RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14115
(319 letters)
>gnl|CDD|216654 pfam01702, TGT, Queuine tRNA-ribosyltransferase. This is a family
of queuine tRNA-ribosyltransferases EC:2.4.2.29, also
known as tRNA-guanine transglycosylase and guanine
insertion enzyme. Queuine tRNA-ribosyltransferase
modifies tRNAs for asparagine, aspartic acid, histidine
and tyrosine with queuine. It catalyzes the exchange of
guanine-34 at the wobble position with
7-aminomethyl-7-deazaguanine, and the addition of a
cyclopentenediol moiety to
7-aminomethyl-7-deazaguanine-34 tRNA; giving a
hypermodified base queuine in the wobble position. The
aligned region contains a zinc binding motif
C-x-C-x2-C-x29-H, and important tRNA and
7-aminomethyl-7deazaguanine binding residues.
Length = 237
Score = 264 bits (678), Expect = 9e-89
Identities = 101/209 (48%), Positives = 136/209 (65%), Gaps = 2/209 (0%)
Query: 2 RVAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGG 61
R + +RT+RW DRCL AH+ Q +F IVQGGL E LR++ A ++ E +G+A+GG
Sbjct: 30 RAEKSVERTLRWADRCLEAHKRKG-QALFGIVQGGLYEDLREESAEELAEDGFDGYAIGG 88
Query: 62 LSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARF 121
LS GE KE+ V LP+DKPRY+MG+G D+L ALG DMFDCV PTR AR
Sbjct: 89 LSVGEEKEEMLELVDAVTPLLPEDKPRYLMGVGTPEDILEAVALGVDMFDCVSPTRYARN 148
Query: 122 GSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLLSVHN 180
G AL G + LK Y DF P+D C C TC +Y+RAYLHH + E LL++HN
Sbjct: 149 GRALTFDGTINLKNARYKLDFRPLDPPCDCYTCRKYSRAYLHHLLKAKEMLGSRLLTIHN 208
Query: 181 IAFQMRLMREIRESIKEQRFPQYVKQYMK 209
+ + +RLMREIRE+I+E F +YV+++++
Sbjct: 209 LHYYLRLMREIREAIEEGTFEEYVEEFLR 237
>gnl|CDD|234642 PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.
Length = 366
Score = 255 bits (655), Expect = 2e-83
Identities = 92/212 (43%), Positives = 130/212 (61%), Gaps = 4/212 (1%)
Query: 2 RVAIAKDRTVRWLDRCLAAH-RNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVG 60
+ +RT+RW +R AH R Q +F IVQGG+ E LR++ A +VE D +G+A+G
Sbjct: 156 YAKKSMERTLRWAERSRDAHDRLENDQALFGIVQGGVYEDLRRESAKGLVEIDFDGYAIG 215
Query: 61 GLSGGEAKEDFWYSVL-VSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTA 119
GLS GE KE+ Y +L + LP+DKPRY+MG+G DL+ A G DMFDCV PTR A
Sbjct: 216 GLSVGEPKEEM-YRILEHTAPLLPEDKPRYLMGVGTPEDLVEGVARGVDMFDCVMPTRNA 274
Query: 120 RFGSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLLSV 178
R G+ G+L ++ +Y D P+D +C C TC Y+RAYLHH E L ++
Sbjct: 275 RNGTLFTSFGRLNIRNAKYKEDTRPLDPECDCYTCRNYSRAYLHHLFRAGEILGARLNTI 334
Query: 179 HNIAFQMRLMREIRESIKEQRFPQYVKQYMKD 210
HN+ + RLM EIRE+I+E RF ++ ++ +
Sbjct: 335 HNLHYYQRLMEEIREAIEEGRFEEFRAEFYER 366
Score = 90.5 bits (226), Expect = 1e-20
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQSP 317
G++++KK GGLHKFM W +LTDSGGFQ+ SL +ITEEGV F+S
Sbjct: 68 GLEIIKKHGGLHKFMNWDGPILTDSGGFQVFSLSDLRKITEEGVTFRSH 116
>gnl|CDD|223420 COG0343, Tgt, Queuine/archaeosine tRNA-ribosyltransferase
[Translation, ribosomal structure and biogenesis].
