69 Identities=26% Similarity=0.321 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCCceEEeCCCCCCCCH-----------------HH----HHHHHHHhhcCCCCCCCeEec-CCCChHHHH
Q psy14115 43 KDCAHQMVEKDVNGFAVGGLSGGEAK-----------------ED----FWYSVLVSINCLPKDKPRYVM-GIGFAVDLL 100 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgGl~~ge~~-----------------~e----~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il 100 (319)
.+.++.+.+.+++++.++|-+ |.+. .+ ..+.+..+.+ +..+.|.... |+-+|.++.
T Consensus 193 ~~~a~~L~~aGvd~I~Vsg~g-Gt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~-~~~~ipVIasGGI~~~~di~ 270 (333)
T TIGR02151 193 KEVAKLLADAGVSAIDVAGAG-GTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRS-DAPDAPIIASGGLRTGLDVA 270 (333)
T ss_pred HHHHHHHHHcCCCEEEECCCC-CCcccchhhhcccccccchhhhcccHhHHHHHHHHHh-cCCCCeEEEECCCCCHHHHH
Confidence 356677778899999999843 3210 00 1123333333 2234677766 578999999
Q ss_pred HHHHcCCcEeecC
Q psy14115 101 ICCALGADMFDCV 113 (319)
Q Consensus 101 ~~V~lGvD~FD~~ 113 (319)
.++++|+|.+=..
T Consensus 271 kaLalGAd~V~ig 283 (333)
T TIGR02151 271 KAIALGADAVGMA 283 (333)
T ss_pred HHHHhCCCeehhh
Confidence 9999999976443
No 127
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=61.76 E-value=1.5e+02 Score=28.40 Aligned_cols=89 Identities=8% Similarity=-0.018 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHhC---CCc---eEEeCCCCCCCCHHHHHHHHHHhhcCCCCC--CC--eEecC-CCC-hHHHHHHHH
Q psy14115 37 LDEALRKDCAHQMVEK---DVN---GFAVGGLSGGEAKEDFWYSVLVSINCLPKD--KP--RYVMG-IGF-AVDLLICCA 104 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~---~~~---G~aIgGl~~ge~~~e~~~ii~~~~~~LP~d--kP--r~l~G-vg~-P~~Il~~V~ 104 (319)
.+++.-.+.++.+.+. +.+ -+.+....+-.++.++.+++..+.+.+|.. .| .|... .|. -.+.+.++.
T Consensus 153 ~~~~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~ 232 (284)
T cd07942 153 TELDFALEVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALL 232 (284)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHH
Confidence 6777777777777665 333 577888777778999999999998888753 23 23332 232 457899999
Q ss_pred cCCcEeecCCccccCcCCcce
Q psy14115 105 LGADMFDCVFPTRTARFGSAL 125 (319)
Q Consensus 105 lGvD~FD~~~Ptr~Ar~G~al 125 (319)
.|++.||+..--.-+|.|.+=
T Consensus 233 aG~~~id~~~~g~GeRaGN~~ 253 (284)
T cd07942 233 AGADRVEGTLFGNGERTGNVD 253 (284)
T ss_pred hCCCEEEeeCccCCccccchh
Confidence 999999966555444455443
No 128
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=61.08 E-value=1.4e+02 Score=28.33 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=54.4
Q ss_pred ceeeeccCCCCHHHHHHHHHHHHhC--CCceEEe--C-------CCCCCCCHHHHHHHHHHhhcCCCCCCCeEe-cCC--
Q psy14115 28 NIFPIVQGGLDEALRKDCAHQMVEK--DVNGFAV--G-------GLSGGEAKEDFWYSVLVSINCLPKDKPRYV-MGI-- 93 (319)
Q Consensus 28 ~lfgiVqGG~~~dlR~~s~~~l~~~--~~~G~aI--g-------Gl~~ge~~~e~~~ii~~~~~~LP~dkPr~l-~Gv-- 93 (319)
.+++-|. |.+++.-.++++.+.+. .++++-+ | |...+.+++...++++.+.+.. +.|..+ +..
T Consensus 92 pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~--~~pv~vKi~~~~ 168 (300)
T TIGR01037 92 PLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT--DVPVFAKLSPNV 168 (300)
T ss_pred cEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEECCCCh
Confidence 4555555 46777777888888764 3677765 2 3344567888899999998876 467665 332
Q ss_pred CChHHHH-HHHHcCCcEeec
Q psy14115 94 GFAVDLL-ICCALGADMFDC 112 (319)
Q Consensus 94 g~P~~Il-~~V~lGvD~FD~ 112 (319)
....++. .+.+.|+|.+..
T Consensus 169 ~~~~~~a~~l~~~G~d~i~v 188 (300)
T TIGR01037 169 TDITEIAKAAEEAGADGLTL 188 (300)
T ss_pred hhHHHHHHHHHHcCCCEEEE
Confidence 2234444 356799999864
No 129
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.91 E-value=56 Score=31.39 Aligned_cols=66 Identities=14% Similarity=0.066 Sum_probs=49.9
Q ss_pred HHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCcC
Q psy14115 48 QMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARF 121 (319)
Q Consensus 48 ~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~ 121 (319)
+..+.+.+.+.++.+ +++++.++++.. +++.|....|==++.++....+.|+|.+-..+++..++.
T Consensus 204 eA~~~gaD~I~LD~~----~~e~l~~~v~~~----~~~i~leAsGGIt~~ni~~~a~tGvD~Isvg~lt~s~~~ 269 (277)
T PRK05742 204 QALAAGADIVMLDEL----SLDDMREAVRLT----AGRAKLEASGGINESTLRVIAETGVDYISIGAMTKDVKA 269 (277)
T ss_pred HHHHcCCCEEEECCC----CHHHHHHHHHHh----CCCCcEEEECCCCHHHHHHHHHcCCCEEEEChhhcCCcc
Confidence 334567888877654 567777777643 346788888744899999999999999999999887753
No 130
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=60.59 E-value=1.1e+02 Score=29.39 Aligned_cols=81 Identities=9% Similarity=-0.032 Sum_probs=51.8
Q ss_pred HHHHHHhCCCc-eEEeCCCCCCCC-------HHHHHHHHHHhhcCCC-CCCC--eEecC-CC-ChHHHHHHHHcCCcEee
Q psy14115 45 CAHQMVEKDVN-GFAVGGLSGGEA-------KEDFWYSVLVSINCLP-KDKP--RYVMG-IG-FAVDLLICCALGADMFD 111 (319)
Q Consensus 45 s~~~l~~~~~~-G~aIgGl~~ge~-------~~e~~~ii~~~~~~LP-~dkP--r~l~G-vg-~P~~Il~~V~lGvD~FD 111 (319)
.++...+.+.+ -+.+....+-.+ +++..+++..+.+..+ ++.| .|..- .| ...+.+.++..|+|.||
T Consensus 154 ~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~laA~~aG~~~vd 233 (279)
T cd07947 154 LMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAAWLYGASWVN 233 (279)
T ss_pred HHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHHHHHhCCCEEE
Confidence 33333447888 677776544333 3678888888877643 1233 34432 24 35689999999999999
Q ss_pred cCCccccCcCCcce
Q psy14115 112 CVFPTRTARFGSAL 125 (319)
Q Consensus 112 ~~~Ptr~Ar~G~al 125 (319)
++.--.-.+.|.+=
T Consensus 234 ~sv~GlGe~aGN~~ 247 (279)
T cd07947 234 CTLLGIGERTGNCP 247 (279)
T ss_pred Eecccccccccchh
Confidence 99876665555443
No 131
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=60.10 E-value=64 Score=27.35 Aligned_cols=79 Identities=20% Similarity=0.051 Sum_probs=51.4
Q ss_pred eeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC-CCChHHHHHHHHcCC
Q psy14115 29 IFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG-IGFAVDLLICCALGA 107 (319)
Q Consensus 29 lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G-vg~P~~Il~~V~lGv 107 (319)
=|-+|--|.+.. -.+.++...+.+.+-+.|.++. +...+.+.++++.+.+.=+. .+..+.| .-.+++.....++|+
T Consensus 30 GfeVi~lg~~~s-~e~~v~aa~e~~adii~iSsl~-~~~~~~~~~~~~~L~~~g~~-~i~vivGG~~~~~~~~~l~~~Gv 106 (132)
T TIGR00640 30 GFDVDVGPLFQT-PEEIARQAVEADVHVVGVSSLA-GGHLTLVPALRKELDKLGRP-DILVVVGGVIPPQDFDELKEMGV 106 (132)
T ss_pred CcEEEECCCCCC-HHHHHHHHHHcCCCEEEEcCch-hhhHHHHHHHHHHHHhcCCC-CCEEEEeCCCChHhHHHHHHCCC
Confidence 455666565422 2356666677899999998875 34566677788777664343 3444444 334556889999999
Q ss_pred cEe
Q psy14115 108 DMF 110 (319)
Q Consensus 108 D~F 110 (319)
|-|
T Consensus 107 d~~ 109 (132)
T TIGR00640 107 AEI 109 (132)
T ss_pred CEE
Confidence 865
No 132
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=59.82 E-value=45 Score=34.27 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCceEEeCCCCCCC--CHH-------HHHHHHHHhhcCCC-CCCCeEec-CCCChHHHHHHHHcCCcEe
Q psy14115 44 DCAHQMVEKDVNGFAVGGLSGGE--AKE-------DFWYSVLVSINCLP-KDKPRYVM-GIGFAVDLLICCALGADMF 110 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl~~ge--~~~-------e~~~ii~~~~~~LP-~dkPr~l~-Gvg~P~~Il~~V~lGvD~F 110 (319)
+.++.+.+.+++++.+|+ ++|. ... --.+.+..+.+... .+.|...- |+-+|.||..|+++|+|.+
T Consensus 281 e~a~~l~~aGad~i~vg~-g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v 357 (486)
T PRK05567 281 EAARALIEAGADAVKVGI-GPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAV 357 (486)
T ss_pred HHHHHHHHcCCCEEEECC-CCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEE
Confidence 456677788999998875 2221 000 01223333333332 23554443 7899999999999999964
No 133
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=59.78 E-value=34 Score=32.50 Aligned_cols=68 Identities=25% Similarity=0.226 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCCceEEeCC----------------------CCCCCCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHH
Q psy14115 43 KDCAHQMVEKDVNGFAVGG----------------------LSGGEAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDL 99 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgG----------------------l~~ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~I 99 (319)
.+-++.+.+.+++|+.+-+ +++.....-..+.+..+.+.+ +.|.... |+-+|+++
T Consensus 172 ~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~--~ipvi~~GGI~~~~da 249 (301)
T PRK07259 172 VEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV--DIPIIGMGGISSAEDA 249 (301)
T ss_pred HHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC--CCCEEEECCCCCHHHH
Confidence 3455667778888887522 111100112355666666655 4777765 57899999
Q ss_pred HHHHHcCCcEeec
Q psy14115 100 LICCALGADMFDC 112 (319)
Q Consensus 100 l~~V~lGvD~FD~ 112 (319)
..+++.|+|++-.
T Consensus 250 ~~~l~aGAd~V~i 262 (301)
T PRK07259 250 IEFIMAGASAVQV 262 (301)
T ss_pred HHHHHcCCCceeE
Confidence 9999999886644
No 134
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=59.71 E-value=39 Score=34.88 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=52.2
Q ss_pred HHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC-CCChHHHHHHHHcCCcEee
Q psy14115 44 DCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG-IGFAVDLLICCALGADMFD 111 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G-vg~P~~Il~~V~lGvD~FD 111 (319)
+-++.|.+.+++-.+|.... | ..+.+.++|+.+.+..| +.|... | +.+++....++.+|+|.++
T Consensus 228 ~ra~~Lv~aGVd~i~~D~a~-g-~~~~~~~~i~~i~~~~~-~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 228 GKAKALLDAGVDVLVIDTAH-G-HQVKMISAIKAVRALDL-GVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred HHHHHHHHhCCCEEEEeCCC-C-CcHHHHHHHHHHHHHCC-CCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 45666777899999998765 3 34778888998888776 677766 7 8999999999999999999
No 135
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=59.50 E-value=1.1e+02 Score=28.26 Aligned_cols=44 Identities=18% Similarity=0.032 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEe-cCCCChHHHHHHHHcCCcEeec
Q psy14115 68 KEDFWYSVLVSINCLPKDKPRYV-MGIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 68 ~~e~~~ii~~~~~~LP~dkPr~l-~Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
.....+.+..+.+..| ++|..+ .|+-+|+++-.+++.|+|.|-.
T Consensus 169 ~~~~~~~i~~lr~~~~-~~~i~v~gGI~~~e~i~~~~~~gaD~vvv 213 (244)
T PRK13125 169 PVSVERNIKRVRNLVG-NKYLVVGFGLDSPEDARDALSAGADGVVV 213 (244)
T ss_pred hHHHHHHHHHHHHhcC-CCCEEEeCCcCCHHHHHHHHHcCCCEEEE
Confidence 3445566666666665 567665 6788999999999999998743
No 136
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=59.03 E-value=78 Score=31.05 Aligned_cols=78 Identities=14% Similarity=0.139 Sum_probs=51.1
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCC----CHHHHHHHHHHhhcCCCCCCCeEecC-CCChHHHHHHHHcCC
Q psy14115 33 VQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGE----AKEDFWYSVLVSINCLPKDKPRYVMG-IGFAVDLLICCALGA 107 (319)
Q Consensus 33 VqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge----~~~e~~~ii~~~~~~LP~dkPr~l~G-vg~P~~Il~~V~lGv 107 (319)
+.||...+.-.+-++.|.+.+++-+.+++-.... ......+.+..+.+.+..+.|....| +-+|+++-.+++.|+
T Consensus 228 ~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~ga 307 (353)
T cd04735 228 EEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGA 307 (353)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCC
Confidence 4677777766777888888899888886532111 01112333333444444467888774 679999999999998
Q ss_pred cEe
Q psy14115 108 DMF 110 (319)
Q Consensus 108 D~F 110 (319)
|++
T Consensus 308 D~V 310 (353)
T cd04735 308 DLV 310 (353)
T ss_pred ChH
Confidence 875
No 137
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.64 E-value=49 Score=32.05 Aligned_cols=67 Identities=7% Similarity=-0.143 Sum_probs=49.1
Q ss_pred HHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCc
Q psy14115 49 MVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTAR 120 (319)
Q Consensus 49 l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar 120 (319)
..+.+++...+..+ +++++.+.+...... .++...-+.|==+|.+|..-...|||.+.+.++|..|.
T Consensus 215 al~~gaDiI~LDnm----~~e~vk~av~~~~~~-~~~v~ieaSGGI~~~ni~~yA~tGvD~Is~galt~sa~ 281 (289)
T PRK07896 215 VLAEGAELVLLDNF----PVWQTQEAVQRRDAR-APTVLLESSGGLTLDTAAAYAETGVDYLAVGALTHSVP 281 (289)
T ss_pred HHHcCCCEEEeCCC----CHHHHHHHHHHHhcc-CCCEEEEEECCCCHHHHHHHHhcCCCEEEeChhhcCCC
Confidence 34568888888875 478888888754333 33333444565589999999999999999999988664
No 138
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=58.25 E-value=97 Score=30.10 Aligned_cols=86 Identities=16% Similarity=0.117 Sum_probs=59.7
Q ss_pred ceeeeccCCCCHHHHHHHHHHHHhCCCceEEeC-CC------------CCCCCHHHHHHHHHHhhcCCCCCCCeEe-cCC
Q psy14115 28 NIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVG-GL------------SGGEAKEDFWYSVLVSINCLPKDKPRYV-MGI 93 (319)
Q Consensus 28 ~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIg-Gl------------~~ge~~~e~~~ii~~~~~~LP~dkPr~l-~Gv 93 (319)
..+++..+|.+++.-.++++.+.+.+++++=|- |- ....+++...++++.+.+.+|.+.|.-+ +.+
T Consensus 63 ~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~ 142 (312)
T PRK10550 63 TLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRL 142 (312)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEEC
Confidence 345566678999988889988888888777653 11 1124567788899999998888888766 333
Q ss_pred C--Ch---HHHHH-HHHcCCcEeecC
Q psy14115 94 G--FA---VDLLI-CCALGADMFDCV 113 (319)
Q Consensus 94 g--~P---~~Il~-~V~lGvD~FD~~ 113 (319)
| .+ .++.. +.+.|+|.+...
T Consensus 143 g~~~~~~~~~~a~~l~~~Gvd~i~Vh 168 (312)
T PRK10550 143 GWDSGERKFEIADAVQQAGATELVVH 168 (312)
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEC
Confidence 3 22 24443 447999999765
No 139
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=58.23 E-value=43 Score=32.92 Aligned_cols=76 Identities=17% Similarity=0.099 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeC------CCCC--CCCHHHHHHHHHHhhcCCCCCCCe--EecCCCChHHHHHHHHcC
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVG------GLSG--GEAKEDFWYSVLVSINCLPKDKPR--YVMGIGFAVDLLICCALG 106 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIg------Gl~~--ge~~~e~~~ii~~~~~~LP~dkPr--~l~Gvg~P~~Il~~V~lG 106 (319)
+..+...+-++.|.+.+++-+-+| |.+. |.+...=++.++.+.+..|..+.. .++|.+++.++-.+...|
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~g 101 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAG 101 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcC
Confidence 667888889999999999888776 1111 222211234555555555543322 224889999999999999
Q ss_pred CcEeec
Q psy14115 107 ADMFDC 112 (319)
Q Consensus 107 vD~FD~ 112 (319)
+|.+-.
T Consensus 102 vd~iri 107 (337)
T PRK08195 102 VRVVRV 107 (337)
T ss_pred CCEEEE
Confidence 998643
No 140
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=58.12 E-value=1.4e+02 Score=29.57 Aligned_cols=72 Identities=29% Similarity=0.355 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCCceEEeCCCCCCCCH------H-----------H----HHHHHHHhhcCCCCCCCeEec-CCCChHHHH
Q psy14115 43 KDCAHQMVEKDVNGFAVGGLSGGEAK------E-----------D----FWYSVLVSINCLPKDKPRYVM-GIGFAVDLL 100 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgGl~~ge~~------~-----------e----~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il 100 (319)
.+-++.+.+.+++++.++|.+ |-+. . + ....|..+.+.+ .+.|.... |+-++.|+.
T Consensus 200 ~~~a~~l~~~Gvd~I~Vsg~G-Gt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~-~~ipvia~GGI~~~~dv~ 277 (352)
T PRK05437 200 KETAKRLADAGVKAIDVAGAG-GTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLL-PDLPIIASGGIRNGLDIA 277 (352)
T ss_pred HHHHHHHHHcCCCEEEECCCC-CCCccchhhhhhhccccccccccccCCHHHHHHHHHHhc-CCCeEEEECCCCCHHHHH
Confidence 356677888899999998853 3110 0 0 112333333333 24677766 689999999
Q ss_pred HHHHcCCcEeecCCcc
Q psy14115 101 ICCALGADMFDCVFPT 116 (319)
Q Consensus 101 ~~V~lGvD~FD~~~Pt 116 (319)
.++++|+|.+-..-|.
T Consensus 278 k~l~~GAd~v~ig~~~ 293 (352)
T PRK05437 278 KALALGADAVGMAGPF 293 (352)
T ss_pred HHHHcCCCEEEEhHHH
Confidence 9999999987655443
No 141
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=58.05 E-value=45 Score=34.00 Aligned_cols=67 Identities=16% Similarity=0.077 Sum_probs=52.0
Q ss_pred HHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecC
Q psy14115 44 DCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
+-++.|.+.+++.++|.-.. | +.....+.|+.+.+..| +.|..+=++.++++...++.+|+|.++..
T Consensus 227 ~r~~~L~~aG~d~I~vd~a~-g-~~~~~~~~i~~i~~~~~-~~~vi~G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 227 ERAEALVKAGVDVIVIDSSH-G-HSIYVIDSIKEIKKTYP-DLDIIAGNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHHHHHHhCCCEEEEECCC-C-cHhHHHHHHHHHHHhCC-CCCEEEEeCCCHHHHHHHHHhCCCEEEEC
Confidence 34556778899999987643 3 34567888888888876 56666656899999999999999999754
No 142
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=57.82 E-value=1e+02 Score=29.97 Aligned_cols=82 Identities=12% Similarity=0.045 Sum_probs=50.5
Q ss_pred eeeeccCCCCHHH--HHHHHHHHHhCCCceEEeCCCCC--CCCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHH
Q psy14115 29 IFPIVQGGLDEAL--RKDCAHQMVEKDVNGFAVGGLSG--GEAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICC 103 (319)
Q Consensus 29 lfgiVqGG~~~dl--R~~s~~~l~~~~~~G~aIgGl~~--ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V 103 (319)
+..-+-.|.+++. -.+-++.+.+.+++.+.+.|-.. .-+...-|+.+..+.+.+ +.|.... |+.+|+++..++
T Consensus 136 v~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~--~iPVI~nGgI~s~~da~~~l 213 (321)
T PRK10415 136 VTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV--SIPVIANGDITDPLKARAVL 213 (321)
T ss_pred eEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHH
Confidence 3333434555432 23456667778999998876431 111112256666666654 3677776 478999999999
Q ss_pred H-cCCcEeec
Q psy14115 104 A-LGADMFDC 112 (319)
Q Consensus 104 ~-lGvD~FD~ 112 (319)
+ .|+|.+=.
T Consensus 214 ~~~gadgVmi 223 (321)
T PRK10415 214 DYTGADALMI 223 (321)
T ss_pred hccCCCEEEE
Confidence 7 69986643
No 143
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=57.50 E-value=64 Score=29.70 Aligned_cols=79 Identities=14% Similarity=0.093 Sum_probs=59.5
Q ss_pred CceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCC---ChHHHHHHH
Q psy14115 27 QNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIG---FAVDLLICC 103 (319)
Q Consensus 27 q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg---~P~~Il~~V 103 (319)
..+++|+-| .+.+.=...++.+.+-+++-+-|+ +. ..+-.+.|....+..| ..+.|+| ++++.-.++
T Consensus 15 ~~~iaV~r~-~~~~~a~~i~~al~~~Gi~~iEit-l~----~~~~~~~I~~l~~~~p----~~~IGAGTVl~~~~a~~a~ 84 (212)
T PRK05718 15 GPVVPVIVI-NKLEDAVPLAKALVAGGLPVLEVT-LR----TPAALEAIRLIAKEVP----EALIGAGTVLNPEQLAQAI 84 (212)
T ss_pred CCEEEEEEc-CCHHHHHHHHHHHHHcCCCEEEEe-cC----CccHHHHHHHHHHHCC----CCEEEEeeccCHHHHHHHH
Confidence 569999996 888888888999999999999888 32 2344556666666555 3556766 588899999
Q ss_pred HcCCcEeecCCc
Q psy14115 104 ALGADMFDCVFP 115 (319)
Q Consensus 104 ~lGvD~FD~~~P 115 (319)
..|.|.+-++.-
T Consensus 85 ~aGA~FivsP~~ 96 (212)
T PRK05718 85 EAGAQFIVSPGL 96 (212)
T ss_pred HcCCCEEECCCC
Confidence 999999877643
No 144
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=57.29 E-value=24 Score=30.20 Aligned_cols=53 Identities=13% Similarity=0.259 Sum_probs=38.5
Q ss_pred CCCCCCCCcccCcCCHHHHhhhhcCChhHhhHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhCC
Q psy14115 144 PIDNQCPCSTCARYTRAYLHHIATVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMKDAYP 213 (319)
Q Consensus 144 Pi~~~C~C~tC~~~tRAYLhHLl~~E~la~~LLtiHNl~~~~~l~~~iR~aI~~g~f~~~v~~f~~~~~~ 213 (319)
-|...=-|+.|+|-|=+-=+. ..=..+-.+||+.|.+|.=++-+.+|+...|+
T Consensus 36 ~L~~~LRC~vCqnqsiadSna-----------------~iA~dmR~~Vr~~i~~G~sd~eI~~~~v~RYG 88 (126)
T PRK10144 36 NIASQLRCPQCQNQNLLESNA-----------------PVAVSMRHQVYSMVAEGKSEVEIIGWMTERYG 88 (126)
T ss_pred HHHHcCCCCCCCCCChhhcCC-----------------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 344456799999876542222 33345567899999999999999999988776
No 145
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=57.28 E-value=49 Score=32.94 Aligned_cols=90 Identities=14% Similarity=0.026 Sum_probs=64.7
Q ss_pred Cceeeec--cCCCCHHHHHHHHHHHHhCCCceEEeCCCC---CCCCHHHHHHHHHHhhcCCC---CCCCeEecCC-CChH
Q psy14115 27 QNIFPIV--QGGLDEALRKDCAHQMVEKDVNGFAVGGLS---GGEAKEDFWYSVLVSINCLP---KDKPRYVMGI-GFAV 97 (319)
Q Consensus 27 q~lfgiV--qGG~~~dlR~~s~~~l~~~~~~G~aIgGl~---~ge~~~e~~~ii~~~~~~LP---~dkPr~l~Gv-g~P~ 97 (319)
..+..|+ ++|++++.-.+.++++.+-++++....|.. .-.+.+|+.+++..+.+... ..++.|+.++ +...
T Consensus 131 Pli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~ 210 (367)
T cd08205 131 PLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPD 210 (367)
T ss_pred CeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHH
Confidence 3444444 468999999999999999999999766642 23457788888888777766 4678888887 6667
Q ss_pred HHH----HHHHcCCcEeecCCcc
Q psy14115 98 DLL----ICCALGADMFDCVFPT 116 (319)
Q Consensus 98 ~Il----~~V~lGvD~FD~~~Pt 116 (319)
+++ .+.++|+|.+=...|+
T Consensus 211 e~i~~a~~a~~~Gad~vmv~~~~ 233 (367)
T cd08205 211 ELRRRADRAVEAGANALLINPNL 233 (367)
T ss_pred HHHHHHHHHHHcCCCEEEEeccc
Confidence 765 4678999965444443
No 146
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=57.05 E-value=1.3e+02 Score=29.16 Aligned_cols=98 Identities=15% Similarity=0.088 Sum_probs=57.4
Q ss_pred HHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCC-CceEEe--------CCCCCCCCHHHHHHHHHHhhcCC
Q psy14115 12 RWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKD-VNGFAV--------GGLSGGEAKEDFWYSVLVSINCL 82 (319)
Q Consensus 12 rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~-~~G~aI--------gGl~~ge~~~e~~~ii~~~~~~L 82 (319)
.|+++..+..+...+..+++.|.| ...+.-.+.++.+.+.+ .+++-+ ++...|.+++.+.+++..+.+..
T Consensus 78 ~~~~~i~~~~~~~~~~pvI~Si~G-~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~ 156 (310)
T PRK02506 78 YYLDYVLELQKKGPNKPHFLSVVG-LSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYF 156 (310)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEEe-CcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhc
Confidence 566654332222223567888876 66666678888876655 566654 23234566788888999888765
Q ss_pred CCCCCeEe-cCC-CChHHHHHHH----HcCCcEeec
Q psy14115 83 PKDKPRYV-MGI-GFAVDLLICC----ALGADMFDC 112 (319)
Q Consensus 83 P~dkPr~l-~Gv-g~P~~Il~~V----~lGvD~FD~ 112 (319)
. +|.++ +.. -+..++..+. +.|+|.+..
T Consensus 157 ~--~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~ 190 (310)
T PRK02506 157 T--KPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNC 190 (310)
T ss_pred C--CccEEecCCCCCHHHHHHHHHHhCcCceEEEEE
Confidence 3 67664 222 1445554333 456665443
No 147
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=56.73 E-value=1.3e+02 Score=31.74 Aligned_cols=89 Identities=11% Similarity=-0.007 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhCCCc------eEEeCCCCCCCCHHHHHHHHHHhhcCCCCCC--C--eEecC-CCC-hHHHHHHHH
Q psy14115 37 LDEALRKDCAHQMVEKDVN------GFAVGGLSGGEAKEDFWYSVLVSINCLPKDK--P--RYVMG-IGF-AVDLLICCA 104 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~------G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dk--P--r~l~G-vg~-P~~Il~~V~ 104 (319)
.+++--.+.++.+.+.+.+ -+.+....+-..+.++.+++..+.+.+|... | .|..- .|. -.+.+.++.
T Consensus 181 ~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANslaAv~ 260 (564)
T TIGR00970 181 TELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAELGFL 260 (564)
T ss_pred CCHHHHHHHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHHHHH
Confidence 4677777888888887654 4667776666789999999999988887532 2 23331 243 337889999
Q ss_pred cCCcEeecCCccccCcCCcce
Q psy14115 105 LGADMFDCVFPTRTARFGSAL 125 (319)
Q Consensus 105 lGvD~FD~~~Ptr~Ar~G~al 125 (319)
.|+|.||+..--.-+|.|.+=
T Consensus 261 aGa~~v~gt~~G~GERaGNa~ 281 (564)
T TIGR00970 261 AGADRIEGCLFGNGERTGNVD 281 (564)
T ss_pred hCCCEEEeecCcCCccccCcc
Confidence 999999988666656566543
No 148
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=56.19 E-value=52 Score=31.26 Aligned_cols=63 Identities=14% Similarity=0.024 Sum_probs=47.4
Q ss_pred hCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccC
Q psy14115 51 EKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTA 119 (319)
Q Consensus 51 ~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~A 119 (319)
+.+++.+.++.+. ++++.++++.+... ++.|..+.|==+|.++....+.|+|.+-...++..+
T Consensus 199 ~~gaD~I~ld~~~----~e~l~~~v~~i~~~--~~i~i~asGGIt~~ni~~~a~~Gad~Isvgal~~s~ 261 (269)
T cd01568 199 EAGADIIMLDNMS----PEELKEAVKLLKGL--PRVLLEASGGITLENIRAYAETGVDVISTGALTHSA 261 (269)
T ss_pred HcCCCEEEECCCC----HHHHHHHHHHhccC--CCeEEEEECCCCHHHHHHHHHcCCCEEEEcHHHcCC
Confidence 4578888888863 46677777665443 356777777668999999999999999877666655
No 149
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=55.59 E-value=43 Score=33.54 Aligned_cols=75 Identities=17% Similarity=0.157 Sum_probs=50.5
Q ss_pred HHHHHHHHhCCCceEEeCCCCCCCCH---HHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEeecCCcccc
Q psy14115 43 KDCAHQMVEKDVNGFAVGGLSGGEAK---EDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFDCVFPTRT 118 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgGl~~ge~~---~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~~~Ptr~ 118 (319)
.+-++.+.+.+++|+.+++-+ |... ..-++.|..+.+.+..+.|.++- |+-++.||+.++++|+|.+=..-|...
T Consensus 239 ~eda~~a~~~Gvd~I~VS~HG-Grq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~ 317 (367)
T TIGR02708 239 PEDADRALKAGASGIWVTNHG-GRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIY 317 (367)
T ss_pred HHHHHHHHHcCcCEEEECCcC-ccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence 345566677899999888754 2211 11244555555556556788875 789999999999999998755544433
No 150
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=55.12 E-value=58 Score=32.68 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=38.3
Q ss_pred HHhCCCceEEeCCCCCCC--CH----HH--------HHHHHHHhhcCCCCCCCeEec--CCCChHHHHHHHHcCCcEeec
Q psy14115 49 MVEKDVNGFAVGGLSGGE--AK----ED--------FWYSVLVSINCLPKDKPRYVM--GIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 49 l~~~~~~G~aIgGl~~ge--~~----~e--------~~~ii~~~~~~LP~dkPr~l~--Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
..+.++|.+.|.|..+|- ++ +. +.++.+...+.==.++..++. |+.+|.|++.++++|.|.|-.
T Consensus 223 ~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~i 302 (368)
T PF01645_consen 223 AAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYI 302 (368)
T ss_dssp HHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-
T ss_pred hhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEe
Confidence 667899999999986652 11 11 233334333332356666654 679999999999999998865
Q ss_pred CCcc
Q psy14115 113 VFPT 116 (319)
Q Consensus 113 ~~Pt 116 (319)
.-+.
T Consensus 303 gt~~ 306 (368)
T PF01645_consen 303 GTAA 306 (368)
T ss_dssp SHHH
T ss_pred cchh
Confidence 4433
No 151
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=55.07 E-value=56 Score=32.07 Aligned_cols=78 Identities=21% Similarity=0.189 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeC---CC---C--CCCCHHHHHHHHHHhhcCCCCCCCe-E-ecCCCChHHHHHHHHcC
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVG---GL---S--GGEAKEDFWYSVLVSINCLPKDKPR-Y-VMGIGFAVDLLICCALG 106 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIg---Gl---~--~ge~~~e~~~ii~~~~~~LP~dkPr-~-l~Gvg~P~~Il~~V~lG 106 (319)
+..+...+-++.|.+.+++-.=+| |+ + .|.+...=++.+..+.+.++..+.. + ++|.++..++-.+...|
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~g 100 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAG 100 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCC
Confidence 667788888999999999988885 11 1 1222111223444444555544433 2 25889999999999999
Q ss_pred CcEeecCC
Q psy14115 107 ADMFDCVF 114 (319)
Q Consensus 107 vD~FD~~~ 114 (319)
+|.+-...
T Consensus 101 vd~iri~~ 108 (333)
T TIGR03217 101 ARTVRVAT 108 (333)
T ss_pred CCEEEEEe
Confidence 99876443
No 152
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=54.95 E-value=54 Score=33.75 Aligned_cols=67 Identities=21% Similarity=0.152 Sum_probs=53.2
Q ss_pred HHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeec
Q psy14115 43 KDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
.+.++.|.+.+++.+++.... |. ...+.+.++.+....| +.|..+=++.++++...++.+|+|.++.
T Consensus 230 ~e~a~~L~~agvdvivvD~a~-g~-~~~vl~~i~~i~~~~p-~~~vi~g~v~t~e~a~~l~~aGad~i~v 296 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAH-GH-SEGVLDRVREIKAKYP-DVQIIAGNVATAEAARALIEAGADAVKV 296 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCC-Cc-chhHHHHHHHHHhhCC-CCCEEEeccCCHHHHHHHHHcCCCEEEE
Confidence 567788888899988887542 22 3567788888888775 5677776789999999999999999985
No 153
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=54.95 E-value=79 Score=28.31 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCCceEEeCCCCCC--CCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHc-CCcEeec
Q psy14115 41 LRKDCAHQMVEKDVNGFAVGGLSGG--EAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCAL-GADMFDC 112 (319)
Q Consensus 41 lR~~s~~~l~~~~~~G~aIgGl~~g--e~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~l-GvD~FD~ 112 (319)
.-.+-++.+.+.+++.+.+.+-... ......++.+..+.+.. +.|...- |+.+|+++..+++. |+|++=.
T Consensus 139 ~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi~~Ggi~~~~d~~~~l~~~gad~V~i 212 (231)
T cd02801 139 ETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDALRCLEQTGVDGVMI 212 (231)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--CCeEEEeCCCCCHHHHHHHHHhcCCCEEEE
Confidence 3445567777789999887664311 11112345555555543 4778776 47899999999998 8997644
No 154
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=54.92 E-value=1.8e+02 Score=27.68 Aligned_cols=77 Identities=21% Similarity=0.112 Sum_probs=52.5
Q ss_pred cCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCC----------HHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHH
Q psy14115 34 QGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEA----------KEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLIC 102 (319)
Q Consensus 34 qGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~----------~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~ 102 (319)
.+|.+.+.-.+-++.+.+.+++.+.+.+-..... .....+.+..+.+.+ +.|...- |+.+|.++..+
T Consensus 222 ~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~Ggi~t~~~a~~~ 299 (327)
T cd02803 222 PGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV--KIPVIAVGGIRDPEVAEEI 299 (327)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHH
Confidence 3566777777788888889999888766432211 122345555555555 4787765 46789999999
Q ss_pred HHc-CCcEeec
Q psy14115 103 CAL-GADMFDC 112 (319)
Q Consensus 103 V~l-GvD~FD~ 112 (319)
++. |+|++=.
T Consensus 300 l~~g~aD~V~i 310 (327)
T cd02803 300 LAEGKADLVAL 310 (327)
T ss_pred HHCCCCCeeee
Confidence 998 7998643
No 155
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=54.71 E-value=2.1e+02 Score=27.79 Aligned_cols=97 Identities=15% Similarity=0.167 Sum_probs=59.9
Q ss_pred HHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCC----CC----CCHHHHHHHHHHhhcCCC
Q psy14115 12 RWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLS----GG----EAKEDFWYSVLVSINCLP 83 (319)
Q Consensus 12 rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~----~g----e~~~e~~~ii~~~~~~LP 83 (319)
.|+++..+..+.. +..+++-|-| .+++.-.+.++.+.+.+++++-|---+ .+ ...+.+.+++..+.+.+
T Consensus 86 ~~~~~i~~~~~~~-~~pvi~si~g-~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~- 162 (325)
T cd04739 86 EYLELIRRAKRAV-SIPVIASLNG-VSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV- 162 (325)
T ss_pred HHHHHHHHHHhcc-CCeEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-
Confidence 4565554432222 3568888866 566656678888877788888754321 11 11244578888888776
Q ss_pred CCCCeEe-cC--CCChHHHHH-HHHcCCcEeec
Q psy14115 84 KDKPRYV-MG--IGFAVDLLI-CCALGADMFDC 112 (319)
Q Consensus 84 ~dkPr~l-~G--vg~P~~Il~-~V~lGvD~FD~ 112 (319)
+.|..+ ++ +....++.. +.+.|+|-+..
T Consensus 163 -~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~ 194 (325)
T cd04739 163 -TIPVAVKLSPFFSALAHMAKQLDAAGADGLVL 194 (325)
T ss_pred -CCCEEEEcCCCccCHHHHHHHHHHcCCCeEEE
Confidence 478776 33 345556654 56789998864
No 156
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=54.70 E-value=56 Score=28.96 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=40.3
Q ss_pred HHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCcc
Q psy14115 45 CAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPT 116 (319)
Q Consensus 45 s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Pt 116 (319)
.++...+.+.++...++.. .++++.+.. . .+.++.|+.+|.++..+...|+|.+=. ||.
T Consensus 68 ~~~~a~~~Ga~~i~~p~~~--------~~~~~~~~~-~---~~~~i~gv~t~~e~~~A~~~Gad~i~~-~p~ 126 (190)
T cd00452 68 QADAAIAAGAQFIVSPGLD--------PEVVKAANR-A---GIPLLPGVATPTEIMQALELGADIVKL-FPA 126 (190)
T ss_pred HHHHHHHcCCCEEEcCCCC--------HHHHHHHHH-c---CCcEECCcCCHHHHHHHHHCCCCEEEE-cCC
Confidence 4455666788888766532 234444333 2 235677999999999999999998765 563
No 157
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=54.49 E-value=58 Score=30.88 Aligned_cols=67 Identities=19% Similarity=0.140 Sum_probs=42.5
Q ss_pred HHHHHHHHhCCCceEEeCCCC------------------CCCCHHH----HHHHHHHhhcCCCCCCCeEec-CCCChHHH
Q psy14115 43 KDCAHQMVEKDVNGFAVGGLS------------------GGEAKED----FWYSVLVSINCLPKDKPRYVM-GIGFAVDL 99 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgGl~------------------~ge~~~e----~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~I 99 (319)
.+-++.+.+.+++++.+.+-. +|.+... -.+.+..+.+.++ .|.... |+-+|+++
T Consensus 172 ~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~--ipvi~~GGI~s~~da 249 (300)
T TIGR01037 172 TEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVD--IPIIGVGGITSFEDA 249 (300)
T ss_pred HHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCC--CCEEEECCCCCHHHH
Confidence 344556677889999874211 0111111 1355566666554 677765 57899999
Q ss_pred HHHHHcCCcEee
Q psy14115 100 LICCALGADMFD 111 (319)
Q Consensus 100 l~~V~lGvD~FD 111 (319)
..+++.|+|.+-
T Consensus 250 ~~~l~~GAd~V~ 261 (300)
T TIGR01037 250 LEFLMAGASAVQ 261 (300)
T ss_pred HHHHHcCCCcee
Confidence 999999998654
No 158
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=53.89 E-value=20 Score=35.86 Aligned_cols=40 Identities=18% Similarity=-0.032 Sum_probs=32.1
Q ss_pred HHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecC
Q psy14115 72 WYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 72 ~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
|+.|+.+.+..+ .|..+=|+++|++...+++.|+|.+|.+
T Consensus 217 w~~i~~l~~~~~--~PvivKGv~~~eda~~a~~~Gvd~I~VS 256 (367)
T TIGR02708 217 PRDIEEIAGYSG--LPVYVKGPQCPEDADRALKAGASGIWVT 256 (367)
T ss_pred HHHHHHHHHhcC--CCEEEeCCCCHHHHHHHHHcCcCEEEEC
Confidence 455666666554 7899999999999999999999987543
No 159
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=53.81 E-value=46 Score=31.54 Aligned_cols=44 Identities=20% Similarity=0.061 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEeecC
Q psy14115 70 DFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 70 e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
.-.+.|..+...++++.|..-. ||.+++|++..+.+|.|.+-..
