BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14118
(766 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 286 bits (732), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 174/479 (36%), Positives = 259/479 (54%), Gaps = 78/479 (16%)
Query: 289 EGEWVRGVTAGGSQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEICNLSPDS 348
E EW +G + S EW + +E+ +L + +D GEFWMS++DF++ F++LEICNL+PD+
Sbjct: 290 EVEW-KGPWSDNSYEWNKVDPYEREQLRVKMED-GEFWMSFRDFIREFTKLEICNLTPDA 347
Query: 349 LIEDAMSRDRGKKWEMSVYEGEWVRGVTAGGCRNYLETFWCNPQFKITLTEVDENDE--- 405
L + + W + YEG W RG TAGGCRNY TFW NPQFKI L EVD+ D+
Sbjct: 348 LKSRTL-----RNWNTTFYEGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDADDYDS 402
Query: 406 -DGKCTVIIGLMQKNRRAQKKTGAECLTIGFAVYQI-EDPDNVPTPLDLNFFKYNASCAR 463
+ C+ ++ LMQK+RR +++ G + TIGFAVYQ+ + P L +FF NAS A+
Sbjct: 403 RESGCSFLLALMQKHRRRERRFGRDMETIGFAVYQVPRELAGQPVHLKRDFFLANASRAQ 462
Query: 464 APSFINLREVSCRFKLPPGVYCIVPSTFEPNEEGEFILRVFSEHKNNMEENDEEVGMGEI 523
+ FINLREVS R +LPPG Y +VPSTFEPN+EG+F+LR FSE K G E+
Sbjct: 463 SEHFINLREVSNRIRLPPGEYIVVPSTFEPNKEGDFLLRFFSEKK---------AGTQEL 513
Query: 524 DNRIQ--IPDEPQPEKEKKTEAIRQFFQKLAGDDMEVDWMELKDILDYAMRNETKTTTEG 581
D++IQ +PDE +E+ + + F KLAGDDME+ EL+ IL+ + ++ K
Sbjct: 514 DDQIQANLPDEKVLSEEEIDDNFKTLFSKLAGDDMEISVKELQTILNRII-SKHKDLRTN 572
Query: 582 GFSKDVCRNVPANTSTTDSPATGIVGNLLALICGNACRDTPLGAALETKTTTEGGFSKDV 641
GFS + CR++ + D G +G + I N R
Sbjct: 573 GFSLESCRSM---VNLMDRDGNGKLGLVEFNILWNRIR---------------------- 607
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGY 701
N+ ++F+ +D + SG +S +E+R A+ +AG+
Sbjct: 608 -----------------------------NYLTIFRKFDLDKSGSMSAYEMRMAIEAAGF 638
Query: 702 HLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKARDPSSTNKATFTLEEWV 760
L + ++ R++ + I FD+F+ C VRL+ + +FK DP +T L W+
Sbjct: 639 KLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEILFKIFKQLDPENTGTIQLDLISWL 697
Score = 266 bits (679), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 136/250 (54%), Positives = 174/250 (69%), Gaps = 12/250 (4%)
Query: 56 FEWMRPMYGRWVDVVIDDRLPTYYGKLVFLHSSTDNEFWSALLEKAYAKLHGSYEALKGG 115
F + +G WVDVV+DD LPT GKLVF+HS+ NEFWSALLEKAYAK++GSYEAL GG
Sbjct: 139 FHFQLWQFGEWVDVVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGG 198
Query: 116 STCEAMEDFTGGVSEMYELNEAPSNLWQILLKAHERSSLMGCSIE-PDPSVLEMQTPQGL 174
T EA EDFTGGV+E Y+L +APS+L+QI+LKA ER SL+GCSI D LE T + L
Sbjct: 199 CTSEAFEDFTGGVTEWYDLQKAPSDLYQIILKALERGSLLGCSINISDIRDLEAITFKNL 258
Query: 175 VKGHAYSITRIKYVDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEWRFIPDHEKR 234
V+GHAYS+T K V ++ LIRMRNPWG E EW G WSD S EW + +E+