Length = 372
Score = 246 bits (631), Expect = 1e-79
Identities = 96/221 (43%), Positives = 137/221 (61%), Gaps = 4/221 (1%)
Query: 2 RVAIAKDRTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGG 61
+ +RT+RW +R L AH+ Q +F IVQGG E LR+ A ++ E D +G+A+GG
Sbjct: 152 YAEKSVERTLRWAERSLEAHKRLNDQALFGIVQGGTYEDLRRRSAEELNELDFDGYAIGG 211
Query: 62 LSGGEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARF 121
LS GE KED + + LP+DKPRY+MG+G D++ ALG DMFDCV PTR AR
Sbjct: 212 LSVGEPKEDMVRILEATKPLLPEDKPRYLMGVGHPEDIVEAVALGVDMFDCVMPTRYARN 271
Query: 122 GSALVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHHIATV-EPSACHLLSVHN 180
G L R G++ ++ + A D P+D C C TC Y+RAYL H+ E LL++HN
Sbjct: 272 GRLLTRDGRVNIRNAKLAEDTRPLDEPCSCPTCRNYSRAYLRHLRRANEELGARLLTIHN 331
Query: 181 IAFQMRLMREIRESIKEQRFPQYVKQYMKDAYP--DENYPR 219
+ F +RLM+EIR++IKE RF ++V+++ + +P Y R
Sbjct: 332 LYFYLRLMKEIRQAIKEGRFLEFVEEFAE-KHPRLLPAYRR 371
Score = 73.5 bits (181), Expect = 1e-14
Identities = 28/51 (54%), Positives = 37/51 (72%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQSPNN 319
G++++ GGLHKFMGW +LTDSGGFQ+ SL +ITEEGV F+S +
Sbjct: 64 GLEIVALLGGLHKFMGWDGPILTDSGGFQVFSLGDLRKITEEGVTFKSHID 114
>gnl|CDD|129522 TIGR00430, Q_tRNA_tgt, tRNA-guanine transglycosylase,
queuosine-34-forming. This tRNA-guanine
transglycosylase (tgt) catalyzes an exchange for the
guanine base at position 34 of many tRNAs; this
nucleotide is subsequently modified to queuosine. The
Archaea have a closely related enzyme that catalyzes a
base exchange for guanine at position 15 in some tRNAs,
a site that is subsequently converted to the
archaeal-specific modified base archaeosine
(7-formamidino-7-deazaguanosine), while Archaeoglobus
fulgidus has both enzymes [Protein synthesis, tRNA and
rRNA base modification].
Length = 368
Score = 212 bits (542), Expect = 2e-66
Identities = 92/206 (44%), Positives = 126/206 (61%), Gaps = 2/206 (0%)
Query: 6 AKDRTVRWLDRCLAAHRNPT-TQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSG 64
+ +RT+RW +RCL AH Q +F IVQGG E LR A ++E D G+A+GGLS
Sbjct: 156 STERTLRWAERCLEAHDRRGNKQALFGIVQGGTYEDLRSQSAEGLIELDFPGYAIGGLSV 215
Query: 65 GEAKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSA 124
GE KED + + LPKDKPRY+MG+G DLL G DMFDCV PTR AR G+
Sbjct: 216 GEPKEDMLRILEHTAPLLPKDKPRYLMGVGTPEDLLNAIRRGIDMFDCVMPTRNARNGTL 275
Query: 125 LVRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLLSVHNIAF 183
V +G++ +K +Y D P+D +C C TC Y+RAYL H I E L ++HN+ F
Sbjct: 276 FVTEGRINIKNAKYKDDTRPLDEECDCYTCKNYSRAYLRHLIRCNELLGARLATLHNLHF 335
Query: 184 QMRLMREIRESIKEQRFPQYVKQYMK 209
+RLM +IR++I E RF + ++++
Sbjct: 336 YLRLMEKIRQAILEDRFLSFRTEFLE 361
Score = 82.1 bits (203), Expect = 1e-17
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQSPNN 319
G ++K+ GGLHKFM W +LTDSGGFQ+ SL +I EEGV F+SP +
Sbjct: 64 GQKIVKELGGLHKFMQWDGPILTDSGGFQVFSLSDLRKIEEEGVHFKSPID 114
>gnl|CDD|129541 TIGR00449, tgt_general, tRNA-guanine family transglycosylase.