T Consensus 229 ~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~ 273 (295)
T PF01180_consen 229 IALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVC 273 (295)
T ss_dssp HHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEES
T ss_pred HHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheec
Confidence 3467777888888888888765 6899999999999999988653
No 160
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=53.62 E-value=54 Score=29.79 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=48.0
Q ss_pred HHHHHHHHhCCCceEEeCCCCC-CCCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHH-HHHcCCcEeec
Q psy14115 43 KDCAHQMVEKDVNGFAVGGLSG-GEAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLI-CCALGADMFDC 112 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgGl~~-ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~-~V~lGvD~FD~ 112 (319)
.+.++.+.+.+++.+.+.+.+. |..+.-.++.++.+.+.. +.|.+.- |+.++.++.. +-..|+|.+-.
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 3566777788999999998643 211222366666666655 4788887 4899999999 66799997643
No 161
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=53.30 E-value=48 Score=31.23 Aligned_cols=60 Identities=17% Similarity=0.028 Sum_probs=38.2
Q ss_pred hCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEe-cCCCChHHHHHHHHcCCcEee
Q psy14115 51 EKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYV-MGIGFAVDLLICCALGADMFD 111 (319)
Q Consensus 51 ~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l-~Gvg~P~~Il~~V~lGvD~FD 111 (319)
+.+++-+.+.+-...-..-+ .+.+....+.+|.+.|... -|+-+|+++-.+..+|+|.|=
T Consensus 178 ~~gadiIgin~rdl~~~~~d-~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vl 238 (260)
T PRK00278 178 KLGAPLIGINNRNLKTFEVD-LETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVL 238 (260)
T ss_pred HcCCCEEEECCCCcccccCC-HHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEE
Confidence 45677666665322111111 2233444556776667775 478899999999999999873
No 162
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.62 E-value=68 Score=30.95 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=48.1
Q ss_pred HHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCc
Q psy14115 49 MVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTAR 120 (319)
Q Consensus 49 l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar 120 (319)
..+.+++...+..+ +++++.+.+... +...|.-+.|==++.+|....+.|||.+....+|..|+
T Consensus 210 a~~~gaDiI~LDn~----s~e~l~~av~~~----~~~~~leaSGGI~~~ni~~yA~tGVD~Is~Galthsa~ 273 (281)
T PRK06106 210 ALELGVDAVLLDNM----TPDTLREAVAIV----AGRAITEASGRITPETAPAIAASGVDLISVGWLTHSAP 273 (281)
T ss_pred HHHcCCCEEEeCCC----CHHHHHHHHHHh----CCCceEEEECCCCHHHHHHHHhcCCCEEEeChhhcCCC
Confidence 34567888888775 567777777653 34455556675689999999999999999999988664
No 163
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=52.14 E-value=67 Score=31.75 Aligned_cols=75 Identities=20% Similarity=0.135 Sum_probs=46.5
Q ss_pred HHHHHHHHhCCCceEEeCCCCCCCC--HHHHHHHHHHhhc---CCCCCCCeEec-CCCChHHHHHHHHcCCcEeecCCcc
Q psy14115 43 KDCAHQMVEKDVNGFAVGGLSGGEA--KEDFWYSVLVSIN---CLPKDKPRYVM-GIGFAVDLLICCALGADMFDCVFPT 116 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgGl~~ge~--~~e~~~ii~~~~~---~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~~~Pt 116 (319)
.+-++.+.+.+++++.+.|-.+..- ...-...+..+.+ .+..+.|.+.. |+-+..||+.++++|.|.+=.--|.
T Consensus 224 ~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~ 303 (344)
T cd02922 224 VEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPF 303 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 3456667778999999887532210 0011122333333 23345677765 7899999999999999987554444
Q ss_pred c
Q psy14115 117 R 117 (319)
Q Consensus 117 r 117 (319)
.
T Consensus 304 l 304 (344)
T cd02922 304 L 304 (344)
T ss_pred H
Confidence 3
No 164
>PRK08508 biotin synthase; Provisional
Probab=52.09 E-value=1e+02 Score=29.19 Aligned_cols=76 Identities=13% Similarity=-0.028 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHhCCCceEEe--CCCCCCC-CHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeec
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAV--GGLSGGE-AKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aI--gGl~~ge-~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
..+|.-.+.+++..+.++..|.+ +|....+ ..+-+.+++..+.+..|.-.+--..|.-+++.+..+-+.|+|.+-.
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~ 118 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNH 118 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcc
Confidence 35566666677777789999886 4443222 2344567777777666633322356888999999999999997654
No 165
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=51.99 E-value=71 Score=31.43 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=51.3
Q ss_pred eeeccCCCCHHHHHHHHHHHHhCC--CceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC-CCChHHHHHHHHcC
Q psy14115 30 FPIVQGGLDEALRKDCAHQMVEKD--VNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG-IGFAVDLLICCALG 106 (319)
Q Consensus 30 fgiVqGG~~~dlR~~s~~~l~~~~--~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G-vg~P~~Il~~V~lG 106 (319)
++.+-=|..++-. +-++.|.+.+ .+-..+.- +.| ......+.|+.+.+.+| .|-.+-| ++++++...++..|
T Consensus 84 ~v~~SvG~t~e~~-~r~~~lv~a~~~~d~i~~D~-ahg-~s~~~~~~i~~i~~~~p--~~~vi~GnV~t~e~a~~l~~aG 158 (321)
T TIGR01306 84 FASISVGVKACEY-EFVTQLAEEALTPEYITIDI-AHG-HSNSVINMIKHIKTHLP--DSFVIAGNVGTPEAVRELENAG 158 (321)
T ss_pred EEEEEcCCCHHHH-HHHHHHHhcCCCCCEEEEeC-ccC-chHHHHHHHHHHHHhCC--CCEEEEecCCCHHHHHHHHHcC
Confidence 3333334554432 3345555655 34444443 333 34567788888888886 5666667 99999999999999
Q ss_pred CcEeecC
Q psy14115 107 ADMFDCV 113 (319)
Q Consensus 107 vD~FD~~ 113 (319)
+|.++..
T Consensus 159 ad~I~V~ 165 (321)
T TIGR01306 159 ADATKVG 165 (321)
T ss_pred cCEEEEC
Confidence 9999844
No 166
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=51.59 E-value=1.2e+02 Score=29.20 Aligned_cols=84 Identities=17% Similarity=0.079 Sum_probs=56.2
Q ss_pred ceeeeccCCCCHHHHHHHHHHHHhCCCceEEeC-CCC------------CCCCHHHHHHHHHHhhcCCCCCCCeEe---c
Q psy14115 28 NIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVG-GLS------------GGEAKEDFWYSVLVSINCLPKDKPRYV---M 91 (319)
Q Consensus 28 ~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIg-Gl~------------~ge~~~e~~~ii~~~~~~LP~dkPr~l---~ 91 (319)
..+.+..+|.+++.-.++++.+.+.+++|+-|- |-. ...+++...++++.+.+.++ .|..+ .
T Consensus 63 ~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~--~pv~vKir~ 140 (319)
T TIGR00737 63 TPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD--IPVTVKIRI 140 (319)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC--CCEEEEEEc
Confidence 345566677999988899998888899998763 211 12345667788888887764 66544 2
Q ss_pred CCC----ChHHHH-HHHHcCCcEeecC
Q psy14115 92 GIG----FAVDLL-ICCALGADMFDCV 113 (319)
Q Consensus 92 Gvg----~P~~Il-~~V~lGvD~FD~~ 113 (319)
|.. ++.+++ .+.+.|+|.+...
T Consensus 141 g~~~~~~~~~~~a~~l~~~G~d~i~vh 167 (319)
T TIGR00737 141 GWDDAHINAVEAARIAEDAGAQAVTLH 167 (319)
T ss_pred ccCCCcchHHHHHHHHHHhCCCEEEEE
Confidence 321 244554 4567899999764
No 167
>PRK08185 hypothetical protein; Provisional
Probab=51.43 E-value=40 Score=32.54 Aligned_cols=62 Identities=16% Similarity=0.091 Sum_probs=39.1
Q ss_pred HHHHHHhCCCceEEe-----CCCCCC-CCHHHHHHHHHHhhcCCCCCCCeEecC-CCChHH-HHHHHHcCCc
Q psy14115 45 CAHQMVEKDVNGFAV-----GGLSGG-EAKEDFWYSVLVSINCLPKDKPRYVMG-IGFAVD-LLICCALGAD 108 (319)
Q Consensus 45 s~~~l~~~~~~G~aI-----gGl~~g-e~~~e~~~ii~~~~~~LP~dkPr~l~G-vg~P~~-Il~~V~lGvD 108 (319)
+.+...+.+++-+|+ +|.-.. ..+.--.+.++.+.+.+ +.|..+.| .|.|.+ +..+|.+||-
T Consensus 154 a~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~ 223 (283)
T PRK08185 154 AEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVG 223 (283)
T ss_pred HHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCe
Confidence 344444458888887 666322 12222255666666655 48999986 477766 6679999983
No 168
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=51.39 E-value=31 Score=31.67 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=42.0
Q ss_pred HHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcE
Q psy14115 45 CAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADM 109 (319)
Q Consensus 45 s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~ 109 (319)
-++.+.+.+.+++.|||- .|-+.+.+.++++.+.+.. ++|.+++ .|++.. |.-|+|-
T Consensus 16 ia~~v~~~gtDaI~VGGS-~gvt~~~~~~~v~~ik~~~--~lPvilf-p~~~~~----i~~~aD~ 72 (205)
T TIGR01769 16 IAKNAKDAGTDAIMVGGS-LGIVESNLDQTVKKIKKIT--NLPVILF-PGNVNG----LSRYADA 72 (205)
T ss_pred HHHHHHhcCCCEEEEcCc-CCCCHHHHHHHHHHHHhhc--CCCEEEE-CCCccc----cCcCCCE
Confidence 344667789999999994 6678888888888887753 6888885 566644 4466774
No 169
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=51.37 E-value=58 Score=30.94 Aligned_cols=39 Identities=28% Similarity=0.340 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCeEe-cCCCChHHHHHHHHcCCcEe
Q psy14115 66 EAKEDFWYSVLVSINCLPKDKPRYV-MGIGFAVDLLICCALGADMF 110 (319)
Q Consensus 66 e~~~e~~~ii~~~~~~LP~dkPr~l-~Gvg~P~~Il~~V~lGvD~F 110 (319)
.+++-+..+++.+ +-|..+ -|+|+|.+...+.++|+|-+
T Consensus 162 ~n~~~l~~i~~~~------~vPvIvDAGiG~pSdaa~AMElG~daV 201 (247)
T PF05690_consen 162 QNPYNLRIIIERA------DVPVIVDAGIGTPSDAAQAMELGADAV 201 (247)
T ss_dssp STHHHHHHHHHHG------SSSBEEES---SHHHHHHHHHTT-SEE
T ss_pred CCHHHHHHHHHhc------CCcEEEeCCCCCHHHHHHHHHcCCcee
Confidence 4455555555544 356776 69999999999999999965
No 170
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=50.92 E-value=76 Score=30.95 Aligned_cols=67 Identities=16% Similarity=0.051 Sum_probs=48.4
Q ss_pred HHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeec
Q psy14115 43 KDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
.+-++.+.+.+++.+.|.-- .| +.+...++++.+.+..| +.|..+-.+.++.+...++..|+|.+..
T Consensus 96 ~~~~~~l~eagv~~I~vd~~-~G-~~~~~~~~i~~ik~~~p-~v~Vi~G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSA-HG-HSVYVIEMIKFIKKKYP-NVDVIAGNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHHhcCCCEEEEECC-CC-CcHHHHHHHHHHHHHCC-CceEEECCCCCHHHHHHHHhcCCCEEEE
Confidence 34566777788888876432 12 22566778888887777 5666554679999999999999998874
No 171
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=50.84 E-value=1.2e+02 Score=30.34 Aligned_cols=85 Identities=18% Similarity=0.215 Sum_probs=53.5
Q ss_pred HHHHHHHhCCCceEEeC-CCC---C-----CCCHHHHHHHHHHhhcCCCC-CCCeEec-CCCChHHHHHHHHcCCcE--e
Q psy14115 44 DCAHQMVEKDVNGFAVG-GLS---G-----GEAKEDFWYSVLVSINCLPK-DKPRYVM-GIGFAVDLLICCALGADM--F 110 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIg-Gl~---~-----ge~~~e~~~ii~~~~~~LP~-dkPr~l~-Gvg~P~~Il~~V~lGvD~--F 110 (319)
+-+++|.+.+++|.-+| |.+ . |-.. -....|..|.+..-. +.|...- |+-++-||+.|+++|.|. +
T Consensus 162 e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~-pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMl 240 (343)
T TIGR01305 162 EMVEELILSGADIVKVGIGPGSVCTTRTKTGVGY-PQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVML 240 (343)
T ss_pred HHHHHHHHcCCCEEEEcccCCCcccCceeCCCCc-CHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEE
Confidence 45667888899999877 221 1 0110 133444444444433 5677775 689999999999999994 5
Q ss_pred ecCCccccCcCCcceeccc
Q psy14115 111 DCVFPTRTARFGSALVRQG 129 (319)
Q Consensus 111 D~~~Ptr~Ar~G~alt~~G 129 (319)
.+.+.-...--|.++..+|
T Consensus 241 G~llAG~~Espg~~i~~~G 259 (343)
T TIGR01305 241 GGMFAGHTESGGEVIERNG 259 (343)
T ss_pred CHhhhCcCcCcceeEeECC
Confidence 6555554444566665554
No 172
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=50.80 E-value=33 Score=30.50 Aligned_cols=69 Identities=16% Similarity=0.082 Sum_probs=48.3
Q ss_pred HHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeE-ecCCCChHHHHHHHHcCCcEeecCCccccC
Q psy14115 45 CAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRY-VMGIGFAVDLLICCALGADMFDCVFPTRTA 119 (319)
Q Consensus 45 s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~-l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~A 119 (319)
-+++..+.++++.-+..+ +++++.++++.+...-| . +.. +.|==+|.+|......|||.+.....+..|
T Consensus 92 e~~ea~~~g~d~I~lD~~----~~~~~~~~v~~l~~~~~-~-v~ie~SGGI~~~ni~~ya~~gvD~isvg~~~~~a 161 (169)
T PF01729_consen 92 EAEEALEAGADIIMLDNM----SPEDLKEAVEELRELNP-R-VKIEASGGITLENIAEYAKTGVDVISVGSLTHSA 161 (169)
T ss_dssp HHHHHHHTT-SEEEEES-----CHHHHHHHHHHHHHHTT-T-SEEEEESSSSTTTHHHHHHTT-SEEEECHHHHSB
T ss_pred HHHHHHHhCCCEEEecCc----CHHHHHHHHHHHhhcCC-c-EEEEEECCCCHHHHHHHHhcCCCEEEcChhhcCC
Confidence 345556688999999886 56888888887644333 3 444 446558999999999999999887766555
No 173
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=50.78 E-value=52 Score=29.67 Aligned_cols=66 Identities=15% Similarity=0.066 Sum_probs=44.0
Q ss_pred HHHHHHHhCCCceEEeCCCCC-CCCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEee
Q psy14115 44 DCAHQMVEKDVNGFAVGGLSG-GEAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFD 111 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl~~-ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD 111 (319)
+-++.+.+.+++++.+.+... |.....-++.++.+.+.. +.|.+.. |+.++.++..+.+.|+|-+=
T Consensus 150 ~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~gv~ 217 (234)
T cd04732 150 ELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAGVI 217 (234)
T ss_pred HHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 345667778899998887632 211112245555555444 3788765 68999999999999999653
No 174
>PRK14566 triosephosphate isomerase; Provisional
Probab=50.75 E-value=55 Score=31.26 Aligned_cols=67 Identities=19% Similarity=0.343 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCceeeeccCC-CCHHHHHHHHHHH-HhCCCceEEeCCCCCCCCHHHHHHHHHHhh
Q psy14115 6 AKDRTVRWLDRCLAAHRNPTTQNIFPIVQGG-LDEALRKDCAHQM-VEKDVNGFAVGGLSGGEAKEDFWYSVLVSI 79 (319)
Q Consensus 6 av~RT~rWl~r~~~~~~~~~~q~lfgiVqGG-~~~dlR~~s~~~l-~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~ 79 (319)
-++++++++++.+... ...-..-..|+=|| ..++ -++++ ...+++|+.|||.|. +.+.|.++++.+.
T Consensus 190 ~a~~v~~~IR~~l~~~-~~~~a~~~rIlYGGSV~~~----N~~~l~~~~dIDG~LVGgASL--~~~~F~~Ii~~~~ 258 (260)
T PRK14566 190 QAQEVHAFIRKRLSEV-SPFIGENIRILYGGSVTPS----NAADLFAQPDVDGGLIGGASL--NSTEFLSLCTIAM 258 (260)
T ss_pred HHHHHHHHHHHHHHhc-CccccccceEEecCCCCHh----HHHHHhcCCCCCeEEechHhc--CHHHHHHHHHHhh
Confidence 3567788888877543 11101123556665 4443 23344 456899999999875 6788999988643
No 175
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.21 E-value=83 Score=30.29 Aligned_cols=67 Identities=10% Similarity=-0.023 Sum_probs=48.3
Q ss_pred HhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCC-CCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCc
Q psy14115 50 VEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCL-PKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTAR 120 (319)
Q Consensus 50 ~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~L-P~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar 120 (319)
.+.+.+...+..+ +++++.+++..+...= +++...-+.|==++.+|....+.|||.+...+++..|.
T Consensus 199 ~~agaDiI~LDn~----~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~galt~sa~ 266 (278)
T PRK08385 199 AKAGADIIMLDNM----TPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLDVDVISLGALTHSVR 266 (278)
T ss_pred HHcCcCEEEECCC----CHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcCCCEEEeChhhcCCC
Confidence 3467888888886 5788888887664432 22222334443389999999999999999999988654
No 176
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=50.19 E-value=26 Score=35.03 Aligned_cols=41 Identities=29% Similarity=0.268 Sum_probs=36.2
Q ss_pred HHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecC
Q psy14115 71 FWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 71 ~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
.|+.|+.+++..| .|..+-||-++++...++++|+|.++.+
T Consensus 224 ~w~~i~~ir~~~~--~pviiKgV~~~eda~~a~~~G~d~I~VS 264 (361)
T cd04736 224 NWQDLRWLRDLWP--HKLLVKGIVTAEDAKRCIELGADGVILS 264 (361)
T ss_pred CHHHHHHHHHhCC--CCEEEecCCCHHHHHHHHHCCcCEEEEC
Confidence 3678888888886 6899999999999999999999999865
No 177
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=50.13 E-value=80 Score=29.83 Aligned_cols=76 Identities=16% Similarity=0.038 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCcc
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPT 116 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Pt 116 (319)
+..+.+.+-++.|.+.|++-.=+|..... .++.+.++.+.. ++.....+.+....+.+|-.+.+.|+|.+...+|.
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG~P~~~---~~~~~~~~~l~~-~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~ 94 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELTSPAAS---PQSRADCEAIAK-LGLKAKILTHIRCHMDDARIAVETGVDGVDLVFGT 94 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHHHHh-CCCCCcEEEEecCCHHHHHHHHHcCcCEEEEEEec
Confidence 67788999999999999999999875433 233444444433 23223335567899999999999999987666554
No 178
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=50.10 E-value=1e+02 Score=31.27 Aligned_cols=87 Identities=13% Similarity=0.135 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCe--Eec-CCCC-hHHHHHHHHcCCcEee
Q psy14115 36 GLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPR--YVM-GIGF-AVDLLICCALGADMFD 111 (319)
Q Consensus 36 G~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr--~l~-Gvg~-P~~Il~~V~lGvD~FD 111 (319)
..+++-..+.++.+.+.+..=+.+....+...+.++.++++.+...+|++.|. |.. -.|. -.+.+.++..|+|.+|
T Consensus 142 rt~~~~l~~~~~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANslaAv~aGa~~v~ 221 (409)
T COG0119 142 RTDPEFLAEVVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQVE 221 (409)
T ss_pred cCCHHHHHHHHHHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHHHHHHcCCcEEE
Confidence 57888888888888888888899999888889999999999999999863332 332 1343 3468899999999999
Q ss_pred cCCccccCcCC
Q psy14115 112 CVFPTRTARFG 122 (319)
Q Consensus 112 ~~~Ptr~Ar~G 122 (319)
++.--.--|.|
T Consensus 222 ~TvnGiGERaG 232 (409)
T COG0119 222 GTVNGIGERAG 232 (409)
T ss_pred Eecccceeccc
Confidence 98765554555
No 179
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=50.08 E-value=67 Score=33.47 Aligned_cols=64 Identities=14% Similarity=-0.006 Sum_probs=48.1
Q ss_pred HHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC--CCChHHHHHHHHcCCcEe
Q psy14115 43 KDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG--IGFAVDLLICCALGADMF 110 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G--vg~P~~Il~~V~lGvD~F 110 (319)
.+-++.|.+.+++-+.|. .+.|- .+...+.|+.+.+..| .+..+.+ +.+|++...++..|+|.+
T Consensus 244 ~~ra~~Lv~aGvd~i~vd-~a~g~-~~~~~~~i~~ir~~~~--~~~~V~aGnV~t~e~a~~li~aGAd~I 309 (502)
T PRK07107 244 AERVPALVEAGADVLCID-SSEGY-SEWQKRTLDWIREKYG--DSVKVGAGNVVDREGFRYLAEAGADFV 309 (502)
T ss_pred HHHHHHHHHhCCCeEeec-Ccccc-cHHHHHHHHHHHHhCC--CCceEEeccccCHHHHHHHHHcCCCEE
Confidence 345666888899999998 44443 3334688888888887 3345555 899999999999999987
No 180
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=49.95 E-value=2.2e+02 Score=26.59 Aligned_cols=94 Identities=12% Similarity=-0.022 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEe-------------CCCCCCCCHHHHHHHHH
Q psy14115 10 TVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAV-------------GGLSGGEAKEDFWYSVL 76 (319)
Q Consensus 10 T~rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aI-------------gGl~~ge~~~e~~~ii~ 76 (319)
-..|+++-+..-+. .. .+.+-.|+.+++.-.++++.+.+ .++++-| +|...+.+++.+.++++
T Consensus 53 ~~~~i~~e~~~~~~--~~-~vivnv~~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~ 128 (231)
T TIGR00736 53 FNSYIIEQIKKAES--RA-LVSVNVRFVDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLT 128 (231)
T ss_pred HHHHHHHHHHHHhh--cC-CEEEEEecCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHH
Confidence 35788877765542 12 44455567888888888888755 6666665 34445678888999999
Q ss_pred HhhcCCCCCCCeEe-cCCCC----hHHHH-HHHHcCCcEe
Q psy14115 77 VSINCLPKDKPRYV-MGIGF----AVDLL-ICCALGADMF 110 (319)
Q Consensus 77 ~~~~~LP~dkPr~l-~Gvg~----P~~Il-~~V~lGvD~F 110 (319)
.+.+. ++|..+ +-.+. ..++. .+...|+|.+
T Consensus 129 av~~~---~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i 165 (231)
T TIGR00736 129 KMKEL---NKPIFVKIRGNCIPLDELIDALNLVDDGFDGI 165 (231)
T ss_pred HHHcC---CCcEEEEeCCCCCcchHHHHHHHHHHcCCCEE
Confidence 98843 578776 33322 22343 4568999987
No 181
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=49.69 E-value=55 Score=29.96 Aligned_cols=70 Identities=13% Similarity=0.064 Sum_probs=47.8
Q ss_pred HHHHHHHhCCCceEEeCCCCCCCC-HHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHc-CCcEeecCCc
Q psy14115 44 DCAHQMVEKDVNGFAVGGLSGGEA-KEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCAL-GADMFDCVFP 115 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl~~ge~-~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~l-GvD~FD~~~P 115 (319)
+-++.+.+.+++.+.+.+.....+ ..-.++.+..+.+.+ +.|.+.- |+.+|.++..+.+. |+|.+-...+
T Consensus 153 ~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~a 225 (243)
T cd04731 153 EWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASI 225 (243)
T ss_pred HHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHH
Confidence 445677788999999988743111 111345555555544 5888876 58999999999997 9998766444
No 182
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=49.55 E-value=55 Score=31.11 Aligned_cols=63 Identities=14% Similarity=0.028 Sum_probs=47.0
Q ss_pred HhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCc
Q psy14115 50 VEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTAR 120 (319)
Q Consensus 50 ~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar 120 (319)
.+.+.+.+.++.++ ++++.++++. ++...|....|==++.++....+.|+|.+-...++..|.
T Consensus 195 ~~~gaDyI~ld~~~----~e~lk~~v~~----~~~~ipi~AsGGI~~~ni~~~a~~Gvd~Isvgait~sa~ 257 (265)
T TIGR00078 195 AEAGADIIMLDNMK----PEEIKEAVQL----LKGRVLLEASGGITLDNLEEYAETGVDVISSGALTHSVP 257 (265)
T ss_pred HHcCCCEEEECCCC----HHHHHHHHHH----hcCCCcEEEECCCCHHHHHHHHHcCCCEEEeCHHHcCCC
Confidence 45678888888764 4666666655 333467777764489999999999999999988887664
No 183
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=48.95 E-value=1.1e+02 Score=28.88 Aligned_cols=76 Identities=20% Similarity=0.106 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhCCCceEEeCCCCCCC-----C-HHH---HHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCc
Q psy14115 38 DEALRKDCAHQMVEKDVNGFAVGGLSGGE-----A-KED---FWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGAD 108 (319)
Q Consensus 38 ~~dlR~~s~~~l~~~~~~G~aIgGl~~ge-----~-~~e---~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD 108 (319)
+++.-.+-++++.+.|.+-.=|||.+... + .+| +..+|+.+.+.. +.| ...-...|.-+-.|++.|+|
T Consensus 21 ~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~--~~p-lsiDT~~~~vi~~al~~G~~ 97 (257)
T TIGR01496 21 SVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP--DVP-ISVDTYRAEVARAALEAGAD 97 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC--CCe-EEEeCCCHHHHHHHHHcCCC
Confidence 44555666777888999999999865421 2 234 444555544332 455 34566889999999999999
Q ss_pred EeecCCcc
Q psy14115 109 MFDCVFPT 116 (319)
Q Consensus 109 ~FD~~~Pt 116 (319)
++-++.-.
T Consensus 98 iINsis~~ 105 (257)
T TIGR01496 98 IINDVSGG 105 (257)
T ss_pred EEEECCCC
Confidence 99877554
No 184
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.78 E-value=88 Score=28.69 Aligned_cols=80 Identities=10% Similarity=0.030 Sum_probs=59.5
Q ss_pred CCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCC---ChHHHHHH
Q psy14115 26 TQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIG---FAVDLLIC 102 (319)
Q Consensus 26 ~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg---~P~~Il~~ 102 (319)
.+.+++|+-| .+++.=..-++.+.+-++.-+-|-=- ...-.+.|+...+..| ..+.|+| ++++.-.+
T Consensus 3 ~~~vv~Vir~-~~~~~a~~ia~al~~gGi~~iEit~~-----tp~a~~~I~~l~~~~~----~~~vGAGTVl~~e~a~~a 72 (201)
T PRK06015 3 LQPVIPVLLI-DDVEHAVPLARALAAGGLPAIEITLR-----TPAALDAIRAVAAEVE----EAIVGAGTILNAKQFEDA 72 (201)
T ss_pred CCCEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCC-----CccHHHHHHHHHHHCC----CCEEeeEeCcCHHHHHHH
Confidence 3678999996 78888888899999988888776542 2234455666555554 4677887 58899999
Q ss_pred HHcCCcEeecCCc
Q psy14115 103 CALGADMFDCVFP 115 (319)
Q Consensus 103 V~lGvD~FD~~~P 115 (319)
++.|.+.+-++.-
T Consensus 73 i~aGA~FivSP~~ 85 (201)
T PRK06015 73 AKAGSRFIVSPGT 85 (201)
T ss_pred HHcCCCEEECCCC
Confidence 9999999877643
No 185
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.65 E-value=91 Score=28.66 Aligned_cols=82 Identities=13% Similarity=0.130 Sum_probs=59.7
Q ss_pred CceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCC---ChHHHHHHH
Q psy14115 27 QNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIG---FAVDLLICC 103 (319)
Q Consensus 27 q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg---~P~~Il~~V 103 (319)
+.+++|+-+ .+.+.=..-++.|.+-++.-+-|-=- ...-.+.|+.+.+..| ++|..+.|+| +++++-.++
T Consensus 13 ~~vi~vir~-~~~~~a~~~~~al~~~Gi~~iEit~~-----~~~a~~~i~~l~~~~~-~~p~~~vGaGTV~~~~~~~~a~ 85 (213)
T PRK06552 13 NGVVAVVRG-ESKEEALKISLAVIKGGIKAIEVTYT-----NPFASEVIKELVELYK-DDPEVLIGAGTVLDAVTARLAI 85 (213)
T ss_pred CCEEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEECC-----CccHHHHHHHHHHHcC-CCCCeEEeeeeCCCHHHHHHHH
Confidence 569999997 77777778888898888887776542 2234455555555553 4466778987 589999999
Q ss_pred HcCCcEeecCCc
Q psy14115 104 ALGADMFDCVFP 115 (319)
Q Consensus 104 ~lGvD~FD~~~P 115 (319)
+.|.+.+-++-.
T Consensus 86 ~aGA~FivsP~~ 97 (213)
T PRK06552 86 LAGAQFIVSPSF 97 (213)
T ss_pred HcCCCEEECCCC
Confidence 999998876543
No 186
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.48 E-value=90 Score=30.20 Aligned_cols=66 Identities=9% Similarity=-0.015 Sum_probs=48.0
Q ss_pred HhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCc
Q psy14115 50 VEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTAR 120 (319)
Q Consensus 50 ~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar 120 (319)
.+.+.+.+.++.+ +++++.+++..+...- ++.|.-..|==++.+|....+.|||.+....++..|.
T Consensus 213 ~~~GaD~I~LDn~----~~e~l~~av~~~~~~~-~~i~leAsGGIt~~ni~~ya~tGvD~Isvgsl~~sa~ 278 (288)
T PRK07428 213 LEYGADIIMLDNM----PVDLMQQAVQLIRQQN-PRVKIEASGNITLETIRAVAETGVDYISSSAPITRSP 278 (288)
T ss_pred HHcCCCEEEECCC----CHHHHHHHHHHHHhcC-CCeEEEEECCCCHHHHHHHHHcCCCEEEEchhhhCCC
Confidence 3467888888865 4577777777543322 2445566654489999999999999999999887653
No 187
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=47.90 E-value=78 Score=31.17 Aligned_cols=68 Identities=16% Similarity=0.122 Sum_probs=44.1
Q ss_pred HHHHHHHhCCCceEEeCCCCCC---C------CHHH-HHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEeec
Q psy14115 44 DCAHQMVEKDVNGFAVGGLSGG---E------AKED-FWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl~~g---e------~~~e-~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
+.++.+.+.++++..+|+-++- + .... -...+..+.+.+ +.|.... |+-+|.||..|+++|+|..=+
T Consensus 152 e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~--~ipVIAdGGI~~~~Di~KaLa~GA~aV~v 229 (326)
T PRK05458 152 EAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGATMVMI 229 (326)
T ss_pred HHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHhCCCEEEe
Confidence 3567778899999988853320 1 0010 112344444433 4787776 689999999999999997544
Q ss_pred C
Q psy14115 113 V 113 (319)
Q Consensus 113 ~ 113 (319)
-
T Consensus 230 G 230 (326)
T PRK05458 230 G 230 (326)
T ss_pred c
Confidence 3
No 188
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=47.85 E-value=2.3e+02 Score=28.30 Aligned_cols=71 Identities=20% Similarity=0.153 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHh--CCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEe
Q psy14115 36 GLDEALRKDCAHQMVE--KDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMF 110 (319)
Q Consensus 36 G~~~dlR~~s~~~l~~--~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~F 110 (319)
|..++-..+ ++.|.+ .+++-..|.-..+ ..+.+.++|+.+.+..| +.+...=.|++|+....++..|+|.+
T Consensus 104 G~~~~d~er-~~~L~~~~~g~D~iviD~AhG--hs~~~i~~ik~ik~~~P-~~~vIaGNV~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 104 GTSDADFEK-TKQILALSPALNFICIDVANG--YSEHFVQFVAKAREAWP-DKTICAGNVVTGEMVEELILSGADIV 176 (346)
T ss_pred cCCHHHHHH-HHHHHhcCCCCCEEEEECCCC--cHHHHHHHHHHHHHhCC-CCcEEEecccCHHHHHHHHHcCCCEE
Confidence 466554433 345555 4788888875432 45667889999999887 46655545899999999999999987
No 189
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=47.71 E-value=1e+02 Score=28.88 Aligned_cols=87 Identities=15% Similarity=0.123 Sum_probs=58.7
Q ss_pred CceeeeccCCCCH-HHH----HHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHH
Q psy14115 27 QNIFPIVQGGLDE-ALR----KDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLL 100 (319)
Q Consensus 27 q~lfgiVqGG~~~-dlR----~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il 100 (319)
-.++|||-=.++. +.| .+.+++|.+.+.+-.|+.+..---+...+.+++.. ..-| -.++| -++++++.+
T Consensus 67 vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~--~k~~---~~l~MAD~St~ee~l 141 (229)
T COG3010 67 VPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDGDLEELIAR--IKYP---GQLAMADCSTFEEGL 141 (229)
T ss_pred CCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHH--hhcC---CcEEEeccCCHHHHH
Confidence 4578887654432 133 56788899999999999986432222256666665 1112 23455 579999999
Q ss_pred HHHHcCCcEeecCCcccc
Q psy14115 101 ICCALGADMFDCVFPTRT 118 (319)
Q Consensus 101 ~~V~lGvD~FD~~~Ptr~ 118 (319)
.|.++|+|++-++..-.+
T Consensus 142 ~a~~~G~D~IGTTLsGYT 159 (229)
T COG3010 142 NAHKLGFDIIGTTLSGYT 159 (229)
T ss_pred HHHHcCCcEEeccccccc
Confidence 999999999987765433
No 190
>PLN02979 glycolate oxidase
Probab=47.39 E-value=32 Score=34.49 Aligned_cols=40 Identities=23% Similarity=0.151 Sum_probs=33.7
Q ss_pred HHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecC
Q psy14115 72 WYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 72 ~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
|+-|+++++.. +.|..+=||.++.+...++++|+|.++.+
T Consensus 212 W~dl~wlr~~~--~~PvivKgV~~~~dA~~a~~~Gvd~I~Vs 251 (366)
T PLN02979 212 WKDVQWLQTIT--KLPILVKGVLTGEDARIAIQAGAAGIIVS 251 (366)
T ss_pred HHHHHHHHhcc--CCCEEeecCCCHHHHHHHHhcCCCEEEEC
Confidence 56677777665 48999999999999999999999998654
No 191
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=47.37 E-value=1.3e+02 Score=29.55 Aligned_cols=77 Identities=21% Similarity=0.214 Sum_probs=52.2
Q ss_pred ccCCCCHHHHHHHHHHHHhCC-CceEEeC-CCCCC------------CCHHHHHHHHHHhhcCCCCCCCeEecC-CCChH
Q psy14115 33 VQGGLDEALRKDCAHQMVEKD-VNGFAVG-GLSGG------------EAKEDFWYSVLVSINCLPKDKPRYVMG-IGFAV 97 (319)
Q Consensus 33 VqGG~~~dlR~~s~~~l~~~~-~~G~aIg-Gl~~g------------e~~~e~~~ii~~~~~~LP~dkPr~l~G-vg~P~ 97 (319)
+.||.+.+.-.+-++.|.+.+ ++-+.|. |.... ....-+++.+..+.+.+ +.|....| +-+|+
T Consensus 221 ~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G~i~~~~ 298 (343)
T cd04734 221 TEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV--DLPVFHAGRIRDPA 298 (343)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc--CCCEEeeCCCCCHH
Confidence 467777776677888888887 8888883 32110 01112356666666655 47888876 68999
Q ss_pred HHHHHHHcC-CcEee
Q psy14115 98 DLLICCALG-ADMFD 111 (319)
Q Consensus 98 ~Il~~V~lG-vD~FD 111 (319)
++..+++.| +|++-
T Consensus 299 ~~~~~l~~~~~D~V~ 313 (343)
T cd04734 299 EAEQALAAGHADMVG 313 (343)
T ss_pred HHHHHHHcCCCCeee
Confidence 999999977 78763
No 192
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=47.19 E-value=1.1e+02 Score=30.43 Aligned_cols=80 Identities=18% Similarity=0.132 Sum_probs=55.6
Q ss_pred CCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHc
Q psy14115 26 TQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCAL 105 (319)
Q Consensus 26 ~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~l 105 (319)
.+.+.+.-.|-.+.+ .+-++.|.+.+++-+.|....+ +.+...+.++.+....| +.|...=.|.+++....++..
T Consensus 95 ~~l~V~aavg~~~~~--~er~~~L~~agvD~ivID~a~g--~s~~~~~~ik~ik~~~~-~~~viaGNV~T~e~a~~L~~a 169 (352)
T PF00478_consen 95 GRLLVAAAVGTRDDD--FERAEALVEAGVDVIVIDSAHG--HSEHVIDMIKKIKKKFP-DVPVIAGNVVTYEGAKDLIDA 169 (352)
T ss_dssp SCBCEEEEEESSTCH--HHHHHHHHHTT-SEEEEE-SST--TSHHHHHHHHHHHHHST-TSEEEEEEE-SHHHHHHHHHT
T ss_pred ccceEEEEecCCHHH--HHHHHHHHHcCCCEEEccccCc--cHHHHHHHHHHHHHhCC-CceEEecccCCHHHHHHHHHc
Confidence 456666666533322 3345667788999999987543 34556778888888888 677776568999999999999
Q ss_pred CCcEe
Q psy14115 106 GADMF 110 (319)
Q Consensus 106 GvD~F 110 (319)
|+|.+
T Consensus 170 Gad~v 174 (352)
T PF00478_consen 170 GADAV 174 (352)
T ss_dssp T-SEE
T ss_pred CCCEE
Confidence 99987
No 193
>PRK07094 biotin synthase; Provisional
Probab=47.13 E-value=1.6e+02 Score=28.11 Aligned_cols=73 Identities=11% Similarity=-0.044 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhCCCceEEeCC-CCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEee
Q psy14115 38 DEALRKDCAHQMVEKDVNGFAVGG-LSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFD 111 (319)
Q Consensus 38 ~~dlR~~s~~~l~~~~~~G~aIgG-l~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD 111 (319)
.++.-.+-++.+.+.++..+.+.| -....+.+.+.++++.+.+. +.-...+..|.-+++.+-.+...|+|.+-
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~-~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~ 144 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKE-LDVAITLSLGERSYEEYKAWKEAGADRYL 144 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHcc-CCceEEEecCCCCHHHHHHHHHcCCCEEE
Confidence 344444556667778888888754 22223567788888887765 32122333455678888889999999764
No 194
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=46.76 E-value=33 Score=34.33 Aligned_cols=40 Identities=23% Similarity=0.151 Sum_probs=33.4
Q ss_pred HHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecC
Q psy14115 72 WYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 72 ~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
|+-|+++++.. +.|..+=||.++.+...++..|+|.++.+
T Consensus 213 W~di~wlr~~~--~~PiivKgV~~~~dA~~a~~~Gvd~I~Vs 252 (367)
T PLN02493 213 WKDVQWLQTIT--KLPILVKGVLTGEDARIAIQAGAAGIIVS 252 (367)
T ss_pred HHHHHHHHhcc--CCCEEeecCCCHHHHHHHHHcCCCEEEEC
Confidence 55667777654 48999999999999999999999998654
No 195
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=46.64 E-value=1.3e+02 Score=28.71 Aligned_cols=62 Identities=16% Similarity=-0.001 Sum_probs=44.8
Q ss_pred HhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCcc
Q psy14115 50 VEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPT 116 (319)
Q Consensus 50 ~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Pt 116 (319)
.+.+.+...+|.+. ++++.+.++.+.... ++.|....|==+|.++....+.|+|.+-...++
T Consensus 200 ~~~gaD~I~ld~~~----p~~l~~~~~~~~~~~-~~i~i~AsGGI~~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 200 AEAGADILQLDKFS----PEELAELVPKLRSLA-PPVLLAAAGGINIENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred HHcCCCEEEECCCC----HHHHHHHHHHHhccC-CCceEEEECCCCHHHHHHHHHcCCcEEEEChhh
Confidence 35788888888764 456666666554433 367888886338999999999999999555554
No 196
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=46.64 E-value=2.7e+02 Score=26.59 Aligned_cols=98 Identities=8% Similarity=-0.039 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhcC--CCCCceeeeccCCCCHHHHHHHHHHHHhC---CCceEEe--------CCCCCCCCHHHHHHHHHH
Q psy14115 11 VRWLDRCLAAHRN--PTTQNIFPIVQGGLDEALRKDCAHQMVEK---DVNGFAV--------GGLSGGEAKEDFWYSVLV 77 (319)
Q Consensus 11 ~rWl~r~~~~~~~--~~~q~lfgiVqGG~~~dlR~~s~~~l~~~---~~~G~aI--------gGl~~ge~~~e~~~ii~~ 77 (319)
..|+++..+..+. .....+++.|-|. ++.-.++++.+.+. +++++-+ |+-..+.+++.+.++++.