Sbjct: 259 VRGHAYSVTDAKQVTYQ----GQRVNLIRMRNPWG-EVEWKGPWSDNSYEWNKVDPYERE 313
Query: 235 ELGLTFDDDGEFWMSYKDFLKYFSRLEICNLSPDSLIEDAMSRDRGKKWEMSVYEGEWVR 294
+L + +DGEFWMS++DF++ F++LEICNL+PD+L + + W + YEG W R
Sbjct: 314 QLRVKM-EDGEFWMSFRDFIREFTKLEICNLTPDALKSRTL-----RNWNTTFYEGTWRR 367
Query: 295 GVTAGGSQEW 304
G TAGG + +
Sbjct: 368 GSTAGGCRNY 377
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 85/131 (64%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQA 695
GF D CRSMVA++D D +GKLGFEEF+ LW +I+ W+ ++K ++ + SG + EL A
Sbjct: 770 GFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQGIYKRFETDRSGTIGSNELPGA 829
Query: 696 LTSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKARDPSSTNKATFT 755
+AG+HLN HI +++ RYS + FD+F+ C VRL M F++ D + T +
Sbjct: 830 FEAAGFHLNQHIYSMIIRRYSDETGNMDFDNFISCLVRLDAMFRAFRSLDKNGTGQIQVN 889
Query: 756 LEEWVENTLYS 766
++EW++ T+YS
Sbjct: 890 IQEWLQLTMYS 900
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 18 QDFAAIRDRCLSQGTLFEDPDFPCDDSSIFYSKMPPKS-----FEWMRP 61
QD+ +R+ CL G LF+DP FP S+ + ++ P S +W RP
Sbjct: 30 QDYETLRNECLEAGALFQDPAFPPVSHSLGFKELGPNSSKTYGIKWKRP 78
>pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Form Ii
Length = 699
Score = 270 bits (691), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 161/456 (35%), Positives = 245/456 (53%), Gaps = 72/456 (15%)
Query: 309 DHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEICNLSPDSLIEDAMSRDRGKKWEMSVYE 368
D E+RE +DGEFWMS+ DFL+++SRLEICNL+PD+L D KKW+++ +
Sbjct: 307 DPEERERLTRRHEDGEFWMSFSDFLRHYSRLEICNLTPDTLTSDTY-----KKWKLTKMD 361
Query: 369 GEWVRGVTAGGCRNYLETFWCNPQFKITLTEVDENDED--GKCTVIIGLMQKNRRAQKKT 426
G W RG TAGGCRNY TFW NPQ+ I L E DE++ED CT ++GL+QK+RR Q+K
Sbjct: 362 GNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDEDEEDGESGCTFLVGLIQKHRRRQRKM 421
Query: 427 GAECLTIGFAVYQIEDPDNVPTPLDL--NFFKYNASCARAPSFINLREVSCRFKLPPGVY 484
G + TIGF +Y++ + + T + L NFF N + R+ +FINLREV RFKLPPG Y
Sbjct: 422 GEDMHTIGFGIYEVPEELSGQTNIHLSKNFFLTNRARERSDTFINLREVLNRFKLPPGEY 481
Query: 485 CIVPSTFEPNEEGEFILRVFSEHKNNMEENDEEVGMGEIDNRIQIPDEPQPEKEKKTEAI 544
+VPSTFEPN++G+F +RVFSE K + + D+E+ +E ++ + +
Sbjct: 482 ILVPSTFEPNKDGDFCIRVFSEKKADYQAVDDEIEAN--------LEEFDISEDDIDDGV 533
Query: 545 RQFFQKLAGDDMEVDWMELKDILDYAMRNETKTTTEGGFSKDVCRNVPANTSTTDSPATG 604
R+ F +LAG+D E+ EL+ IL + ++ GFS + C+ + DS +G
Sbjct: 534 RRLFAQLAGEDAEISAFELQTILRRVLAKRQDIKSD-GFSIETCKIM---VDMLDSDGSG 589
Query: 605 IVGNLLALICGNACRDTPLGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQ 664
+G +EF
Sbjct: 590 KLG---------------------------------------------------LKEFYI 598
Query: 665 LWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISF 724
