RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14115
(319 letters)
>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase
{Zymomonas mobilis [TaxId: 542]}
Length = 372
Score = 186 bits (474), Expect = 3e-57
Identities = 73/202 (36%), Positives = 115/202 (56%), Gaps = 1/202 (0%)
Query: 12 RWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDF 71
R D + +F I QG + E LR+ A + E +G+AVGGL+ GE +++
Sbjct: 171 RSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEM 230
Query: 72 WYSVLVSINCLPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSALVRQGQL 131
+ + S+ LP DKP Y+MG+G D++ G DMFDCV PTR+ R G A G +
Sbjct: 231 FRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPI 290
Query: 132 QLKRDEYATDFTPIDNQCPCSTCARYTRAYLHH-IATVEPSACHLLSVHNIAFQMRLMRE 190
++ ++ D P+D++C C+ C +++RAY+HH I E L++ HNIAF +LM++
Sbjct: 291 NIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEHNIAFYQQLMQK 350
Query: 191 IRESIKEQRFPQYVKQYMKDAY 212
IR+SI E RF Q+ + + +
Sbjct: 351 IRDSISEGRFSQFAQDFRARYF 372
>d1iq8a1 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine
transglycosylase, N-terminal domain {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 355
Score = 132 bits (333), Expect = 1e-36
Identities = 39/204 (19%), Positives = 78/204 (38%), Gaps = 13/204 (6%)
Query: 9 RTVRWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAK 68
+ + + +QG LR+ A ++ + +GG+
Sbjct: 139 KELEITLSRAREAEEIKEIPMNATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVVPLLES 198
Query: 69 EDFWYSVLVSINC---LPKDKPRYVMGIGFAVDLLICCALGADMFDCVFPTRTARFGSAL 125
F V + I+ L D+P ++ G G + + A+G D+FD A+ +
Sbjct: 199 YRFRDVVDIVISSKMALRPDRPVHLFGAGHPIVFALAVAMGVDLFDSASYALYAKDDRYM 258
Query: 126 VRQGQLQLKRDEYATDFTPIDNQCPCSTCARYTRAYLHHIATVEPSACHLLSVHNIAFQM 185
+G +L +Y C C C++YT L + E LL++HN+
Sbjct: 259 TPEGTKRLDELDYF--------PCSCPVCSKYTPQELREMPKEE--RTRLLALHNLWVIK 308
Query: 186 RLMREIRESIKEQRFPQYVKQYMK 209
++ ++++IKE + V + +
Sbjct: 309 EEIKRVKQAIKEGELWRLVDERAR 332
>d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase,
PRAI {Thermus thermophilus [TaxId: 274]}
Length = 200
Score = 31.0 bits (69), Expect = 0.12
Identities = 15/140 (10%), Positives = 32/140 (22%), Gaps = 5/140 (3%)
Query: 92 GIGFAVDLLICCALGADMFDCVFPTRTARFGS--ALVRQGQLQLKRDEYATDFTPIDNQC 149
GI D L+ ALGA V + R + A G+ F +
Sbjct: 7 GITRLEDALLAEALGAFALGFVLAPGSRRRIAPEAARAIGEALGPFVVRVGVFRDQPPEE 66
Query: 150 PCSTCARYTRAYLHHIATVEPSACHLLSVHNIAFQMRLMREIRESIKEQRFPQYVKQYMK 209
P + + + + + + + +
Sbjct: 67 VLRLMEEARLQVAQLHGEEPPEWAEAV---GRFYPVIKAFPLEGPARPEWADYPAQALLL 123
Query: 210 DAYPDENYPRWTIDALRAVN 229
D + + + +
Sbjct: 124 DGKRPGSGEAYPRAWAKPLL 143
>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus
influenzae [TaxId: 727]}
Length = 293
Score = 31.2 bits (69), Expect = 0.13
Identities = 25/164 (15%), Positives = 42/164 (25%), Gaps = 15/164 (9%)
Query: 35 GGLD-EALRKDCAHQMVEKDVNGFAVGGLSGGEA-----KEDFWYSVLVSINCLPKDKPR 88
G ++ + LR+ H + + V+G VGG S GE +E + +
Sbjct: 19 GTINEKGLRQIIRHNIDKMKVDGLYVGG-STGENFMLSTEEKKEIFRIAKDEAKDQIALI 77
Query: 89 YVMGIGFAVDLLICC----ALGADMFDCVFPTRTARFGSALVRQGQLQLKRDEYATDFTP 144
+G + + LG D V P + T
Sbjct: 78 AQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYD----TIIAETGSNM 133
Query: 145 IDNQCPCSTCARYTRAYLHHIATVEPSACHLLSVHNIAFQMRLM 188
I P T + + + RL
Sbjct: 134 IVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTAGDFYLLERLK 177
>d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima
[TaxId: 2336]}
Length = 252
Score = 27.1 bits (59), Expect = 2.5