T Consensus 74 ~~~~~~i~~~~~~~~~~~~pvivsi~g~--~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~ 151 (294)
T cd04741 74 DYYLEYIRTISDGLPGSAKPFFISVTGS--AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTA 151 (294)
T ss_pred HHHHHHHHHHhhhccccCCeEEEECCCC--HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHH
Confidence 3566654433221 1235677788765 66666777777663 4666654 222345578888999999
Q ss_pred hhcCCCCCCCeEe-cCCC-ChHHHHHHH----Hc--CCcEeec
Q psy14115 78 SINCLPKDKPRYV-MGIG-FAVDLLICC----AL--GADMFDC 112 (319)
Q Consensus 78 ~~~~LP~dkPr~l-~Gvg-~P~~Il~~V----~l--GvD~FD~ 112 (319)
+.+.+ ++|..+ +..+ ++.++..++ +. |+|.+-.
T Consensus 152 v~~~~--~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~ 192 (294)
T cd04741 152 VKAAY--SIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITA 192 (294)
T ss_pred HHHhc--CCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEE
Confidence 88876 478776 4443 333444333 34 7776543
No 197
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=46.30 E-value=60 Score=29.29 Aligned_cols=63 Identities=11% Similarity=0.015 Sum_probs=38.9
Q ss_pred HHHHhCCCceEEeC--CCCCCC--CHHHHHHHHHHhhcCCCCCCCeEe-cCCCChHHHHHHHHcCCcEee
Q psy14115 47 HQMVEKDVNGFAVG--GLSGGE--AKEDFWYSVLVSINCLPKDKPRYV-MGIGFAVDLLICCALGADMFD 111 (319)
Q Consensus 47 ~~l~~~~~~G~aIg--Gl~~ge--~~~e~~~ii~~~~~~LP~dkPr~l-~Gvg~P~~Il~~V~lGvD~FD 111 (319)
+.+.+.+++.+.++ |..... ......+.+..+.+.+ +.|... -|+.+|.++..+.++|+|.+=
T Consensus 133 ~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~~~~~~~l~~GadgV~ 200 (221)
T PRK01130 133 LAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINTPEQAKKALELGAHAVV 200 (221)
T ss_pred HHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEE
Confidence 44556677766553 322111 1111234555555544 578876 578999999999999999763
No 198
>PRK14567 triosephosphate isomerase; Provisional
Probab=46.21 E-value=93 Score=29.59 Aligned_cols=65 Identities=26% Similarity=0.341 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCceeeeccCC-CCHHHHHHHHHHHHh-CCCceEEeCCCCCCCCHHHHHHHHHH
Q psy14115 6 AKDRTVRWLDRCLAAHRNPTTQNIFPIVQGG-LDEALRKDCAHQMVE-KDVNGFAVGGLSGGEAKEDFWYSVLV 77 (319)
Q Consensus 6 av~RT~rWl~r~~~~~~~~~~q~lfgiVqGG-~~~dlR~~s~~~l~~-~~~~G~aIgGl~~ge~~~e~~~ii~~ 77 (319)
-++++++++++.+......-.+. ..|+-|| ..++ -++++.+ .+++|+.|||.+. +.++|.++++.
T Consensus 180 ~i~~~~~~IR~~l~~~~~~~a~~-v~IlYGGSV~~~----N~~~l~~~~diDG~LVGgasL--~~~~F~~Ii~~ 246 (253)
T PRK14567 180 QIQETHQFIRSLLAKVDERLAKN-IKIVYGGSLKAE----NAKDILSLPDVDGGLIGGASL--KAAEFNEIINQ 246 (253)
T ss_pred HHHHHHHHHHHHHHhhccccccc-ceEEEcCcCCHH----HHHHHHcCCCCCEEEeehhhh--cHHHHHHHHHH
Confidence 45677777777665421110122 3455555 4433 3444544 4699999999875 67888888875
No 199
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=46.17 E-value=30 Score=34.16 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=35.1
Q ss_pred HHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecC
Q psy14115 71 FWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 71 ~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
.|+.|+.+++.. +.|..+-|++++.+...+++.|+|.++.+
T Consensus 201 ~~~~i~~l~~~~--~~PvivKgv~~~~dA~~a~~~G~d~I~vs 241 (344)
T cd02922 201 TWDDIKWLRKHT--KLPIVLKGVQTVEDAVLAAEYGVDGIVLS 241 (344)
T ss_pred CHHHHHHHHHhc--CCcEEEEcCCCHHHHHHHHHcCCCEEEEE
Confidence 366777777776 48999999999999999999999999876
No 200
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=46.11 E-value=63 Score=31.24 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=42.4
Q ss_pred HHHHHhCCCceEEeCCCCCCCC--HHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEeec
Q psy14115 46 AHQMVEKDVNGFAVGGLSGGEA--KEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 46 ~~~l~~~~~~G~aIgGl~~ge~--~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
++.+.+.+++++.+-|...|.. ....+.++..+.+.+ +.|...- |++++.++..+.++|+|-+=.
T Consensus 122 a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~--~iPviaaGGI~~~~~~~~al~~GA~gV~i 189 (307)
T TIGR03151 122 AKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAV--SIPVIAAGGIADGRGMAAAFALGAEAVQM 189 (307)
T ss_pred HHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHcCCCEeec
Confidence 3455567899988755422211 111245555555554 3788877 589999999999999997633
No 201
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=46.04 E-value=1.2e+02 Score=26.63 Aligned_cols=29 Identities=17% Similarity=0.107 Sum_probs=24.4
Q ss_pred CCeEecCCCChHHHHHHHHcCCcEeecCC
Q psy14115 86 KPRYVMGIGFAVDLLICCALGADMFDCVF 114 (319)
Q Consensus 86 kPr~l~Gvg~P~~Il~~V~lGvD~FD~~~ 114 (319)
....+-||-++.+.-.+-.+|+|.+-..|
T Consensus 204 ~~via~gVe~~~~~~~l~~~Gi~~~QG~~ 232 (241)
T smart00052 204 LQVVAEGVETPEQLDLLRSLGCDYGQGYL 232 (241)
T ss_pred CeEEEecCCCHHHHHHHHHcCCCEEeece
Confidence 45667899999999999999999886544
No 202
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=45.73 E-value=31 Score=33.34 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=38.8
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEeec
Q psy14115 60 GGLSGGEAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 60 gGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
||+|+-.-+.--.+.|..+...++.+.|..-. ||.+++|.++.+.+|+|.+-.
T Consensus 216 GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv 269 (310)
T PRK02506 216 GGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQV 269 (310)
T ss_pred CcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 44444333344456777777788777888766 689999999999999998654
No 203
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=45.53 E-value=52 Score=36.57 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC---CCC-hHHHHHHHHcCCcEeecC
Q psy14115 38 DEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG---IGF-AVDLLICCALGADMFDCV 113 (319)
Q Consensus 38 ~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G---vg~-P~~Il~~V~lGvD~FD~~ 113 (319)
+.+-...-+++|.+.+..-++|-...+...+..-.+++....+.. |.|.|+.. .|. ....+.|+..|+|++|..
T Consensus 692 ~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~--dlPIHlHTHDTsG~~~at~~aA~~AGvDivD~A 769 (1149)
T COG1038 692 TLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV--DLPIHLHTHDTSGNGVATYLAAVEAGVDIVDVA 769 (1149)
T ss_pred cHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc--CCceEEeccCCCccHHHHHHHHHHcCCchhhhh
Confidence 445667789999999999999999888888888888888888876 79999863 243 456889999999999987
Q ss_pred Cccc
Q psy14115 114 FPTR 117 (319)
Q Consensus 114 ~Ptr 117 (319)
....
T Consensus 770 ~~sm 773 (1149)
T COG1038 770 MASM 773 (1149)
T ss_pred hhhc
Confidence 6543
No 204
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=45.48 E-value=1.2e+02 Score=26.46 Aligned_cols=81 Identities=22% Similarity=0.143 Sum_probs=59.7
Q ss_pred ceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCC
Q psy14115 28 NIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGA 107 (319)
Q Consensus 28 ~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGv 107 (319)
.=|-+|-+|.... -.+.++...+.+++...+.+++.+ ..+.+..+++.+.+.=..+-..++=|+=.|.++...-++|+
T Consensus 39 ~GfeVi~~g~~~t-p~e~v~aA~~~dv~vIgvSsl~g~-h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~ 116 (143)
T COG2185 39 AGFEVINLGLFQT-PEEAVRAAVEEDVDVIGVSSLDGG-HLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGV 116 (143)
T ss_pred CCceEEecCCcCC-HHHHHHHHHhcCCCEEEEEeccch-HHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCc
Confidence 3455666665422 266777778889999999998653 56778888888887766666555556778999999999999
Q ss_pred cEe
Q psy14115 108 DMF 110 (319)
Q Consensus 108 D~F 110 (319)
|-+
T Consensus 117 ~~i 119 (143)
T COG2185 117 DRI 119 (143)
T ss_pred cee
Confidence 854
No 205
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=45.28 E-value=1.1e+02 Score=29.67 Aligned_cols=67 Identities=13% Similarity=0.051 Sum_probs=48.5
Q ss_pred HHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCc
Q psy14115 48 QMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTAR 120 (319)
Q Consensus 48 ~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar 120 (319)
+..+.+.+-..+..+ +++++.+.++.. .++...-.=+.|==+|.+|..-...|||.|-..+||..++
T Consensus 203 eAl~agaDiImLDNm----~~e~~~~av~~l--~~~~~~~lEaSGgIt~~ni~~yA~tGVD~IS~galths~~ 269 (280)
T COG0157 203 EALEAGADIIMLDNM----SPEELKEAVKLL--GLAGRALLEASGGITLENIREYAETGVDVISVGALTHSAP 269 (280)
T ss_pred HHHHcCCCEEEecCC----CHHHHHHHHHHh--ccCCceEEEEeCCCCHHHHHHHhhcCCCEEEeCccccCCc
Confidence 334567788887775 567888887765 3332222223455589999999999999999999998886
No 206
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=45.20 E-value=1.3e+02 Score=28.81 Aligned_cols=67 Identities=15% Similarity=0.090 Sum_probs=46.9
Q ss_pred HHHHHHHhCCCceEEeCCCCC--CCCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHH-HcCCcEeec
Q psy14115 44 DCAHQMVEKDVNGFAVGGLSG--GEAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICC-ALGADMFDC 112 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl~~--ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V-~lGvD~FD~ 112 (319)
+-++.+.+.+++++.+.|-.. +.+..-.++.+..+.+.++ .|...- |+.+|+++..++ ..|+|.+-.
T Consensus 151 ~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~--ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 151 EAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVR--IPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred HHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCC--CcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 445667778899998866321 1222234677777777765 787776 589999999999 678998765
No 207
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=45.14 E-value=5.6 Score=39.96 Aligned_cols=18 Identities=50% Similarity=0.680 Sum_probs=14.9
Q ss_pred ccccCCCCccccCCCCce
Q psy14115 280 HKFMGWKRALLTDSGGFQ 297 (319)
Q Consensus 280 h~f~~w~~~ilTDSGgfQ 297 (319)
|.+|.=..-|||||||-|
T Consensus 276 ~~L~~~a~~iltDSGgiq 293 (383)
T COG0381 276 HNLMKNAFLILTDSGGIQ 293 (383)
T ss_pred HHHHHhceEEEecCCchh
Confidence 556666789999999988
No 208
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=44.79 E-value=2.2e+02 Score=26.33 Aligned_cols=41 Identities=20% Similarity=0.083 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhcCCCCCCCeEe-cCCCChHHHHHHHHcCCcEeec
Q psy14115 69 EDFWYSVLVSINCLPKDKPRYV-MGIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 69 ~e~~~ii~~~~~~LP~dkPr~l-~Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
....+.++.+.+. .+.|..+ .|+-+|+++..+++. +|.+-.
T Consensus 173 ~~~~~~i~~lr~~--~~~pI~vggGI~~~e~~~~~~~~-ADgvVv 214 (242)
T cd04724 173 DDLKELIKRIRKY--TDLPIAVGFGISTPEQAAEVAKY-ADGVIV 214 (242)
T ss_pred hhHHHHHHHHHhc--CCCcEEEEccCCCHHHHHHHHcc-CCEEEE
Confidence 4566777777765 2788888 688899999999999 997644
No 209
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=44.71 E-value=74 Score=29.59 Aligned_cols=66 Identities=12% Similarity=0.081 Sum_probs=44.7
Q ss_pred HHHHHHHHhCCCceEEeCCCCC-CCCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcC-CcEe
Q psy14115 43 KDCAHQMVEKDVNGFAVGGLSG-GEAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALG-ADMF 110 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgGl~~-ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lG-vD~F 110 (319)
.+-++.+.+.+++.+.+-+... |....--++.+..+.+.. +.|.+.. |+.+|+++..+...| +|.+
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~g~~dgv 226 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTKGKADAA 226 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCccee
Confidence 4556777788999998866532 111111234455555544 4788876 589999999999998 9986
No 210
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=44.65 E-value=51 Score=28.91 Aligned_cols=43 Identities=16% Similarity=0.082 Sum_probs=27.7
Q ss_pred HHHHHHhhcCCC---CCCCeEecC-CCChHHHHHHHHcCCcEeecCCc
Q psy14115 72 WYSVLVSINCLP---KDKPRYVMG-IGFAVDLLICCALGADMFDCVFP 115 (319)
Q Consensus 72 ~~ii~~~~~~LP---~dkPr~l~G-vg~P~~Il~~V~lGvD~FD~~~P 115 (319)
.+.++.+.+..+ .+.|..+-| +. |+++..++..|+|.+-...+
T Consensus 150 ~~~i~~~~~~~~~~~~~~pi~v~GGI~-~env~~~~~~gad~iivgsa 196 (211)
T cd00429 150 LEKIRKLRELIPENNLNLLIEVDGGIN-LETIPLLAEAGADVLVAGSA 196 (211)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEECHH
Confidence 344444444433 246776654 44 79999999999998765443
No 211
>PF03716 WCCH: WCCH motif ; InterPro: IPR005159 The WCCH motif is found in a retrotransposons and Gemini viruses. A specific function has not been associated to this motif [].
Probab=44.48 E-value=13 Score=22.94 Aligned_cols=14 Identities=43% Similarity=0.980 Sum_probs=12.3
Q ss_pred CCCCCCCCcccCcC
Q psy14115 144 PIDNQCPCSTCARY 157 (319)
Q Consensus 144 Pi~~~C~C~tC~~~ 157 (319)
|+-++|.|+-|-+|
T Consensus 1 p~~~pC~cphCprH 14 (25)
T PF03716_consen 1 PIWQPCCCPHCPRH 14 (25)
T ss_pred CcccccCCCCCccc
Confidence 67789999999887
No 212
>PLN02535 glycolate oxidase
Probab=44.16 E-value=37 Score=33.93 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=35.0
Q ss_pred HHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecC
Q psy14115 71 FWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 71 ~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
-|+.|+.+++.. +.|..+=||-+|.+...++++|+|.++.+
T Consensus 211 tW~~i~~lr~~~--~~PvivKgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 211 SWKDIEWLRSIT--NLPILIKGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred CHHHHHHHHhcc--CCCEEEecCCCHHHHHHHHhcCCCEEEEe
Confidence 367778777765 48999999999999999999999999765
No 213
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=43.70 E-value=82 Score=28.42 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=44.5
Q ss_pred HHHHHHHHhCCCceEEeCCCCC-CCCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEee
Q psy14115 43 KDCAHQMVEKDVNGFAVGGLSG-GEAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFD 111 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgGl~~-ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD 111 (319)
.+.++.+.+.+++++.+.+.+. |.....-++++..+.+.. +.|...- |+.+++++..+.+.|+|-+=
T Consensus 148 ~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~~Gadgv~ 216 (230)
T TIGR00007 148 EELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVKAV--NVPVIASGGVSSIDDLIALKKLGVYGVI 216 (230)
T ss_pred HHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEE
Confidence 3466777788999998776532 211111244555555543 4777764 69999999999999999643
No 214
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=43.23 E-value=2.4e+02 Score=27.88 Aligned_cols=74 Identities=18% Similarity=0.116 Sum_probs=48.2
Q ss_pred ccCCCCHHH-HHHHHHHHHhCCCceEEeCCCC--CCCC-HHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcC-C
Q psy14115 33 VQGGLDEAL-RKDCAHQMVEKDVNGFAVGGLS--GGEA-KEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALG-A 107 (319)
Q Consensus 33 VqGG~~~dl-R~~s~~~l~~~~~~G~aIgGl~--~ge~-~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lG-v 107 (319)
+.||...+. -.+-++.|.+.+++-+-+.+.. .++. ...+.+.|+ +.++ .|..+-|.-+|+.+-.+++-| +
T Consensus 241 ~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik---~~~~--~pv~~~G~~~~~~ae~~i~~G~~ 315 (362)
T PRK10605 241 VDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVR---ARFH--GVIIGAGAYTAEKAETLIGKGLI 315 (362)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHH---HHCC--CCEEEeCCCCHHHHHHHHHcCCC
Confidence 457788776 5777888888888777666421 1111 122333333 3333 578877766999999999999 7
Q ss_pred cEee
Q psy14115 108 DMFD 111 (319)
Q Consensus 108 D~FD 111 (319)
|++-
T Consensus 316 D~V~ 319 (362)
T PRK10605 316 DAVA 319 (362)
T ss_pred CEEE
Confidence 8863
No 215
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=43.20 E-value=96 Score=29.83 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=23.4
Q ss_pred CCeEe-cCCCChHHHHHHHHcCCcEeecCC
Q psy14115 86 KPRYV-MGIGFAVDLLICCALGADMFDCVF 114 (319)
Q Consensus 86 kPr~l-~Gvg~P~~Il~~V~lGvD~FD~~~ 114 (319)
-|..+ -|+|+|.|.-.++++|.|-+=...
T Consensus 190 vpVivdAGIgt~sDa~~AmElGaDgVL~nS 219 (267)
T CHL00162 190 IPVIIDAGIGTPSEASQAMELGASGVLLNT 219 (267)
T ss_pred CcEEEeCCcCCHHHHHHHHHcCCCEEeecc
Confidence 56665 599999999999999999654443
No 216
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=43.14 E-value=1.1e+02 Score=28.67 Aligned_cols=76 Identities=21% Similarity=0.199 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeCCC-----------CCCCCHHHHHHHHHHhhcCCCCCCCeEec---CCCChHHHHHH
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVGGL-----------SGGEAKEDFWYSVLVSINCLPKDKPRYVM---GIGFAVDLLIC 102 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIgGl-----------~~ge~~~e~~~ii~~~~~~LP~dkPr~l~---Gvg~P~~Il~~ 102 (319)
...+...+-++.|.+.+++-.-+|.. ...++.. +.+..+.+..|..| ...+ +.+.+.++-.+
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~---e~i~~~~~~~~~~~-~~~~~~~~~~~~~~i~~a 94 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDE---EYLEAAAEALKQAK-LGVLLLPGIGTVDDLKMA 94 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChH---HHHHHHHHhccCCE-EEEEecCCccCHHHHHHH
Confidence 67788888999999999998878722 1223333 34444445555333 2223 68889999999
Q ss_pred HHcCCcEeecCCcc
Q psy14115 103 CALGADMFDCVFPT 116 (319)
Q Consensus 103 V~lGvD~FD~~~Pt 116 (319)
...|+|++-...+.
T Consensus 95 ~~~g~~~iri~~~~ 108 (263)
T cd07943 95 ADLGVDVVRVATHC 108 (263)
T ss_pred HHcCCCEEEEEech
Confidence 99999987555444
No 217
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=43.12 E-value=84 Score=32.57 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=49.6
Q ss_pred CCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCC--------CCCCHHHHHHHHHHhhcCCCCCCCeEe-cC---C
Q psy14115 26 TQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLS--------GGEAKEDFWYSVLVSINCLPKDKPRYV-MG---I 93 (319)
Q Consensus 26 ~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~--------~ge~~~e~~~ii~~~~~~LP~dkPr~l-~G---v 93 (319)
.|++++.- ...+--...++.+.+.++.-+-++|=+ ..|++. +-+...++.+|..+-..+ -| +
T Consensus 24 ~QSl~atr---~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpw---erlr~~r~~~~nt~lqmLlRG~n~v 97 (468)
T PRK12581 24 HQSLMATR---LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPW---ERLRTLKKGLPNTRLQMLLRGQNLL 97 (468)
T ss_pred hhhccccC---CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHH---HHHHHHHHhCCCCceeeeecccccc
Confidence 57877662 444555567788888888777775432 234554 444455555664333332 25 5
Q ss_pred C---ChHH-----HHHHHHcCCcEeec
Q psy14115 94 G---FAVD-----LLICCALGADMFDC 112 (319)
Q Consensus 94 g---~P~~-----Il~~V~lGvD~FD~ 112 (319)
| +|.| +-.+++.|||+|=+
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Ri 124 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRI 124 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEE
Confidence 5 4668 66689999998733
No 218
>PRK15492 triosephosphate isomerase; Provisional
Probab=42.67 E-value=1.2e+02 Score=28.87 Aligned_cols=65 Identities=15% Similarity=0.365 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCceeeeccCC-CCHHHHHHHHHHH-HhCCCceEEeCCCCCCCCHHHHHHHHHHhh
Q psy14115 8 DRTVRWLDRCLAAHRNPTTQNIFPIVQGG-LDEALRKDCAHQM-VEKDVNGFAVGGLSGGEAKEDFWYSVLVSI 79 (319)
Q Consensus 8 ~RT~rWl~r~~~~~~~~~~q~lfgiVqGG-~~~dlR~~s~~~l-~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~ 79 (319)
+.++..+++.+...-...... ..|+.|| ..++ -++++ ...+++|+.|||.|. +.++|.++++...
T Consensus 192 ~~~~~~Ir~~l~~~~~~~~~~-irILYGGSV~~~----N~~~l~~~~diDG~LvG~aSl--~~~~F~~Ii~~~~ 258 (260)
T PRK15492 192 DEKHAVIKQCLIELFGDAGDD-IPVFYGGSVNAE----NANELFGQPHIDGLFIGRSAW--DADKFFAIIEGIL 258 (260)
T ss_pred HHHHHHHHHHHHHHhccccCc-eeEEEcCccCHH----HHHHHhcCCCCCEEEeehhhc--CHHHHHHHHHHHh
Confidence 344555555543221111122 3456665 5543 33444 456899999999875 6788999987654
No 219
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=42.56 E-value=1.2e+02 Score=29.41 Aligned_cols=82 Identities=10% Similarity=-0.029 Sum_probs=51.1
Q ss_pred ceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCC-------------------HHHHHHHHHHhhcCCCCCCCe
Q psy14115 28 NIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEA-------------------KEDFWYSVLVSINCLPKDKPR 88 (319)
Q Consensus 28 ~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~-------------------~~e~~~ii~~~~~~LP~dkPr 88 (319)
.++.=+-++. .+ -...++.+.+.+++|+.+.+-..+.. +...++.+..+...+ +.|.
T Consensus 167 PV~vKl~p~~-~~-~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~--~ipI 242 (334)
T PRK07565 167 PVAVKLSPYF-SN-LANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV--GADL 242 (334)
T ss_pred cEEEEeCCCc-hh-HHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc--CCCE
Confidence 4554444432 12 34556667778999998755322111 112345555555554 4677
Q ss_pred Eec-CCCChHHHHHHHHcCCcEeecC
Q psy14115 89 YVM-GIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 89 ~l~-Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
.-. |+-++.|+..++.+|+|++-..
T Consensus 243 ig~GGI~s~~Da~e~l~aGA~~V~v~ 268 (334)
T PRK07565 243 AATTGVHDAEDVIKMLLAGADVVMIA 268 (334)
T ss_pred EEECCCCCHHHHHHHHHcCCCceeee
Confidence 765 5889999999999999987665
No 220
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=42.46 E-value=90 Score=28.09 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=46.3
Q ss_pred HHHHHHHhCCCceEEeCCCCCCCC-HHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEe
Q psy14115 44 DCAHQMVEKDVNGFAVGGLSGGEA-KEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMF 110 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl~~ge~-~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~F 110 (319)
+-++.+.+.+++.+-|-+++.... .....+++..+.+.. +.|..+- |+-+|+++..+++.|+|.+
T Consensus 33 ~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~v 99 (234)
T cd04732 33 EVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRV 99 (234)
T ss_pred HHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEE
Confidence 456667778888888887754422 333455666666655 3677764 6799999999999999975
No 221
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=42.28 E-value=1.2e+02 Score=28.91 Aligned_cols=65 Identities=14% Similarity=0.077 Sum_probs=42.2
Q ss_pred HHHHHhCC-CceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCC
Q psy14115 46 AHQMVEKD-VNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVF 114 (319)
Q Consensus 46 ~~~l~~~~-~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~ 114 (319)
++....++ .+|..+.|.+.|.+.+ ++.+..+++..| +.|.++-|==+|.++-.++.. .|-+|...
T Consensus 163 a~~~~~~~~aDavivtG~~TG~~~d--~~~l~~vr~~~~-~~PvllggGvt~eNv~e~l~~-adGviVgS 228 (257)
T TIGR00259 163 ALDTVERGLADAVILSGKTTGTEVD--LELLKLAKETVK-DTPVLAGSGVNLENVEELLSI-ADGVIVAT 228 (257)
T ss_pred HHHHHHhcCCCEEEECcCCCCCCCC--HHHHHHHHhccC-CCeEEEECCCCHHHHHHHHhh-CCEEEECC
Confidence 34444455 8999999998886533 233334443333 568766444589999999886 77777643
No 222
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=41.93 E-value=2.1e+02 Score=29.88 Aligned_cols=85 Identities=15% Similarity=0.059 Sum_probs=61.1
Q ss_pred ceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCC
Q psy14115 28 NIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGA 107 (319)
Q Consensus 28 ~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGv 107 (319)
.+||=|......+-=.+-++++.+.|.+-.-||+-+.....+.+..+|+.+.+.. +.| ...-.-+|..+-.+++.|+
T Consensus 153 ~v~aEI~~a~~l~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~--~~p-ISIDT~~~~v~eaAL~aGA 229 (499)
T TIGR00284 153 RVVAEIPPTVAEDGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDAL--DSP-VIADTPTLDELYEALKAGA 229 (499)
T ss_pred EEEEEEcCCcchHHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhC--CCc-EEEeCCCHHHHHHHHHcCC
Confidence 4677665544434334456777788999999999876555666888888877643 344 3445678999999999999
Q ss_pred cEeecCCc
Q psy14115 108 DMFDCVFP 115 (319)
Q Consensus 108 D~FD~~~P 115 (319)
||+-++..
T Consensus 230 diINsVs~ 237 (499)
T TIGR00284 230 SGVIMPDV 237 (499)
T ss_pred CEEEECCc
Confidence 99877644
No 223
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=41.92 E-value=59 Score=31.62 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=40.4
Q ss_pred HHHHHHhCCCceEEeCCCCCCC----CHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEe
Q psy14115 45 CAHQMVEKDVNGFAVGGLSGGE----AKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMF 110 (319)
Q Consensus 45 s~~~l~~~~~~G~aIgGl~~ge----~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~F 110 (319)
.++.+.+.++|++++-|...|- +......++..+.+.++ .|...- |++++.+|..+.++|.|-+
T Consensus 148 ~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~--iPViaAGGI~dg~~iaaal~lGA~gV 216 (330)
T PF03060_consen 148 EARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVD--IPVIAAGGIADGRGIAAALALGADGV 216 (330)
T ss_dssp HHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-S--S-EEEESS--SHHHHHHHHHCT-SEE
T ss_pred HHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcC--CcEEEecCcCCHHHHHHHHHcCCCEe
Confidence 3455667899999987764331 11236666667776665 778776 6899999999999999965
No 224
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.75 E-value=1.6e+02 Score=28.48 Aligned_cols=63 Identities=13% Similarity=0.040 Sum_probs=46.3
Q ss_pred hCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCcC
Q psy14115 51 EKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARF 121 (319)
Q Consensus 51 ~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~ 121 (319)
+.+++...+..+ +++++.+.+..+ +.....-..|==++.+|..-...|||.+.+..+|..++.
T Consensus 211 ~~gaDiImLDn~----s~e~l~~av~~~----~~~~~leaSGgI~~~ni~~yA~tGVD~Is~galths~~~ 273 (281)
T PRK06543 211 AAGVDTIMLDNF----SLDDLREGVELV----DGRAIVEASGNVNLNTVGAIASTGVDVISVGALTHSVRA 273 (281)
T ss_pred hcCCCEEEECCC----CHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccCCcc
Confidence 456777777775 567777777754 322333345655899999999999999999999988764
No 225
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=41.67 E-value=1e+02 Score=28.10 Aligned_cols=68 Identities=19% Similarity=0.110 Sum_probs=47.9
Q ss_pred HHHHHHHhCCCceEEeCCCCC-CCCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEeecC
Q psy14115 44 DCAHQMVEKDVNGFAVGGLSG-GEAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl~~-ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
+-++.+.+.+++.+.+-.++. ++....-.+++..+.+.++ .|..+- |+.+++++..+++.|+|.+...
T Consensus 31 ~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~--~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 31 ELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVF--IPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred HHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCC--CCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 455666677888888777763 3333444566666666553 677765 6899999999999999987544
No 226
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=41.53 E-value=85 Score=29.02 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=43.8
Q ss_pred HHHHHHHHhCCCceEEeCCCCC-CCCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHc-CCcEe
Q psy14115 43 KDCAHQMVEKDVNGFAVGGLSG-GEAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCAL-GADMF 110 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgGl~~-ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~l-GvD~F 110 (319)
.+-++++.+.+++.+.+-++.. |....--++.+..+.+.. +.|.+.. |+.+++++..+... |+|-.
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~~G~~gv 224 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTEGGADAA 224 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhCCccEE
Confidence 4455777788999998865432 211111145566666555 3788876 58999999999975 99854
No 227
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=41.30 E-value=1e+02 Score=30.67 Aligned_cols=56 Identities=14% Similarity=0.342 Sum_probs=40.2
Q ss_pred eeccCC-CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEec
Q psy14115 31 PIVQGG-LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVM 91 (319)
Q Consensus 31 giVqGG-~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~ 91 (319)
.|+-|| ..++ .+.+-+...+++|+.+||.+. +.++|.++++...+.+...|--.+|
T Consensus 215 ~ILYGGSV~~~---N~~~l~~~~~iDG~LVG~asl--~~~~f~~Ii~~~~~~~~~~~~~~~~ 271 (355)
T PRK14905 215 PVLYGGSVNLE---NANELIMKPHIDGLFIGRSAW--DAQCFHALIADALKALAGSKIDPII 271 (355)
T ss_pred eEEEeCcCCHH---HHHHHhcCCCCCEEEechhhc--cHHHHHHHHHHHHHhccCCcccHHH
Confidence 455555 5543 334445567899999999876 7889999999988888777654443
No 228
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=41.15 E-value=2.1e+02 Score=29.17 Aligned_cols=64 Identities=22% Similarity=0.223 Sum_probs=38.0
Q ss_pred HHHHHHhCCCceEEeC-CCC----------CCCCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEe
Q psy14115 45 CAHQMVEKDVNGFAVG-GLS----------GGEAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMF 110 (319)
Q Consensus 45 s~~~l~~~~~~G~aIg-Gl~----------~ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~F 110 (319)
.++.+.+.+++++.+| |.. .|.+.-.....+....+. .+.|...- |+.+|.+|..++++|.|.+
T Consensus 207 ~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~--~~vpVIAdGGI~~~~Di~KALalGA~aV 282 (404)
T PRK06843 207 AALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKN--TNICIIADGGIRFSGDVVKAIAAGADSV 282 (404)
T ss_pred HHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhh--cCCeEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 4556667899998875 211 111211111112222221 24677776 5899999999999999964
No 229
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=41.11 E-value=81 Score=32.14 Aligned_cols=85 Identities=20% Similarity=0.271 Sum_probs=45.6
Q ss_pred HHHHHHhCCCceEEeC-CCCC-CCCHH------HHHHHHHHhhcCC-CCCCCeEec-CCCChHHHHHHHHcCCcEe--ec
Q psy14115 45 CAHQMVEKDVNGFAVG-GLSG-GEAKE------DFWYSVLVSINCL-PKDKPRYVM-GIGFAVDLLICCALGADMF--DC 112 (319)
Q Consensus 45 s~~~l~~~~~~G~aIg-Gl~~-ge~~~------e~~~ii~~~~~~L-P~dkPr~l~-Gvg~P~~Il~~V~lGvD~F--D~ 112 (319)
-++.+.+.+++++-+| |.+. ..+.. -....+..+.+.. ..+.|.+.- |+-+|.||..|+++|+|.+ -+
T Consensus 278 ~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~ 357 (450)
T TIGR01302 278 QAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGS 357 (450)
T ss_pred HHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 4556677899998875 3210 01110 0112222222221 124565554 6999999999999999964 33
Q ss_pred CCccccCcCCcceeccc
Q psy14115 113 VFPTRTARFGSALVRQG 129 (319)
Q Consensus 113 ~~Ptr~Ar~G~alt~~G 129 (319)
.+....---|..+..+|
T Consensus 358 ~~a~~~e~pg~~~~~~g 374 (450)
T TIGR01302 358 LLAGTTESPGEYEIING 374 (450)
T ss_pred hhhcCCcCCCceEEECC
Confidence 44333333355554443
No 230
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=41.09 E-value=81 Score=30.73 Aligned_cols=66 Identities=21% Similarity=0.228 Sum_probs=39.5
Q ss_pred HHHHHHhCCCceEEeCCCCCC--CCHH------HHHHHHHHhhcCCCC-CCCeEec-CCCChHHHHHHHHcCCcEe
Q psy14115 45 CAHQMVEKDVNGFAVGGLSGG--EAKE------DFWYSVLVSINCLPK-DKPRYVM-GIGFAVDLLICCALGADMF 110 (319)
Q Consensus 45 s~~~l~~~~~~G~aIgGl~~g--e~~~------e~~~ii~~~~~~LP~-dkPr~l~-Gvg~P~~Il~~V~lGvD~F 110 (319)
-++.+.+.+++++.+|+-++. .... -.+..|..+.+..+. +.|...- |+.+|.+|..+.++|.|.+
T Consensus 148 ~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~V 223 (325)
T cd00381 148 AARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAV 223 (325)
T ss_pred HHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEE
Confidence 356667789999988532110 0010 022333333333332 4666554 6899999999999999964
No 231
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=40.92 E-value=1.2e+02 Score=30.06 Aligned_cols=80 Identities=14% Similarity=0.196 Sum_probs=48.7
Q ss_pred ceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCC--------CC-CHHHHHHHHHHhhcCCCCCCCeEec--CCC-C
Q psy14115 28 NIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSG--------GE-AKEDFWYSVLVSINCLPKDKPRYVM--GIG-F 95 (319)
Q Consensus 28 ~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~--------ge-~~~e~~~ii~~~~~~LP~dkPr~l~--Gvg-~ 95 (319)
++|++.-.|.+++.-.+.++.+ +.+...|+ +.. +. +.+.+.+.|+.+++.+ +.|..+= |.| +
T Consensus 126 Nl~~~~~~~~~~~~~~~~~~~~---~adal~l~-l~~~qe~~~p~g~~~f~~~le~i~~i~~~~--~vPVivK~~g~g~s 199 (352)
T PRK05437 126 NLGAVQLYGYGVEEAQRAVEMI---EADALQIH-LNPLQELVQPEGDRDFRGWLDNIAEIVSAL--PVPVIVKEVGFGIS 199 (352)
T ss_pred ecCccccCCCCHHHHHHHHHhc---CCCcEEEe-CccchhhcCCCCcccHHHHHHHHHHHHHhh--CCCEEEEeCCCCCc
Confidence 3444433356666655555554 45566654 211 11 2223447888888777 4788874 433 5
Q ss_pred hHHHHHHHHcCCcEeecC
Q psy14115 96 AVDLLICCALGADMFDCV 113 (319)
Q Consensus 96 P~~Il~~V~lGvD~FD~~ 113 (319)
+.+...+...|+|.+|..
T Consensus 200 ~~~a~~l~~~Gvd~I~Vs 217 (352)
T PRK05437 200 KETAKRLADAGVKAIDVA 217 (352)
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 677778889999999874
No 232
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=40.74 E-value=2.3e+02 Score=24.09 Aligned_cols=64 Identities=23% Similarity=0.123 Sum_probs=42.1
Q ss_pred HHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCC------ChHHHHHHHHcCCc-EeecC
Q psy14115 49 MVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIG------FAVDLLICCALGAD-MFDCV 113 (319)
Q Consensus 49 l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg------~P~~Il~~V~lGvD-~FD~~ 113 (319)
..+.+.+-.++..+.. .....+.++++.+.+..|++.+.++=|.. .+.+...+-++|+| +|+..
T Consensus 50 a~~~~~d~V~lS~~~~-~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~ 120 (137)
T PRK02261 50 AIETDADAILVSSLYG-HGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPG 120 (137)
T ss_pred HHHcCCCEEEEcCccc-cCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcC
Confidence 3456788888876544 45667788888888886666554554432 23445688899987 56643
No 233
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=40.66 E-value=1.3e+02 Score=29.42 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=47.1
Q ss_pred HHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCcC
Q psy14115 48 QMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARF 121 (319)
Q Consensus 48 ~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~ 121 (319)
+..+.+.+...+..+ +++++.+++... +.+...-..|==++.+|..-.+.|||.+...++|..++.
T Consensus 223 ea~~~gaDiI~LDn~----s~e~~~~av~~~----~~~~~ieaSGGI~~~ni~~yA~tGVD~Is~galthsa~~ 288 (296)
T PRK09016 223 QALKAGADIIMLDNF----TTEQMREAVKRT----NGRALLEVSGNVTLETLREFAETGVDFISVGALTKHVQA 288 (296)
T ss_pred HHHHcCCCEEEeCCC----ChHHHHHHHHhh----cCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccCCCc
Confidence 334567888888876 457777777753 222222334544899999999999999999999988754
No 234
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=40.54 E-value=1.2e+02 Score=26.76 Aligned_cols=63 Identities=16% Similarity=0.051 Sum_probs=41.0
Q ss_pred HHHhCCCceEEeCCCCCCCCHHH----H-HHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEee
Q psy14115 48 QMVEKDVNGFAVGGLSGGEAKED----F-WYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFD 111 (319)
Q Consensus 48 ~l~~~~~~G~aIgGl~~ge~~~e----~-~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD 111 (319)
+..+.+++...+|.+..+.++.. . ++.+..+.+.++ +.|.++.|==++.++..+.+.|+|.+=
T Consensus 119 ~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~v~a~GGI~~~~i~~~~~~Ga~gv~ 186 (212)
T PRK00043 119 AALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVG-DIPIVAIGGITPENAPEVLEAGADGVA 186 (212)
T ss_pred HHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCcCHHHHHHHHHcCCCEEE
Confidence 33456788888876543332211 1 444555555553 478888863389999999999999874
No 235
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=40.51 E-value=1.5e+02 Score=28.71 Aligned_cols=68 Identities=13% Similarity=0.005 Sum_probs=44.7
Q ss_pred HHHHHHHhCCCceEEeCCCCCCCC-------------------HHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHH
Q psy14115 44 DCAHQMVEKDVNGFAVGGLSGGEA-------------------KEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICC 103 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl~~ge~-------------------~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V 103 (319)
.-++.+.+.+++|+.+.+-..+.. +..-++.+..+...+ +.|.... |+-++.|+...+
T Consensus 179 ~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~--~ipIig~GGI~s~~Da~e~l 256 (325)
T cd04739 179 HMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV--KASLAASGGVHDAEDVVKYL 256 (325)
T ss_pred HHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc--CCCEEEECCCCCHHHHHHHH
Confidence 344556667888888766421111 112245556665544 5777766 588999999999
Q ss_pred HcCCcEeecC
Q psy14115 104 ALGADMFDCV 113 (319)
Q Consensus 104 ~lGvD~FD~~ 113 (319)
.+|+|.+-..