LW I+ ++ +++ D + SG ++ +E+R+AL AG+ + + ++ R++ I F
Sbjct: 599 LWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKMPCQLHQVIVARFADDQLIIDF 658
Query: 725 DDFMMCAVRLKTMIDLFKARDPSSTNKATFTLEEWV 760
D+F+ C VRL+T+ +FK DP +T L W+
Sbjct: 659 DNFVRCLVRLETLFKIFKQLDPENTGTIELDLISWL 694
Score = 246 bits (628), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 128/244 (52%), Positives = 171/244 (70%), Gaps = 14/244 (5%)
Query: 63 YGRWVDVVIDDRLPTYYGKLVFLHSSTDNEFWSALLEKAYAKLHGSYEALKGGSTCEAME 122
YG WV+VV+DDRLPT G+L+F+HS+ +EFWSALLEKAYAK++G YEAL GG+T E E
Sbjct: 145 YGEWVEVVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFE 204
Query: 123 DFTGGVSEMYELNEAPSNLWQILLKAHERSSLMGCSIEPDPSV-LEMQTPQGLVKGHAYS 181
DFTGG++E YEL + P NL++I+ KA ++ SL+GCSI+ + E T Q LVKGHAYS
Sbjct: 205 DFTGGIAEWYELKKPPPNLFKIIQKALQKGSLLGCSIDITSAADSEAITFQKLVKGHAYS 264
Query: 182 ITRIKYVDISTPNTSGKI-PLIRMRNPWGNEAEWNGAWSDKSQEWRFIPDHEKRELGLTF 240
+T + V+ ++G + LIR+RNPWG E EW G W+D W I D E+RE
Sbjct: 265 VTGAEEVE-----SNGSLQKLIRIRNPWG-EVEWTGRWNDNCPSWNTI-DPEERERLTRR 317
Query: 241 DDDGEFWMSYKDFLKYFSRLEICNLSPDSLIEDAMSRDRGKKWEMSVYEGEWVRGVTAGG 300
+DGEFWMS+ DFL+++SRLEICNL+PD+L D KKW+++ +G W RG TAGG
Sbjct: 318 HEDGEFWMSFSDFLRHYSRLEICNLTPDTLTSDTY-----KKWKLTKMDGNWRRGSTAGG 372
Query: 301 SQEW 304
+ +
Sbjct: 373 CRNY 376
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 18 QDFAAIRDRCLSQGTLFEDPDFPCDDSSIFYSKMPPKS-----FEWMRP 61
QD+ A+R+ CL GTLF+DP FP S++ + ++ P S W RP
Sbjct: 29 QDYEALRNECLEAGTLFQDPSFPAIPSALGFKELGPYSSKTRGMRWKRP 77
>pdb|1ZIV|A Chain A, Catalytic Domain Of Human Calpain-9
Length = 339
Score = 256 bits (655), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 139/270 (51%), Positives = 180/270 (66%), Gaps = 19/270 (7%)
Query: 11 RGRIGEVQDFAAIRDRCLSQGTLF----EDPDFPCDDSSIFYSKMPPKSFEWMRPMYGRW 66
+G +G+ AAI L+Q L +D F + IF+ + W + W
Sbjct: 83 QGELGDCWLLAAIASLTLNQKALARVIPQDQSFGPGYAGIFHFQF------WQ---HSEW 133
Query: 67 VDVVIDDRLPTYYGKLVFLHSSTDNEFWSALLEKAYAKLHGSYEALKGGSTCEAMEDFTG 126
+DVVIDDRLPT+ +LVFLHS+ NEFWSALLEKAYAKL+GSYEALKGGS EAMEDFTG
Sbjct: 134 LDVVIDDRLPTFRDRLVFLHSADHNEFWSALLEKAYAKLNGSYEALKGGSAIEAMEDFTG 193
Query: 127 GVSEMYELNEAPSNLWQILLKAHERSSLMGCSIEPDPSV-LEMQTPQGLVKGHAYSITRI 185
GV+E ++ EAP N ++IL KA +R SL+GC I+ + E +TP GL+KGHAYS+T I
Sbjct: 194 GVAETFQTKEAPENFYEILEKALKRGSLLGCFIDTRSAAESEARTPFGLIKGHAYSVTGI 253
Query: 186 KYVDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEWRFIPDHEKRELGLTFDDDGE 245
V +I LIR+RNPWG + EWNG+WSD S EWR + E++ L T DDGE
Sbjct: 254 DQVSFR----GQRIELIRIRNPWG-QVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGE 308
Query: 246 FWMSYKDFLKYFSRLEICNLSPDSLIEDAM 275
FWM++KDF +F ++EICNL+PD+L EDA+