Different tRNA-guanine transglycosylases catalyze
different tRNA base modifications. Two guanine base
substitutions by different enzymes described by the
model are involved in generating queuosine at position
34 in bacterial tRNAs and archaeosine at position 15 in
archaeal tRNAs. This model is designed for fragment
searching, so the superfamily is used loosely [Protein
synthesis, tRNA and rRNA base modification].
Length = 367
Score = 210 bits (536), Expect = 1e-65
Identities = 84/209 (40%), Positives = 119/209 (56%), Gaps = 2/209 (0%)
Query: 9 RTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAK 68
RT+RW + L H+ +F IVQGG LR+ A + E D +G+A+GG+S GE K
Sbjct: 159 RTLRWAEESLEYHKRRNENALFGIVQGGTYPDLRRQSAEGLAELDFDGYAIGGVSVGEPK 218
Query: 69 EDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQ 128
D + LPKDKPRY+MG+G L +LG DMFDCV PTR AR G+ L +
Sbjct: 219 RDMLRILEHVAPLLPKDKPRYLMGVGTPELLANAVSLGIDMFDCVAPTRYARNGTLLTTE 278
Query: 129 GQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLLSVHNIAFQMRL 187
G++++K +Y D P+D C C C Y+RAYL H I E L + HN+ F RL
Sbjct: 279 GRIKIKNAKYKDDTRPLDEPCDCYVCKNYSRAYLRHLIRCNELLGARLATEHNLHFSFRL 338
Query: 188 MREIRESIKEQRFPQYVKQYMKDAYPDEN 216
+ +IR++I E R +V+++++ AY
Sbjct: 339 IEKIRQAILEDRLLSFVEEFLE-AYGRLL 366
Score = 75.1 bits (185), Expect = 3e-15
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEITEEGVKFQSPNN 319
G ++ GGLHKFM W +LTDSGGFQ+ SL +I EEGV F+SP +
Sbjct: 64 GQKIVALLGGLHKFMQWDGPILTDSGGFQVFSLGDLRKIEEEGVHFKSPID 114
>gnl|CDD|134464 PRK01008, PRK01008, queuine tRNA-ribosyltransferase; Provisional.
Length = 372
Score = 151 bits (382), Expect = 7e-43
Identities = 67/195 (34%), Positives = 105/195 (53%), Gaps = 4/195 (2%)
Query: 8 DRTVRWLDRCLAAHR-NPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGE 66
RT W R L H NP Q+++ ++ GG+D RK + + +G A+GG S G+
Sbjct: 178 QRTYVWEKRSLDYHLKNPRHQSMYGVIHGGIDPDQRKIGCKFVEDLPFDGSAIGG-SLGK 236
Query: 67 AKEDFWYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALV 126
++ V V+ + L K++P +++GIG + G D FD +PT+ AR G L
Sbjct: 237 NLQEMVEVVGVTTSNLSKERPVHLLGIGDLPSIWATVGFGIDSFDSSYPTKAARHGLILT 296
Query: 127 RQGQLQLKRDEYATDFTPIDNQCPCSTC-ARYTRAYLHHIATV-EPSACHLLSVHNIAFQ 184
+QG L++ Y++D PI+ C C C + +RAYL H+ V EP+A S+HN+
Sbjct: 297 KQGPLKINNQRYSSDLNPIEPGCSCLACSSGISRAYLRHLFKVHEPNAGIWASIHNLHHM 356
Query: 185 MRLMREIRESIKEQR 199
++M+EIRE I R
Sbjct: 357 QQVMKEIREQILNDR 371
Score = 51.7 bits (124), Expect = 2e-07
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 18/66 (27%)
Query: 269 GVDVLKKAGGLHKFMGWKRALLTDSGGFQMVSL--------LK----------FAEITEE 310
G + + GGLH+F+G ++TDSGGFQ+ SL +K +IT+E
Sbjct: 66 GTEAIAAMGGLHQFIGRNAPIITDSGGFQIFSLAYGSVAEEIKSCGKKKGGSSILKITDE 125
Query: 311 GVKFQS 316
GV F+S
Sbjct: 126 GVWFKS 131
>gnl|CDD|237418 PRK13534, PRK13534, 7-cyano-7-deazaguanine tRNA-ribosyltransferase;
Provisional.