T Consensus 257 ~aGA~~Vqv~ 266 (325)
T cd04739 257 LAGADVVMTT 266 (325)
T ss_pred HcCCCeeEEe
Confidence 9999987654
No 236
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.43 E-value=1.6e+02 Score=28.55 Aligned_cols=63 Identities=10% Similarity=-0.018 Sum_probs=46.0
Q ss_pred HhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCc
Q psy14115 50 VEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTAR 120 (319)
Q Consensus 50 ~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar 120 (319)
.+.+++...+..+ +++++.+.++.+ +.....-..|==++.++..-...|||.+.+.++|..|+
T Consensus 214 ~~agaDiImLDnm----spe~l~~av~~~----~~~~~leaSGGI~~~ni~~yA~tGVD~Is~galthsa~ 276 (290)
T PRK06559 214 AAAGADIIMLDNM----SLEQIEQAITLI----AGRSRIECSGNIDMTTISRFRGLAIDYVSSGSLTHSAK 276 (290)
T ss_pred HHcCCCEEEECCC----CHHHHHHHHHHh----cCceEEEEECCCCHHHHHHHHhcCCCEEEeCccccCCc
Confidence 3467788887775 577787777643 32222334555589999999999999999999998664
No 237
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=40.38 E-value=3.4e+02 Score=27.90 Aligned_cols=99 Identities=17% Similarity=0.196 Sum_probs=64.3
Q ss_pred HHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEE---------eCCCCCCCCHHHHHHHHHHhhcCCCC
Q psy14115 14 LDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFA---------VGGLSGGEAKEDFWYSVLVSINCLPK 84 (319)
Q Consensus 14 l~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~a---------IgGl~~ge~~~e~~~ii~~~~~~LP~ 84 (319)
+...++.|+......+++| ++.++..-+.+++.-.+.+.+-.. .||- .|+++.+|.+.|..+.+.+-.
T Consensus 4 l~~~~~~~k~g~~~gI~sV--Csahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GGY-TGmtP~dF~~~V~~iA~~~gf 80 (426)
T PRK15458 4 LTEMVQQHKAGKTNGIYAV--CSAHPLVLEAAIRYALANDSPLLIEATSNQVDQFGGY-TGMTPADFRGFVCQLADSLNF 80 (426)
T ss_pred HHHHHHhhccCCCceEEEe--cCCCHHHHHHHHHHHhhcCCcEEEEeccccccccCCc-CCCCHHHHHHHHHHHHHHcCC
Confidence 4566666765444455554 356766555556665554433222 2676 789999999999998887765
Q ss_pred CCCeEecCC--CCh----------------HHHHHHHHcCCcE--eecCCc
Q psy14115 85 DKPRYVMGI--GFA----------------VDLLICCALGADM--FDCVFP 115 (319)
Q Consensus 85 dkPr~l~Gv--g~P----------------~~Il~~V~lGvD~--FD~~~P 115 (319)
+.-++++|- +.| .-|...|+.|.+. .||+..
T Consensus 81 ~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ 131 (426)
T PRK15458 81 PQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGFKKIHLDCSMS 131 (426)
T ss_pred ChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCceEEecCCCC
Confidence 554677764 446 2255778999996 587765
No 238
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=40.24 E-value=1.8e+02 Score=28.35 Aligned_cols=80 Identities=15% Similarity=0.222 Sum_probs=49.1
Q ss_pred ceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCC--------CC-CHHHHHHHHHHhhcCCCCCCCeEec--CCC-C
Q psy14115 28 NIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSG--------GE-AKEDFWYSVLVSINCLPKDKPRYVM--GIG-F 95 (319)
Q Consensus 28 ~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~--------ge-~~~e~~~ii~~~~~~LP~dkPr~l~--Gvg-~ 95 (319)
+++++...|...+.-.+.++.+ +.++..|+ +.. +. +.+.+.+.|+.+++.+ +.|..+= |.| +
T Consensus 118 Nl~~~~~~~~~~~~~~~~i~~~---~adalel~-l~~~q~~~~~~~~~df~~~~~~i~~l~~~~--~vPVivK~~g~g~s 191 (326)
T cd02811 118 NLGAVQLNGYGVEEARRAVEMI---EADALAIH-LNPLQEAVQPEGDRDFRGWLERIEELVKAL--SVPVIVKEVGFGIS 191 (326)
T ss_pred ecCccccCCCCHHHHHHHHHhc---CCCcEEEe-CcchHhhcCCCCCcCHHHHHHHHHHHHHhc--CCCEEEEecCCCCC
Confidence 3555444456666666665554 45666664 211 11 2223447777777766 4788873 554 5
Q ss_pred hHHHHHHHHcCCcEeecC
Q psy14115 96 AVDLLICCALGADMFDCV 113 (319)
Q Consensus 96 P~~Il~~V~lGvD~FD~~ 113 (319)
+.+...+...|+|.+|..
T Consensus 192 ~~~a~~l~~~Gvd~I~vs 209 (326)
T cd02811 192 RETAKRLADAGVKAIDVA 209 (326)
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 777888899999999964
No 239
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=39.97 E-value=1e+02 Score=29.41 Aligned_cols=77 Identities=18% Similarity=0.172 Sum_probs=45.9
Q ss_pred eeeeccCCCCHHHHHHHHHHHHhCCCceEEeC--CCCCCC--CHHHHHHHHHHhhcCCCCCCCeEe-cCCCChHHHHHHH
Q psy14115 29 IFPIVQGGLDEALRKDCAHQMVEKDVNGFAVG--GLSGGE--AKEDFWYSVLVSINCLPKDKPRYV-MGIGFAVDLLICC 103 (319)
Q Consensus 29 lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIg--Gl~~ge--~~~e~~~ii~~~~~~LP~dkPr~l-~Gvg~P~~Il~~V 103 (319)
+...|.. .-++.|.+.+.+.. .+| -|.++ |..+.. -.+++.+.++.+.+.. ++|..+ +|+.+|+++-...
T Consensus 143 ~I~lv~p-~t~~~Ri~~i~~~a-~gF-iY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~ 217 (259)
T PF00290_consen 143 LIPLVAP-TTPEERIKKIAKQA-SGF-IYLVSRMGVTGSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLA 217 (259)
T ss_dssp EEEEEET-TS-HHHHHHHHHH--SSE-EEEESSSSSSSTTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHH
T ss_pred EEEEECC-CCCHHHHHHHHHhC-CcE-EEeeccCCCCCCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHH
Confidence 3334443 33455655554433 233 33343 332221 2467888888888877 799998 8999999998877
Q ss_pred HcCCcEee
Q psy14115 104 ALGADMFD 111 (319)
Q Consensus 104 ~lGvD~FD 111 (319)
.|+|-+-
T Consensus 218 -~~aDGvI 224 (259)
T PF00290_consen 218 -AGADGVI 224 (259)
T ss_dssp -TTSSEEE
T ss_pred -ccCCEEE
Confidence 9999654
No 240
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.94 E-value=29 Score=32.31 Aligned_cols=45 Identities=22% Similarity=0.481 Sum_probs=32.7
Q ss_pred CCeEecCCCChHHHHHHHHcCCcEeecCCccccCcCCcc-------------eeccceEEc
Q psy14115 86 KPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSA-------------LVRQGQLQL 133 (319)
Q Consensus 86 kPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~G~a-------------lt~~G~i~L 133 (319)
.--+++|+.||.+|..+.++|.|++= .||... .|.. |.+.|.+++
T Consensus 112 ~i~~iPG~~TpsEi~~A~~~Ga~~vK-lFPA~~--~G~~~ikal~~p~p~i~~~ptGGV~~ 169 (222)
T PRK07114 112 KVPYSPGCGSLSEIGYAEELGCEIVK-LFPGSV--YGPGFVKAIKGPMPWTKIMPTGGVEP 169 (222)
T ss_pred CCCEeCCCCCHHHHHHHHHCCCCEEE-ECcccc--cCHHHHHHHhccCCCCeEEeCCCCCc
Confidence 34578999999999999999999853 456442 2333 445688877
No 241
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=39.73 E-value=1.6e+02 Score=28.72 Aligned_cols=83 Identities=19% Similarity=0.153 Sum_probs=61.6
Q ss_pred ceeeeccCCCCHHHHHHHHHHHHhCCCceEEeC-------------CCCCCCCHHHHHHHHHHhhcCCCCCCCeEe---c
Q psy14115 28 NIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVG-------------GLSGGEAKEDFWYSVLVSINCLPKDKPRYV---M 91 (319)
Q Consensus 28 ~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIg-------------Gl~~ge~~~e~~~ii~~~~~~LP~dkPr~l---~ 91 (319)
..+++..+|-+|+.-.++++.+.+.+++++=|- |-..-.+++.+.++|+.+.+.++ +.|.-+ .
T Consensus 67 ~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~-~iPVTVKiRl 145 (323)
T COG0042 67 RPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG-DIPVTVKIRL 145 (323)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC-CCCeEEEEec
Confidence 347888899999999999999999887765531 22334688999999999999998 777665 5
Q ss_pred CCCChH----HHHHHH-HcCCcEee
Q psy14115 92 GIGFAV----DLLICC-ALGADMFD 111 (319)
Q Consensus 92 Gvg~P~----~Il~~V-~lGvD~FD 111 (319)
|.-.+. ++...+ +.|+|.+-
T Consensus 146 G~d~~~~~~~~ia~~~~~~g~~~lt 170 (323)
T COG0042 146 GWDDDDILALEIARILEDAGADALT 170 (323)
T ss_pred ccCcccccHHHHHHHHHhcCCCEEE
Confidence 664443 566555 57799874
No 242
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.64 E-value=3.3e+02 Score=25.78 Aligned_cols=71 Identities=20% Similarity=0.115 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeC--CCCCC--CCHHHHHHHHHHhhcCCCCCCCeEe-cCCCChHHHHHHHHcCCcEee
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVG--GLSGG--EAKEDFWYSVLVSINCLPKDKPRYV-MGIGFAVDLLICCALGADMFD 111 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIg--Gl~~g--e~~~e~~~ii~~~~~~LP~dkPr~l-~Gvg~P~~Il~~V~lGvD~FD 111 (319)
..++.|.+.+..+. .+| -|.++ |..+. ....+..+.++.+.+.. +.|..+ +|+-+|+++..+... +|.+-
T Consensus 152 ~t~~eri~~i~~~s-~gf-IY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~~~~-ADGvi 226 (258)
T PRK13111 152 TTTDERLKKIASHA-SGF-VYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQAAAIAAV-ADGVI 226 (258)
T ss_pred CCCHHHHHHHHHhC-CCc-EEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHHHHHh-CCEEE
Confidence 44566777666653 233 22222 22111 12345666777777644 588887 678899999998875 88654
Q ss_pred c
Q psy14115 112 C 112 (319)
Q Consensus 112 ~ 112 (319)
+
T Consensus 227 V 227 (258)
T PRK13111 227 V 227 (258)
T ss_pred E
Confidence 3
No 243
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.56 E-value=1.8e+02 Score=28.34 Aligned_cols=65 Identities=12% Similarity=0.004 Sum_probs=47.3
Q ss_pred HHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCcC
Q psy14115 49 MVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARF 121 (319)
Q Consensus 49 l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~ 121 (319)
..+.+++...+..+ +++++.+.+..+ +.....-..|==++.+|..-...|||.+...++|..++.
T Consensus 221 A~~aGaDiImLDnm----spe~l~~av~~~----~~~~~lEaSGGIt~~ni~~yA~tGVD~IS~galthsa~~ 285 (294)
T PRK06978 221 ALAHGAQSVLLDNF----TLDMMREAVRVT----AGRAVLEVSGGVNFDTVRAFAETGVDRISIGALTKDVRA 285 (294)
T ss_pred HHHcCCCEEEECCC----CHHHHHHHHHhh----cCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccCCcc
Confidence 34567888888875 567777777654 322222334555899999999999999999999988754
No 244
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=39.53 E-value=2e+02 Score=26.99 Aligned_cols=85 Identities=14% Similarity=0.161 Sum_probs=61.4
Q ss_pred CceeeeccCCC-CHHHHHHHHHHHHhCCCceEEeCCC-------------------CCCCCHHHHHHHHHHhhcCCCCCC
Q psy14115 27 QNIFPIVQGGL-DEALRKDCAHQMVEKDVNGFAVGGL-------------------SGGEAKEDFWYSVLVSINCLPKDK 86 (319)
Q Consensus 27 q~lfgiVqGG~-~~dlR~~s~~~l~~~~~~G~aIgGl-------------------~~ge~~~e~~~ii~~~~~~LP~dk 86 (319)
..+.+-+.-|. +.+.=.+.++.+.+.+++-+-||=. ..|.+.++..++++.+++.-+ +.
T Consensus 10 ~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~-~~ 88 (256)
T TIGR00262 10 GAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHP-NI 88 (256)
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CC
Confidence 45666666554 4444567788899999998888863 345566777888888876532 57
Q ss_pred CeEecCCCCh------HH-HHHHHHcCCcEeec
Q psy14115 87 PRYVMGIGFA------VD-LLICCALGADMFDC 112 (319)
Q Consensus 87 Pr~l~Gvg~P------~~-Il~~V~lGvD~FD~ 112 (319)
|..+|+.-+| +. +-.+.+.|+|.+-.
T Consensus 89 plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgvii 121 (256)
T TIGR00262 89 PIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLV 121 (256)
T ss_pred CEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEE
Confidence 8889999888 55 66888999997543
No 245
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=39.44 E-value=79 Score=32.80 Aligned_cols=62 Identities=24% Similarity=0.376 Sum_probs=36.9
Q ss_pred HHHHHHhCCCceEEeC-CCC----------CCCCHHHHHHHHHHhhcCCCC-CCCeEec--CCCChHHHHHHHHcCCcEe
Q psy14115 45 CAHQMVEKDVNGFAVG-GLS----------GGEAKEDFWYSVLVSINCLPK-DKPRYVM--GIGFAVDLLICCALGADMF 110 (319)
Q Consensus 45 s~~~l~~~~~~G~aIg-Gl~----------~ge~~~e~~~ii~~~~~~LP~-dkPr~l~--Gvg~P~~Il~~V~lGvD~F 110 (319)
-++.+.+.+++++.+| |.+ .|-+. + ..+..+.+..-. +.| .+. |+.+|.||..|+++|+|.+
T Consensus 295 ~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~--~-~ai~~~~~~~~~~~v~-vIadGGi~~~~di~kAla~GA~~V 370 (495)
T PTZ00314 295 QAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQ--A-SAVYHVARYARERGVP-CIADGGIKNSGDICKALALGADCV 370 (495)
T ss_pred HHHHHHHcCCCEEEECCcCCcccccchhccCCCCh--H-HHHHHHHHHHhhcCCe-EEecCCCCCHHHHHHHHHcCCCEE
Confidence 4556778899999875 211 11121 1 122222222211 244 445 8999999999999999965
No 246
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=39.39 E-value=3.3e+02 Score=27.93 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=65.3
Q ss_pred HHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEE---------eCCCCCCCCHHHHHHHHHHhhcCCCCCCCe
Q psy14115 18 LAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFA---------VGGLSGGEAKEDFWYSVLVSINCLPKDKPR 88 (319)
Q Consensus 18 ~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~a---------IgGl~~ge~~~e~~~ii~~~~~~LP~dkPr 88 (319)
++.|+......+++| ++.++..-+.+++.-.+.+.+-.. .||- .|+++.+|.+.|..+.+.+-.++-|
T Consensus 4 ~~~~~~g~~~gI~sV--Csahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GGY-TGmtP~dF~~~V~~iA~~~gf~~~~ 80 (420)
T TIGR02810 4 ARRHKAGEPRGIYSV--CSAHPLVLEAAIRRARASGTPVLIEATSNQVNQFGGY-TGMTPADFRDFVETIADRIGFPRDR 80 (420)
T ss_pred hhhhhcCCCCeEEEE--CCCCHHHHHHHHHHHhhcCCcEEEEeccccccccCCc-CCCCHHHHHHHHHHHHHHcCCChhc
Confidence 344544333445544 356666555556665554433222 2666 7899999999999988877655546
Q ss_pred EecCC--CCh----------------HHHHHHHHcCCcE--eecCCccccCcCCccee
Q psy14115 89 YVMGI--GFA----------------VDLLICCALGADM--FDCVFPTRTARFGSALV 126 (319)
Q Consensus 89 ~l~Gv--g~P----------------~~Il~~V~lGvD~--FD~~~Ptr~Ar~G~alt 126 (319)
+++|- +.| .-|...|+.|.+. .||+.. .+..+..|+
T Consensus 81 iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~--ca~d~~~L~ 136 (420)
T TIGR02810 81 LILGGDHLGPNPWQHLPADEAMAKAAALVDAYVEAGFTKIHLDASMG--CAGDPAPLD 136 (420)
T ss_pred EEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCceEEecCCCC--ccCCCccCC
Confidence 77764 445 2356778999996 588776 555555554
No 247
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.37 E-value=30 Score=31.69 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=24.3
Q ss_pred CCeEecCCCChHHHHHHHHcCCcEeecCCc
Q psy14115 86 KPRYVMGIGFAVDLLICCALGADMFDCVFP 115 (319)
Q Consensus 86 kPr~l~Gvg~P~~Il~~V~lGvD~FD~~~P 115 (319)
.--+++|+-||.+|..+.++|.|++= .||
T Consensus 97 ~i~~iPG~~TptEi~~A~~~Ga~~vK-~FP 125 (201)
T PRK06015 97 DVPLLPGAATPSEVMALREEGYTVLK-FFP 125 (201)
T ss_pred CCCEeCCCCCHHHHHHHHHCCCCEEE-ECC
Confidence 34578899999999999999999864 456
No 248
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=39.17 E-value=76 Score=29.73 Aligned_cols=56 Identities=25% Similarity=0.289 Sum_probs=40.9
Q ss_pred HHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcE
Q psy14115 45 CAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADM 109 (319)
Q Consensus 45 s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~ 109 (319)
.++.+.+.+.+.+.||| |.|-+.+.+.+++..+.+ . +.|..++ .|+|.. |.-++|-
T Consensus 24 ~~~~~~~~gtdai~vGG-S~~vt~~~~~~~v~~ik~-~--~lPvilf-p~~~~~----i~~~aDa 79 (232)
T PRK04169 24 ALEAICESGTDAIIVGG-SDGVTEENVDELVKAIKE-Y--DLPVILF-PGNIEG----ISPGADA 79 (232)
T ss_pred HHHHHHhcCCCEEEEcC-CCccchHHHHHHHHHHhc-C--CCCEEEe-CCCccc----cCcCCCE
Confidence 34677888999999999 555667888888888887 3 4888885 566644 4456773
No 249
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=39.11 E-value=1.3e+02 Score=27.72 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=58.0
Q ss_pred CceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCC---ChHHHHHHH
Q psy14115 27 QNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIG---FAVDLLICC 103 (319)
Q Consensus 27 q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg---~P~~Il~~V 103 (319)
+.+++|+-+ .+++.=.+-++.+.+-++.-+-|-=- ...-.+.|+.+.+..| ..+.|+| ++++.-.++
T Consensus 8 ~~liaVlr~-~~~e~a~~~~~al~~~Gi~~iEit~~-----t~~a~~~i~~l~~~~~----~~~vGAGTVl~~~~a~~a~ 77 (204)
T TIGR01182 8 AKIVPVIRI-DDVDDALPLAKALIEGGLRVLEVTLR-----TPVALDAIRLLRKEVP----DALIGAGTVLNPEQLRQAV 77 (204)
T ss_pred CCEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEeCC-----CccHHHHHHHHHHHCC----CCEEEEEeCCCHHHHHHHH
Confidence 569999996 78887788889999999988877642 2334455666665555 4666776 589999999
Q ss_pred HcCCcEeecCC
Q psy14115 104 ALGADMFDCVF 114 (319)
Q Consensus 104 ~lGvD~FD~~~ 114 (319)
..|.|.+-++.
T Consensus 78 ~aGA~FivsP~ 88 (204)
T TIGR01182 78 DAGAQFIVSPG 88 (204)
T ss_pred HcCCCEEECCC
Confidence 99999985543
No 250
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=38.91 E-value=42 Score=33.32 Aligned_cols=40 Identities=20% Similarity=0.024 Sum_probs=33.4
Q ss_pred HHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecC
Q psy14115 72 WYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 72 ~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
|+.|+.+++..+ .|..+-|+.+|++...++..|+|.++.+
T Consensus 210 ~~~l~~lr~~~~--~PvivKgv~~~~dA~~a~~~G~d~I~vs 249 (351)
T cd04737 210 PADIEFIAKISG--LPVIVKGIQSPEDADVAINAGADGIWVS 249 (351)
T ss_pred HHHHHHHHHHhC--CcEEEecCCCHHHHHHHHHcCCCEEEEe
Confidence 566666666653 8999999999999999999999998765
No 251
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=38.85 E-value=84 Score=30.99 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=37.8
Q ss_pred HHHHHHHhCCCceEEe--CCCCC---CC----CHHHHHHHHHHhhcCCCCCCCeEecCC-CCh-----------------
Q psy14115 44 DCAHQMVEKDVNGFAV--GGLSG---GE----AKEDFWYSVLVSINCLPKDKPRYVMGI-GFA----------------- 96 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aI--gGl~~---ge----~~~e~~~ii~~~~~~LP~dkPr~l~Gv-g~P----------------- 96 (319)
++.+.+.+.+++-+|+ |...+ +. .+.--++.++.+.+.+| +.|.-+.|- |.|
T Consensus 168 eA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~-~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~ 246 (321)
T PRK07084 168 EVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP-GFPIVLHGSSSVPQEYVKTINEYGGKLKDA 246 (321)
T ss_pred HHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC-CCCEEEeCCCCCcHHHHHHHHHhcCccccC
Confidence 4455555678887774 43322 10 23334566677766664 578888775 555
Q ss_pred -----HHHHHHHHcCC
Q psy14115 97 -----VDLLICCALGA 107 (319)
Q Consensus 97 -----~~Il~~V~lGv 107 (319)
+++..+|++||
T Consensus 247 ~Gi~~e~~~kai~~GI 262 (321)
T PRK07084 247 IGIPEEQLRKAAKSAV 262 (321)
T ss_pred CCCCHHHHHHHHHcCC
Confidence 55777777776
No 252
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=38.51 E-value=91 Score=30.85 Aligned_cols=48 Identities=23% Similarity=0.182 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHhhcCCCCCCCeEe-cCCCChHHHHHHHHcCCcEeecCCccccCc
Q psy14115 67 AKEDFWYSVLVSINCLPKDKPRYV-MGIGFAVDLLICCALGADMFDCVFPTRTAR 120 (319)
Q Consensus 67 ~~~e~~~ii~~~~~~LP~dkPr~l-~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar 120 (319)
+++-+..+++. | +-|..+ -|+|+|.|+-.++++|.|-.=.....-.|.
T Consensus 237 ~p~~i~~~~e~-----~-~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~ 285 (326)
T PRK11840 237 NPYTIRLIVEG-----A-TVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAK 285 (326)
T ss_pred CHHHHHHHHHc-----C-CCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCC
Confidence 45545555554 2 366666 699999999999999999765444443433
No 253
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=38.45 E-value=82 Score=31.41 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCceEEe--CCCCC---C--CCH--HHHHHHHHHhhcCCCCCCCeEecCC-CCh
Q psy14115 43 KDCAHQMVEKDVNGFAV--GGLSG---G--EAK--EDFWYSVLVSINCLPKDKPRYVMGI-GFA 96 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aI--gGl~~---g--e~~--~e~~~ii~~~~~~LP~dkPr~l~Gv-g~P 96 (319)
.++.+.+.+.+++-+|+ |...+ + ++. .--++.++.+.+.+| +.|.-+.|- |.|
T Consensus 174 eeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~-~vPLVLHGgSG~p 236 (347)
T TIGR01521 174 EEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLP-DTHLVMHGSSSVP 236 (347)
T ss_pred HHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCC-CCCEEEeCCCCCc
Confidence 34555555668887774 43321 2 121 123556788878774 588888876 777
No 254
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=38.42 E-value=1.9e+02 Score=27.23 Aligned_cols=75 Identities=19% Similarity=0.095 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhCCCceEEeCCCCC--C----CCHHHHHH---HHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCc
Q psy14115 38 DEALRKDCAHQMVEKDVNGFAVGGLSG--G----EAKEDFWY---SVLVSINCLPKDKPRYVMGIGFAVDLLICCALGAD 108 (319)
Q Consensus 38 ~~dlR~~s~~~l~~~~~~G~aIgGl~~--g----e~~~e~~~---ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD 108 (319)
+.+.-.+-++++.+.|.+-.=|||-+. | ...+|+.+ +|+.+.+.. +.| ...-.-+|.-+-.|++.|+|
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~--~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL--DVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC--CCc-EEEeCCCHHHHHHHHHhCCC
Confidence 445555667788889999999998654 2 22445544 455555432 455 45566889999999999999
Q ss_pred EeecCCc
Q psy14115 109 MFDCVFP 115 (319)
Q Consensus 109 ~FD~~~P 115 (319)
++-++.-
T Consensus 99 iINdisg 105 (257)
T cd00739 99 IINDVSG 105 (257)
T ss_pred EEEeCCC
Confidence 9876544
No 255
>KOG1643|consensus
Probab=37.94 E-value=25 Score=32.85 Aligned_cols=30 Identities=33% Similarity=0.546 Sum_probs=22.5
Q ss_pred HHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHH
Q psy14115 45 CAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLV 77 (319)
Q Consensus 45 s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~ 77 (319)
|.+.+.+.+++||.+||.|. +.||..+++.
T Consensus 216 ~~el~~~~diDGFLVGGaSL---KpeF~~Iin~ 245 (247)
T KOG1643|consen 216 CKELAKKPDIDGFLVGGASL---KPEFVDIINA 245 (247)
T ss_pred HHHhcccccccceEEcCccc---ChHHHHhhhc
Confidence 44555567899999999876 4678887764
No 256
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=37.79 E-value=1.3e+02 Score=25.61 Aligned_cols=66 Identities=14% Similarity=-0.049 Sum_probs=39.9
Q ss_pred HHHHHhCCCceEEeCCCCCCCC-----HHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecC
Q psy14115 46 AHQMVEKDVNGFAVGGLSGGEA-----KEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 46 ~~~l~~~~~~G~aIgGl~~ge~-----~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
+++..+.+++...++.+..+.+ ...-++.+..+.+. .+.|.++.|==++.++..+...|+|.|-..
T Consensus 108 ~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 108 ALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL--VEIPVVAIGGITPENAAEVLAAGADGVAVI 178 (196)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh--CCCCEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 3444556788888875422111 11112333333333 358888886447899999999999987543
No 257
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=37.78 E-value=1.6e+02 Score=29.12 Aligned_cols=75 Identities=13% Similarity=0.090 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeE-ecCCCChHHHHHHHHcCCcEeecCCc
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRY-VMGIGFAVDLLICCALGADMFDCVFP 115 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~-l~Gvg~P~~Il~~V~lGvD~FD~~~P 115 (319)
+..+...+-++.|.+.|++-.-+|-+...+ ++ ++.++.+.+..+ .++. .+....+.+|-.+++.|+|.+....|
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~--~~-~e~i~~i~~~~~--~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~ 93 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGFPIASE--GE-FEAIKKISQEGL--NAEICSLARALKKDIDKAIDCGVDSIHTFIA 93 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCh--HH-HHHHHHHHhcCC--CcEEEEEcccCHHHHHHHHHcCcCEEEEEEc
Confidence 678888999999999999999888664433 33 444555544443 2344 35668899999999999997766655
Q ss_pred c
Q psy14115 116 T 116 (319)
Q Consensus 116 t 116 (319)
+
T Consensus 94 ~ 94 (363)
T TIGR02090 94 T 94 (363)
T ss_pred C
Confidence 4
No 258
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=37.62 E-value=80 Score=30.90 Aligned_cols=91 Identities=14% Similarity=0.059 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCceeeeccCCCCH----H------HHHHHHHHHHhCCCceEEe--CCCCCC----CC
Q psy14115 4 AIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDE----A------LRKDCAHQMVEKDVNGFAV--GGLSGG----EA 67 (319)
Q Consensus 4 ~~av~RT~rWl~r~~~~~~~~~~q~lfgiVqGG~~~----d------lR~~s~~~l~~~~~~G~aI--gGl~~g----e~ 67 (319)
++-+++|.+..+.+-...-.. ..-.|.|-|+-+. + --.++.+.+.+.+++-+|+ |...+- ..
T Consensus 111 eeNi~~T~~vve~Ah~~gv~V--EaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~ 188 (307)
T PRK05835 111 EENLELTSKVVKMAHNAGVSV--EAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGE 188 (307)
T ss_pred HHHHHHHHHHHHHHHHcCCEE--EEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCC
Confidence 566788888877765322110 1123334332111 0 0245556666678887774 433221 12
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEecCC-CChHH
Q psy14115 68 KEDFWYSVLVSINCLPKDKPRYVMGI-GFAVD 98 (319)
Q Consensus 68 ~~e~~~ii~~~~~~LP~dkPr~l~Gv-g~P~~ 98 (319)
+.--++.++.+.+.+ +.|.-+.|- |.|.+
T Consensus 189 p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e 218 (307)
T PRK05835 189 PKLDFERLQEVKRLT--NIPLVLHGASAIPDD 218 (307)
T ss_pred CccCHHHHHHHHHHh--CCCEEEeCCCCCchH
Confidence 334455666666665 588888876 88984
No 259
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=37.55 E-value=71 Score=31.82 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCceEEe--CCCC---CC--CCH--HHHHHHHHHhhcCCCCCCCeEecCC-CCh
Q psy14115 43 KDCAHQMVEKDVNGFAV--GGLS---GG--EAK--EDFWYSVLVSINCLPKDKPRYVMGI-GFA 96 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aI--gGl~---~g--e~~--~e~~~ii~~~~~~LP~dkPr~l~Gv-g~P 96 (319)
.++.+.+.+.+++-+|+ |... .+ ++. .--++.++.+.+.+| +.|.-+.|- |.|
T Consensus 176 eeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~-~vPLVLHGgSGvp 238 (347)
T PRK13399 176 DQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP-NTHLVMHGSSSVP 238 (347)
T ss_pred HHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC-CCCEEEeCCCCCC
Confidence 44555566678887774 4332 22 111 133567777777774 588888876 777
No 260
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=37.33 E-value=1.3e+02 Score=27.16 Aligned_cols=63 Identities=11% Similarity=0.013 Sum_probs=41.3
Q ss_pred HHHHHhCCCceEEeCCCCCCCCH--HHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeec
Q psy14115 46 AHQMVEKDVNGFAVGGLSGGEAK--EDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 46 ~~~l~~~~~~G~aIgGl~~ge~~--~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
++++.+.+.+-..+.+ .....+ ++..++++.+.+. .+.| .+.++.++.++..+...|+|++.+
T Consensus 81 v~~a~~aGad~I~~d~-~~~~~p~~~~~~~~i~~~~~~--~~i~-vi~~v~t~ee~~~a~~~G~d~i~~ 145 (221)
T PRK01130 81 VDALAAAGADIIALDA-TLRPRPDGETLAELVKRIKEY--PGQL-LMADCSTLEEGLAAQKLGFDFIGT 145 (221)
T ss_pred HHHHHHcCCCEEEEeC-CCCCCCCCCCHHHHHHHHHhC--CCCe-EEEeCCCHHHHHHHHHcCCCEEEc
Confidence 5667778888444443 222112 4556666666664 3444 334778999999999999999864
No 261
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=37.31 E-value=96 Score=31.08 Aligned_cols=29 Identities=28% Similarity=0.098 Sum_probs=22.8
Q ss_pred CCCeEec-CCCChHHHHHHHHcCCcEeecC
Q psy14115 85 DKPRYVM-GIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 85 dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
..|...- |+.++.+|..++++|.|.+=.-
T Consensus 255 ~vpVIAdGGI~tg~di~kAlAlGAdaV~iG 284 (369)
T TIGR01304 255 YVHVIADGGIETSGDLVKAIACGADAVVLG 284 (369)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCCEeeeH
Confidence 3566655 6899999999999999976443
No 262
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=36.98 E-value=53 Score=33.07 Aligned_cols=40 Identities=20% Similarity=0.166 Sum_probs=34.0
Q ss_pred HHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecC
Q psy14115 72 WYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 72 ~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
|+.|+.+++.. +.|..+-||.++.+...+++.|+|.++.+
T Consensus 242 W~~i~~lr~~~--~~pvivKgV~~~~dA~~a~~~G~d~I~vs 281 (383)
T cd03332 242 WEDLAFLREWT--DLPIVLKGILHPDDARRAVEAGVDGVVVS 281 (383)
T ss_pred HHHHHHHHHhc--CCCEEEecCCCHHHHHHHHHCCCCEEEEc
Confidence 56677777665 37899999999999999999999999876
No 263
>KOG0369|consensus
Probab=36.84 E-value=1.4e+02 Score=32.73 Aligned_cols=76 Identities=20% Similarity=0.249 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC---CCC-hHHHHHHHHcCCcEeecC
Q psy14115 38 DEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG---IGF-AVDLLICCALGADMFDCV 113 (319)
Q Consensus 38 ~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G---vg~-P~~Il~~V~lGvD~FD~~ 113 (319)
+.+-...-+++|++.+..-+.|-...+-..++.-.-+|..+++..| |.|.|+.. .|+ -..++.|...|.|.+|..
T Consensus 716 ~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~P-dlPiHvHtHDtsGagVAsMlaca~AGADVVDvA 794 (1176)
T KOG0369|consen 716 NLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFP-DLPIHVHTHDTSGAGVASMLACALAGADVVDVA 794 (1176)
T ss_pred cHHHHHHHHHHHHhccCeEEeehhhhcccCHHHHHHHHHHHHhhCC-CCceEEeccCCccHHHHHHHHHHHcCCceeeee
Confidence 3445566788999999988888887666666666667777788776 89999853 243 456899999999999875
Q ss_pred C
Q psy14115 114 F 114 (319)
Q Consensus 114 ~ 114 (319)
-
T Consensus 795 ~ 795 (1176)
T KOG0369|consen 795 V 795 (1176)
T ss_pred c
Confidence 4
No 264
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=36.75 E-value=24 Score=32.24 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=32.1
Q ss_pred CCeEecCCCChHHHHHHHHcCCcEeecCCccccC------------cCCcceeccceEEcCCc
Q psy14115 86 KPRYVMGIGFAVDLLICCALGADMFDCVFPTRTA------------RFGSALVRQGQLQLKRD 136 (319)
Q Consensus 86 kPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~A------------r~G~alt~~G~i~L~~~ 136 (319)
.--+++|+.||.+|..+.++|.|++=. ||.... -...-|.+.|.++..|.
T Consensus 101 ~i~~iPG~~TptEi~~A~~~G~~~vK~-FPA~~~GG~~~ik~l~~p~p~~~~~ptGGV~~~N~ 162 (196)
T PF01081_consen 101 GIPYIPGVMTPTEIMQALEAGADIVKL-FPAGALGGPSYIKALRGPFPDLPFMPTGGVNPDNL 162 (196)
T ss_dssp TSEEEEEESSHHHHHHHHHTT-SEEEE-TTTTTTTHHHHHHHHHTTTTT-EEEEBSS--TTTH
T ss_pred CCcccCCcCCHHHHHHHHHCCCCEEEE-ecchhcCcHHHHHHHhccCCCCeEEEcCCCCHHHH
Confidence 345788999999999999999998743 344332 11344456688888764
No 265
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=36.73 E-value=1.3e+02 Score=28.49 Aligned_cols=85 Identities=14% Similarity=0.079 Sum_probs=53.8
Q ss_pred CCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCC--------CCCCHHHHHHHHHHhhcCCCCCCCeEecCCC---
Q psy14115 26 TQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLS--------GGEAKEDFWYSVLVSINCLPKDKPRYVMGIG--- 94 (319)
Q Consensus 26 ~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~--------~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg--- 94 (319)
.|+.++.. ...+...+.+..|.+.+++-+-+|+.+ .++++.+. +..+.+..|+ .+...+..+
T Consensus 10 ~Qs~~~~~---~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~---i~~~~~~~~~-~~l~~~~r~~~~ 82 (275)
T cd07937 10 HQSLLATR---MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWER---LRELRKAMPN-TPLQMLLRGQNL 82 (275)
T ss_pred hhchhcee---ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHH---HHHHHHhCCC-Cceehhcccccc
Confidence 46555442 566777778999999999999998754 24444433 3444444453 333333322
Q ss_pred ----------ChHHHHHHHHcCCcEeecCCccc
Q psy14115 95 ----------FAVDLLICCALGADMFDCVFPTR 117 (319)
Q Consensus 95 ----------~P~~Il~~V~lGvD~FD~~~Ptr 117 (319)
...+|-.+...|+|.+-...|..
T Consensus 83 ~~~~~~p~~~~~~di~~~~~~g~~~iri~~~~~ 115 (275)
T cd07937 83 VGYRHYPDDVVELFVEKAAKNGIDIFRIFDALN 115 (275)
T ss_pred cCccCCCcHHHHHHHHHHHHcCCCEEEEeecCC
Confidence 56667788899999876666654
No 266
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=36.31 E-value=3.5e+02 Score=26.06 Aligned_cols=104 Identities=17% Similarity=0.093 Sum_probs=70.0
Q ss_pred HHHHhhcCCCCCceeeeccCCC-CHHHHHHHHHHHHhCCCceEEeCCC-------------------CCCCCHHHHHHHH
Q psy14115 16 RCLAAHRNPTTQNIFPIVQGGL-DEALRKDCAHQMVEKDVNGFAVGGL-------------------SGGEAKEDFWYSV 75 (319)
Q Consensus 16 r~~~~~~~~~~q~lfgiVqGG~-~~dlR~~s~~~l~~~~~~G~aIgGl-------------------~~ge~~~e~~~ii 75 (319)
+.+++.+..++..+++-+.+|. +.+.=.+-++.|.+.+.+-+-+|=. ..|.+.++..+++
T Consensus 6 ~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~ 85 (265)
T COG0159 6 QKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELV 85 (265)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 3333333333457888888887 7777778888888999988887732 2345667778888
Q ss_pred HHhhcCCCCCCCeEecCCCChH-------HHHHHHHcCCcE-eecCCccccCc
Q psy14115 76 LVSINCLPKDKPRYVMGIGFAV-------DLLICCALGADM-FDCVFPTRTAR 120 (319)
Q Consensus 76 ~~~~~~LP~dkPr~l~Gvg~P~-------~Il~~V~lGvD~-FD~~~Ptr~Ar 120 (319)
+.+++.= .+.|..+|+-.+|. .+-.|-+.|||- +--..|...+.
T Consensus 86 ~~~r~~~-~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~ 137 (265)
T COG0159 86 EEIRAKG-VKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESD 137 (265)
T ss_pred HHHHhcC-CCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHH
Confidence 8877442 35688899887773 255788899994 44445555443
No 267
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=35.87 E-value=97 Score=29.93 Aligned_cols=63 Identities=19% Similarity=0.294 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCceEEe--CCC---CCCCCHHHHHHHHHHhhcCCCCCCCeEecCC-CChH-HHHHHHHcCCc
Q psy14115 43 KDCAHQMVEKDVNGFAV--GGL---SGGEAKEDFWYSVLVSINCLPKDKPRYVMGI-GFAV-DLLICCALGAD 108 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aI--gGl---~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gv-g~P~-~Il~~V~lGvD 108 (319)
.++.+.+.+.+++-+|+ |.. -.+++ .--++.++.+.+.+ +.|.-+.|- |.|. ++..++.+||-
T Consensus 159 eeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p-~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~~Gi~ 228 (285)
T PRK07709 159 AECKHLVEATGIDCLAPALGSVHGPYKGEP-NLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTS 228 (285)
T ss_pred HHHHHHHHHhCCCEEEEeecccccCcCCCC-ccCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHcCCe
Confidence 34555555678887774 433 22333 22234555555555 588888875 8884 57789999983
No 268
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=35.52 E-value=1.4e+02 Score=29.86 Aligned_cols=42 Identities=19% Similarity=-0.007 Sum_probs=32.6
Q ss_pred HHHHHHHhhcCCCC-CCCeEec-CCCChHHHHHHHHcCCcEeec
Q psy14115 71 FWYSVLVSINCLPK-DKPRYVM-GIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 71 ~~~ii~~~~~~LP~-dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
-++.|..+...++. +.|..-. ||.+++|++..+..|+|.+-.