Sbjct: 309 FWMAFKDFKAHFDKVEICNLTPDALEEDAI 338
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 279 RGKKWEMSVYEGEWVR----GVTAGGSQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLK 334
RG++ E+ W + G + S EWR + E++ L T DDGEFWM++KDF
Sbjct: 259 RGQRIELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAFKDFKA 318
Query: 335 YFSRLEICNLSPDSLIEDAM 354
+F ++EICNL+PD+L EDA+
Sbjct: 319 HFDKVEICNLTPDALEEDAI 338
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 7 GLRPRGRIGEVQDFAAIRDRCLSQGTLFEDPDFPCDDSSIFYSKMPPKSFEWMRP 61
GL PRG F +R CL +GTLFED DFP +SS+FYS+ P F W RP
Sbjct: 13 GLVPRG-----SSFEQMRQECLQRGTLFEDADFPASNSSLFYSERPQIPFVWKRP 62
>pdb|3DF0|A Chain A, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|A Chain A, Structure Of M-Calpain In Complex With Calpastatin
Length = 714
Score = 253 bits (646), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 156/444 (35%), Positives = 237/444 (53%), Gaps = 72/444 (16%)
Query: 321 DDGEFWMSYKDFLKYFSRLEICNLSPDSLIEDAMSRDRGKKWEMSVYEGEWVRGVTAGGC 380
+DGEFWMS+ DFL+++SRLEICNL+PD+L D+ KKW+++ +G W RG TAGGC
Sbjct: 320 EDGEFWMSFSDFLRHYSRLEICNLTPDTLTCDSY-----KKWKLTKMDGNWRRGSTAGGC 374
Query: 381 RNYLETFWCNPQFKITLTEVDENDEDGK--CTVIIGLMQKNRRAQKKTGAECLTIGFAVY 438
RNY TFW NPQ+ I L E DE+DEDG+ CT ++GL+QK+RR Q+K G + TIGF +Y
Sbjct: 375 RNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRKMGEDMHTIGFGIY 434
Query: 439 QIEDPDNVPTPLDL--NFFKYNASCARAPSFINLREVSCRFKLPPGVYCIVPSTFEPNEE 496
++ + T + L NFF + R+ +FINLREV RFKLPPG Y +VPSTFEP++
Sbjct: 435 EVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGEYVLVPSTFEPHKN 494
Query: 497 GEFILRVFSEHKNNMEENDEEVGMGEIDNRIQIPDEPQPEKEKKTEAIRQFFQKLAGDDM 556
G+F +RVFSE K + + D+ +E + +E + R+ F +LAG+D
Sbjct: 495 GDFCIRVFSEKKADYQTVDD--------EIEANIEEIEANEEDIGDGFRRLFAQLAGEDA 546
Query: 557 EVDWMELKDILDYAMRNETKTTTEGGFSKDVCRNVPANTSTTDSPATGIVGNLLALICGN 616
E+ EL+ IL + ++ GFS + C+ + D +G +G
Sbjct: 547 EISAFELQTILRRVLAKREDIKSD-GFSIETCKIM---VDMLDEDGSGKLG--------- 593
Query: 617 ACRDTPLGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVF 676
+EF LW I+ ++ ++
Sbjct: 594 ------------------------------------------LKEFYILWTKIQKYQKIY 611
Query: 677 KMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKT 736
+ D + SG ++ +E+R+AL AG+ L + ++ R++ + I FD+F+ C VRL+
Sbjct: 612 REIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEI 671
Query: 737 MIDLFKARDPSSTNKATFTLEEWV 760
+ +FK DP +T L W+
Sbjct: 672 LFKIFKQLDPENTGTIQLDLISWL 695
Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/300 (46%), Positives = 191/300 (63%), Gaps = 27/300 (9%)
Query: 11 RGRIGEVQDFAAIRDRCLSQGTLFE----DPDFPCDDSSIFYSKMPPKSFEWMRPMYGRW 66
+G +G+ AAI L++ L D F + + IF+ + W YG W