Length = 639
Score = 60.0 bits (146), Expect = 5e-10
Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 25/183 (13%)
Query: 33 VQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDFWYSVLV-----SINCLPKDKP 87
VQG LR+ A +M + + + + +G + E + Y LV S LP +KP
Sbjct: 161 VQGSTYPDLRQKSAEEMSKMNFDIYPIGAVV--PLMESYRYRDLVDIIINSKMHLPTNKP 218
Query: 88 RYVMGIG----FAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFT 143
++ G G FA + ALG D+FD A+ L +G L L+ +
Sbjct: 219 VHLFGAGHPMFFA----LAVALGCDLFDSAAYALYAKDDRYLTPEGTLHLEELKE----F 270
Query: 144 PIDNQCPCSTCARYTRAYLHHIATVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQY 203
P C C C++YT L + E + LL+ HN+ + I+++IKE +
Sbjct: 271 P----CSCPVCSKYTPKELREMPKEERT--RLLAEHNLYVIFEEINRIKQAIKEGSLWEL 324
Query: 204 VKQ 206
V++
Sbjct: 325 VEE 327
Score = 31.1 bits (71), Expect = 0.89
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 278 GLHKFMGWKRALLTDSGGFQMVSLLKFAEIT---EEGVKFQ 315
G+H +G+ ++TDSG FQ L + ++ E ++FQ
Sbjct: 73 GIHSLIGFDGPIMTDSGSFQ---LSVYGDVEVTNREIIEFQ 110
>gnl|CDD|232972 TIGR00432, arcsn_tRNA_tgt, tRNA-guanine transglycosylase,
archaeosine-15-forming. This tRNA-guanine
transglycosylase (tgt) differs from the tgt of E. coli
and other Bacteria in the site of action and the
modification that results. It exchanges
7-cyano-7-deazaguanine (preQ0) with guanine at position
15 of archaeal tRNA; this nucleotide is subsequently
converted to archaeosine, found exclusively in the
Archaea. This enzyme from Haloferax volcanii has been
purified, characterized, and partially sequenced and is
the basis for identifying this family. In contrast,
bacterial tgt catalyzes the exchange of preQ0 or preQ1
for the guanine base at position 34; this nucleotide is
subsequently modified to queuosine. Archeoglobus
fulgidus has both enzymes, while some other Archaea have
just this one [Protein synthesis, tRNA and rRNA base
modification].
Length = 540
Score = 54.6 bits (131), Expect = 2e-08
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 12/185 (6%)
Query: 32 IVQGGLDEALRKDCAHQMVEKDVNGFAVGG---LSGGEAKEDFWYSVLVSINCLPKDKPR 88
VQG LR+ A + + + + +G L D +L S + LP +P
Sbjct: 59 PVQGSTHPDLRRFAAGEAAKLGGDIYPIGAVVPLMEAYRYRDLARVILESRSALPPVEPI 118
Query: 89 YVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTPIDNQ 148
++ G G + + ALG D+FD A+ L G +L +E + P
Sbjct: 119 HLFGCGHPMLFALAVALGCDLFDSAAYALYAKDDRYLTVYGTKKL--EELNLQYFP---- 172
Query: 149 CPCSTCARYTRAYLHHIATVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYM 208
C C C+ YT L + E L++ HN+ + + I+++IK+ + V++ +
Sbjct: 173 CSCPVCSNYTPEELRRMEKNERE--RLIAEHNLYVSFQEIETIKQAIKDGSLFELVEERV 230
Query: 209 KDAYP 213
+ A+P
Sbjct: 231 R-AHP 234
>gnl|CDD|237417 PRK13533, PRK13533, 7-cyano-7-deazaguanine tRNA-ribosyltransferase;
Provisional.