T Consensus 238 ~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi 281 (420)
T PRK08318 238 ALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQV 281 (420)
T ss_pred HHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChhee
Confidence 47778777776653 5677766 588999999999999997643
No 269
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=35.44 E-value=36 Score=32.01 Aligned_cols=45 Identities=24% Similarity=0.388 Sum_probs=33.6
Q ss_pred CCCeEecCCCChHHHHHHHHcCCcE-----eecCCccccCcCCcceeccceEEcCC
Q psy14115 85 DKPRYVMGIGFAVDLLICCALGADM-----FDCVFPTRTARFGSALVRQGQLQLKR 135 (319)
Q Consensus 85 dkPr~l~Gvg~P~~Il~~V~lGvD~-----FD~~~Ptr~Ar~G~alt~~G~i~L~~ 135 (319)
+.|..+.++ .|+.++.||..|.|| |||.|+ .|+.|..+-.++|..
T Consensus 61 ~lPICVSaV-ep~~f~~aV~AGAdliEIGNfDsFY~-----qGr~f~a~eVL~Lt~ 110 (242)
T PF04481_consen 61 NLPICVSAV-EPELFVAAVKAGADLIEIGNFDSFYA-----QGRRFSAEEVLALTR 110 (242)
T ss_pred CCCeEeecC-CHHHHHHHHHhCCCEEEecchHHHHh-----cCCeecHHHHHHHHH
Confidence 467887665 799999999999999 577665 477776665555543
No 270
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=35.38 E-value=38 Score=31.10 Aligned_cols=29 Identities=17% Similarity=0.489 Sum_probs=24.1
Q ss_pred CeEecCCCChHHHHHHHHcCCcEeecCCcc
Q psy14115 87 PRYVMGIGFAVDLLICCALGADMFDCVFPT 116 (319)
Q Consensus 87 Pr~l~Gvg~P~~Il~~V~lGvD~FD~~~Pt 116 (319)
-.+++|+-||.++..+.++|.|++= .||.
T Consensus 102 i~~iPG~~TptEi~~A~~~Ga~~vK-lFPA 130 (204)
T TIGR01182 102 IPIIPGVATPSEIMLALELGITALK-LFPA 130 (204)
T ss_pred CcEECCCCCHHHHHHHHHCCCCEEE-ECCc
Confidence 3578899999999999999999874 3563
No 271
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=35.30 E-value=57 Score=32.85 Aligned_cols=40 Identities=20% Similarity=0.144 Sum_probs=33.9
Q ss_pred HHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecC
Q psy14115 72 WYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 72 ~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
|+-|+.+++..+ .|..+-||-++.+...++.+|+|.++..
T Consensus 234 W~di~~lr~~~~--~pvivKgV~s~~dA~~a~~~Gvd~I~Vs 273 (381)
T PRK11197 234 WKDLEWIRDFWD--GPMVIKGILDPEDARDAVRFGADGIVVS 273 (381)
T ss_pred HHHHHHHHHhCC--CCEEEEecCCHHHHHHHHhCCCCEEEEC
Confidence 455777777664 8999999999999999999999999865
No 272
>PTZ00413 lipoate synthase; Provisional
Probab=35.18 E-value=1.8e+02 Score=29.61 Aligned_cols=77 Identities=12% Similarity=0.028 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHhCCCceEEeCCCCC----CCCHHHHHHHHHHhhcCCCCCCCeEecC--CCChHHHHHHHHcCCcE
Q psy14115 36 GLDEALRKDCAHQMVEKDVNGFAVGGLSG----GEAKEDFWYSVLVSINCLPKDKPRYVMG--IGFAVDLLICCALGADM 109 (319)
Q Consensus 36 G~~~dlR~~s~~~l~~~~~~G~aIgGl~~----ge~~~e~~~ii~~~~~~LP~dkPr~l~G--vg~P~~Il~~V~lGvD~ 109 (319)
-++++.=.+-++...++++.-.+|....- ....+.+.++|..+.+..|.-+.=-+.| .|++..+-...+.|+|.
T Consensus 176 ~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~eAG~dv 255 (398)
T PTZ00413 176 PLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLANSPLSV 255 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEEEcCCccccCHHHHHHHHhcCCCE
Confidence 35888888888888888887444443211 1234678889999888777666555667 68999999999999999
Q ss_pred eec
Q psy14115 110 FDC 112 (319)
Q Consensus 110 FD~ 112 (319)
|-.
T Consensus 256 ynH 258 (398)
T PTZ00413 256 YAH 258 (398)
T ss_pred Eec
Confidence 854
No 273
>PRK15108 biotin synthase; Provisional
Probab=35.02 E-value=2e+02 Score=28.31 Aligned_cols=49 Identities=18% Similarity=0.116 Sum_probs=25.2
Q ss_pred ceeeeccCCCCHHHHHHHHHHHHhCCCc---eEEeCCCCCCCCHHHHHHHHHHhh
Q psy14115 28 NIFPIVQGGLDEALRKDCAHQMVEKDVN---GFAVGGLSGGEAKEDFWYSVLVSI 79 (319)
Q Consensus 28 ~lfgiVqGG~~~dlR~~s~~~l~~~~~~---G~aIgGl~~ge~~~e~~~ii~~~~ 79 (319)
..|+-|..+-..+-|.+.++.+.+.++. |..+| .||+.+++.+.+..+.
T Consensus 159 ~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~G---lgEt~ed~v~~~~~l~ 210 (345)
T PRK15108 159 EFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVG---LGETVKDRAGLLLQLA 210 (345)
T ss_pred HhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEe---CCCCHHHHHHHHHHHH
Confidence 3555554444555666666666555531 22222 2566666665555444
No 274
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=34.92 E-value=1.7e+02 Score=25.56 Aligned_cols=64 Identities=16% Similarity=0.053 Sum_probs=44.3
Q ss_pred HHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEe--cCCCChHHHHHHHHcCCcEeecCCcc
Q psy14115 46 AHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYV--MGIGFAVDLLICCALGADMFDCVFPT 116 (319)
Q Consensus 46 ~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l--~Gvg~P~~Il~~V~lGvD~FD~~~Pt 116 (319)
++.+.+.+.+++.+-+.+. .+...++++.+.+. +.+..+ ++..+|.++..+...|+|.+=. +|.
T Consensus 70 ~~~~~~aGad~i~~h~~~~---~~~~~~~i~~~~~~---g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~-~~~ 135 (202)
T cd04726 70 AEMAFKAGADIVTVLGAAP---LSTIKKAVKAAKKY---GKEVQVDLIGVEDPEKRAKLLKLGVDIVIL-HRG 135 (202)
T ss_pred HHHHHhcCCCEEEEEeeCC---HHHHHHHHHHHHHc---CCeEEEEEeCCCCHHHHHHHHHCCCCEEEE-cCc
Confidence 4667788999998877542 23455566665542 344443 7999999999999999997544 344
No 275
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=34.82 E-value=2.4e+02 Score=22.58 Aligned_cols=66 Identities=17% Similarity=0.133 Sum_probs=40.4
Q ss_pred HHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEe
Q psy14115 44 DCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMF 110 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~F 110 (319)
.-++.+.+.+.+-++|... ...+.....++++.+.+.-|++.+.++=|.....+--.+-+.|+|.+
T Consensus 41 ~l~~~~~~~~pdvV~iS~~-~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~~ 106 (119)
T cd02067 41 EIVEAAKEEDADAIGLSGL-LTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDAY 106 (119)
T ss_pred HHHHHHHHcCCCEEEEecc-ccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeEE
Confidence 3444455677888888765 23456667778888777644244445545433322235678999965
No 276
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=34.64 E-value=1.2e+02 Score=27.25 Aligned_cols=61 Identities=13% Similarity=0.046 Sum_probs=37.6
Q ss_pred HHhCCCceEEeC--CCCCCC--CHHHHHHHHHHhhcCCCCCCCeEe-cCCCChHHHHHHHHcCCcEee
Q psy14115 49 MVEKDVNGFAVG--GLSGGE--AKEDFWYSVLVSINCLPKDKPRYV-MGIGFAVDLLICCALGADMFD 111 (319)
Q Consensus 49 l~~~~~~G~aIg--Gl~~ge--~~~e~~~ii~~~~~~LP~dkPr~l-~Gvg~P~~Il~~V~lGvD~FD 111 (319)
..+.+++.+.+. |..... ....-++.+..+.+.+ +.|... -|+.+|.++..++++|+|.+=
T Consensus 139 a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~~~~~~~~~l~~GadgV~ 204 (219)
T cd04729 139 AAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRINSPEQAAKALELGADAVV 204 (219)
T ss_pred HHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHCCCCEEE
Confidence 344677776543 321110 1111234555555554 578886 578999999999999999763
No 277
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=34.34 E-value=3.4e+02 Score=24.17 Aligned_cols=84 Identities=18% Similarity=0.137 Sum_probs=53.3
Q ss_pred CceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCC-------------CCCCHHHHHHHHHHhhcCCCCCCCeEe---
Q psy14115 27 QNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLS-------------GGEAKEDFWYSVLVSINCLPKDKPRYV--- 90 (319)
Q Consensus 27 q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~-------------~ge~~~e~~~ii~~~~~~LP~dkPr~l--- 90 (319)
..+..-+ +|.+++.-.++++.+.+.+++|+-|-.-. .....+...++++.+.+.++ .|.-+
T Consensus 55 ~p~~~qi-~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~--~~v~vk~r 131 (231)
T cd02801 55 RPLIVQL-GGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP--IPVTVKIR 131 (231)
T ss_pred CCEEEEE-cCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC--CCEEEEEe
Confidence 4455444 45677777888888888899999874211 12356667888888888776 44433
Q ss_pred cCCC---ChHHHH-HHHHcCCcEeecC
Q psy14115 91 MGIG---FAVDLL-ICCALGADMFDCV 113 (319)
Q Consensus 91 ~Gvg---~P~~Il-~~V~lGvD~FD~~ 113 (319)
.|.. ...+++ .+...|+|.+...
T Consensus 132 ~~~~~~~~~~~~~~~l~~~Gvd~i~v~ 158 (231)
T cd02801 132 LGWDDEEETLELAKALEDAGASALTVH 158 (231)
T ss_pred eccCCchHHHHHHHHHHHhCCCEEEEC
Confidence 2332 233433 3456899998653
No 278
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=34.01 E-value=56 Score=31.73 Aligned_cols=55 Identities=24% Similarity=0.171 Sum_probs=35.6
Q ss_pred EeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEe-cCCCChHHHHHHHHcCCcEeecCCcccc
Q psy14115 58 AVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYV-MGIGFAVDLLICCALGADMFDCVFPTRT 118 (319)
Q Consensus 58 aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l-~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~ 118 (319)
+-||..--.+++...++.+.+ +.|..- .=+|+-.+...+.++|+|++|++--.+-
T Consensus 46 ~~ggv~R~~~p~~I~~I~~~V------~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe~lrP 101 (287)
T TIGR00343 46 ASGGVARMSDPKMIKEIMDAV------SIPVMAKVRIGHFVEAQILEALGVDYIDESEVLTP 101 (287)
T ss_pred hcCCeeecCCHHHHHHHHHhC------CCCEEEEeeccHHHHHHHHHHcCCCEEEccCCCCc
Confidence 345554444566666655543 344442 2358899999999999999997664333
No 279
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=33.64 E-value=4.4e+02 Score=25.76 Aligned_cols=94 Identities=16% Similarity=0.062 Sum_probs=54.4
Q ss_pred HHHHHHHHhhcCCCCCceeeeccCCC-------CHHHHHHHHHHHHhCCCceEEe-------CCCCCCCCHHHHHHHHHH
Q psy14115 12 RWLDRCLAAHRNPTTQNIFPIVQGGL-------DEALRKDCAHQMVEKDVNGFAV-------GGLSGGEAKEDFWYSVLV 77 (319)
Q Consensus 12 rWl~r~~~~~~~~~~q~lfgiVqGG~-------~~dlR~~s~~~l~~~~~~G~aI-------gGl~~ge~~~e~~~ii~~ 77 (319)
.|+++... .+ ....+...| |+. ..+--.++++.+.+ .++.+.+ .|...+..++.+.+++..
T Consensus 123 ~~l~~i~~-~~--~~~~i~vsi-~~~~~~~~~~~~~dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~ 197 (335)
T TIGR01036 123 VLVERLKR-AR--YKGPIGINI-GKNKDTPSEDAKEDYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTA 197 (335)
T ss_pred HHHHHHhh-cc--CCCcEEEEE-eCCCCCCcccCHHHHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHH
Confidence 46666443 11 124566666 444 34556666776654 2555554 244456677778888877
Q ss_pred hhcCCC-----CCCCeEe-cCC--C--ChHHHHH-HHHcCCcEe
Q psy14115 78 SINCLP-----KDKPRYV-MGI--G--FAVDLLI-CCALGADMF 110 (319)
Q Consensus 78 ~~~~LP-----~dkPr~l-~Gv--g--~P~~Il~-~V~lGvD~F 110 (319)
+.+.+. ..+|.++ ++. . .+.++.. +.+.|+|-+
T Consensus 198 V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi 241 (335)
T TIGR01036 198 VKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGV 241 (335)
T ss_pred HHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEE
Confidence 765442 1378776 443 2 3666665 667899965
No 280
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=33.29 E-value=34 Score=33.92 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=33.8
Q ss_pred HHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecC
Q psy14115 71 FWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 71 ~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
.|+-|+.+++.++ .|..+=||-+|+++..+++.|+|-+|.+
T Consensus 213 ~w~~i~~~~~~~~--~pvivKgv~~~~da~~~~~~G~~~i~vs 253 (356)
T PF01070_consen 213 TWDDIEWIRKQWK--LPVIVKGVLSPEDAKRAVDAGVDGIDVS 253 (356)
T ss_dssp SHHHHHHHHHHCS--SEEEEEEE-SHHHHHHHHHTT-SEEEEE
T ss_pred CHHHHHHHhcccC--CceEEEecccHHHHHHHHhcCCCEEEec
Confidence 3667777777775 8999999999999999999999999876
No 281
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=32.91 E-value=1.6e+02 Score=27.85 Aligned_cols=66 Identities=26% Similarity=0.368 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCceeeeccCC-CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHh
Q psy14115 7 KDRTVRWLDRCLAAHRNPTTQNIFPIVQGG-LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVS 78 (319)
Q Consensus 7 v~RT~rWl~r~~~~~~~~~~q~lfgiVqGG-~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~ 78 (319)
++.+++.+++.+...-....+ -..|+.|| ..++ .+.+-+...+++|+.|||.+. +.++|.++++.+
T Consensus 182 ~~~v~~~Ir~~l~~~~~~~~~-~~~IlYGGSV~~~---N~~~l~~~~~vDG~LVG~Asl--~~~~f~~ii~~~ 248 (250)
T PRK00042 182 AQEVHAFIRAVLAELYGEVAE-KVRILYGGSVKPD---NAAELMAQPDIDGALVGGASL--KAEDFLAIVKAA 248 (250)
T ss_pred HHHHHHHHHHHHHHhcccccC-CceEEEcCCCCHH---HHHHHhcCCCCCEEEEeeeee--chHHHHHHHHHh
Confidence 445555555655432111011 22455555 5543 333445567899999999875 678899988753
No 282
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.79 E-value=1.9e+02 Score=27.77 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=44.5
Q ss_pred HhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCc
Q psy14115 50 VEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTAR 120 (319)
Q Consensus 50 ~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar 120 (319)
.+.+++.+.+.. .+.+++.++++.+ +...|....|==++.++....+.|+|.+-..++|..|.
T Consensus 205 ~~~gaDyI~lD~----~~~e~l~~~~~~~----~~~i~i~AiGGIt~~ni~~~a~~Gvd~IAvg~l~~sa~ 267 (277)
T PRK08072 205 VAAGADIIMFDN----RTPDEIREFVKLV----PSAIVTEASGGITLENLPAYGGTGVDYISLGFLTHSVK 267 (277)
T ss_pred HHcCCCEEEECC----CCHHHHHHHHHhc----CCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhcCCc
Confidence 346778777753 3456666666543 22345556654489999999999999999999988653
No 283
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=32.62 E-value=4.1e+02 Score=24.65 Aligned_cols=102 Identities=18% Similarity=0.162 Sum_probs=59.8
Q ss_pred HHHHHHHHhhcCCCCCceeeeccCCC--CHHHHHHHHHHHHhCCCceEEeCCCCCCCC----------------------
Q psy14115 12 RWLDRCLAAHRNPTTQNIFPIVQGGL--DEALRKDCAHQMVEKDVNGFAVGGLSGGEA---------------------- 67 (319)
Q Consensus 12 rWl~r~~~~~~~~~~q~lfgiVqGG~--~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~---------------------- 67 (319)
.|+.+.++++.-+.....|-+..... +.+.=.+.+++|.+.| -.+||..++.|-+
T Consensus 106 ~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~~~G-~~ialDDFGtG~ssl~~L~~l~~d~iKID~~fi~~ 184 (256)
T COG2200 106 DLLLRLLARLGLPPHRLVLEITESALIDDLDTALALLRQLRELG-VRIALDDFGTGYSSLSYLKRLPPDILKIDRSFVRD 184 (256)
T ss_pred HHHHHHHHHhCCCcceEEEEEeCchhhcCHHHHHHHHHHHHHCC-CeEEEECCCCCHHHHHHHhhCCCCeEEECHHHHhh
Confidence 34444444432222355666666543 3333444667777777 4677887776621
Q ss_pred ------HHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCcc
Q psy14115 68 ------KEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPT 116 (319)
Q Consensus 68 ------~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Pt 116 (319)
...+.+.+......+ +.....-||-+++++-.+-++|||.+-.-+-.
T Consensus 185 i~~~~~~~~iv~~iv~la~~l--~~~vvaEGVEt~~ql~~L~~~G~~~~QGylf~ 237 (256)
T COG2200 185 LETDARDQAIVRAIVALAHKL--GLTVVAEGVETEEQLDLLRELGCDYLQGYLFS 237 (256)
T ss_pred cccCcchHHHHHHHHHHHHHC--CCEEEEeecCCHHHHHHHHHcCCCeEeecccc
Confidence 112333333333333 35566789999999999999999987654433
No 284
>PLN02334 ribulose-phosphate 3-epimerase
Probab=32.53 E-value=1.7e+02 Score=26.62 Aligned_cols=60 Identities=15% Similarity=-0.018 Sum_probs=40.6
Q ss_pred CceEEeCCCCCCCCHH----HHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCC
Q psy14115 54 VNGFAVGGLSGGEAKE----DFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVF 114 (319)
Q Consensus 54 ~~G~aIgGl~~ge~~~----e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~ 114 (319)
++.+.+|.+..|.+++ ...+.+..+.+.++ +.|..+-|==+++++..+++.|+|.|-...
T Consensus 140 ~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~-~~~I~a~GGI~~e~i~~l~~aGad~vvvgs 203 (229)
T PLN02334 140 VDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYP-ELDIEVDGGVGPSTIDKAAEAGANVIVAGS 203 (229)
T ss_pred CCEEEEEEEecCCCccccCHHHHHHHHHHHHhCC-CCcEEEeCCCCHHHHHHHHHcCCCEEEECh
Confidence 7777777765554443 23445555666555 357777653389999999999999986653
No 285
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=32.53 E-value=3.3e+02 Score=23.78 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=25.5
Q ss_pred CCCeEecCCCChHHHHHHHHcCCcEeecCC
Q psy14115 85 DKPRYVMGIGFAVDLLICCALGADMFDCVF 114 (319)
Q Consensus 85 dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~ 114 (319)
+.+..+-||.++.+...+-.+|||.+-..|
T Consensus 202 ~~~via~gVe~~~~~~~~~~~gi~~~QG~~ 231 (240)
T cd01948 202 GLKVVAEGVETEEQLELLRELGCDYVQGYL 231 (240)
T ss_pred CCeEEEEecCCHHHHHHHHHcCCCeeeece
Confidence 456777899999999999999999986544
No 286
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.24 E-value=66 Score=29.61 Aligned_cols=32 Identities=22% Similarity=0.483 Sum_probs=25.9
Q ss_pred CeEecCCCChHHHHHHHHcCCcEeecCCccccC
Q psy14115 87 PRYVMGIGFAVDLLICCALGADMFDCVFPTRTA 119 (319)
Q Consensus 87 Pr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~A 119 (319)
--+++|+.||.++..+.++|+|++=. ||....
T Consensus 109 i~~iPG~~TptEi~~a~~~Ga~~vKl-FPa~~~ 140 (212)
T PRK05718 109 IPLIPGVSTPSELMLGMELGLRTFKF-FPAEAS 140 (212)
T ss_pred CCEeCCCCCHHHHHHHHHCCCCEEEE-ccchhc
Confidence 34778999999999999999998644 786543
No 287
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=32.24 E-value=56 Score=29.58 Aligned_cols=33 Identities=24% Similarity=0.113 Sum_probs=29.8
Q ss_pred CCCeEecCCCChHHHHHHHHcCCcEeecCCccc
Q psy14115 85 DKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117 (319)
Q Consensus 85 dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr 117 (319)
.++.++-.+.++.++..++.+|||.+-+.+|.+
T Consensus 201 G~~v~~wTvn~~~~~~~l~~~GVdgi~TD~p~~ 233 (233)
T cd08582 201 GLKLNVWTVDDAEDAKRLIELGVDSITTNRPGR 233 (233)
T ss_pred CCEEEEEeCCCHHHHHHHHHCCCCEEEcCCCCC
Confidence 567888899999999999999999999999964
No 288
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=32.18 E-value=2.1e+02 Score=28.70 Aligned_cols=74 Identities=19% Similarity=0.156 Sum_probs=44.6
Q ss_pred HHHHHhCCCceEEeCCCCCC-------------CCHHH-HHHHHHHhhc-CCCCCCCeEec-CCCChHHHHHHHHcCCcE
Q psy14115 46 AHQMVEKDVNGFAVGGLSGG-------------EAKED-FWYSVLVSIN-CLPKDKPRYVM-GIGFAVDLLICCALGADM 109 (319)
Q Consensus 46 ~~~l~~~~~~G~aIgGl~~g-------------e~~~e-~~~ii~~~~~-~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~ 109 (319)
++.+...+++++.|.|..+| .+... +.++.+.+.. .+..+-|.... |+.++.|++.++++|.|.
T Consensus 231 a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~ 310 (392)
T cd02808 231 AAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADA 310 (392)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCe
Confidence 33333445999999887533 12221 1222222211 12234566655 689999999999999999
Q ss_pred eecCCccccC
Q psy14115 110 FDCVFPTRTA 119 (319)
Q Consensus 110 FD~~~Ptr~A 119 (319)
+-..-+...|
T Consensus 311 V~ig~~~l~a 320 (392)
T cd02808 311 VGIGTAALIA 320 (392)
T ss_pred eeechHHHHh
Confidence 8776666554
No 289
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=32.01 E-value=4.6e+02 Score=25.00 Aligned_cols=9 Identities=22% Similarity=-0.056 Sum_probs=5.2
Q ss_pred CHHHHhhhh
Q psy14115 158 TRAYLHHIA 166 (319)
Q Consensus 158 tRAYLhHLl 166 (319)
|.+.|.+|.
T Consensus 284 ~~~~l~~~~ 292 (309)
T TIGR00423 284 TVEELIEAI 292 (309)
T ss_pred CHHHHHHHH
Confidence 556666655
No 290
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=31.92 E-value=1.3e+02 Score=28.33 Aligned_cols=63 Identities=22% Similarity=0.354 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhC-CCceEEeCCCCCCCCHHHHHHHH
Q psy14115 7 KDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEK-DVNGFAVGGLSGGEAKEDFWYSV 75 (319)
Q Consensus 7 v~RT~rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~-~~~G~aIgGl~~ge~~~e~~~ii 75 (319)
++.+++.+++.+....... ..-..|+-||--.. .-++++.+. +++|+.+||.+. +.++|.+++
T Consensus 178 ~~ev~~~ir~~l~~~~~~~-~~~~~IlYGGSV~~---~N~~~l~~~~~vDG~LVG~Asl--~~~~f~~Ii 241 (242)
T cd00311 178 AQEVHAFIRKLLAELYGEV-AEKVRILYGGSVNP---ENAAELLAQPDIDGVLVGGASL--KAESFLDII 241 (242)
T ss_pred HHHHHHHHHHHHHHhcccc-cCceeEEECCCCCH---HHHHHHhcCCCCCEEEeehHhh--CHHHHHHHh
Confidence 4455555555554332111 11235666664322 345556555 599999999876 567777775
No 291
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=31.74 E-value=4.3e+02 Score=25.82 Aligned_cols=100 Identities=13% Similarity=-0.013 Sum_probs=58.1
Q ss_pred HHHHHHHHhhcCCCCCceeeeccCCC------CHHHHHHHHHHHHhCCCceEEeC-------CCCCCCCHHHHHHHHHHh
Q psy14115 12 RWLDRCLAAHRNPTTQNIFPIVQGGL------DEALRKDCAHQMVEKDVNGFAVG-------GLSGGEAKEDFWYSVLVS 78 (319)
Q Consensus 12 rWl~r~~~~~~~~~~q~lfgiVqGG~------~~dlR~~s~~~l~~~~~~G~aIg-------Gl~~ge~~~e~~~ii~~~ 78 (319)
.|+++..+.. .+..+++.|.|.. ..+--.++++.+.+ .++++-+- |...++..+.+.+++..+
T Consensus 126 ~~~~~l~~~~---~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aV 201 (344)
T PRK05286 126 ALAERLKKAY---RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAAL 201 (344)
T ss_pred HHHHHHHHhc---CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHH
Confidence 4666544322 2345788886521 34455566666643 45665542 222356777888888888
Q ss_pred hcCCCC---CCCeEe-cCCCC----hHHHHH-HHHcCCcEeecCCc
Q psy14115 79 INCLPK---DKPRYV-MGIGF----AVDLLI-CCALGADMFDCVFP 115 (319)
Q Consensus 79 ~~~LP~---dkPr~l-~Gvg~----P~~Il~-~V~lGvD~FD~~~P 115 (319)
++.++. +.|..+ ++... ..++.. +.+.|+|.+...-.
T Consensus 202 r~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt 247 (344)
T PRK05286 202 KEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNT 247 (344)
T ss_pred HHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 876653 578876 45432 334443 44689998866543
No 292
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=31.46 E-value=2.5e+02 Score=29.26 Aligned_cols=64 Identities=22% Similarity=0.272 Sum_probs=39.1
Q ss_pred HHHHHHhCCCceEEeCC-CC----------CCCCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEe
Q psy14115 45 CAHQMVEKDVNGFAVGG-LS----------GGEAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMF 110 (319)
Q Consensus 45 s~~~l~~~~~~G~aIgG-l~----------~ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~F 110 (319)
-++.+.+.+++++.+|. .+ .|-+...-...+..+.+.. +.|.+.- |+.+|.+|..|+++|.|.+
T Consensus 302 ~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~--~vpVIadGGI~~~~di~kAla~GA~~V 377 (505)
T PLN02274 302 QAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH--GVPVIADGGISNSGHIVKALTLGASTV 377 (505)
T ss_pred HHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 35667778999998852 10 1111111111233333322 4677776 6899999999999999953
No 293
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=31.27 E-value=59 Score=29.37 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=28.6
Q ss_pred CCCeEecCCCChHHHHHHHHcCCcEeecCCc
Q psy14115 85 DKPRYVMGIGFAVDLLICCALGADMFDCVFP 115 (319)
Q Consensus 85 dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~P 115 (319)
.++.++-.+.+|.++-.++.+|||.+-+.+|
T Consensus 200 g~~v~~Wtvn~~~~~~~~~~~GVdgi~TD~P 230 (230)
T cd08563 200 GIPVRLWTVNEEEDMKRLKDLGVDGIITNYP 230 (230)
T ss_pred CCEEEEEecCCHHHHHHHHHCCCCEEeCCCC
Confidence 5788888999999999999999999999887
No 294
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=31.26 E-value=4.5e+02 Score=25.71 Aligned_cols=76 Identities=14% Similarity=-0.017 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHHhCCCceEEe-CCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcC-CcEeecC
Q psy14115 36 GLDEALRKDCAHQMVEKDVNGFAV-GGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALG-ADMFDCV 113 (319)
Q Consensus 36 G~~~dlR~~s~~~l~~~~~~G~aI-gGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lG-vD~FD~~ 113 (319)
|...+.=.+-++.|.+.+++-+.+ +|........-+++....+.+.+ +.|..+.|-=+|.++..+++.| +|++-..
T Consensus 237 ~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G~i~~~~a~~~l~~g~~D~V~~g 314 (338)
T cd02933 237 SDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAF--KGPLIAAGGYDAESAEAALADGKADLVAFG 314 (338)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHc--CCCEEEECCCCHHHHHHHHHcCCCCEEEeC
Confidence 445555566778888888888888 34222112223455555555555 4788877643599999999987 8987543
No 295
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=31.24 E-value=2.1e+02 Score=27.67 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=47.3
Q ss_pred eeccCCCCHHHHHHHHHHHHh-------CCCc---eEEe--CCCCCCCCHHHHHHHHHHhhcCCCCC-CCeEec----CC
Q psy14115 31 PIVQGGLDEALRKDCAHQMVE-------KDVN---GFAV--GGLSGGEAKEDFWYSVLVSINCLPKD-KPRYVM----GI 93 (319)
Q Consensus 31 giVqGG~~~dlR~~s~~~l~~-------~~~~---G~aI--gGl~~ge~~~e~~~ii~~~~~~LP~d-kPr~l~----Gv 93 (319)
-++.++.+++.|++|++.|.. +|++ .+.| || ..|...+-+.++++... .+|.. +.+.++ |.
T Consensus 114 ~inL~S~~~ev~e~Si~~L~~~~~~~~~lG~~~~~~vViHpG~-~~~~ke~al~r~~~~l~-~l~~~~~~~L~LEN~~~~ 191 (303)
T PRK02308 114 FVVLNSPKPEVVENSIKDLEYHAKLLDLMGIDDSSKINIHVGG-AYGDKEKALERFIENIK-KLPESIKKRLTLENDDKT 191 (303)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCc-cCCCHHHHHHHHHHHHH-HhhHHhCCEEEEeeCCCC
Confidence 466677789999999988864 5777 6664 44 33322333444444433 33332 455553 56
Q ss_pred CChHHHHHHHH-cCCcE-ee
Q psy14115 94 GFAVDLLICCA-LGADM-FD 111 (319)
Q Consensus 94 g~P~~Il~~V~-lGvD~-FD 111 (319)
+++++++..++ .|+=+ ||
T Consensus 192 ~t~~ell~I~e~~~ipv~~D 211 (303)
T PRK02308 192 YTVEELLYICEKLGIPVVFD 211 (303)
T ss_pred CCHHHHHHHHHHcCCCEEEe
Confidence 89999988665 45442 56
No 296
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=31.16 E-value=60 Score=30.16 Aligned_cols=48 Identities=19% Similarity=0.409 Sum_probs=33.7
Q ss_pred eEecCCCChHHHHHHHHcCCcEeecCCccccC--------cC----CcceeccceEEcCCc
Q psy14115 88 RYVMGIGFAVDLLICCALGADMFDCVFPTRTA--------RF----GSALVRQGQLQLKRD 136 (319)
Q Consensus 88 r~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~A--------r~----G~alt~~G~i~L~~~ 136 (319)
-|++|+.||.++..+.++|.+.+-. ||.... .. +.-+.++|.++++|.
T Consensus 108 p~~PG~~TptEi~~Ale~G~~~lK~-FPa~~~Gg~~~~ka~~gP~~~v~~~pTGGVs~~N~ 167 (211)
T COG0800 108 PYIPGVATPTEIMAALELGASALKF-FPAEVVGGPAMLKALAGPFPQVRFCPTGGVSLDNA 167 (211)
T ss_pred cccCCCCCHHHHHHHHHcChhheee-cCccccCcHHHHHHHcCCCCCCeEeecCCCCHHHH
Confidence 3677999999999999999998642 233222 11 245567788888763
No 297
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=31.11 E-value=1.1e+02 Score=29.28 Aligned_cols=37 Identities=32% Similarity=0.286 Sum_probs=28.0
Q ss_pred CCCeEe-cCCCChHHHHHHHHcCCcEeecCCccccCcC
Q psy14115 85 DKPRYV-MGIGFAVDLLICCALGADMFDCVFPTRTARF 121 (319)
Q Consensus 85 dkPr~l-~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~ 121 (319)
+-|..+ -|+|+|.+...+.++|+|-+=..-+...|..
T Consensus 182 ~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~D 219 (262)
T COG2022 182 DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKD 219 (262)
T ss_pred CCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCC
Confidence 467777 6999999999999999997654444444443
No 298
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=30.96 E-value=4.1e+02 Score=24.72 Aligned_cols=84 Identities=17% Similarity=0.140 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeC------CCC----CCCCHHHHHHHHHHhhcCCCCCCCeEecCCC-C-hHHHHH-HH
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVG------GLS----GGEAKEDFWYSVLVSINCLPKDKPRYVMGIG-F-AVDLLI-CC 103 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIg------Gl~----~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg-~-P~~Il~-~V 103 (319)
-..+-..+.++.+.+.+++.+.+. |.. ...+.++..+++...+..+|+..-|..-+-. . ...... ++
T Consensus 184 et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l 263 (296)
T TIGR00433 184 ETVEDRIGLALALANLPPESVPINFLVKIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCF 263 (296)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHH
Confidence 345666778888887776655433 321 1235578889999999999977666543332 1 122223 78
Q ss_pred HcCCcEeecCCccccCcCCcceeccc
Q psy14115 104 ALGADMFDCVFPTRTARFGSALVRQG 129 (319)
Q Consensus 104 ~lGvD~FD~~~Ptr~Ar~G~alt~~G 129 (319)
..|+|-+- -|-+||..|
T Consensus 264 ~~G~n~i~---------~g~~~~~~g 280 (296)
T TIGR00433 264 MAGANSIF---------VGDYLTTTG 280 (296)
T ss_pred HhcCceEE---------EcCcccCCC
Confidence 88988532 266666554
No 299
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=30.89 E-value=6e+02 Score=26.14 Aligned_cols=105 Identities=14% Similarity=0.076 Sum_probs=64.2
Q ss_pred HHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEE---------eCCCCCCCCHHHHHHHHHHhhcCCCCCCC
Q psy14115 17 CLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFA---------VGGLSGGEAKEDFWYSVLVSINCLPKDKP 87 (319)
Q Consensus 17 ~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~a---------IgGl~~ge~~~e~~~ii~~~~~~LP~dkP 87 (319)
.++.|+.....-++.| ++.++..-+.+++.-.+.+.+-.. .||- .|+++.+|.+.|..+.+.+-.+.-
T Consensus 4 ~~~~~~~g~~~Gi~SV--Csahp~VieAAl~~a~~~~~pvLiEAT~NQVdq~GGY-TGmtP~dF~~~V~~iA~~~gf~~~ 80 (421)
T PRK15052 4 LIARHKAGEHIGICSV--CSAHPLVIEAALAFDLNSTRKVLIEATSNQVNQFGGY-TGMTPADFREFVYGIADKVGFPRE 80 (421)
T ss_pred HHHhhhcCCCCceeeE--CCCCHHHHHHHHHHHhhcCCcEEEEeccccccccCCc-CCCCHHHHHHHHHHHHHHcCCChh
Confidence 3444554322223322 356665555556655554433222 2666 789999999999998887765554
Q ss_pred eEecCC--CCh----------------HHHHHHHHcCCcE--eecCCccccCcCCccee
Q psy14115 88 RYVMGI--GFA----------------VDLLICCALGADM--FDCVFPTRTARFGSALV 126 (319)
Q Consensus 88 r~l~Gv--g~P----------------~~Il~~V~lGvD~--FD~~~Ptr~Ar~G~alt 126 (319)
++++|- +.| .-|...|+.|.+. .||+.. .+..+..|+
T Consensus 81 ~iiLggDHlGPn~Wq~~pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~--ca~d~~~L~ 137 (421)
T PRK15052 81 RIILGGDHLGPNCWQQEPADAAMEKSVELVKAYVRAGFSKIHLDASMS--CADDPIPLA 137 (421)
T ss_pred cEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCceEEecCCCC--ccCCCccCC
Confidence 677764 445 2256778999996 588776 555555554
No 300
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=30.85 E-value=2.4e+02 Score=26.20 Aligned_cols=66 Identities=18% Similarity=0.115 Sum_probs=48.3
Q ss_pred HHHHHHhCCCceEEeCCCCCC-CCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEeec
Q psy14115 45 CAHQMVEKDVNGFAVGGLSGG-EAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 45 s~~~l~~~~~~G~aIgGl~~g-e~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
-++.+.+.+++.+.+-++... +....-++++..+.+.. +.|..+- |+.+++++..+.+.|+|.+-.
T Consensus 35 ~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~~Ga~~viv 102 (254)
T TIGR00735 35 LAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLRAGADKVSI 102 (254)
T ss_pred HHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 455556688999998888654 34444566666666654 4677765 689999999999999997643
No 301
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=30.84 E-value=1.3e+02 Score=29.75 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=45.1
Q ss_pred HHHHhCCCceEEeCCCCCCCC------HHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEeec
Q psy14115 47 HQMVEKDVNGFAVGGLSGGEA------KEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 47 ~~l~~~~~~G~aIgGl~~ge~------~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
+...+.+.++....|...|-. ...+..++..+.+.... -|...- |++++.+|+.+.++|.|.+-+
T Consensus 141 ~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~-iPViAAGGI~dg~~i~AAlalGA~gVq~ 212 (336)
T COG2070 141 LKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDG-IPVIAAGGIADGRGIAAALALGADGVQM 212 (336)
T ss_pred HHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcC-CCEEEecCccChHHHHHHHHhccHHHHh
Confidence 334467899999888733322 22345666666665532 577776 689999999999999997643
No 302
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=30.82 E-value=1.3e+02 Score=27.10 Aligned_cols=63 Identities=11% Similarity=0.039 Sum_probs=40.7
Q ss_pred HHHHHHhCCCceEEeCCCCCCCCH--HHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEee
Q psy14115 45 CAHQMVEKDVNGFAVGGLSGGEAK--EDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFD 111 (319)
Q Consensus 45 s~~~l~~~~~~G~aIgGl~~ge~~--~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD 111 (319)
-++.+.+.+.+...+... ....+ ++..++++.+.+.. +. ..+.++.+|.++..+..+|+|.+-
T Consensus 84 ~~~~a~~aGad~I~~~~~-~~~~p~~~~~~~~i~~~~~~g--~~-~iiv~v~t~~ea~~a~~~G~d~i~ 148 (219)
T cd04729 84 EVDALAAAGADIIALDAT-DRPRPDGETLAELIKRIHEEY--NC-LLMADISTLEEALNAAKLGFDIIG 148 (219)
T ss_pred HHHHHHHcCCCEEEEeCC-CCCCCCCcCHHHHHHHHHHHh--CC-eEEEECCCHHHHHHHHHcCCCEEE
Confidence 446666778886655432 21111 25556666665544 33 345588999999999999999984
No 303
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=30.53 E-value=1e+02 Score=29.76 Aligned_cols=98 Identities=14% Similarity=0.160 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCceeeeccCC-----------CCHHHHHHHHHHHHhCCCceEEe--CCCC---CCC
Q psy14115 3 VAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGG-----------LDEALRKDCAHQMVEKDVNGFAV--GGLS---GGE 66 (319)
Q Consensus 3 ~~~av~RT~rWl~r~~~~~~~~~~q~lfgiVqGG-----------~~~dlR~~s~~~l~~~~~~G~aI--gGl~---~ge 66 (319)
.++-+++|.+..+.+-..--.. ..-.|.|-|. .+| .++.+.+.+.+++-+|+ |... .++
T Consensus 113 ~eeNi~~T~~vve~Ah~~gv~V--EaElG~vgg~ed~~~~~~~~yT~p---eea~~Fv~~TgvD~LAvaiGt~HG~Y~~~ 187 (286)
T PRK08610 113 FEENVATTKKVVEYAHEKGVSV--EAELGTVGGQEDDVVADGIIYADP---KECQELVEKTGIDALAPALGSVHGPYKGE 187 (286)
T ss_pred HHHHHHHHHHHHHHHHHcCCEE--EEEEeccCCccCCCCCcccccCCH---HHHHHHHHHHCCCEEEeeccccccccCCC
Confidence 3566778888777764321100 1122333221 233 34445555668887774 4332 222
Q ss_pred CHHHHHHHHHHhhcCCCCCCCeEecCC-CChHH-HHHHHHcCCc
Q psy14115 67 AKEDFWYSVLVSINCLPKDKPRYVMGI-GFAVD-LLICCALGAD 108 (319)
Q Consensus 67 ~~~e~~~ii~~~~~~LP~dkPr~l~Gv-g~P~~-Il~~V~lGvD 108 (319)
+ .--++.++.+.+.+ +.|.-+.|- |.|.+ +..+|.+||-
T Consensus 188 p-~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~GI~ 228 (286)
T PRK08610 188 P-KLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIPFGTA 228 (286)
T ss_pred C-CCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHCCCe
Confidence 2 22244555555554 478888875 88855 7789999983
No 304
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=30.39 E-value=3.2e+02 Score=25.94 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=45.6
Q ss_pred HHHHHHHhCCCceEEeCCC---------CC---------CCCHHH----HHHHHHHhhcCCCCCCCeEe-cCCC------
Q psy14115 44 DCAHQMVEKDVNGFAVGGL---------SG---------GEAKED----FWYSVLVSINCLPKDKPRYV-MGIG------ 94 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl---------~~---------ge~~~e----~~~ii~~~~~~LP~dkPr~l-~Gvg------ 94 (319)
++++...+.+++|+-|-+- +. |.+.+. ..++|+.+++.++++.|..+ +...