Sbjct: 99 QGALGDSWLLAAIASLTLNEEILARVVPLDQSFQENYAGIFHFQF------WQ---YGEW 149
Query: 67 VDVVIDDRLPTYYGKLVFLHSSTDNEFWSALLEKAYAKLHGSYEALKGGSTCEAMEDFTG 126
V+VV+DDRLPT G+L+F+HS+ +EFWSALLEKAYAK++G YEAL GG+T E EDFTG
Sbjct: 150 VEVVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTG 209
Query: 127 GVSEMYELNEAPSNLWQILLKAHERSSLMGCSIEPDPSV-LEMQTPQGLVKGHAYSITRI 185
G++E YEL + P NL++I+ KA E+ SL+GCSI+ + E T Q LVKGHAYS+T
Sbjct: 210 GIAEWYELRKPPPNLFKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGA 269
Query: 186 KYVDISTPNTSGKI-PLIRMRNPWGNEAEWNGAWSDKSQEWRFIPDHEKRELGLTFDDDG 244
+ V+ +SG + LIR+RNPWG + EW G W+D W + D E R +DG
Sbjct: 270 EEVE-----SSGSLQKLIRIRNPWG-QVEWTGKWNDNCPSWNTV-DPEVRANLTERQEDG 322
Query: 245 EFWMSYKDFLKYFSRLEICNLSPDSLIEDAMSRDRGKKWEMSVYEGEWVRGVTAGGSQEW 304
EFWMS+ DFL+++SRLEICNL+PD+L D+ KKW+++ +G W RG TAGG + +
Sbjct: 323 EFWMSFSDFLRHYSRLEICNLTPDTLTCDSY-----KKWKLTKMDGNWRRGSTAGGCRNY 377
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 18 QDFAAIRDRCLSQGTLFEDPDFPCDDSSIFYSKMPPKS-----FEWMRP 61
QD+ +R+ CL G LF+DP FP SS+ + ++ P S EW RP
Sbjct: 30 QDYETLRNECLEAGALFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRP 78
>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain
Length = 700
Score = 253 bits (645), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 156/444 (35%), Positives = 238/444 (53%), Gaps = 72/444 (16%)
Query: 321 DDGEFWMSYKDFLKYFSRLEICNLSPDSLIEDAMSRDRGKKWEMSVYEGEWVRGVTAGGC 380
+DGEFWMS+ DFL+++SRLEICNL+PD+L D+ KKW+++ +G W RG TAGGC
Sbjct: 320 EDGEFWMSFSDFLRHYSRLEICNLTPDTLTCDSY-----KKWKLTKMDGNWRRGSTAGGC 374
Query: 381 RNYLETFWCNPQFKITLTEVDENDEDGK--CTVIIGLMQKNRRAQKKTGAECLTIGFAVY 438
RNY TFW NPQ+ I L E DE+DEDG+ CT ++GL+QK+RR Q+K G + TIGF +Y
Sbjct: 375 RNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRKMGEDMHTIGFGIY 434
Query: 439 QIEDPDNVPTPLDL--NFFKYNASCARAPSFINLREVSCRFKLPPGVYCIVPSTFEPNEE 496
++ + T + L NFF + R+ +FINLREV RFKLPPG Y +VPSTFEP++
Sbjct: 435 EVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGEYVLVPSTFEPHKN 494
Query: 497 GEFILRVFSEHKNNMEENDEEVGMGEIDNRIQIPDEPQPEKEKKTEAIRQFFQKLAGDDM 556
G+F +RVFSE K + + D+E+ + + +E + R+ F +LAG+D
Sbjct: 495 GDFCIRVFSEKKADYQTVDDEIEANIEEI--------EANEEDIGDGFRRLFAQLAGEDA 546
Query: 557 EVDWMELKDILDYAMRNETKTTTEGGFSKDVCRNVPANTSTTDSPATGIVGNLLALICGN 616
E+ EL+ IL + ++ GFS + C+ + D +G +G
Sbjct: 547 EISAFELQTILRRVLAKREDIKSD-GFSIETCKIM---VDMLDEDGSGKLG--------- 593
Query: 617 ACRDTPLGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVF 676
+EF LW I+ ++ ++
Sbjct: 594 ------------------------------------------LKEFYILWTKIQKYQKIY 611
Query: 677 KMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKT 736