Length = 487
Score = 51.0 bits (123), Expect = 3e-07
Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 43/201 (21%)
Query: 33 VQGGLDEALRKDCAHQMVEKDVNGFAVGG----LSGGEAKEDFWYSVLVSI-----NCLP 83
VQGG LR++ A + + + + +G + E + Y LV + L
Sbjct: 164 VQGGTYPDLREESAREASKLGFDVYPIGAVVPLM------ERYRYDDLVDVVLAAKRGLG 217
Query: 84 KDKPRYVMGIG------FAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQLQLKRDE 137
P ++ G G AV ALG D+FD AR G L G +L+ E
Sbjct: 218 PGAPVHLFGAGHPMMFALAV------ALGCDLFDSAAYALYARDGRYLTVTGTYRLEDLE 271
Query: 138 YATDFTPIDNQCPCSTCARYTRAYLHHIATVEPSACHLLSVHNIAFQMRLMREIRESIKE 197
Y P C C C++YT L + E LL+ HN+ +R I+++IKE
Sbjct: 272 Y----LP----CSCPVCSKYTPKELREMPAEERE--RLLAEHNLYVTFEEIRRIKQAIKE 321
Query: 198 QRFPQYVKQ------YMKDAY 212
R + V++ + DA+
Sbjct: 322 GRLWELVEERARSHPSLLDAF 342
Score = 40.2 bits (95), Expect = 9e-04
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 275 KAGGLHKFMGWKRALLTDSGGFQMVSLLKFAEI---TEEGVKFQ 315
GLHK +G+ ++TDSG +Q LL + ++ EE ++FQ
Sbjct: 71 LEKGLHKLLGFDGPIMTDSGSYQ---LLVYGDVEVTNEEILEFQ 111
>gnl|CDD|100090 cd03088, ManB, ManB is a bacterial phosphomannomutase (PMM) that
catalyzes the conversion of mannose 6-phosphate to
mannose-1-phosphate in the second of three steps in the
GDP-mannose pathway, in which GDP-D-mannose is
synthesized from fructose-6-phosphate. In Mycobacterium
tuberculosis, the causative agent of tuberculosis, PMM
is involved in the biosynthesis of mannosylated
lipoglycans that participate in the association of
mycobacteria with host macrophage phagocytic receptors.
ManB belongs to the the alpha-D-phosphohexomutase
superfamily which includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Other members of this
superfamily include the phosphoglucomutases (PGM1 and
PGM2), phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 459
Score = 28.3 bits (64), Expect = 5.8
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 139 ATDFTPIDNQCPCSTCARYTRAYLHHIATVEP 170
TD T C YTRA+L H+ + P
Sbjct: 11 VTDLTD-------EVCYAYTRAFLQHLESKFP 35
>gnl|CDD|180780 PRK06965, PRK06965, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 587
Score = 28.2 bits (63), Expect = 6.4
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 6/30 (20%)
Query: 7 KDRTVRWLDRCLAAHRNPTTQNIFPIVQGG 36
KDRTV +LD + T+N++P+VQ G
Sbjct: 551 KDRTV-FLD-----FQTDPTENVWPMVQAG 574
>gnl|CDD|240365 PTZ00333, PTZ00333, triosephosphate isomerase; Provisional.
Length = 255
Score = 27.6 bits (62), Expect = 9.1
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 32 IVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDF 71
I+ GG K+C + + D++GF VGG S K DF
Sbjct: 210 IIYGG--SVNEKNCKELIKQPDIDGFLVGGAS---LKPDF 244
>gnl|CDD|135660 PRK05927, PRK05927, hypothetical protein; Provisional.
Length = 350
Score = 27.5 bits (61), Expect = 9.2
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 188 MREIRESIKEQRFPQYVKQYMKDAYPDENY 217
++E +S+++QR+PQ Y+ DA P NY
Sbjct: 24 LQEHADSLRKQRYPQNTVTYVLDANP--NY 51
>gnl|CDD|182163 PRK09952, PRK09952, shikimate transporter; Provisional.
Length = 438
Score = 27.8 bits (62), Expect = 9.8
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 11/51 (21%)
Query: 54 VNGFAVGGLSGGEAKEDFWYSVLVSINCLPKDKPR-YVMG--IGFAVDLLI 101
+ GFAVGG GG A L+++ PK+K Y G +G+ V LL+
Sbjct: 134 IQGFAVGGEWGGAA--------LLAVESAPKNKKAFYSSGVQVGYGVGLLL 176
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.138 0.430
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,191,835
Number of extensions: 1529732
Number of successful extensions: 1666
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1641
Number of HSP's successfully gapped: 27
Length of query: 319
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 222
Effective length of database: 6,635,264
Effective search space: 1473028608
Effective search space used: 1473028608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.6 bits)