T Consensus 145 ~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g 224 (327)
T cd02803 145 AAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGG 224 (327)
T ss_pred HHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCC
Confidence 4566666789999887653 11 222222 36788889999988877654 3321
Q ss_pred -ChHHHH----HHHHcCCcEeecCCc
Q psy14115 95 -FAVDLL----ICCALGADMFDCVFP 115 (319)
Q Consensus 95 -~P~~Il----~~V~lGvD~FD~~~P 115 (319)
++.+.+ .+...|+|.++.+-.
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g 250 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGG 250 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 345533 455789999987643
No 305
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=30.35 E-value=2e+02 Score=29.82 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=48.6
Q ss_pred HHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEee
Q psy14115 44 DCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFD 111 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD 111 (319)
+-++.|.+.+++-.++.-... ......++|+.+.+..| +.+...=.+++++....++.+|+|.+=
T Consensus 230 ~~a~~Lv~aGvd~i~~D~a~~--~~~~~~~~i~~ik~~~p-~~~v~agnv~t~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 230 AKARALLEAGVDVLVVDTAHG--HQEKMLEALRAVRALDP-GVPIVAGNVVTAEGTRDLVEAGADIVK 294 (479)
T ss_pred HHHHHHHHhCCCEEEEeccCC--ccHHHHHHHHHHHHHCC-CCeEEeeccCCHHHHHHHHHcCCCEEE
Confidence 456667778888888875432 24567788888888887 444444358999999999999999984
No 306
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=30.35 E-value=1e+02 Score=28.75 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcE
Q psy14115 43 KDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADM 109 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~ 109 (319)
.+-++.+.+.+.+++.||| +.|.+.+.+.++++.+... ..|..++ .|+|.. |.-|+|-
T Consensus 17 ~~~~~~~~~~gtdai~vGG-S~~vt~~~~~~~v~~ik~~---~lPvilf-p~~~~~----i~~~aDa 74 (223)
T TIGR01768 17 DEIAKAAAESGTDAILIGG-SQGVTYEKTDTLIEALRRY---GLPIILF-PSNPTN----VSRDADA 74 (223)
T ss_pred HHHHHHHHhcCCCEEEEcC-CCcccHHHHHHHHHHHhcc---CCCEEEe-CCCccc----cCcCCCE
Confidence 4567788889999999999 5667778888888877752 2788873 366644 3466773
No 307
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=30.30 E-value=51 Score=28.75 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhCC
Q psy14115 180 NIAFQMRLMREIRESIKEQRFPQYVKQYMKDAYP 213 (319)
Q Consensus 180 Nl~~~~~l~~~iR~aI~~g~f~~~v~~f~~~~~~ 213 (319)
|-..=..+=+.||+.|.+|.=++-+.+|+...|+
T Consensus 55 ~a~~A~dmR~~I~~~l~~G~s~~eI~~~~v~rYG 88 (148)
T PF03918_consen 55 NAPIARDMRREIREMLAEGKSDEEIIDYFVERYG 88 (148)
T ss_dssp -SHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 3344556677899999999888877777766554
No 308
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=30.22 E-value=1.3e+02 Score=29.01 Aligned_cols=101 Identities=16% Similarity=0.128 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCceeeeccCCCCH-------H---HHHHHHHHHHhCCCceEEe--CCCCCC--CCHH
Q psy14115 4 AIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDE-------A---LRKDCAHQMVEKDVNGFAV--GGLSGG--EAKE 69 (319)
Q Consensus 4 ~~av~RT~rWl~r~~~~~~~~~~q~lfgiVqGG~~~-------d---lR~~s~~~l~~~~~~G~aI--gGl~~g--e~~~ 69 (319)
++-+++|.+..+.|-...-.. ..-.|.|-|+-+. . --.++.+...+.+++-+|+ |...+. ..+.
T Consensus 111 eeNi~~T~evv~~Ah~~gv~V--EaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~ 188 (286)
T PRK12738 111 AENVKLVKSVVDFCHSQDCSV--EAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPK 188 (286)
T ss_pred HHHHHHHHHHHHHHHHcCCeE--EEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCc
Confidence 566778888777764322100 1123334322111 0 1234555555678887774 433221 1122
Q ss_pred HHHHHHHHhhcCCCCCCCeEecCC-CChHH-HHHHHHcCCc
Q psy14115 70 DFWYSVLVSINCLPKDKPRYVMGI-GFAVD-LLICCALGAD 108 (319)
Q Consensus 70 e~~~ii~~~~~~LP~dkPr~l~Gv-g~P~~-Il~~V~lGvD 108 (319)
--++.++.+.+.+ +.|.-+.|- |.|.+ +..++.+||-
T Consensus 189 Ldfd~l~~I~~~~--~vPLVLHGgSG~~~e~~~kai~~GI~ 227 (286)
T PRK12738 189 IDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVT 227 (286)
T ss_pred CCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCe
Confidence 3355566566555 588888875 77765 6689999873
No 309
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=30.20 E-value=1.8e+02 Score=27.66 Aligned_cols=35 Identities=34% Similarity=0.322 Sum_probs=27.0
Q ss_pred CCCeEe-cCCCChHHHHHHHHcCCcEeecCCccccC
Q psy14115 85 DKPRYV-MGIGFAVDLLICCALGADMFDCVFPTRTA 119 (319)
Q Consensus 85 dkPr~l-~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~A 119 (319)
+.|.++ =|+++|+|.-.+.++|+|-+=+......|
T Consensus 175 ~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a 210 (248)
T cd04728 175 DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKA 210 (248)
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCC
Confidence 467776 37999999999999999987665554443
No 310
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=30.04 E-value=2.2e+02 Score=28.12 Aligned_cols=75 Identities=17% Similarity=0.149 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEe-cCCCChHHHHHHHHcCCcEeecCCc
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYV-MGIGFAVDLLICCALGADMFDCVFP 115 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l-~Gvg~P~~Il~~V~lGvD~FD~~~P 115 (319)
+..+...+-++.|.+.+++-.-+|-.+.++.. ++.+..+.+..|. +++. ++-..+.+|-.++..|+|.+-...|
T Consensus 20 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~---~e~i~~i~~~~~~--~~i~~~~r~~~~di~~a~~~g~~~i~i~~~ 94 (365)
T TIGR02660 20 FTAAEKLAIARALDEAGVDELEVGIPAMGEEE---RAVIRAIVALGLP--ARLMAWCRARDADIEAAARCGVDAVHISIP 94 (365)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHH---HHHHHHHHHcCCC--cEEEEEcCCCHHHHHHHHcCCcCEEEEEEc
Confidence 77888999999999999999988755443322 3444555554443 4554 4668899999999999997766665
Q ss_pred c
Q psy14115 116 T 116 (319)
Q Consensus 116 t 116 (319)
+
T Consensus 95 ~ 95 (365)
T TIGR02660 95 V 95 (365)
T ss_pred c
Confidence 4
No 311
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=30.03 E-value=90 Score=32.28 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeCCC-CCCCCHHHHHHHHHHh
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVGGL-SGGEAKEDFWYSVLVS 78 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIgGl-~~ge~~~e~~~ii~~~ 78 (319)
-+.+.|.++.+...+.|++.+.+|++ +.++..+|...++.+.
T Consensus 216 ~~y~~Rl~t~~rA~~aGi~~Vg~G~L~GLge~~~E~~~l~~hl 258 (469)
T PRK09613 216 SDYDWRLTAMDRAMEAGIDDVGIGVLFGLYDYKFEVLGLLMHA 258 (469)
T ss_pred CCHHHHHHHHHHHHHcCCCeeCeEEEEcCCCCHHHHHHHHHHH
Confidence 46789999999999999997777776 4577778877765544
No 312
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=29.95 E-value=2.6e+02 Score=27.84 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=45.4
Q ss_pred HHHHHHHhCCCceEEeCCCC---------C---------CCCHHH----HHHHHHHhhcCCCCCCCeEe-cCC-------
Q psy14115 44 DCAHQMVEKDVNGFAVGGLS---------G---------GEAKED----FWYSVLVSINCLPKDKPRYV-MGI------- 93 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl~---------~---------ge~~~e----~~~ii~~~~~~LP~dkPr~l-~Gv------- 93 (319)
++++...+.+|+|+-|-+-. . |-+.+. ..++|+.+++..+++.|.-+ ++.
T Consensus 148 ~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~ 227 (361)
T cd04747 148 RAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYT 227 (361)
T ss_pred HHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccc
Confidence 35555566799999877643 1 223222 35788888888888877554 221
Q ss_pred ----CChHHHHHH----HHcCCcEeecCC
Q psy14115 94 ----GFAVDLLIC----CALGADMFDCVF 114 (319)
Q Consensus 94 ----g~P~~Il~~----V~lGvD~FD~~~ 114 (319)
-+|.+.+.. .+.|+|+++.+-
T Consensus 228 ~~~g~~~~e~~~~~~~l~~~gvd~i~vs~ 256 (361)
T cd04747 228 ARLADTPDELEALLAPLVDAGVDIFHCST 256 (361)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 256655443 578999998854
No 313
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=29.83 E-value=1.7e+02 Score=27.29 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=43.8
Q ss_pred HHHHHHHHhCCCceEEeCCCCC-CCCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHH-HcCCcEee
Q psy14115 43 KDCAHQMVEKDVNGFAVGGLSG-GEAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICC-ALGADMFD 111 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgGl~~-ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V-~lGvD~FD 111 (319)
.+-++.+.+.+++.+.+-+... |....--++.++.+.+.. +.|.+.- |+++++++..+. ..|+|-+-
T Consensus 155 ~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 155 LELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNAL--KIPLIALGGAGSLDDIVEAILNLGADAAA 224 (258)
T ss_pred HHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHHCCCCEEE
Confidence 4556677788888888775532 111111244444444443 4788877 589999999999 79999663
No 314
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=29.81 E-value=1.7e+02 Score=26.23 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=41.3
Q ss_pred HHHHHHHhCCCceEEeCCCCC-CCCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcC-CcEee
Q psy14115 44 DCAHQMVEKDVNGFAVGGLSG-GEAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALG-ADMFD 111 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl~~-ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lG-vD~FD 111 (319)
+-++.+.+.+++.+.+-+... |....--+++++.+.+..| .|.+.- |+.+++|+..+.+.| +|-+=
T Consensus 150 e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~--ipvia~GGi~~~~di~~~~~~g~~~gv~ 218 (233)
T PRK00748 150 DLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAAAVP--IPVIASGGVSSLDDIKALKGLGAVEGVI 218 (233)
T ss_pred HHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCC--CCEEEeCCCCCHHHHHHHHHcCCccEEE
Confidence 445666677787766654421 1111111444555555544 777775 689999999999998 88653
No 315
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=29.77 E-value=1.1e+02 Score=29.51 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=38.8
Q ss_pred HHHHHHHhCCCceEEe--CCCC---CCCCHHHHHHHHHHhhcCCCCCCCeEecCC-CChHH-HHHHHHcCCc
Q psy14115 44 DCAHQMVEKDVNGFAV--GGLS---GGEAKEDFWYSVLVSINCLPKDKPRYVMGI-GFAVD-LLICCALGAD 108 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aI--gGl~---~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gv-g~P~~-Il~~V~lGvD 108 (319)
++.+.+.+.+++-+|+ |... .++ +.--++.++.+.+.+ +.|.-+.|- |.|.+ +..++.+||-
T Consensus 159 ea~~Fv~~TgvD~LAvaiGt~HG~y~~~-p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~Gi~ 227 (284)
T PRK09195 159 QAREFVEATGIDSLAVAIGTAHGMYKGE-PKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIKLGIC 227 (284)
T ss_pred HHHHHHHHHCcCEEeeccCccccccCCC-CcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCe
Confidence 4555555678887774 4332 232 233345566666655 478888876 87766 7789999983
No 316
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=29.76 E-value=3.7e+02 Score=27.81 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=48.6
Q ss_pred HHHHHHHhCCCceEEeCCCCC-----------CCC-HHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcE-
Q psy14115 44 DCAHQMVEKDVNGFAVGGLSG-----------GEA-KEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADM- 109 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl~~-----------ge~-~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~- 109 (319)
+.++.|.+.+++++-+|+-++ |-+ ..-..++.+...+. +.|...- |+-+|.||..++++|.|.
T Consensus 278 ~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~---~~~viadGgi~~~~di~kala~GA~~v 354 (475)
T TIGR01303 278 EGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKL---GGHVWADGGVRHPRDVALALAAGASNV 354 (475)
T ss_pred HHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHc---CCcEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 356777788999998876321 111 11122232222332 5777776 589999999999999995
Q ss_pred -eecCCccccCcCCccee
Q psy14115 110 -FDCVFPTRTARFGSALV 126 (319)
Q Consensus 110 -FD~~~Ptr~Ar~G~alt 126 (319)
+-+.+.-..---|-.+.
T Consensus 355 m~g~~~ag~~espg~~~~ 372 (475)
T TIGR01303 355 MVGSWFAGTYESPGDLMR 372 (475)
T ss_pred eechhhcccccCCCceEE
Confidence 45555544433344443
No 317
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=29.73 E-value=97 Score=30.75 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=40.5
Q ss_pred CceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCC-CCCCCHHHHHHHHHHhhcCC-CCCCCeEecC--CCChH
Q psy14115 27 QNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGL-SGGEAKEDFWYSVLVSINCL-PKDKPRYVMG--IGFAV 97 (319)
Q Consensus 27 q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl-~~ge~~~e~~~ii~~~~~~L-P~dkPr~l~G--vg~P~ 97 (319)
+..|.-|..+-.-+-|...++.+.+.|+.- -.||+ +.||+.++..+++....+.- |..-|...+- -|||.
T Consensus 166 ~~~y~~I~tt~t~edR~~tl~~vk~~Gi~v-csGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPl 239 (335)
T COG0502 166 PEFYENIITTRTYEDRLNTLENVREAGIEV-CSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPIPGTPL 239 (335)
T ss_pred HHHHcccCCCCCHHHHHHHHHHHHHcCCcc-ccceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCcc
Confidence 456666666666677777777777665421 12222 34677777777666666655 5555655432 25554
No 318
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=29.53 E-value=3.6e+02 Score=26.46 Aligned_cols=65 Identities=6% Similarity=-0.114 Sum_probs=47.7
Q ss_pred CCCceEEeCCC--CCC---CCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccccCc
Q psy14115 52 KDVNGFAVGGL--SGG---EAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTAR 120 (319)
Q Consensus 52 ~~~~G~aIgGl--~~g---e~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar 120 (319)
.+++...+..+ ++. .+++++.+.+..+ +...|.-..|==++.+|..-...|||.+...++|..++
T Consensus 228 agaDiImLDnm~~~~~~~~~~~e~l~~av~~~----~~~~~lEaSGGIt~~ni~~yA~tGVD~Is~Galthsa~ 297 (308)
T PLN02716 228 TSLTRVMLDNMVVPLENGDVDVSMLKEAVELI----NGRFETEASGNVTLDTVHKIGQTGVTYISSGALTHSVK 297 (308)
T ss_pred CCCCEEEeCCCcccccccCCCHHHHHHHHHhh----CCCceEEEECCCCHHHHHHHHHcCCCEEEeCccccCCC
Confidence 67888888887 322 2567777776643 33345445665589999999999999999999988654
No 319
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=29.52 E-value=2.9e+02 Score=26.58 Aligned_cols=66 Identities=8% Similarity=-0.043 Sum_probs=44.9
Q ss_pred HHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCcccc
Q psy14115 48 QMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRT 118 (319)
Q Consensus 48 ~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~ 118 (319)
+..+.+++...+.++ +++++.+.++.+.. ..++...-+.|==+|.++..-...|||++-...|+..
T Consensus 203 ea~~~GaDiI~lDn~----~~e~l~~~v~~l~~-~~~~~~leasGGI~~~ni~~ya~~GvD~is~gal~~a 268 (277)
T TIGR01334 203 TVLQASPDILQLDKF----TPQQLHHLHERLKF-FDHIPTLAAAGGINPENIADYIEAGIDLFITSAPYYA 268 (277)
T ss_pred HHHHcCcCEEEECCC----CHHHHHHHHHHHhc-cCCCEEEEEECCCCHHHHHHHHhcCCCEEEeCcceec
Confidence 334567888888864 67788777776432 1222222234544899999999999999988888643
No 320
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=29.48 E-value=2.5e+02 Score=26.01 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEe-cCCCChHHHHHHHHcCCcEeecCC
Q psy14115 36 GLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYV-MGIGFAVDLLICCALGADMFDCVF 114 (319)
Q Consensus 36 G~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l-~Gvg~P~~Il~~V~lGvD~FD~~~ 114 (319)
.+..+...+-++.|.+.+++-.-+|-...+++. ++.+..+.+..+ ..++. +....+.+|-.+...|+|.+-...
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~---~e~~~~l~~~~~--~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~ 90 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGIPAMGEEE---REAIRAIVALGL--PARLIVWCRAVKEDIEAALRCGVTAVHISI 90 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHH---HHHHHHHHhcCC--CCEEEEeccCCHHHHHHHHhCCcCEEEEEE
Confidence 477888999999999999999988755443332 234444444333 34554 344789999999999999876655
Q ss_pred cc
Q psy14115 115 PT 116 (319)
Q Consensus 115 Pt 116 (319)
|+
T Consensus 91 ~~ 92 (259)
T cd07939 91 PV 92 (259)
T ss_pred ec
Confidence 44
No 321
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=29.40 E-value=2.4e+02 Score=26.29 Aligned_cols=75 Identities=13% Similarity=0.081 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEe-cCCCChHHHHHHHHcC----CcEe
Q psy14115 36 GLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYV-MGIGFAVDLLICCALG----ADMF 110 (319)
Q Consensus 36 G~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l-~Gvg~P~~Il~~V~lG----vD~F 110 (319)
.+..+...+.++.|.+.+++-.-+|.++.++ .+ ++.++.+.+..|. .++. +.-+.+.++-.+...| +|.+
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~--~~-~~~~~~l~~~~~~--~~~~~l~r~~~~~v~~a~~~~~~~~~~~i 90 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPAASP--GD-FEAVKRIAREVLN--AEICGLARAVKKDIDAAAEALKPAKVDRI 90 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCH--HH-HHHHHHHHHhCCC--CEEEEEccCCHhhHHHHHHhCCCCCCCEE
Confidence 3678889999999999999999998765333 33 3566666665652 4444 3447899999999999 8876
Q ss_pred ecCCc
Q psy14115 111 DCVFP 115 (319)
Q Consensus 111 D~~~P 115 (319)
....|
T Consensus 91 ~i~~~ 95 (268)
T cd07940 91 HTFIA 95 (268)
T ss_pred EEEec
Confidence 55544
No 322
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=29.38 E-value=2.7e+02 Score=25.34 Aligned_cols=78 Identities=14% Similarity=0.177 Sum_probs=56.0
Q ss_pred CceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCC---ChHHHHHHH
Q psy14115 27 QNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIG---FAVDLLICC 103 (319)
Q Consensus 27 q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg---~P~~Il~~V 103 (319)
+.+++|+-+ .+++.=.+.++.+.+-++.-+-+---+ + .-.+.|.......|. ....|+| ++.++-.++
T Consensus 10 ~~~~~v~r~-~~~~~~~~~~~a~~~gGi~~iEvt~~~--~---~~~~~i~~l~~~~~~---~~~iGaGTV~~~~~~~~a~ 80 (206)
T PRK09140 10 LPLIAILRG-ITPDEALAHVGALIEAGFRAIEIPLNS--P---DPFDSIAALVKALGD---RALIGAGTVLSPEQVDRLA 80 (206)
T ss_pred CCEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEeCCC--c---cHHHHHHHHHHHcCC---CcEEeEEecCCHHHHHHHH
Confidence 569999997 777777778999999998888776311 1 223355555555552 2556877 488999999
Q ss_pred HcCCcEeecC
Q psy14115 104 ALGADMFDCV 113 (319)
Q Consensus 104 ~lGvD~FD~~ 113 (319)
++|.|.+-+.
T Consensus 81 ~aGA~fivsp 90 (206)
T PRK09140 81 DAGGRLIVTP 90 (206)
T ss_pred HcCCCEEECC
Confidence 9999987663
No 323
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=29.33 E-value=64 Score=29.78 Aligned_cols=36 Identities=8% Similarity=-0.169 Sum_probs=32.3
Q ss_pred CCCeEecCCCChHHHHHHHHcCCcEeecCCccccCc
Q psy14115 85 DKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTAR 120 (319)
Q Consensus 85 dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar 120 (319)
.++.++-++.+|.++-.++.+|||.+-+.+|...+.
T Consensus 209 g~~v~~WTvn~~~~~~~l~~~GVdgIiTD~p~~~~~ 244 (249)
T PRK09454 209 GLRILVYTVNDPARARELLRWGVDCICTDRIDLIGP 244 (249)
T ss_pred CCEEEEEeCCCHHHHHHHHHcCCCEEEeCChHhcCc
Confidence 567888899999999999999999999999987654
No 324
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=29.17 E-value=2.6e+02 Score=27.15 Aligned_cols=73 Identities=12% Similarity=0.073 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHhCCCceEEe-CCCCCCCCHHHHHHHHHHhhcCCCCCCCeEe------------cCCCChHHHHHHH
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAV-GGLSGGEAKEDFWYSVLVSINCLPKDKPRYV------------MGIGFAVDLLICC 103 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aI-gGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l------------~Gvg~P~~Il~~V 103 (319)
.++|.-.+.++++.+.++.-+.| ||.....+.+.+.++++.+.+..|. ..... .|.-+++.+..+-
T Consensus 70 ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~-i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lk 148 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPG-MHIHAFSPMEVYYGARNSGLSVEEALKRLK 148 (343)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCC-ceEEecCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34455555666666778776766 4544444566678888888777653 22222 4666788888999
Q ss_pred HcCCcEe
Q psy14115 104 ALGADMF 110 (319)
Q Consensus 104 ~lGvD~F 110 (319)
++|+|.+
T Consensus 149 eAGl~~i 155 (343)
T TIGR03551 149 EAGLDSM 155 (343)
T ss_pred HhCcccc
Confidence 9999976
No 325
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=28.61 E-value=4e+02 Score=24.84 Aligned_cols=83 Identities=17% Similarity=0.056 Sum_probs=56.1
Q ss_pred ceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcC
Q psy14115 28 NIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALG 106 (319)
Q Consensus 28 ~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lG 106 (319)
+++.=+-.|....--.+-++.+.+.+++++.|.+.-.|. +.--|+.|..+.+.++ +.|..-. ||-++++...+...|
T Consensus 136 PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~-~~a~~~~I~~i~~~~~-~ipIIgNGgI~s~eda~e~l~~G 213 (231)
T TIGR00736 136 PIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYPGK-PYADMDLLKILSEEFN-DKIIIGNNSIDDIESAKEMLKAG 213 (231)
T ss_pred cEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCCCC-chhhHHHHHHHHHhcC-CCcEEEECCcCCHHHHHHHHHhC
Confidence 455555555443333456677788899999997655443 2234677777777663 3666655 467999999999999
Q ss_pred CcEeec
Q psy14115 107 ADMFDC 112 (319)
Q Consensus 107 vD~FD~ 112 (319)
+|.+=.
T Consensus 214 Ad~Vmv 219 (231)
T TIGR00736 214 ADFVSV 219 (231)
T ss_pred CCeEEE
Confidence 997644
No 326
>PRK03739 2-isopropylmalate synthase; Validated
Probab=28.36 E-value=7.3e+02 Score=26.21 Aligned_cols=89 Identities=8% Similarity=0.009 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHh---CCCce---EEeCCCCCCCCHHHHHHHHHHhhcCCCC--CCC--eEecC-CCC-hHHHHHHHH
Q psy14115 37 LDEALRKDCAHQMVE---KDVNG---FAVGGLSGGEAKEDFWYSVLVSINCLPK--DKP--RYVMG-IGF-AVDLLICCA 104 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~---~~~~G---~aIgGl~~ge~~~e~~~ii~~~~~~LP~--dkP--r~l~G-vg~-P~~Il~~V~ 104 (319)
.+++.-.+.++.+.+ .+.+. +.+....+-..+.++.+++..+.+.+|. +.| .|... .|. -.+.+.++.
T Consensus 182 ~d~~~l~~~~~~a~~~~~ag~~~~~~i~l~DTvG~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvANslaAv~ 261 (552)
T PRK03739 182 TELDFALEVCDAVIDVWQPTPERKVILNLPATVEMSTPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAAAELALM 261 (552)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCceeEEEeccCCcCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHHHHHHHH
Confidence 467766777777654 34443 6677766667899999999999888873 233 23331 233 347889999
Q ss_pred cCCcEeecCCccccCcCCcce
Q psy14115 105 LGADMFDCVFPTRTARFGSAL 125 (319)
Q Consensus 105 lGvD~FD~~~Ptr~Ar~G~al 125 (319)
.|++.||+..--.-.|.|.+=
T Consensus 262 aGa~~v~gtvnG~GERaGNa~ 282 (552)
T PRK03739 262 AGADRVEGCLFGNGERTGNVD 282 (552)
T ss_pred hCCCEEEeeCCcCcccccChh
Confidence 999999988665555566543
No 327
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=28.13 E-value=4.6e+02 Score=25.45 Aligned_cols=46 Identities=7% Similarity=-0.211 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHhhcCCCCCCCeEecCCC--ChHHHHHHHHcCCcEeec
Q psy14115 67 AKEDFWYSVLVSINCLPKDKPRYVMGIG--FAVDLLICCALGADMFDC 112 (319)
Q Consensus 67 ~~~e~~~ii~~~~~~LP~dkPr~l~Gvg--~P~~Il~~V~lGvD~FD~ 112 (319)
+.++..++|..++-.+|...+++--|-. .|..-..+...|+|-|+.
T Consensus 253 ~~~~~lr~iAv~Rl~lp~~~~~i~a~~~~l~~~~~~~~l~~Gan~~~g 300 (343)
T TIGR03551 253 TGREDLKVHAIARILLHGLIDNIQASWVKLGKKLAQVALRCGANDLGG 300 (343)
T ss_pred CHHHHHHHHHHHHHhCCCcccCeeccccccCHHHHHHHHhCCCccCCc
Confidence 3455555555555555543333332210 122234455555555553
No 328
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=27.71 E-value=1.8e+02 Score=24.20 Aligned_cols=62 Identities=24% Similarity=0.210 Sum_probs=38.3
Q ss_pred HHhCCCceEEeCCCCCCCCHHHH----HHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEeec
Q psy14115 49 MVEKDVNGFAVGGLSGGEAKEDF----WYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFDC 112 (319)
Q Consensus 49 l~~~~~~G~aIgGl~~ge~~~e~----~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~ 112 (319)
+.+.+++.+.+++...+...... ...+...... .+.|.... |+.+|.++..+++.|+|.+..
T Consensus 132 ~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 132 AEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG--SKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred HHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc--CCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 45667888887765332221111 1222222222 25787776 588899999999999998864
No 329
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=27.52 E-value=1.1e+02 Score=27.91 Aligned_cols=58 Identities=9% Similarity=0.115 Sum_probs=37.9
Q ss_pred HHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCcc
Q psy14115 46 AHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPT 116 (319)
Q Consensus 46 ~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Pt 116 (319)
++...+.+.++...++.. . ++++.+. .....+++|+-+|.++..+..+|+|.+=. ||+
T Consensus 76 ~~~a~~aGA~fivsp~~~----~----~v~~~~~----~~~~~~~~G~~t~~E~~~A~~~Gad~vk~-Fpa 133 (206)
T PRK09140 76 VDRLADAGGRLIVTPNTD----P----EVIRRAV----ALGMVVMPGVATPTEAFAALRAGAQALKL-FPA 133 (206)
T ss_pred HHHHHHcCCCEEECCCCC----H----HHHHHHH----HCCCcEEcccCCHHHHHHHHHcCCCEEEE-CCC
Confidence 344445677776655532 1 2333333 12345678999999999999999998863 774
No 330
>PLN02389 biotin synthase
Probab=27.22 E-value=2.7e+02 Score=27.85 Aligned_cols=77 Identities=18% Similarity=0.067 Sum_probs=47.7
Q ss_pred ceeeeccCCCCHHHHHHHHHHHHhCCCce--EEeCCCCCCCCHHHHHHHHHHhhcC--CCC-----------CCCeEecC
Q psy14115 28 NIFPIVQGGLDEALRKDCAHQMVEKDVNG--FAVGGLSGGEAKEDFWYSVLVSINC--LPK-----------DKPRYVMG 92 (319)
Q Consensus 28 ~lfgiVqGG~~~dlR~~s~~~l~~~~~~G--~aIgGl~~ge~~~e~~~ii~~~~~~--LP~-----------dkPr~l~G 92 (319)
..|.-+.++...+.|.+.++.+.+.++.- -.|-|+ ||+.+++.+.+..+.+. -|. +.|.+-..
T Consensus 201 ~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGl--gEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~ 278 (379)
T PLN02389 201 EYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGL--GEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQK 278 (379)
T ss_pred HHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECC--CCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCC
Confidence 36665655668888999999998887531 224444 78999888887766543 122 23333223
Q ss_pred CCChHHHHHHHHcC
Q psy14115 93 IGFAVDLLICCALG 106 (319)
Q Consensus 93 vg~P~~Il~~V~lG 106 (319)
..+|.+++..|++-
T Consensus 279 ~~s~~e~lr~iAi~ 292 (379)
T PLN02389 279 PVEIWEMVRMIATA 292 (379)
T ss_pred CCCHHHHHHHHHHH
Confidence 35666766666553
No 331
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.16 E-value=70 Score=29.41 Aligned_cols=30 Identities=17% Similarity=0.391 Sum_probs=25.7
Q ss_pred CCeEecCCCChHHHHHHHHcCCcEeecCCcc
Q psy14115 86 KPRYVMGIGFAVDLLICCALGADMFDCVFPT 116 (319)
Q Consensus 86 kPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Pt 116 (319)
.-.+++|+.+|.++..+.+.|+|.+=. ||.
T Consensus 109 ~i~~iPG~~T~~E~~~A~~~Gad~vkl-FPa 138 (213)
T PRK06552 109 QIPYLPGCMTVTEIVTALEAGSEIVKL-FPG 138 (213)
T ss_pred CCCEECCcCCHHHHHHHHHcCCCEEEE-CCc
Confidence 345788999999999999999999874 783
No 332
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=27.14 E-value=2.2e+02 Score=29.48 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=52.9
Q ss_pred CCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCC--------CCCCHHHHHHHHHHhhcCCCCCCCeEe-cC---
Q psy14115 25 TTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLS--------GGEAKEDFWYSVLVSINCLPKDKPRYV-MG--- 92 (319)
Q Consensus 25 ~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~--------~ge~~~e~~~ii~~~~~~LP~dkPr~l-~G--- 92 (319)
..|++++. ....+-....++.|.+.+++-+-++|-. ..+++ |+.+..+.+.+|.-+...+ -|
T Consensus 13 G~Qs~~~~---~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p---~e~l~~l~~~~~~~~l~~l~r~~N~ 86 (467)
T PRK14041 13 GHQSLIAT---RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENP---WERLKEIRKRLKNTKIQMLLRGQNL 86 (467)
T ss_pred cccCcCCc---cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCH---HHHHHHHHHhCCCCEEEEEeccccc
Confidence 35776654 3677888889999999999888876532 12333 5555555666664332211 23
Q ss_pred CC---ChHH-----HHHHHHcCCcEeecCC
Q psy14115 93 IG---FAVD-----LLICCALGADMFDCVF 114 (319)
Q Consensus 93 vg---~P~~-----Il~~V~lGvD~FD~~~ 114 (319)
+| .|.| |-.+++.|+|+|-...
T Consensus 87 ~G~~~~~dDvv~~fv~~A~~~Gvd~irif~ 116 (467)
T PRK14041 87 VGYRHYADDVVELFVKKVAEYGLDIIRIFD 116 (467)
T ss_pred cCcccccchhhHHHHHHHHHCCcCEEEEEE
Confidence 23 5888 6778999999754433
No 333
>PRK07695 transcriptional regulator TenI; Provisional
Probab=27.08 E-value=2.8e+02 Score=24.55 Aligned_cols=63 Identities=16% Similarity=0.062 Sum_probs=39.8
Q ss_pred HHHHHhCCCceEEeCCCCCCCCHHH----HHHHHHHhhcCCCCCCCeEecC-CCChHHHHHHHHcCCcEee
Q psy14115 46 AHQMVEKDVNGFAVGGLSGGEAKED----FWYSVLVSINCLPKDKPRYVMG-IGFAVDLLICCALGADMFD 111 (319)
Q Consensus 46 ~~~l~~~~~~G~aIgGl~~ge~~~e----~~~ii~~~~~~LP~dkPr~l~G-vg~P~~Il~~V~lGvD~FD 111 (319)
+.+..+.+++.+.+|-+....++.. -++.+..+.+.+ +.|.+..| + +|.++..+...|+|.+-
T Consensus 108 a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~--~ipvia~GGI-~~~~~~~~~~~Ga~gva 175 (201)
T PRK07695 108 AIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL--SIPVIAIGGI-TPENTRDVLAAGVSGIA 175 (201)
T ss_pred HHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 3445567888877664322111110 134444444444 48899886 6 99999999999999764
No 334
>PRK00208 thiG thiazole synthase; Reviewed
Probab=26.91 E-value=2.2e+02 Score=27.14 Aligned_cols=37 Identities=32% Similarity=0.255 Sum_probs=27.7
Q ss_pred CCCeEe-cCCCChHHHHHHHHcCCcEeecCCccccCcC
Q psy14115 85 DKPRYV-MGIGFAVDLLICCALGADMFDCVFPTRTARF 121 (319)
Q Consensus 85 dkPr~l-~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~Ar~ 121 (319)
+-|.++ =|+++|+|...+.++|+|-+=+......|.+
T Consensus 175 ~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~d 212 (250)
T PRK00208 175 DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGD 212 (250)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCC
Confidence 456766 4899999999999999998766555444333
No 335
>PRK14847 hypothetical protein; Provisional
Probab=26.68 E-value=3.5e+02 Score=26.85 Aligned_cols=87 Identities=7% Similarity=0.061 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhC------CCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCC-CC------hHHHHHHH
Q psy14115 37 LDEALRKDCAHQMVEK------DVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGI-GF------AVDLLICC 103 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~------~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gv-g~------P~~Il~~V 103 (319)
.+++.-.+.++...+. +..-+.+....+...+.++.+.|..+.+.+|. .|..-+|+ ++ -.+.+.++
T Consensus 184 ad~dfL~~~~~~a~~~~ga~r~~a~~i~l~DTVG~~~P~~~~~~i~~l~~~~~~-~~~v~i~~H~HnD~GlA~ANslaA~ 262 (333)
T PRK14847 184 AELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTANVYADQIEWMHRSLAR-RDCIVLSVHPHNDRGTAVAAAELAV 262 (333)
T ss_pred CCHHHHHHHHHHHHHHhCCCccCCcEEEeCCccccCCHHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCchHHHHHHHHH
Q ss_pred HcCCcEeecCCccccCcCCcc
Q psy14115 104 ALGADMFDCVFPTRTARFGSA 124 (319)
Q Consensus 104 ~lGvD~FD~~~Ptr~Ar~G~a 124 (319)
..|+|.||++.--.-.|.|.+
T Consensus 263 ~aGa~~i~~tv~G~GERaGNa 283 (333)
T PRK14847 263 LAGAERIEGCLFGNGERTGNV 283 (333)
T ss_pred HhCCCEEEeeCCcCCccccch
No 336
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=26.66 E-value=3.1e+02 Score=26.15 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCceeeeccC-CCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhc
Q psy14115 7 KDRTVRWLDRCLAAHRNPTTQNIFPIVQG-GLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSIN 80 (319)
Q Consensus 7 v~RT~rWl~r~~~~~~~~~~q~lfgiVqG-G~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~ 80 (319)
.+.+++..+..+....... .-..|+-| |..++ .+.+.+.+.+++|..|||.+. ..++|.++++....
T Consensus 182 a~~v~~~Ir~~~~~~~~~~--~~v~IlYGGSV~~~---N~~e~~~~~~idG~LVGgAsl--ka~~f~~ii~~~~~ 249 (251)
T COG0149 182 AEEVHAFIRAVLAELFGAE--EKVRILYGGSVKPG---NAAELAAQPDIDGALVGGASL--KADDFLAILEALAK 249 (251)
T ss_pred HHHHHHHHHHHHHHhcCCC--CCeEEEEeCCcChh---HHHHHhcCCCCCeEEEcceee--cchhHHHHHHHHhh
Confidence 3455566666665432111 22334444 45543 455667788999999999875 56788888876543
No 337
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=26.63 E-value=3.2e+02 Score=27.18 Aligned_cols=77 Identities=12% Similarity=0.040 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEe-cCCCChHHHHHHHHcCCcEeecCC
Q psy14115 36 GLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYV-MGIGFAVDLLICCALGADMFDCVF 114 (319)
Q Consensus 36 G~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l-~Gvg~P~~Il~~V~lGvD~FD~~~ 114 (319)
.+..+...+.++.|.+.|++-.-+|-...++.. ++.+..+.+..+ +++.+ ++-..+.+|-.+++.|+|.+....
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~---~e~i~~i~~~~~--~~~i~~~~r~~~~di~~a~~~g~~~i~i~~ 96 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGFPAVSEDE---KEAIKAIAKLGL--NASILALNRAVKSDIDASIDCGVDAVHIFI 96 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeCCCcChHH---HHHHHHHHhcCC--CeEEEEEcccCHHHHHHHHhCCcCEEEEEE
Confidence 367788899999999999999888755443333 233333333222 24443 566779999999999999876666
Q ss_pred ccc
Q psy14115 115 PTR 117 (319)
Q Consensus 115 Ptr 117 (319)
|+-
T Consensus 97 ~~S 99 (378)
T PRK11858 97 ATS 99 (378)
T ss_pred cCC
Confidence 643
No 338
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=26.62 E-value=2.7e+02 Score=29.66 Aligned_cols=83 Identities=19% Similarity=0.277 Sum_probs=52.5
Q ss_pred CCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCC---CC-----CCCCHHHHHHHHHHhhcCCCCCCCeEe-cC---
Q psy14115 25 TTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGG---LS-----GGEAKEDFWYSVLVSINCLPKDKPRYV-MG--- 92 (319)
Q Consensus 25 ~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgG---l~-----~ge~~~e~~~ii~~~~~~LP~dkPr~l-~G--- 92 (319)
..|+++|. ....+.....++.+.+.++.-+-++| +. .+|++ |+.+..+++.+|.-+...+ -|
T Consensus 15 G~Qs~~~t---r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p---~e~lr~l~~~~~~~~lqml~Rg~n~ 88 (593)
T PRK14040 15 AHQSLFAT---RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDP---WERLRELKKAMPNTPQQMLLRGQNL 88 (593)
T ss_pred cccccccc---ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCH---HHHHHHHHHhCCCCeEEEEecCcce
Confidence 46888865 36777788889999999998887754 11 34555 4444555555664332222 23
Q ss_pred CC---ChHH-----HHHHHHcCCcEeecC
Q psy14115 93 IG---FAVD-----LLICCALGADMFDCV 113 (319)
Q Consensus 93 vg---~P~~-----Il~~V~lGvD~FD~~ 113 (319)
+| +|.+ |-.++..|+|+|-..