+ D + SG ++ +E+R+AL AG+ L + ++ R++ + I FD+F+ C VRL+
Sbjct: 612 REIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEI 671
Query: 737 MIDLFKARDPSSTNKATFTLEEWV 760
+ +FK DP +T L W+
Sbjct: 672 LFKIFKQLDPENTGTIQLDLISWL 695
Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/300 (46%), Positives = 191/300 (63%), Gaps = 27/300 (9%)
Query: 11 RGRIGEVQDFAAIRDRCLSQGTLFE----DPDFPCDDSSIFYSKMPPKSFEWMRPMYGRW 66
+G +G+ AAI L++ L D F + + IF+ + W YG W
Sbjct: 99 QGALGDSWLLAAIASLTLNEEILARVVPLDQSFQENYAGIFHFQF------WQ---YGEW 149
Query: 67 VDVVIDDRLPTYYGKLVFLHSSTDNEFWSALLEKAYAKLHGSYEALKGGSTCEAMEDFTG 126
V+VV+DDRLPT G+L+F+HS+ +EFWSALLEKAYAK++G YEAL GG+T E EDFTG
Sbjct: 150 VEVVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTG 209
Query: 127 GVSEMYELNEAPSNLWQILLKAHERSSLMGCSIEPDPSV-LEMQTPQGLVKGHAYSITRI 185
G++E YEL + P NL++I+ KA E+ SL+GCSI+ + E T Q LVKGHAYS+T
Sbjct: 210 GIAEWYELRKPPPNLFKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGA 269
Query: 186 KYVDISTPNTSGKI-PLIRMRNPWGNEAEWNGAWSDKSQEWRFIPDHEKRELGLTFDDDG 244
+ V+ +SG + LIR+RNPWG + EW G W+D W + D E R +DG
Sbjct: 270 EEVE-----SSGSLQKLIRIRNPWG-QVEWTGKWNDNCPSWNTV-DPEVRANLTERQEDG 322
Query: 245 EFWMSYKDFLKYFSRLEICNLSPDSLIEDAMSRDRGKKWEMSVYEGEWVRGVTAGGSQEW 304
EFWMS+ DFL+++SRLEICNL+PD+L D+ KKW+++ +G W RG TAGG + +
Sbjct: 323 EFWMSFSDFLRHYSRLEICNLTPDTLTCDSY-----KKWKLTKMDGNWRRGSTAGGCRNY 377
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 18 QDFAAIRDRCLSQGTLFEDPDFPCDDSSIFYSKMPPKS-----FEWMRP 61
QD+ +R+ CL G LF+DP FP SS+ + ++ P S EW RP
Sbjct: 30 QDYETLRNECLEAGALFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRP 78
>pdb|1U5I|A Chain A, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
Length = 700
Score = 253 bits (645), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 156/444 (35%), Positives = 238/444 (53%), Gaps = 72/444 (16%)
Query: 321 DDGEFWMSYKDFLKYFSRLEICNLSPDSLIEDAMSRDRGKKWEMSVYEGEWVRGVTAGGC 380
+DGEFWMS+ DFL+++SRLEICNL+PD+L D+ KKW+++ +G W RG TAGGC
Sbjct: 320 EDGEFWMSFSDFLRHYSRLEICNLTPDTLTCDSY-----KKWKLTKMDGNWRRGSTAGGC 374
Query: 381 RNYLETFWCNPQFKITLTEVDENDEDGK--CTVIIGLMQKNRRAQKKTGAECLTIGFAVY 438
RNY TFW NPQ+ I L E DE+DEDG+ CT ++GL+QK+RR Q+K G + TIGF +Y
Sbjct: 375 RNYPNTFWMNPQYLIKLEEEDEDDEDGERGCTFLVGLIQKHRRRQRKMGEDMHTIGFGIY 434
Query: 439 QIEDPDNVPTPLDL--NFFKYNASCARAPSFINLREVSCRFKLPPGVYCIVPSTFEPNEE 496
++ + T + L NFF + R+ +FINLREV RFKLPPG Y +VPSTFEP++
Sbjct: 435 EVPEELTGQTNIHLSKNFFLTTRARERSDTFINLREVLNRFKLPPGEYVLVPSTFEPHKN 494
Query: 497 GEFILRVFSEHKNNMEENDEEVGMGEIDNRIQIPDEPQPEKEKKTEAIRQFFQKLAGDDM 556
G+F +RVFSE K + + D+E+ + + +E + R+ F +LAG+D
Sbjct: 495 GDFCIRVFSEKKADYQTVDDEIEANIEEI--------EANEEDIGDGFRRLFAQLAGEDA 546