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 13 WLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLSGGEAKEDF 71
++ + L+ + T I+ GG + +V+KD++G VGG S KE F
Sbjct: 189 FIRKLLSEMYDEETAGSIRILYGG--SIKPDNFLGLIVQKDIDGGLVGGAS---LKESF 242
>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 25.0 bits (54), Expect = 3.5
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 133 LKRDEYATDFTPIDNQCPCSTCARYTRAYLHHIATVEPSACHLLSVHNIAFQMRLMREIR 192
LKRD + Q C ++ + L A + HL HN FQ R R+ R
Sbjct: 1 LKRD-FIILGNGPRLQNSTYQC-KHCDSKLQSTAEL---TSHLNI-HNEEFQKRAKRQER 54
Query: 193 ES--IKEQRF 200
+ +Q++
Sbjct: 55 RKQLLSKQKY 64
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 366
Score = 26.8 bits (58), Expect = 3.7
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 266 YVIGVDVLKKAGGLHKFMGWKRALLTDSG-----GFQMVSLLKFAEITEEGVKFQ 315
YV G +V+ K + +G K ++ D G +V+ LK I E V F
Sbjct: 12 YVQGKNVITKIANYLEGIGNKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFS 66
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus
anthracis [TaxId: 1392]}
Length = 292
Score = 26.4 bits (57), Expect = 4.6
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 12/92 (13%)
Query: 34 QGGLD-EALRKDCAHQMVEKDVNGFAVGGLSGGEA----KEDFWYSVLVSINCLPKDKPR 88
G +D K + ++ VGG + GE+ E+ ++ + K P
Sbjct: 18 NGNIDFAKTTKLVNYL-IDNGTTAIVVGG-TTGESPTLTSEEKVALYRHVVSVVDKRVPV 75
Query: 89 YVMGIGFAVDLLICCA-----LGADMFDCVFP 115
I +G D V P
Sbjct: 76 IAGTGSNNTHASIDLTKKATEVGVDAVMLVAP 107
>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba
histolytica [TaxId: 5759]}
Length = 260
Score = 26.0 bits (56), Expect = 6.6
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 12 RWLDRCLAAHRNPTTQNIFPIVQGGLDEALRKDCAHQMVEKDVNGFAVGGLS 63
+++ + + + + I GG +C + D++GF VGG S
Sbjct: 194 QYIRKWMTENISKEVAEATRIQYGG--SVNPANCNELAKKADIDGFLVGGAS 243
>d1a0tp_ f.4.3.2 (P:) Sucrose-specific porin {Enterobacterium
(Salmonella typhimurium) [TaxId: 90371]}
Length = 413
Score = 26.1 bits (57), Expect = 7.0
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 200 FPQYVKQYMKDAYPDENYPRWTIDALRAV 228
P + Q KD Y D + +W LR +
Sbjct: 284 APAMLAQRSKDRYADGDSYQWATFNLRLI 312
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
central and FMN domains {Azospirillum brasilense [TaxId:
192]}
Length = 771
Score = 26.0 bits (57), Expect = 7.4
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 92 GIGFAVDLLICCALGADMF 110
G+ D++I LGA+ F
Sbjct: 650 GLKTGRDIVIAAMLGAEEF 668
>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima
[TaxId: 2336]}
Length = 364
Score = 25.7 bits (55), Expect = 8.8
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 266 YVIGVDVLKKAGGLHKFMGWKRALLTDSG 294
YV G + G + ++ D
Sbjct: 12 YVQGAGAINILEEELSRFGERAFVVIDDF 40
>d1hvca_ b.50.1.1 (A:) Human immunodeficiency virus type 1 protease
{Human immunodeficiency virus type 1 [TaxId: 11676]}
Length = 203
Score = 25.3 bits (56), Expect = 8.9
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 64 GGEAKEDFWY-----SVLVSINCLPKDKPRYVMGIG 94
GG+ KE +VL ++ + KP+ + GIG
Sbjct: 120 GGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIG 155
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.430
Gapped
Lambda K H
0.267 0.0584 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,205,889
Number of extensions: 55061
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 19
Length of query: 319
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,240,546
Effective search space: 290287764
Effective search space used: 290287764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.5 bits)