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rif 117 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVF 117 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 23 4667 667889999976433
No 339
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=26.61 E-value=5.5e+02 Score=27.18 Aligned_cols=71 Identities=13% Similarity=0.106 Sum_probs=45.7
Q ss_pred HHHHHHHhCCCceEEeCCC--CC------------C----CCHHHHHHHHHHhhcCC-CCCCCeEecC--CCChHHHHHH
Q psy14115 44 DCAHQMVEKDVNGFAVGGL--SG------------G----EAKEDFWYSVLVSINCL-PKDKPRYVMG--IGFAVDLLIC 102 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl--~~------------g----e~~~e~~~ii~~~~~~L-P~dkPr~l~G--vg~P~~Il~~ 102 (319)
..++++.+ +++++.||-- +. + .....+.++++.+.+.- -..+|.-+-| .++|..+...
T Consensus 436 ~~~d~ia~-~vDf~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a~~p~~~~~l 514 (565)
T TIGR01417 436 LIADHLAK-EVDFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMAGDERAIPLL 514 (565)
T ss_pred HhHHHHHh-hCCEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcCCCHHHHHHH
Confidence 34566666 8999998831 11 1 11234455555443322 2468888767 4899999999
Q ss_pred HHcCCcEeecCCc
Q psy14115 103 CALGADMFDCVFP 115 (319)
Q Consensus 103 V~lGvD~FD~~~P 115 (319)
+.+|+|.|-..-+
T Consensus 515 ~~~G~~~lsv~~~ 527 (565)
T TIGR01417 515 LGLGLRELSMSAS 527 (565)
T ss_pred HHCCCCEEEEChH
Confidence 9999999866543
No 340
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=26.26 E-value=1.5e+02 Score=29.50 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=33.5
Q ss_pred HHHHHHHHhCCCceEEe--CCCCC---C--CCH--HHHHHHHHHhhcCCCCCCCeEecCC-CChHHHH
Q psy14115 43 KDCAHQMVEKDVNGFAV--GGLSG---G--EAK--EDFWYSVLVSINCLPKDKPRYVMGI-GFAVDLL 100 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aI--gGl~~---g--e~~--~e~~~ii~~~~~~LP~dkPr~l~Gv-g~P~~Il 100 (319)
.++.+.+.+.+++-+|+ |...+ + +++ .--++.++.+.+.+| +.|.-+.|- |.|.+++
T Consensus 176 eeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~-~vPLVLHGgSG~~~~~~ 242 (347)
T PRK09196 176 EEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP-NTHLVMHGSSSVPQELL 242 (347)
T ss_pred HHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC-CCCEEEeCCCCCCHHHH
Confidence 45556666678887774 33221 1 121 123556777777774 688888876 6765543
No 341
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=26.16 E-value=1.3e+02 Score=30.09 Aligned_cols=47 Identities=19% Similarity=-0.015 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCeEecCCC--ChHHHHHHHHcC-CcEeecC
Q psy14115 66 EAKEDFWYSVLVSINCLPKDKPRYVMGIG--FAVDLLICCALG-ADMFDCV 113 (319)
Q Consensus 66 e~~~e~~~ii~~~~~~LP~dkPr~l~Gvg--~P~~Il~~V~lG-vD~FD~~ 113 (319)
.+.+++.+.|+.+++..+. +|..+-.++ .+.++..+++.| +|.++..
T Consensus 196 ~~~~~l~~~I~~lr~~~~~-~pV~vK~~~~~~~~~~a~~~~~~g~D~I~Vs 245 (392)
T cd02808 196 YSIEDLAQLIEDLREATGG-KPIGVKLVAGHGEGDIAAGVAAAGADFITID 245 (392)
T ss_pred CCHHHHHHHHHHHHHhCCC-ceEEEEECCCCCHHHHHHHHHHcCCCEEEEe
Confidence 3456788899999998875 888875443 799999999877 9987644
No 342
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=26.07 E-value=1.6e+02 Score=25.77 Aligned_cols=63 Identities=17% Similarity=0.052 Sum_probs=39.4
Q ss_pred HHHHHhCCCceEEeCCCCCCCCHH----HHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEe
Q psy14115 46 AHQMVEKDVNGFAVGGLSGGEAKE----DFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMF 110 (319)
Q Consensus 46 ~~~l~~~~~~G~aIgGl~~ge~~~----e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~F 110 (319)
+++..+.+++...+|=+-.-.++. .=++.+.......+ .|.|.+|==+|.++..+.+.|+|.+
T Consensus 108 ~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~--~pv~AlGGI~~~~i~~l~~~Ga~gv 174 (180)
T PF02581_consen 108 AREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASP--IPVYALGGITPENIPELREAGADGV 174 (180)
T ss_dssp HHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTS--SCEEEESS--TTTHHHHHHTT-SEE
T ss_pred HHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCC--CCEEEEcCCCHHHHHHHHHcCCCEE
Confidence 444556788888888663222221 12444555555555 8999997558999999999999976
No 343
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=25.55 E-value=3.7e+02 Score=26.98 Aligned_cols=64 Identities=17% Similarity=0.082 Sum_probs=45.1
Q ss_pred HHHHHHHHHhCCCceEEeCCC-------CCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEee
Q psy14115 42 RKDCAHQMVEKDVNGFAVGGL-------SGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFD 111 (319)
Q Consensus 42 R~~s~~~l~~~~~~G~aIgGl-------~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD 111 (319)
-.+.++.+.+.+++-++|-|- +..-++.++.+++.. + +.|...=++.++.+...+.+.|+|.+.
T Consensus 144 ~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~----~--~IPVI~G~V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 144 AREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE----L--DVPVIAGGVNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH----C--CCCEEEeCCCCHHHHHHHHHcCCCEEE
Confidence 345667777889999998753 122245555555543 2 367765468999999999999999987
No 344
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=25.55 E-value=3.7e+02 Score=25.02 Aligned_cols=75 Identities=20% Similarity=0.093 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhCCCceEEeCCCCCCC------CH---HHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCc
Q psy14115 38 DEALRKDCAHQMVEKDVNGFAVGGLSGGE------AK---EDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGAD 108 (319)
Q Consensus 38 ~~dlR~~s~~~l~~~~~~G~aIgGl~~ge------~~---~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD 108 (319)
+.+.-.+-++++.+.|.+-.-||+-+... .. +.+..+|+.+.+.. +.| ...-.-.|.-+-.|++.|+|
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~--~~p-iSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 22 SLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP--DVP-ISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC--CCe-EEEeCCcHHHHHHHHHhCCC
Confidence 45555666788888999999999876421 12 33555666655433 344 45566889999999999999
Q ss_pred EeecCCc
Q psy14115 109 MFDCVFP 115 (319)
Q Consensus 109 ~FD~~~P 115 (319)
++=++..
T Consensus 99 iINdis~ 105 (258)
T cd00423 99 IINDVSG 105 (258)
T ss_pred EEEeCCC
Confidence 9866644
No 345
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=25.52 E-value=86 Score=28.48 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=28.6
Q ss_pred CCCeEecCCCChHHHHHHHHcCCcEeecCCc
Q psy14115 85 DKPRYVMGIGFAVDLLICCALGADMFDCVFP 115 (319)
Q Consensus 85 dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~P 115 (319)
..+.++..+..|.++..++.+|||.+-+.+|
T Consensus 204 gl~v~~wTvn~~~~~~~l~~~gvdgiiTD~P 234 (234)
T cd08570 204 GKKVFVWTVNTEEDMRYAIRLGVDGVITDDP 234 (234)
T ss_pred CCEEEEEecCCHHHHHHHHHCCCCEEEeCCC
Confidence 5778888999999999999999999999887
No 346
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=25.51 E-value=3.7e+02 Score=28.13 Aligned_cols=66 Identities=21% Similarity=0.306 Sum_probs=42.7
Q ss_pred HHhCCCceEEeCCCCCC--CCHHHH-----------H-HHHHHhh-cCCCCCCCeEec--CCCChHHHHHHHHcCCcEee
Q psy14115 49 MVEKDVNGFAVGGLSGG--EAKEDF-----------W-YSVLVSI-NCLPKDKPRYVM--GIGFAVDLLICCALGADMFD 111 (319)
Q Consensus 49 l~~~~~~G~aIgGl~~g--e~~~e~-----------~-~ii~~~~-~~LP~dkPr~l~--Gvg~P~~Il~~V~lGvD~FD 111 (319)
.++.+.|...|.|..+| -++..+ . ++-+... ..| .++++... |+-++.||+.+++||.|.|-
T Consensus 323 vakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~gl-Rd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~ 401 (485)
T COG0069 323 VAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGL-RDKVKLIADGGLRTGADVAKAAALGADAVG 401 (485)
T ss_pred hhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCC-cceeEEEecCCccCHHHHHHHHHhCcchhh
Confidence 55678899999988654 333322 1 1222222 223 47877764 46799999999999999886
Q ss_pred cCCc
Q psy14115 112 CVFP 115 (319)
Q Consensus 112 ~~~P 115 (319)
..-.
T Consensus 402 ~gTa 405 (485)
T COG0069 402 FGTA 405 (485)
T ss_pred hchH
Confidence 5433
No 347
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=25.40 E-value=95 Score=29.09 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhCCCCCCChhHhhhhhhcccccccCccccccccchhh-hhcccceeeehhhHHHhhc
Q psy14115 188 MREIRESIKEQRFPQYVKQYMKDAYPDENYPRWTIDALRAVNIELTESEPCRSGLRRSLK-CLQISTYLVRSETACAVGY 266 (319)
Q Consensus 188 ~~~iR~aI~~g~f~~~v~~f~~~~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~n~~~~l~~ 266 (319)
+.++++...++.+.+|.+..++.....+-.|+-+.++++..-++ |-++-+++.+. -..=++-+|||+|+
T Consensus 30 ~~~l~~~~~~~~wt~~m~~vl~~L~~~gvt~~~I~~~l~~ip~~-----pgm~~~l~~l~~~~~~~~~~IiSDaN----- 99 (234)
T PF06888_consen 30 PEELRESYPKGGWTEYMDRVLQLLHEQGVTPEDIRDALRSIPID-----PGMKELLRFLAKNQRGFDLIIISDAN----- 99 (234)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCC-----ccHHHHHHHHHhcCCCceEEEEeCCc-----
Confidence 55777777777788888888877654433466677777544332 33455555541 12347788999888
Q ss_pred CccHHHHHHhCCcc
Q psy14115 267 VIGVDVLKKAGGLH 280 (319)
Q Consensus 267 ~~g~~~~~~~gglh 280 (319)
....+.+=+.-||.
T Consensus 100 s~fI~~iL~~~gl~ 113 (234)
T PF06888_consen 100 SFFIETILEHHGLR 113 (234)
T ss_pred HhHHHHHHHhCCCc
Confidence 33444444445554
No 348
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=25.32 E-value=1.4e+02 Score=29.17 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=13.8
Q ss_pred eeeeccCCCCHHHHHHHHHHHHhCCCceEEeCC
Q psy14115 29 IFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGG 61 (319)
Q Consensus 29 lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgG 61 (319)
.-.+++||.+.+-+.+.+++..+...+.|.||+
T Consensus 295 ~~ii~sg~l~~~~~i~~~~~~~~~~~~~fGvGt 327 (343)
T cd01567 295 KKIIISGDLDTEEAIELLLEQGASPNDAFGVGT 327 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHcCCCcCcEEeeCc
Confidence 334555555533333333332222344444444
No 349
>PLN02429 triosephosphate isomerase
Probab=25.19 E-value=2.2e+02 Score=28.05 Aligned_cols=43 Identities=33% Similarity=0.479 Sum_probs=30.2
Q ss_pred eeccCC-CCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHh
Q psy14115 31 PIVQGG-LDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVS 78 (319)
Q Consensus 31 giVqGG-~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~ 78 (319)
-|+.|| ..++ .+.+.+.+.++||+.|||.+. +.++|.++++..
T Consensus 265 rILYGGSV~~~---N~~el~~~~diDG~LVGgASL--~~~~F~~Ii~~~ 308 (315)
T PLN02429 265 RIIYGGSVNGG---NSAELAKEEDIDGFLVGGASL--KGPEFATIVNSV 308 (315)
T ss_pred eEEEcCccCHH---HHHHHhcCCCCCEEEeeccee--cHHHHHHHHHHH
Confidence 345554 5543 334445567899999999876 678899998864
No 350
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=25.12 E-value=2.7e+02 Score=26.89 Aligned_cols=73 Identities=11% Similarity=0.008 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHhCCCc---eEEeCCCCCCCCHHHHHHHHHHhhcC----------C-----CCCCCeEecCCCChHH
Q psy14115 37 LDEALRKDCAHQMVEKDVN---GFAVGGLSGGEAKEDFWYSVLVSINC----------L-----PKDKPRYVMGIGFAVD 98 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~---G~aIgGl~~ge~~~e~~~ii~~~~~~----------L-----P~dkPr~l~Gvg~P~~ 98 (319)
...+.+.++++.+.+.++. |+.+| + ||+.+++.+.+..+.+. + |++.|..-....+|.+
T Consensus 178 ~s~~~~l~~i~~a~~~Gi~v~~~~iiG-l--gEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e 254 (340)
T TIGR03699 178 ISSEEWLEVMETAHKLGLPTTATMMFG-H--VETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTE 254 (340)
T ss_pred CCHHHHHHHHHHHHHcCCCccceeEee-C--CCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHH
Confidence 3556677888888887643 45444 3 88888887766654432 2 4556644333467888
Q ss_pred HHHHHHcCCcEeec
Q psy14115 99 LLICCALGADMFDC 112 (319)
Q Consensus 99 Il~~V~lGvD~FD~ 112 (319)
.+..+++-==+++-
T Consensus 255 ~l~~iA~~Rl~lp~ 268 (340)
T TIGR03699 255 YLKVLAISRIFLDN 268 (340)
T ss_pred HHHHHHHHHHcCCC
Confidence 88887765555553
No 351
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=25.01 E-value=1.8e+02 Score=27.56 Aligned_cols=62 Identities=21% Similarity=0.208 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcE
Q psy14115 40 ALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADM 109 (319)
Q Consensus 40 dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~ 109 (319)
++-.+.++.+.+.+.+++.||| |.|-+.+.+.++++.+.+. .+.|.+++ .|+|..|. -++|-
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGG-S~gvt~~~~~~~v~~ik~~--~~lPvilf-P~~~~~is----~~aDa 89 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGG-SDGVTEENVDNVVEAIKER--TDLPVILF-PGSPSGIS----PYADA 89 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECC-cccccHHHHHHHHHHHHhh--cCCCEEEe-cCChhccC----ccCCe
Confidence 3445667788888999999999 5666777788888888763 35778774 45665443 36663
No 352
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=25.00 E-value=2.7e+02 Score=26.59 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHhCCC---ceEEeCCCCCCCCHHHHHHHHHHhhc---------------CCCCCCCeEec----CCC
Q psy14115 37 LDEALRKDCAHQMVEKDV---NGFAVGGLSGGEAKEDFWYSVLVSIN---------------CLPKDKPRYVM----GIG 94 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~---~G~aIgGl~~ge~~~e~~~ii~~~~~---------------~LP~dkPr~l~----Gvg 94 (319)
...+.+.+.++.+.+.++ .|+.+| + +|+.+++.+.+..+.+ .+|++.| ++- ...
T Consensus 142 ~t~~~~l~~i~~a~~~Gi~~~s~~iiG-~--~Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~-~l~~~~~~~~ 217 (309)
T TIGR00423 142 LSSDEWLEVIKTAHRLGIPTTATMMFG-H--VENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNP-YLEGEVRKGA 217 (309)
T ss_pred CCHHHHHHHHHHHHHcCCCceeeEEec-C--CCCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCCh-hhccCCCCCC
Confidence 455566778888877764 344444 3 4888888887776553 2345666 332 236
Q ss_pred ChHHHHHHHHcCCcEeecCCccccC
Q psy14115 95 FAVDLLICCALGADMFDCVFPTRTA 119 (319)
Q Consensus 95 ~P~~Il~~V~lGvD~FD~~~Ptr~A 119 (319)
+|.+.+..+++-==++| ..|...|
T Consensus 218 ~~~e~lr~iA~~Rl~lp-~~~~i~a 241 (309)
T TIGR00423 218 SGIDDLKVIAISRILLN-NIRNIQA 241 (309)
T ss_pred CHHHHHHHHHHHHHhcC-CCcccee
Confidence 78888877776544455 4554444
No 353
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=24.95 E-value=1.2e+02 Score=28.89 Aligned_cols=36 Identities=28% Similarity=0.237 Sum_probs=30.2
Q ss_pred HHHhhcCCCCCCCeEe-cCCCChHHHHHHHHcCCcEe
Q psy14115 75 VLVSINCLPKDKPRYV-MGIGFAVDLLICCALGADMF 110 (319)
Q Consensus 75 i~~~~~~LP~dkPr~l-~Gvg~P~~Il~~V~lGvD~F 110 (319)
.....+.+|.+..+.. .|+.+|.|+...-..|+|-|
T Consensus 197 t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~ 233 (254)
T COG0134 197 TEKLAPLIPKDVILISESGISTPEDVRRLAKAGADAF 233 (254)
T ss_pred HHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEE
Confidence 4456778898876665 69999999999999999976
No 354
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=24.91 E-value=4.3e+02 Score=25.22 Aligned_cols=75 Identities=7% Similarity=-0.173 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHhCC-----CceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEee
Q psy14115 37 LDEALRKDCAHQMVEKD-----VNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFD 111 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~-----~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD 111 (319)
...+.+.+-++.|.+.| ++-.-++.++ ..++..+...+...++..+..+ .......+|-.+++.|+|.+.
T Consensus 18 ~~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~~----~~d~~~v~~~~~~~~~~~~v~~-~~r~~~~die~A~~~g~~~v~ 92 (279)
T cd07947 18 YTVEQIVKIYDYLHELGGGSGVIRQTEFFLYT----EKDREAVEACLDRGYKFPEVTG-WIRANKEDLKLVKEMGLKETG 92 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccceEEecCcC----hHHHHHHHHHHHcCCCCCEEEE-EecCCHHHHHHHHHcCcCEEE
Confidence 36788899999999999 8877775442 2444444443332331122333 377899999999999999866
Q ss_pred cCCcc
Q psy14115 112 CVFPT 116 (319)
Q Consensus 112 ~~~Pt 116 (319)
-+.|+
T Consensus 93 i~~s~ 97 (279)
T cd07947 93 ILMSV 97 (279)
T ss_pred EEEcC
Confidence 65554
No 355
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=24.82 E-value=1.6e+02 Score=28.41 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCceeeeccCCCCH-------H---HHHHHHHHHHhCCCceEEe--CCCC---CCCC
Q psy14115 3 VAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDE-------A---LRKDCAHQMVEKDVNGFAV--GGLS---GGEA 67 (319)
Q Consensus 3 ~~~av~RT~rWl~r~~~~~~~~~~q~lfgiVqGG~~~-------d---lR~~s~~~l~~~~~~G~aI--gGl~---~ge~ 67 (319)
.++-++.|.+..+.+-..--.. ..-.|.|-|.-+. . --.++.+.+.+.+++-+|+ |... .++
T Consensus 110 ~eeNi~~T~~vv~~Ah~~gvsV--EaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~- 186 (284)
T PRK12737 110 FEENIAIVKEVVEFCHRYDASV--EAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGE- 186 (284)
T ss_pred HHHHHHHHHHHHHHHHHcCCEE--EEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccCCC-
Confidence 3566777887777664321100 1122333222111 0 1134455555678887774 4332 222
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEecCC-CChHH-HHHHHHcCCc
Q psy14115 68 KEDFWYSVLVSINCLPKDKPRYVMGI-GFAVD-LLICCALGAD 108 (319)
Q Consensus 68 ~~e~~~ii~~~~~~LP~dkPr~l~Gv-g~P~~-Il~~V~lGvD 108 (319)
+.--++.++.+.+.+ +.|.-+.|- |.|.+ +..++.+||-
T Consensus 187 p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~~Gi~ 227 (284)
T PRK12737 187 PKLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAISLGIC 227 (284)
T ss_pred CcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHCCCe
Confidence 233345566666555 478888875 88777 6679999984
No 356
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=24.64 E-value=4.4e+02 Score=24.35 Aligned_cols=73 Identities=18% Similarity=0.025 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhCCCceEEeCCCC-------------------CCCCHHHHHHHHHHhhcCCCCCCCeEecCCCCh--
Q psy14115 38 DEALRKDCAHQMVEKDVNGFAVGGLS-------------------GGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFA-- 96 (319)
Q Consensus 38 ~~dlR~~s~~~l~~~~~~G~aIgGl~-------------------~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P-- 96 (319)
+.+.-.+.++.+.+.+++.+=+|=.. .|-+.+...++++.+++.. +.|.++|+--+|
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~--~~pv~lm~y~n~~~ 89 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN--TIPIVLMGYYNPIL 89 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC--CCCEEEEEecCHHH
Confidence 44555677888888888888888110 1222335677777777654 578899887665
Q ss_pred ----HH-HHHHHHcCCcEeec
Q psy14115 97 ----VD-LLICCALGADMFDC 112 (319)
Q Consensus 97 ----~~-Il~~V~lGvD~FD~ 112 (319)
.. +-.+...|+|.+-.
T Consensus 90 ~~G~~~fi~~~~~aG~~giii 110 (242)
T cd04724 90 QYGLERFLRDAKEAGVDGLII 110 (242)
T ss_pred HhCHHHHHHHHHHCCCcEEEE
Confidence 44 55688999996544
No 357
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=24.58 E-value=2.6e+02 Score=26.51 Aligned_cols=78 Identities=10% Similarity=0.006 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHhCCCceEEeCCCCCCC--C-HHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecC
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFAVGGLSGGE--A-KEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge--~-~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
+..+.+.+.++.|.+.+++-.-+|.++... + -.+..+++..+.. .+ ..++..=+....++-.+++.|+|.+...
T Consensus 17 ~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~-~~--~~~~~~~~~~~~dv~~A~~~g~~~i~i~ 93 (274)
T cd07938 17 IPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR-RP--GVRYSALVPNLRGAERALAAGVDEVAVF 93 (274)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc-CC--CCEEEEECCCHHHHHHHHHcCcCEEEEE
Confidence 677899999999999999999999542211 0 0111133333322 22 3454322478999999999999977666
Q ss_pred Cccc
Q psy14115 114 FPTR 117 (319)
Q Consensus 114 ~Ptr 117 (319)
.|+-
T Consensus 94 ~~~S 97 (274)
T cd07938 94 VSAS 97 (274)
T ss_pred EecC
Confidence 6554
No 358
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=24.48 E-value=1.6e+02 Score=28.44 Aligned_cols=63 Identities=14% Similarity=0.127 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCceEEe--CCCC---CCCCHHHHHHHHHHhhcCCCCCCCeEecCC-CChHH-HHHHHHcCCc
Q psy14115 43 KDCAHQMVEKDVNGFAV--GGLS---GGEAKEDFWYSVLVSINCLPKDKPRYVMGI-GFAVD-LLICCALGAD 108 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aI--gGl~---~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gv-g~P~~-Il~~V~lGvD 108 (319)
.++.+.+.+.+++-+|+ |... .++ +.--++.++.+.+.+ +.|.-+.|- |.|.+ +..++.+||-
T Consensus 156 eea~~Fv~~TgvD~LAvaiGt~HG~yk~~-p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~ 225 (282)
T TIGR01858 156 QEAKEFVEATGVDSLAVAIGTAHGLYKKT-PKLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIELGIC 225 (282)
T ss_pred HHHHHHHHHHCcCEEecccCccccCcCCC-CccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCe
Confidence 44555555678887774 4332 222 233355666666655 478888875 77766 7789999883
No 359
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=24.34 E-value=2.5e+02 Score=25.41 Aligned_cols=67 Identities=16% Similarity=0.068 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCCceEEeCCCCC-CCCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEee
Q psy14115 43 KDCAHQMVEKDVNGFAVGGLSG-GEAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFD 111 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgGl~~-ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD 111 (319)
.+-++.+.+.+++.+.+-+... |.....-++.+..+++.+ +.|.+.- |+.+|.++..+.+.|+|-+-
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~~Ga~gv~ 220 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKEAGAAGVV 220 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 3445555677888887755421 111111234455555554 3788876 58999999999999999753
No 360
>PRK05927 hypothetical protein; Provisional
Probab=24.30 E-value=6.3e+02 Score=24.93 Aligned_cols=101 Identities=16% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhc---CCCCCceeeeccCCCCHHHHHHHHHHHHhCC--CceEE--eC------CCCC------CCCHHH
Q psy14115 10 TVRWLDRCLAAHR---NPTTQNIFPIVQGGLDEALRKDCAHQMVEKD--VNGFA--VG------GLSG------GEAKED 70 (319)
Q Consensus 10 T~rWl~r~~~~~~---~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~--~~G~a--Ig------Gl~~------ge~~~e 70 (319)
+..|++-...+|+ +.....+||+ |-..+-|.+.+..|.+.+ +.||. |- |... ..+.++
T Consensus 184 ~~~rl~~i~~A~~lGi~~~sg~l~G~---gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e 260 (350)
T PRK05927 184 PDGWIQFHKLAHRLGFRSTATMMFGH---VESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPEL 260 (350)
T ss_pred HHHHHHHHHHHHHcCCCcCceeEEee---CCCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHH
Q ss_pred HHHHHHHhhcCCCCCCCeE-ecCCCChHHH-HHHHHcCCcEeecCC
Q psy14115 71 FWYSVLVSINCLPKDKPRY-VMGIGFAVDL-LICCALGADMFDCVF 114 (319)
Q Consensus 71 ~~~ii~~~~~~LP~dkPr~-l~Gvg~P~~I-l~~V~lGvD~FD~~~ 114 (319)
..+++..++-.|| +.+.. ..-+....++ ..++..|+|-++.+.
T Consensus 261 ~Lr~iAv~Rl~lp-~~~~i~~~w~~~G~~~~q~~L~~GanDlggt~ 305 (350)
T PRK05927 261 YYRILAVARIFLD-NFDHIAASWFGEGKEEGAKGLHYGADDFGGTI 305 (350)
T ss_pred HHHHHHHHHHhCC-CCCcccCCccccCHHHHHHHHhCCCccccCCC
No 361
>KOG3120|consensus
Probab=24.27 E-value=94 Score=29.48 Aligned_cols=99 Identities=13% Similarity=0.228 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhCCCCCCChhHhhhhhhcccccccCccccccccchhhhhccc-ceeeehhhHHH
Q psy14115 185 MRLMREIRESIKEQRFPQYVKQYMKDAYPDENYPRWTIDALRAVNIELTESEPCRSGLRRSLKCLQIS-TYLVRSETACA 263 (319)
Q Consensus 185 ~~l~~~iR~aI~~g~f~~~v~~f~~~~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~n~~~~ 263 (319)
.+++.++|..+.+|-+.+|..+.++..-..+..+.-+.+.+|+- .+. |=+.-++.++. +.-| .-||||-|=
T Consensus 40 ~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~i--P~~---Pgmv~lik~~a-k~g~~eliIVSDaN-- 111 (256)
T KOG3120|consen 40 TDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRSI--PIV---PGMVRLIKSAA-KLGCFELIIVSDAN-- 111 (256)
T ss_pred chhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcC--CCC---ccHHHHHHHHH-hCCCceEEEEecCc--
Confidence 35678999999999999999988887554444566677776653 332 22222233311 1223 567776443
Q ss_pred hhcCccHHHHHHhCCcccccCCCCccccCCCCce
Q psy14115 264 VGYVIGVDVLKKAGGLHKFMGWKRALLTDSGGFQ 297 (319)
Q Consensus 264 l~~~~g~~~~~~~gglh~f~~w~~~ilTDSGgfQ 297 (319)
..+.|.+=++-|+|.+.. -|.|--++|+
T Consensus 112 ---sfFIe~~Lea~~~~d~F~---~IfTNPa~~d 139 (256)
T KOG3120|consen 112 ---SFFIEEILEAAGIHDLFS---EIFTNPACVD 139 (256)
T ss_pred ---hhHHHHHHHHccHHHHHH---HHhcCCcccC
Confidence 234555667778888764 5666666554
No 362
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=24.21 E-value=1.1e+02 Score=29.06 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=36.8
Q ss_pred HHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcE--eecCCccccC
Q psy14115 73 YSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADM--FDCVFPTRTA 119 (319)
Q Consensus 73 ~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~--FD~~~Ptr~A 119 (319)
..+..+++.+|++++ ....+.++++...++..|+|+ +|..+|....
T Consensus 169 ~~v~~~r~~~~~~~~-I~vev~t~eea~~A~~~gaD~I~ld~~~~e~l~ 216 (269)
T cd01568 169 EAVKRARAAAPFEKK-IEVEVETLEEAEEALEAGADIIMLDNMSPEELK 216 (269)
T ss_pred HHHHHHHHhCCCCCe-EEEecCCHHHHHHHHHcCCCEEEECCCCHHHHH
Confidence 457778888887664 556889999999999999995 7888886654
No 363
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=24.20 E-value=1e+02 Score=29.71 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=38.6
Q ss_pred HHHHHHHhCCCceEEe--CCCC---CC-CCHHHHHHHHHHhhcCCCCCCCeEecCC-CChH-HHHHHHHcCC
Q psy14115 44 DCAHQMVEKDVNGFAV--GGLS---GG-EAKEDFWYSVLVSINCLPKDKPRYVMGI-GFAV-DLLICCALGA 107 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aI--gGl~---~g-e~~~e~~~ii~~~~~~LP~dkPr~l~Gv-g~P~-~Il~~V~lGv 107 (319)
++.+.+.+.+++-+|+ |... .+ ..+.--.+.++.+.+.+| +.|.-+.|- |.|. ++-.++.+||
T Consensus 159 ~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi 229 (287)
T PF01116_consen 159 EAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVP-DIPLVLHGGSGLPDEQIRKAIKNGI 229 (287)
T ss_dssp HHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHH-TSEEEESSCTTS-HHHHHHHHHTTE
T ss_pred HHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcC-CCCEEEECCCCCCHHHHHHHHHcCc
Confidence 4445555678888874 4322 22 233444566666666664 688888875 8777 5789999987
No 364
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=23.92 E-value=1.7e+02 Score=28.17 Aligned_cols=102 Identities=15% Similarity=0.135 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCceeeeccCCCCH-------H---HHHHHHHHHHhCCCceEEe--CCCCCCC--CH
Q psy14115 3 VAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDE-------A---LRKDCAHQMVEKDVNGFAV--GGLSGGE--AK 68 (319)
Q Consensus 3 ~~~av~RT~rWl~r~~~~~~~~~~q~lfgiVqGG~~~-------d---lR~~s~~~l~~~~~~G~aI--gGl~~ge--~~ 68 (319)
.++-+++|.+..+.+-...-.. ..-.|.|-|.-+. . --.++.+.+.+.+++-+|+ |...+.- .+
T Consensus 110 ~eeNi~~T~~vv~~Ah~~gvsV--EaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p 187 (284)
T PRK12857 110 LEENIALTKKVVEIAHAVGVSV--EAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEP 187 (284)
T ss_pred HHHHHHHHHHHHHHHHHcCCEE--EEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCC
Confidence 3567888888888774321100 1122333321110 0 1134445555668887774 4332211 22
Q ss_pred HHHHHHHHHhhcCCCCCCCeEecCC-CChHH-HHHHHHcCCc
Q psy14115 69 EDFWYSVLVSINCLPKDKPRYVMGI-GFAVD-LLICCALGAD 108 (319)
Q Consensus 69 ~e~~~ii~~~~~~LP~dkPr~l~Gv-g~P~~-Il~~V~lGvD 108 (319)
.--++.++.+.+.+ +.|.-+.|- |.|.+ +..++++||-
T Consensus 188 ~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~ 227 (284)
T PRK12857 188 KLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAISLGVR 227 (284)
T ss_pred cCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCe
Confidence 33355566666555 478888876 77766 7789999883
No 365
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=23.80 E-value=3.2e+02 Score=20.52 Aligned_cols=64 Identities=8% Similarity=-0.025 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecC-CCChHHHHHHHHcCCcEe
Q psy14115 43 KDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMG-IGFAVDLLICCALGADMF 110 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~G-vg~P~~Il~~V~lGvD~F 110 (319)
.++.+.+.+..++-+.++.-..+.+..++.+.+.... ++.|..+++ -.++..+..+...|+|-|
T Consensus 33 ~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~----~~~~ii~~t~~~~~~~~~~~~~~g~~~~ 97 (112)
T PF00072_consen 33 EEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQIN----PSIPIIVVTDEDDSDEVQEALRAGADDY 97 (112)
T ss_dssp HHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHT----TTSEEEEEESSTSHHHHHHHHHTTESEE
T ss_pred HHHHHHhcccCceEEEEEeeecccccccccccccccc----ccccEEEecCCCCHHHHHHHHHCCCCEE
Confidence 3455666667788887776555556666666665433 455666554 578889999999999854
No 366
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=23.77 E-value=2e+02 Score=27.75 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCceeeeccCCCCH-------HH---HHHHHHHHHhCCCceEEeC--CCC---CCCC
Q psy14115 3 VAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDE-------AL---RKDCAHQMVEKDVNGFAVG--GLS---GGEA 67 (319)
Q Consensus 3 ~~~av~RT~rWl~r~~~~~~~~~~q~lfgiVqGG~~~-------dl---R~~s~~~l~~~~~~G~aIg--Gl~---~ge~ 67 (319)
.++-+++|.+..+.+-..--.. ..-.|.|.|+-+. ++ -.++.+.+.+.+++-+|+. ... .+++
T Consensus 113 ~eeNi~~T~~vv~~Ah~~gv~V--EaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p 190 (288)
T TIGR00167 113 FEENIELTKKVVERAHKMGVSV--EAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEP 190 (288)
T ss_pred HHHHHHHHHHHHHHHHHcCCEE--EEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCC
Confidence 3567788888888764321100 1122333222111 00 1345555556788887744 322 2222
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEecCC-CChH-HHHHHHHcCCc
Q psy14115 68 KEDFWYSVLVSINCLPKDKPRYVMGI-GFAV-DLLICCALGAD 108 (319)
Q Consensus 68 ~~e~~~ii~~~~~~LP~dkPr~l~Gv-g~P~-~Il~~V~lGvD 108 (319)
+.--++.++.+.+.+ +.|.-+.|- |.|. ++..+|..||-
T Consensus 191 ~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~~Gi~ 231 (288)
T TIGR00167 191 KGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAISLGVV 231 (288)
T ss_pred CccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCe
Confidence 213455666666666 478888875 8885 58889999983
No 367
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=23.64 E-value=3e+02 Score=28.86 Aligned_cols=82 Identities=11% Similarity=0.146 Sum_probs=51.5
Q ss_pred CCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCC--------CCCCHHHHHHHHHHhhcCCCCCCCeEec-----
Q psy14115 25 TTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLS--------GGEAKEDFWYSVLVSINCLPKDKPRYVM----- 91 (319)
Q Consensus 25 ~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~--------~ge~~~e~~~ii~~~~~~LP~dkPr~l~----- 91 (319)
..|+++|. ....+--...++.+.+.++.-+-++|=. .+|++ |+.+..+++.+|.-+-..+.
T Consensus 15 G~QSl~at---r~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edp---werlr~lr~~~~nt~lqmL~Rg~N~ 88 (499)
T PRK12330 15 AHQSLMAT---RMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDP---WERLRTFRKLMPNSRLQMLLRGQNL 88 (499)
T ss_pred hhhcccCc---cCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCH---HHHHHHHHHhCCCCeEEEEEccccc
Confidence 35777766 3566777778889999898888777532 23444 55555566666644333332
Q ss_pred -CCC-ChH-----HHHHHHHcCCcEeec
Q psy14115 92 -GIG-FAV-----DLLICCALGADMFDC 112 (319)
Q Consensus 92 -Gvg-~P~-----~Il~~V~lGvD~FD~ 112 (319)
|.. +|. +|-.+++.|+|+|-.
T Consensus 89 vGy~~y~ddvv~~fv~~a~~~Gidi~RI 116 (499)
T PRK12330 89 LGYRHYEDEVVDRFVEKSAENGMDVFRV 116 (499)
T ss_pred CCccCcchhHHHHHHHHHHHcCCCEEEE
Confidence 333 343 466788999997543
No 368
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=23.11 E-value=5.3e+02 Score=24.96 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=48.6
Q ss_pred cCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCH-------------HHHHHHHHHhhcCCCCCCCeEec-CCCChHHH
Q psy14115 34 QGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAK-------------EDFWYSVLVSINCLPKDKPRYVM-GIGFAVDL 99 (319)
Q Consensus 34 qGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~-------------~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~I 99 (319)
.||.+.+.=.+-++.|.+.+++-+-+.+-...... --+++....+.+.+ +.|...- ++.+|.+.
T Consensus 230 ~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G~i~t~~~a 307 (338)
T cd04733 230 RGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT--KTPLMVTGGFRTRAAM 307 (338)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc--CCCEEEeCCCCCHHHH
Confidence 46788776667788888888877776542111110 01234444444444 4677765 46789999
Q ss_pred HHHHHcC-CcEeec
Q psy14115 100 LICCALG-ADMFDC 112 (319)
Q Consensus 100 l~~V~lG-vD~FD~ 112 (319)
..+++.| +|++=.
T Consensus 308 ~~~l~~g~aD~V~l 321 (338)
T cd04733 308 EQALASGAVDGIGL 321 (338)
T ss_pred HHHHHcCCCCeeee
Confidence 9999987 787643
No 369
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=23.06 E-value=5.7e+02 Score=24.11 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhCCCceEEeCCCCCC-CCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHc--CCcEeecCCc
Q psy14115 39 EALRKDCAHQMVEKDVNGFAVGGLSGG-EAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCAL--GADMFDCVFP 115 (319)
Q Consensus 39 ~dlR~~s~~~l~~~~~~G~aIgGl~~g-e~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~l--GvD~FD~~~P 115 (319)
.+--.+-++++.+.|.+-.-||+-+.. ++.+.+..+|+.+.+.. +.|. ..-.-.|.-+-.+++. |.|++-++..
T Consensus 24 ~~~i~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~--~~pl-sIDT~~~~v~eaaL~~~~G~~iINsIs~ 100 (261)
T PRK07535 24 AAFIQKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVV--DVPL-CIDSPNPAAIEAGLKVAKGPPLINSVSA 100 (261)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhC--CCCE-EEeCCCHHHHHHHHHhCCCCCEEEeCCC
Confidence 334445567777889999999985443 33566777888776544 4553 4466788888888888 9999877765
No 370
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=22.98 E-value=3.4e+02 Score=25.02 Aligned_cols=66 Identities=15% Similarity=-0.021 Sum_probs=44.2
Q ss_pred HHHHHhCCCceEEeCCCCCCCCHH----HHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEeecC
Q psy14115 46 AHQMVEKDVNGFAVGGLSGGEAKE----DFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 46 ~~~l~~~~~~G~aIgGl~~ge~~~----e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
+++..+.+.+.+++|-+-.-.+|+ .-++.+..+.+..+ .|.+.+|==+|+++....+.|+|-+=.+
T Consensus 117 a~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~--iP~vAIGGi~~~nv~~v~~~Ga~gVAvv 186 (211)
T COG0352 117 ALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVN--IPVVAIGGINLENVPEVLEAGADGVAVV 186 (211)
T ss_pred HHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCC--CCEEEEcCCCHHHHHHHHHhCCCeEEeh
Confidence 344445678888888764333322 22445555555554 8899888779999999999999955333
No 371
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=22.96 E-value=6e+02 Score=23.41 Aligned_cols=96 Identities=11% Similarity=0.089 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEe--C-----------CCCCCCCHHHHHHHHH
Q psy14115 10 TVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAV--G-----------GLSGGEAKEDFWYSVL 76 (319)
Q Consensus 10 T~rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aI--g-----------Gl~~ge~~~e~~~ii~ 76 (319)
..+|.++.+...+.. ...+++-..|.+++.-.++++.+.+. .+++-| | |...+.+++.+.++++
T Consensus 57 ~~~~~~~~~~~~~~~--~~p~~vqi~g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~ 133 (233)
T cd02911 57 PLEFIEGEIKALKDS--NVLVGVNVRSSSLEPLLNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIK 133 (233)
T ss_pred hHHHHHHHHHHhhcc--CCeEEEEecCCCHHHHHHHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHH
Confidence 457777766544332 23556666678888777888877653 354443 2 3233467888899999
Q ss_pred HhhcCCCCCCCeEe-cCCC---ChHHHH-HHHHcCCcEee
Q psy14115 77 VSINCLPKDKPRYV-MGIG---FAVDLL-ICCALGADMFD 111 (319)
Q Consensus 77 ~~~~~LP~dkPr~l-~Gvg---~P~~Il-~~V~lGvD~FD 111 (319)
.+.+. +.|..+ +..| ...++. .+...|+|.+.
T Consensus 134 avr~~---~~pVsvKir~g~~~~~~~la~~l~~aG~d~ih 170 (233)
T cd02911 134 ALKET---GVPVSVKIRAGVDVDDEELARLIEKAGADIIH 170 (233)
T ss_pred HHHhc---CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEE
Confidence 88873 677765 4443 344454 35579999874
No 372
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=22.83 E-value=81 Score=28.91 Aligned_cols=35 Identities=14% Similarity=-0.026 Sum_probs=31.8
Q ss_pred CCCeEecCCCChHHHHHHHHcCCcEeecCCccccC
Q psy14115 85 DKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTA 119 (319)
Q Consensus 85 dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~A 119 (319)
.++.++..|-+|.++-.++.+|||.+-+.+|....
T Consensus 212 G~~v~vWTVN~~~~~~~l~~~gVdgIiTD~p~~~~ 246 (249)
T cd08561 212 GLEVHVWTVNDPAEMRRLLDLGVDGIITDRPDLLL 246 (249)
T ss_pred CCEEEEEecCCHHHHHHHHhcCCCEEEcCCHHHHH
Confidence 67888999999999999999999999999998654
No 373
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=22.65 E-value=3.7e+02 Score=21.97 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEec-CC--CChHHHHHH
Q psy14115 42 RKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVM-GI--GFAVDLLIC 102 (319)
Q Consensus 42 R~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gv--g~P~~Il~~ 102 (319)
-..+++.+.-. ...+..=++..+++.+++.+-++...+.++++....++ -+ |+|-++...
T Consensus 16 l~~s~~~i~G~-~~~i~~i~~~~~~~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~a~~ 78 (116)
T TIGR00824 16 LLKSAEMIFGE-QNNVGAVPFVPGENAETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNAAAR 78 (116)
T ss_pred HHHHHHHHcCC-cCCeEEEEcCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHH
Confidence 34455555432 23333334777888888888888888888776666554 34 889887653
No 374
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.51 E-value=4.5e+02 Score=24.25 Aligned_cols=63 Identities=16% Similarity=0.075 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCceEEeCCC-----CCCCCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEee
Q psy14115 43 KDCAHQMVEKDVNGFAVGGL-----SGGEAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFD 111 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgGl-----~~ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD 111 (319)
..-++++.+.++.++.+-.. ..|.+.+-+.++.+ .. +.|...- |+++++++..+.++|+|-+-
T Consensus 151 ~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~----~~--~ipvi~~GGi~s~edi~~l~~~G~~~vi 219 (234)
T PRK13587 151 FSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVK----AT--TIPVIASGGIRHQQDIQRLASLNVHAAI 219 (234)
T ss_pred HHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHH----hC--CCCEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 44566667778888775544 23444443344433 22 3667765 69999999999999999653
No 375
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=22.50 E-value=1.1e+02 Score=28.00 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=29.3
Q ss_pred CCCeEecCCCChHHHHHHHHcCCcEeecCCcc
Q psy14115 85 DKPRYVMGIGFAVDLLICCALGADMFDCVFPT 116 (319)
Q Consensus 85 dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Pt 116 (319)
.++.++.++..|.++-.++.+|||.+-+.+|.
T Consensus 231 G~~v~vwtvn~~~~~~~~~~~Gvdgi~TD~P~ 262 (263)
T cd08567 231 GLKVVPWTVNDPEDMARLIDLGVDGIITDYPD 262 (263)
T ss_pred CCEEEEecCCCHHHHHHHHHcCCCEEEcCCCC
Confidence 57788899999999999999999999999985
No 376
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=22.47 E-value=6.5e+02 Score=23.60 Aligned_cols=76 Identities=13% Similarity=0.023 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHhCCCceEEeCCCCCC-CCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHc--CCcEeecCC
Q psy14115 38 DEALRKDCAHQMVEKDVNGFAVGGLSGG-EAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCAL--GADMFDCVF 114 (319)
Q Consensus 38 ~~dlR~~s~~~l~~~~~~G~aIgGl~~g-e~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~l--GvD~FD~~~ 114 (319)
+.+--.+-++++.+.|.+-.-||+-+.. .+.+++.+++..+.+.. +.| ...-...|.-+-.+++. |+|++-++.
T Consensus 24 ~~d~~~~~A~~~~~~GAdiIDIG~~~~~~~~~ee~~r~v~~i~~~~--~~p-iSIDT~~~~v~e~aL~~~~G~~iINsIs 100 (252)
T cd00740 24 DYDEALDVARQQVEGGAQILDLNVDYGGLDGVSAMKWLLNLLATEP--TVP-LMLDSTNWEVIEAGLKCCQGKCVVNSIN 100 (252)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCc-EEeeCCcHHHHHHHHhhCCCCcEEEeCC
Confidence 3344445566777889999999984332 23567778876665443 455 34466788888889987 999998776
Q ss_pred cc
Q psy14115 115 PT 116 (319)
Q Consensus 115 Pt 116 (319)
..
T Consensus 101 ~~ 102 (252)
T cd00740 101 LE 102 (252)
T ss_pred CC
Confidence 54
No 377
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=22.46 E-value=6.5e+02 Score=23.57 Aligned_cols=98 Identities=13% Similarity=0.052 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCceeeeccCCCCHHHHHHHHHHHHh-CCCceEEeCCCCCCCCHHHHHHHHHHhhc
Q psy14115 2 RVAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVE-KDVNGFAVGGLSGGEAKEDFWYSVLVSIN 80 (319)
Q Consensus 2 r~~~av~RT~rWl~r~~~~~~~~~~q~lfgiVqGG~~~dlR~~s~~~l~~-~~~~G~aIgGl~~ge~~~e~~~ii~~~~~ 80 (319)
|-++|-+....|.|+..=..+ -+..+..+-+.-++-++++.+ .+++|.-|-- ++++++...|..-
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~d~~~l~~~yg~~gv~i~~----~np~~l~~~V~k~-- 80 (216)
T PRK03892 15 RSEEAYELAKEWFDEVVFTKK--------LVLEDSPDFGSLKEELKELKKEYGKVAILLVT----PKPSLIREVKQRF-- 80 (216)
T ss_pred ccHHHHHHHHHHhhheEEEEE--------EeccCCCChhhhHHHHHHHHHhcCcceEEEec----CCHHHHHHHHHhc--
Confidence 446788888899887542111 123333344444455555543 4666665543 5677777777653
Q ss_pred CCCCCCCeEecCCCChHHHHHHHHcCCcEeecCCccc
Q psy14115 81 CLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTR 117 (319)
Q Consensus 81 ~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr 117 (319)
...-.++.| |+..-.-.++..|||+.-.++-.|
T Consensus 81 ---~~~vv~V~G-Gd~~vNR~AvE~~VDVL~~P~~~R 113 (216)
T PRK03892 81 ---LNYLIYVQG-GDLRVNRYAIERGVDAIISPWVGR 113 (216)
T ss_pred ---cceEEEEEC-CcHHHHHHHHhcccceeecccccC
Confidence 122233333 666666677888999986666543
No 378
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=22.32 E-value=3.3e+02 Score=24.43 Aligned_cols=65 Identities=15% Similarity=0.083 Sum_probs=43.0
Q ss_pred HHHHHHHhCCCceEEeCCCCCC-CCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEe
Q psy14115 44 DCAHQMVEKDVNGFAVGGLSGG-EAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMF 110 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl~~g-e~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~F 110 (319)
+-++.+.+.+++.+.+-.+..- +......++++.+.+.. +.|..+- |+.+.+++..+.++|+|.+
T Consensus 34 ~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~v 100 (233)
T PRK00748 34 AQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRV 100 (233)
T ss_pred HHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEE
Confidence 3466667788888887766432 12223344555554443 3677764 6899999999999999964
No 379
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=22.31 E-value=1.9e+02 Score=28.20 Aligned_cols=64 Identities=13% Similarity=0.196 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCceEE--eCCCCC---CCCHHHHHHHHHHhhcCCCCCCCeEecCC-CChHH-HHHHHHcCCc
Q psy14115 43 KDCAHQMVEKDVNGFA--VGGLSG---GEAKEDFWYSVLVSINCLPKDKPRYVMGI-GFAVD-LLICCALGAD 108 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~a--IgGl~~---ge~~~e~~~ii~~~~~~LP~dkPr~l~Gv-g~P~~-Il~~V~lGvD 108 (319)
.++.+...+.+++-+| ||...+ +.++.--.++++.+.+..+ .|.-+.|- |.|.+ |..+|.+||-
T Consensus 159 ~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~--~PlVlHGgSGip~~eI~~aI~~GV~ 229 (286)
T COG0191 159 EEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVS--LPLVLHGGSGIPDEEIREAIKLGVA 229 (286)
T ss_pred HHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHhC--CCEEEeCCCCCCHHHHHHHHHhCce
Confidence 3455555555677666 554322 2222222334444444443 55555654 77765 8899999984
No 380
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=22.26 E-value=5.6e+02 Score=22.82 Aligned_cols=59 Identities=10% Similarity=-0.043 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEee
Q psy14115 42 RKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFD 111 (319)
Q Consensus 42 R~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~FD 111 (319)
-.+.++.+.+.+++++.+++. ++ .++.+.+. . .+. ..+..+.++.++..+.+.|+|.|-
T Consensus 69 ~~~~~~~~~~~g~d~v~l~~~---~~-~~~~~~~~---~---~~i-~~i~~v~~~~~~~~~~~~gad~i~ 127 (236)
T cd04730 69 FEALLEVALEEGVPVVSFSFG---PP-AEVVERLK---A---AGI-KVIPTVTSVEEARKAEAAGADALV 127 (236)
T ss_pred HHHHHHHHHhCCCCEEEEcCC---CC-HHHHHHHH---H---cCC-EEEEeCCCHHHHHHHHHcCCCEEE
Confidence 345566667789999999875 33 33333322 2 123 334566778888888899999864
No 381
>PRK05354 arginine decarboxylase; Provisional
Probab=22.24 E-value=1.3e+02 Score=32.46 Aligned_cols=100 Identities=15% Similarity=0.370 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHhCCCC----CCC-hh-HhhhhhhcccccccCccccccccchhhhh---cccceeee---hhhHHHhhcC
Q psy14115 200 FPQYVKQYMKDAYPDE----NYP-RW-TIDALRAVNIELTESEPCRSGLRRSLKCL---QISTYLVR---SETACAVGYV 267 (319)
Q Consensus 200 f~~~v~~f~~~~~~~~----~~p-~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~n~~~~l~~~ 267 (319)
+++.-+....+|+.+- +.| .| +.|..=.+=++=..+.|+..|.+.-+.|+ +|..||=- .++ |.++
T Consensus 449 ~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pi~rl~e~p~~~~~l~DiTCDSDg~i~~fi~~~~~~~~---l~lh 525 (634)
T PRK05354 449 LDELQERLADKYYVNFSLFQSLPDAWAIDQLFPIMPLHRLDEEPTRRAVLADITCDSDGKIDQFIDGQGIKTT---LPLH 525 (634)
T ss_pred HHHHHHHhhhheEEeeehhccccchhhhCCccceeeccccCCCcceeeEEecccccCCCchhcccCCcCCcCc---eeCC
Confidence 4444444445565432 345 67 55555566666667778888888888876 34344311 111 1111
Q ss_pred ---ccH----------HHHHHhCCcccccCCCC---ccccCCCCceeEecc
Q psy14115 268 ---IGV----------DVLKKAGGLHKFMGWKR---ALLTDSGGFQMVSLL 302 (319)
Q Consensus 268 ---~g~----------~~~~~~gglh~f~~w~~---~ilTDSGgfQ~~sl~ 302 (319)
+|. .==+.+|++|+..+=.. ..+.|.|||.+...-
T Consensus 526 ~~~~~e~y~lg~FlvGAYQe~lg~~HNLfg~~~~v~v~~~~~g~~~i~~~~ 576 (634)
T PRK05354 526 ELDPGEPYYLGFFLVGAYQEILGDMHNLFGDTNAVHVRVDEDGGYEIEHVI 576 (634)
T ss_pred ccCCCCccEEEEEecchhhHhhccccccCCCCCEEEEEECCCCCEEEEEec
Confidence 121 11245799999988766 337788899886653
No 382
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.84 E-value=1.1e+02 Score=28.10 Aligned_cols=34 Identities=12% Similarity=-0.086 Sum_probs=30.5
Q ss_pred CCCeEecCCCChHHHHHHHHcCCcEeecCCcccc
Q psy14115 85 DKPRYVMGIGFAVDLLICCALGADMFDCVFPTRT 118 (319)
Q Consensus 85 dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~ 118 (319)
.++.++..+-.|.++..+..+|||.+-+.+|...
T Consensus 201 g~~v~~WTVn~~~~~~~l~~~GVdgIiTD~P~~~ 234 (235)
T cd08565 201 GLRLGVWTVNDDSLIRYWLACGVRQLTTDRPDLA 234 (235)
T ss_pred CCEEEEEccCCHHHHHHHHHcCCCEEEeCCcccc
Confidence 5778888999999999999999999999999753
No 383
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=21.67 E-value=87 Score=29.89 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=31.2
Q ss_pred CCCeEecCCCChHHHHHHHHcCCcEeecCCccccC
Q psy14115 85 DKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTA 119 (319)
Q Consensus 85 dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~Ptr~A 119 (319)
..+.++-.|-+|.++..++.+|||.+-+.+|....
T Consensus 261 G~~v~vWTVNd~~~~~~l~~~GVdgIiTD~P~~l~ 295 (300)
T cd08612 261 GIQVYGWVLNDEEEFERAFELGADGVMTDYPTKLR 295 (300)
T ss_pred CCEEEEeecCCHHHHHHHHhcCCCEEEeCCHHHHH
Confidence 56788889999999999999999999999998643
No 384
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=21.63 E-value=3.9e+02 Score=24.56 Aligned_cols=66 Identities=18% Similarity=0.107 Sum_probs=47.4
Q ss_pred HHHHHhCCCceEEeCCCCC-CCCHHHHHHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEeecC
Q psy14115 46 AHQMVEKDVNGFAVGGLSG-GEAKEDFWYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 46 ~~~l~~~~~~G~aIgGl~~-ge~~~e~~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~~ 113 (319)
++.+.+.+++-+.|-++.. ++....-++++..+.+.+ +-|..+- |+.+++++..+++.|+|.+...
T Consensus 36 a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~~Ga~~Viig 103 (253)
T PRK02083 36 AKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLRAGADKVSIN 103 (253)
T ss_pred HHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 3444567888888888864 334455566777766665 4677775 6899999999999999986444
No 385
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=21.53 E-value=7.3e+02 Score=23.83 Aligned_cols=102 Identities=17% Similarity=0.187 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhcCCCCCceeeeccC-CCCHHHHHHHHHHHHhCCCc--eE---Ee-----CCCC----CCCCHHHHHHH
Q psy14115 10 TVRWLDRCLAAHRNPTTQNIFPIVQG-GLDEALRKDCAHQMVEKDVN--GF---AV-----GGLS----GGEAKEDFWYS 74 (319)
Q Consensus 10 T~rWl~r~~~~~~~~~~q~lfgiVqG-G~~~dlR~~s~~~l~~~~~~--G~---aI-----gGl~----~ge~~~e~~~i 74 (319)
+.+|++-....++. +-....+++.| |-..+-|.+.++.+.+.+.. || .- .|.. ...+.++..++
T Consensus 180 ~~~~l~~i~~a~~~-Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~ 258 (340)
T TIGR03699 180 SEEWLEVMETAHKL-GLPTTATMMFGHVETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTEYLKV 258 (340)
T ss_pred HHHHHHHHHHHHHc-CCCccceeEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHHHHHH
Confidence 44566544444432 11122233333 67777888888888876532 22 11 1221 12356889999
Q ss_pred HHHhhcCCCCCCCeEecCC---CChHHHHHHHHcCCcEeecCC
Q psy14115 75 VLVSINCLPKDKPRYVMGI---GFAVDLLICCALGADMFDCVF 114 (319)
Q Consensus 75 i~~~~~~LP~dkPr~l~Gv---g~P~~Il~~V~lGvD~FD~~~ 114 (319)
+..++-.+|. -|+..-|- |. ..-..+...|+|-++.+.
T Consensus 259 iA~~Rl~lp~-~~~i~~~~~~~g~-~~~~~~l~~Gan~~~g~~ 299 (340)
T TIGR03699 259 LAISRIFLDN-IPNIQASWVTQGK-EVGQLALHFGANDFGSTM 299 (340)
T ss_pred HHHHHHcCCC-CCcccCCccccCh-HHHHHHHhcCCccCCCcc
Confidence 9999999985 66644331 21 223567899999877653
No 386
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=21.44 E-value=4.1e+02 Score=25.93 Aligned_cols=74 Identities=12% Similarity=0.023 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHhCCCceEEe-CCCCCCCCHHHHHHHHHHhhcCCCCCCCeE-----------ecCCCChHHHHHHHHc
Q psy14115 38 DEALRKDCAHQMVEKDVNGFAV-GGLSGGEAKEDFWYSVLVSINCLPKDKPRY-----------VMGIGFAVDLLICCAL 105 (319)
Q Consensus 38 ~~dlR~~s~~~l~~~~~~G~aI-gGl~~ge~~~e~~~ii~~~~~~LP~dkPr~-----------l~Gvg~P~~Il~~V~l 105 (319)
++|.-.+.+++..+.++.-+.+ +|.....+.+.+.+++..+.+.+|.=.+.. ++|..+++.+..+-+.
T Consensus 80 ~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeA 159 (351)
T TIGR03700 80 SLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEA 159 (351)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 4555555666666677655544 444444445678889988888887333221 2455556667788889
Q ss_pred CCcEee
Q psy14115 106 GADMFD 111 (319)
Q Consensus 106 GvD~FD 111 (319)
|+|.+-
T Consensus 160 Gld~~~ 165 (351)
T TIGR03700 160 GLDSMP 165 (351)
T ss_pred CCCcCC
Confidence 999765
No 387
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=21.20 E-value=1.2e+02 Score=27.11 Aligned_cols=31 Identities=26% Similarity=0.295 Sum_probs=28.4
Q ss_pred CCCeEecCCCChHHHHHHHHcCCcEeecCCc
Q psy14115 85 DKPRYVMGIGFAVDLLICCALGADMFDCVFP 115 (319)
Q Consensus 85 dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~P 115 (319)
.++.++..+-+|.++-.++.+|||.+-+.+|
T Consensus 190 G~~v~~wtvn~~~~~~~~~~~Gvd~i~TD~P 220 (220)
T cd08579 190 GKKVYVWTVNDPDDMQRYLAMGVDGIITDYP 220 (220)
T ss_pred CCEEEEEcCCCHHHHHHHHHcCCCEEeCCCC
Confidence 5788888999999999999999999988887
No 388
>PRK14429 acylphosphatase; Provisional
Probab=21.16 E-value=2.3e+02 Score=22.29 Aligned_cols=50 Identities=14% Similarity=0.048 Sum_probs=31.6
Q ss_pred ceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCC-------CCHHHHHHHHHHhhcC
Q psy14115 28 NIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGG-------EAKEDFWYSVLVSINC 81 (319)
Q Consensus 28 ~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~g-------e~~~e~~~ii~~~~~~ 81 (319)
.+.|.|||--+ |....+...+.++.||+- .++.| -+.+.+.+.+..+.+.
T Consensus 7 ~v~G~VQGVGF---R~~v~~~A~~~gl~G~V~-N~~dG~Vei~~qG~~~~i~~f~~~l~~g 63 (90)
T PRK14429 7 KLTGKVQGVGC---RRATLTKARALGVTGYVT-NCEDGSVEILAQGSDPAVDNLIAWCEVG 63 (90)
T ss_pred EEEEeecCeee---HHHHHHHHHHhCCEEEEE-ECCCCeEEEEEEeCHHHHHHHHHHHhhC
Confidence 57899999665 555555555678999862 22222 2455567777776655
No 389
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=21.15 E-value=98 Score=30.92 Aligned_cols=44 Identities=23% Similarity=0.147 Sum_probs=33.4
Q ss_pred HHHHHHhhcCCCCCCCeEec-CCCChHHHHHHHHcCCcEeecCCc
Q psy14115 72 WYSVLVSINCLPKDKPRYVM-GIGFAVDLLICCALGADMFDCVFP 115 (319)
Q Consensus 72 ~~ii~~~~~~LP~dkPr~l~-Gvg~P~~Il~~V~lGvD~FD~~~P 115 (319)
.+.|.++.+.+|.+.|.++- |+=+..||+.|+++|.|.+=..-|
T Consensus 260 ~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp 304 (360)
T COG1304 260 ADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRP 304 (360)
T ss_pred HHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHH
Confidence 34566667777777777764 789999999999999998654433
No 390
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=21.15 E-value=6e+02 Score=25.26 Aligned_cols=76 Identities=18% Similarity=0.098 Sum_probs=50.2
Q ss_pred cCCCCHHHHHHHHHHHHhCCCceEEeCCCCCC----------CCHHHHHHHHHHhhcCCCCCCCeEecC-CCChHHHHHH
Q psy14115 34 QGGLDEALRKDCAHQMVEKDVNGFAVGGLSGG----------EAKEDFWYSVLVSINCLPKDKPRYVMG-IGFAVDLLIC 102 (319)
Q Consensus 34 qGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~g----------e~~~e~~~ii~~~~~~LP~dkPr~l~G-vg~P~~Il~~ 102 (319)
-||...+.-.+-++.+.+.+++-+-+.+=... ..+..++..+..+.+.+ +.|....| +-+|+++-.+
T Consensus 246 ~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~ 323 (382)
T cd02931 246 EKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV--DVPVIMAGRMEDPELASEA 323 (382)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHH
Confidence 35777787778888888888888877542110 11112244555555554 46877764 6799999999
Q ss_pred HHcC-CcEee
Q psy14115 103 CALG-ADMFD 111 (319)
Q Consensus 103 V~lG-vD~FD 111 (319)
++.| +|++-
T Consensus 324 l~~g~~D~V~ 333 (382)
T cd02931 324 INEGIADMIS 333 (382)
T ss_pred HHcCCCCeee
Confidence 9987 67764
No 391
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.09 E-value=4.2e+02 Score=27.65 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=51.2
Q ss_pred HHHHHHHHhCCCceEEeCCCCCC------------CCH-HHHHHHHHHhhcC---CCCCCCeEec-CCCChHHHHHHHHc
Q psy14115 43 KDCAHQMVEKDVNGFAVGGLSGG------------EAK-EDFWYSVLVSINC---LPKDKPRYVM-GIGFAVDLLICCAL 105 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgGl~~g------------e~~-~e~~~ii~~~~~~---LP~dkPr~l~-Gvg~P~~Il~~V~l 105 (319)
.+-++.+.+.+.++.-+| .++| -+. ..+.++.+...+. .-.+.|...- |+-++-||+.|+++
T Consensus 295 ~e~a~~li~aGAd~I~vg-~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~ 373 (502)
T PRK07107 295 REGFRYLAEAGADFVKVG-IGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAM 373 (502)
T ss_pred HHHHHHHHHcCCCEEEEC-CCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHc
Confidence 345667778899998873 3333 111 1222233322211 1223677765 68999999999999
Q ss_pred CCc--EeecCCccccCcCCcceeccc
Q psy14115 106 GAD--MFDCVFPTRTARFGSALVRQG 129 (319)
Q Consensus 106 GvD--~FD~~~Ptr~Ar~G~alt~~G 129 (319)
|.| |..+.|.-..---|..+..+|
T Consensus 374 GA~~vm~G~~~ag~~espg~~~~~~g 399 (502)
T PRK07107 374 GADFIMLGRYFARFDESPTNKVNING 399 (502)
T ss_pred CCCeeeeChhhhccccCCCcEEEECC
Confidence 999 456666655554566655444
No 392
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=21.08 E-value=4.6e+02 Score=25.40 Aligned_cols=74 Identities=12% Similarity=0.084 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhCCCceEEeCCCCCC----CCHHHHHHHHHHhhcCCCCCCCeEecC--CCChHHHHHHHHcCCcEee
Q psy14115 38 DEALRKDCAHQMVEKDVNGFAVGGLSGG----EAKEDFWYSVLVSINCLPKDKPRYVMG--IGFAVDLLICCALGADMFD 111 (319)
Q Consensus 38 ~~dlR~~s~~~l~~~~~~G~aIgGl~~g----e~~~e~~~ii~~~~~~LP~dkPr~l~G--vg~P~~Il~~V~lGvD~FD 111 (319)
+++.-.+-++.+.+.++.-+.|-|...+ ...+.+.++|..+.+..|.-..+.+.. .|+...+-...+.|.|+|-
T Consensus 92 ~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv~~ 171 (302)
T TIGR00510 92 DPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDVYN 171 (302)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHHHcCchhhc
Confidence 5566677788888888877776654221 224678999999988888655555433 3445555566778888653
No 393
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=21.03 E-value=2.1e+02 Score=27.39 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=9.8
Q ss_pred CHHHHHHHHHHHHhCCCceEEeC
Q psy14115 38 DEALRKDCAHQMVEKDVNGFAVG 60 (319)
Q Consensus 38 ~~dlR~~s~~~l~~~~~~G~aIg 60 (319)
..+-..+.++.+.+.++++..+.
T Consensus 191 t~e~~~~t~~~l~~l~~d~i~i~ 213 (302)
T TIGR01212 191 DREEMMETAKIVSLLDVDGIKIH 213 (302)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEE
Confidence 33334444444444444444433
No 394
>PRK08444 hypothetical protein; Provisional
Probab=20.98 E-value=4.1e+02 Score=26.31 Aligned_cols=73 Identities=11% Similarity=0.055 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHhCCCceEE-eCCCCCCCCHHHHHHHHHHhhcCCCCCCCeE-----------ecCCCChHHHHHHHH
Q psy14115 37 LDEALRKDCAHQMVEKDVNGFA-VGGLSGGEAKEDFWYSVLVSINCLPKDKPRY-----------VMGIGFAVDLLICCA 104 (319)
Q Consensus 37 ~~~dlR~~s~~~l~~~~~~G~a-IgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~-----------l~Gvg~P~~Il~~V~ 104 (319)
+.+|.-.+.+++..+.++.=+. +||..+..+.+.+.+++..+.+.+|.=.+-- ..|....+.+-.+-+
T Consensus 80 ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lke 159 (353)
T PRK08444 80 MSHEEILEIVKNSVKRGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLE 159 (353)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3455556666777777776555 4665544455677888888888777433322 345555566667777
Q ss_pred cCCcE
Q psy14115 105 LGADM 109 (319)
Q Consensus 105 lGvD~ 109 (319)
.|+|.
T Consensus 160 AGl~~ 164 (353)
T PRK08444 160 YGVDS 164 (353)
T ss_pred hCccc
Confidence 78774
No 395
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=20.93 E-value=1.3e+02 Score=29.18 Aligned_cols=46 Identities=30% Similarity=0.335 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCC---CChHHHHHHHHcCCcEeecC
Q psy14115 60 GGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGI---GFAVDLLICCALGADMFDCV 113 (319)
Q Consensus 60 gGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gv---g~P~~Il~~V~lGvD~FD~~ 113 (319)
||..--.++++..++-+.+ .+| ++|+ |+-.++..++++|+|++|++
T Consensus 46 ~~v~R~~~~~~I~~Ik~~V--~iP------VIGi~K~~~~~Ea~~L~eaGvDiIDaT 94 (283)
T cd04727 46 GGVARMADPKMIKEIMDAV--SIP------VMAKVRIGHFVEAQILEALGVDMIDES 94 (283)
T ss_pred CCeeecCCHHHHHHHHHhC--CCC------eEEeeehhHHHHHHHHHHcCCCEEecc
No 396
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=20.93 E-value=1.2e+02 Score=27.11 Aligned_cols=31 Identities=13% Similarity=-0.043 Sum_probs=27.8
Q ss_pred CCCeEecCCCChHHHHHHHHcCCcEeecCCc
Q psy14115 85 DKPRYVMGIGFAVDLLICCALGADMFDCVFP 115 (319)
Q Consensus 85 dkPr~l~Gvg~P~~Il~~V~lGvD~FD~~~P 115 (319)
.++.++-.+-++.++-.++++|||.+-+.+|
T Consensus 199 g~~v~~wTvn~~~~~~~~~~~gVdgiiTD~p 229 (229)
T cd08562 199 GYKLLVYTVNDPARAAELLEWGVDAIFTDRP 229 (229)
T ss_pred CCEEEEEeCCCHHHHHHHHHCCCCEEEcCCC
Confidence 5677888899999999999999999998887
No 397
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=20.86 E-value=4.4e+02 Score=28.08 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=51.6
Q ss_pred CCCceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCC--------CCCCCHHHHHHHHHHhhcCCCCCCCeEec--C--
Q psy14115 25 TTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGL--------SGGEAKEDFWYSVLVSINCLPKDKPRYVM--G-- 92 (319)
Q Consensus 25 ~~q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl--------~~ge~~~e~~~ii~~~~~~LP~dkPr~l~--G-- 92 (319)
..|++++. ....+-..+.++.|.+.++.-+-++|= -.++++ |+.+..+.+..|. .+...+ |
T Consensus 9 G~Qs~~~~---~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~---~e~l~~l~~~~~~-~~l~~L~Rg~N 81 (582)
T TIGR01108 9 AHQSLFAT---RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDP---WERLRELKKALPN-TPLQMLLRGQN 81 (582)
T ss_pred cccccCCc---cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCH---HHHHHHHHHhCCC-CEEEEEEcccc
Confidence 35777643 367788888999999999998888741 123444 4555555555553 323222 3
Q ss_pred -CC---ChHHH-----HHHHHcCCcEeecC
Q psy14115 93 -IG---FAVDL-----LICCALGADMFDCV 113 (319)
Q Consensus 93 -vg---~P~~I-----l~~V~lGvD~FD~~ 113 (319)
+| +|.++ -.+++.|+|+|-..
T Consensus 82 ~~G~~~ypddvv~~~v~~a~~~Gvd~irif 111 (582)
T TIGR01108 82 LLGYRHYADDVVERFVKKAVENGMDVFRIF 111 (582)
T ss_pred ccccccCchhhHHHHHHHHHHCCCCEEEEE
Confidence 23 47664 45899999975443
No 398
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=20.47 E-value=5.9e+02 Score=24.76 Aligned_cols=84 Identities=18% Similarity=0.138 Sum_probs=56.3
Q ss_pred ceeeeccCCCCHHHHHHHHHHHHhCCCceEEeC-------------CCCCCCCHHHHHHHHHHhhcCCCCCCCeEe-c--
Q psy14115 28 NIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVG-------------GLSGGEAKEDFWYSVLVSINCLPKDKPRYV-M-- 91 (319)
Q Consensus 28 ~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIg-------------Gl~~ge~~~e~~~ii~~~~~~LP~dkPr~l-~-- 91 (319)
..+++-.+|.+++.-.++++.+.+.+++++=|- |.....+++...++|..+.+.++ .|.-+ +
T Consensus 55 ~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~--~PVsvKiR~ 132 (318)
T TIGR00742 55 SPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVN--IPVTVKHRI 132 (318)
T ss_pred CcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhC--CCeEEEEec
Confidence 456677788999998899998887777766532 22333567788899999888764 67665 3
Q ss_pred CCCCh---H---H-HHHHHHcCCcEeecC
Q psy14115 92 GIGFA---V---D-LLICCALGADMFDCV 113 (319)
Q Consensus 92 Gvg~P---~---~-Il~~V~lGvD~FD~~ 113 (319)
|.-.. . + +-.+...|+|.++.-
T Consensus 133 g~~~~~~~~~~~~~~~~l~~~G~~~itvH 161 (318)
T TIGR00742 133 GIDPLDSYEFLCDFVEIVSGKGCQNFIVH 161 (318)
T ss_pred CCCCcchHHHHHHHHHHHHHcCCCEEEEe
Confidence 43211 2 2 334557999998544
No 399
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=20.47 E-value=2.5e+02 Score=29.28 Aligned_cols=79 Identities=18% Similarity=0.208 Sum_probs=55.0
Q ss_pred CCceeeeccC---CCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHH
Q psy14115 26 TQNIFPIVQG---GLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLIC 102 (319)
Q Consensus 26 ~q~lfgiVqG---G~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~ 102 (319)
...+|++|-= =.-.|++.+++.++.+.+.. ++|=|. | ...+...+....+..|. +....+|..+.+...
T Consensus 293 ~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~-~vilG~--g--d~~le~~~~~la~~~~~---~~~~~i~~~~~la~~ 364 (487)
T COG0297 293 PGPLFGFVSRLTAQKGLDLLLEAIDELLEQGWQ-LVLLGT--G--DPELEEALRALASRHPG---RVLVVIGYDEPLAHL 364 (487)
T ss_pred CCcEEEEeeccccccchhHHHHHHHHHHHhCce-EEEEec--C--cHHHHHHHHHHHHhcCc---eEEEEeeecHHHHHH
Confidence 3467776621 02236999999999998844 344443 2 34555666666666775 666788999999999
Q ss_pred HHcCCcEeec
Q psy14115 103 CALGADMFDC 112 (319)
Q Consensus 103 V~lGvD~FD~ 112 (319)
++.|.|+|=-
T Consensus 365 i~agaD~~lm 374 (487)
T COG0297 365 IYAGADVILM 374 (487)
T ss_pred HHhcCCEEEe
Confidence 9999999854
No 400
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=20.41 E-value=2.3e+02 Score=27.19 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=38.8
Q ss_pred HHHHHHHhCCCceEE--eCCCCCCC---CHHHHHHHHHHhhcCCCCCCCeEecCC-CChHH-HHHHHHcCCc
Q psy14115 44 DCAHQMVEKDVNGFA--VGGLSGGE---AKEDFWYSVLVSINCLPKDKPRYVMGI-GFAVD-LLICCALGAD 108 (319)
Q Consensus 44 ~s~~~l~~~~~~G~a--IgGl~~ge---~~~e~~~ii~~~~~~LP~dkPr~l~Gv-g~P~~-Il~~V~lGvD 108 (319)
++.+.+.+.+++-+| ||...+.. .+.--++.++.+.+.+ +.|.-+.|- |.|.+ +..++..||=
T Consensus 152 ~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~ 221 (276)
T cd00947 152 EAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV--NVPLVLHGGSGIPDEQIRKAIKLGVC 221 (276)
T ss_pred HHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCe
Confidence 344444456788777 44332211 2333455666666666 488888876 88855 8899999883
No 401
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=20.39 E-value=3.7e+02 Score=24.12 Aligned_cols=65 Identities=20% Similarity=0.133 Sum_probs=41.6
Q ss_pred HHHHHHHhCCCceEEeCCCCCCC-CHHHHHHHHHHhhcCCCCCCCeEe-cCCCChHHHHHHHHcCCcEe
Q psy14115 44 DCAHQMVEKDVNGFAVGGLSGGE-AKEDFWYSVLVSINCLPKDKPRYV-MGIGFAVDLLICCALGADMF 110 (319)
Q Consensus 44 ~s~~~l~~~~~~G~aIgGl~~ge-~~~e~~~ii~~~~~~LP~dkPr~l-~Gvg~P~~Il~~V~lGvD~F 110 (319)
+.++.+.+.+++.+.|-.+..-. ....-.++++.+.+.. +.|..+ =|+-+++++-.+.+.|+|.+
T Consensus 32 ~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~v 98 (230)
T TIGR00007 32 EAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRV 98 (230)
T ss_pred HHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEE
Confidence 35566667778777765554321 1222234444444443 367777 36789999999999999965
No 402
>PRK04302 triosephosphate isomerase; Provisional
Probab=20.25 E-value=4.4e+02 Score=23.87 Aligned_cols=64 Identities=13% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCCChHHHHHHHHcCCcEe
Q psy14115 43 KDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMF 110 (319)
Q Consensus 43 ~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg~P~~Il~~V~lGvD~F 110 (319)
..+++.+.+.+++|..++...--...++..+.+..+.+. .-..++-++++.++..+...|.|++
T Consensus 75 ~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~----Gl~~I~~v~~~~~~~~~~~~~~~~I 138 (223)
T PRK04302 75 HILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKL----GLESVVCVNNPETSAAAAALGPDYV 138 (223)
T ss_pred hhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHC----CCeEEEEcCCHHHHHHHhcCCCCEE
No 403
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=20.24 E-value=3e+02 Score=26.58 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=40.5
Q ss_pred hCCCceEEeC--CC---CCCCCHHHHHHHHHHhhcCCCCCCCeEecCC-CC-hHHHHHHHHcCCcEeecC
Q psy14115 51 EKDVNGFAVG--GL---SGGEAKEDFWYSVLVSINCLPKDKPRYVMGI-GF-AVDLLICCALGADMFDCV 113 (319)
Q Consensus 51 ~~~~~G~aIg--Gl---~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gv-g~-P~~Il~~V~lGvD~FD~~ 113 (319)
+.+++-+|+| -. -.+.++..-++.++.+.+.++ +.|..+.|- |. ++++..++..||+-+-..
T Consensus 164 ~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~ 232 (293)
T PRK07315 164 ETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGIPDDQIQEAIKLGVAKVNVN 232 (293)
T ss_pred HcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCCCHHHHHHHHHcCCCEEEEc
Confidence 6678877777 43 222233334556666666663 488888876 54 566889999999865443
No 404
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=20.04 E-value=1.4e+02 Score=27.15 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=54.1
Q ss_pred CceeeeccCCCCHHHHHHHHHHHHhCCCceEEeCCCCCCCCHHHHHHHHHHhhcCCCCCCCeEecCCC---ChHHHHHHH
Q psy14115 27 QNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIG---FAVDLLICC 103 (319)
Q Consensus 27 q~lfgiVqGG~~~dlR~~s~~~l~~~~~~G~aIgGl~~ge~~~e~~~ii~~~~~~LP~dkPr~l~Gvg---~P~~Il~~V 103 (319)
+.+.+|+.+ .+.+.=..-++.|.+-++.-+-|-=-+ ..-.++|+.+.+..| ..+.|+| ++++.-.++
T Consensus 8 ~~iiaVir~-~~~~~a~~~~~al~~gGi~~iEiT~~t-----~~a~~~I~~l~~~~p----~~~vGAGTV~~~e~a~~a~ 77 (196)
T PF01081_consen 8 NKIIAVIRG-DDPEDAVPIAEALIEGGIRAIEITLRT-----PNALEAIEALRKEFP----DLLVGAGTVLTAEQAEAAI 77 (196)
T ss_dssp HSEEEEETT-SSGGGHHHHHHHHHHTT--EEEEETTS-----TTHHHHHHHHHHHHT----TSEEEEES--SHHHHHHHH
T ss_pred CCEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEecCC-----ccHHHHHHHHHHHCC----CCeeEEEeccCHHHHHHHH
Confidence 358899997 667767788888999888877765422 234556665555554 4667877 588899999
Q ss_pred HcCCcEeecCC
Q psy14115 104 ALGADMFDCVF 114 (319)
Q Consensus 104 ~lGvD~FD~~~ 114 (319)
++|.+.+-++-
T Consensus 78 ~aGA~FivSP~ 88 (196)
T PF01081_consen 78 AAGAQFIVSPG 88 (196)
T ss_dssp HHT-SEEEESS
T ss_pred HcCCCEEECCC
Confidence 99999987664
Done!