Query: 557 EVDWMELKDILDYAMRNETKTTTEGGFSKDVCRNVPANTSTTDSPATGIVGNLLALICGN 616
E+ EL+ IL + ++ GFS + C+ + D +G +G
Sbjct: 547 EISAFELQTILRRVLAKREDIKSD-GFSIETCKIM---VDMLDEDGSGKLG--------- 593
Query: 617 ACRDTPLGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVF 676
+EF LW I+ ++ ++
Sbjct: 594 ------------------------------------------LKEFYILWTKIQKYQKIY 611
Query: 677 KMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKT 736
+ D + SG ++ +E+R+AL AG+ L + ++ R++ + I FD+F+ C VRL+
Sbjct: 612 REIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEI 671
Query: 737 MIDLFKARDPSSTNKATFTLEEWV 760
+ +FK DP +T L W+
Sbjct: 672 LFKIFKQLDPENTGTIQLDLISWL 695
Score = 244 bits (622), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 139/300 (46%), Positives = 191/300 (63%), Gaps = 27/300 (9%)
Query: 11 RGRIGEVQDFAAIRDRCLSQGTLFE----DPDFPCDDSSIFYSKMPPKSFEWMRPMYGRW 66
+G +G+ AAI L++ L D F + + IF+ + W YG W
Sbjct: 99 QGALGDSWLLAAIASLTLNEEILARVVPLDQSFQENYAGIFHFQF------WQ---YGEW 149
Query: 67 VDVVIDDRLPTYYGKLVFLHSSTDNEFWSALLEKAYAKLHGSYEALKGGSTCEAMEDFTG 126
V+VV+DDRLPT G+L+F+HS+ +EFWSALLEKAYAK++G YEAL GG+T E EDFTG
Sbjct: 150 VEVVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTG 209
Query: 127 GVSEMYELNEAPSNLWQILLKAHERSSLMGCSIEPDPSV-LEMQTPQGLVKGHAYSITRI 185
G++E YEL + P NL++I+ KA E+ SL+GCSI+ + E T Q LVKGHAYS+T
Sbjct: 210 GIAEWYELRKPPPNLFKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGA 269
Query: 186 KYVDISTPNTSGKI-PLIRMRNPWGNEAEWNGAWSDKSQEWRFIPDHEKRELGLTFDDDG 244
+ V+ +SG + LIR+RNPWG + EW G W+D W + D E R +DG
Sbjct: 270 EEVE-----SSGSLQKLIRIRNPWG-QVEWTGKWNDNCPSWNTV-DPEVRANLTERQEDG 322
Query: 245 EFWMSYKDFLKYFSRLEICNLSPDSLIEDAMSRDRGKKWEMSVYEGEWVRGVTAGGSQEW 304
EFWMS+ DFL+++SRLEICNL+PD+L D+ KKW+++ +G W RG TAGG + +
Sbjct: 323 EFWMSFSDFLRHYSRLEICNLTPDTLTCDSY-----KKWKLTKMDGNWRRGSTAGGCRNY 377
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 18 QDFAAIRDRCLSQGTLFEDPDFPCDDSSIFYSKMPPKS-----FEWMRP 61
QD+ +R+ CL G LF+DP FP SS+ + ++ P S EW RP
Sbjct: 30 QDYETLRNECLEAGALFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRP 78
>pdb|2P0R|A Chain A, Structure Of Human Calpain 9 In Complex With Leupeptin
pdb|2P0R|B Chain B, Structure Of Human Calpain 9 In Complex With Leupeptin
Length = 333
Score = 250 bits (638), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 135/264 (51%), Positives = 175/264 (66%), Gaps = 19/264 (7%)
Query: 11 RGRIGEVQDFAAIRDRCLSQGTLF----EDPDFPCDDSSIFYSKMPPKSFEWMRPMYGRW 66
+G +G+ AAI L+Q L +D F + IF+ + W + W
Sbjct: 84 QGELGDCWLLAAIASLTLNQKALARVIPQDQSFGPGYAGIFHFQF------WQ---HSEW 134
Query: 67 VDVVIDDRLPTYYGKLVFLHSSTDNEFWSALLEKAYAKLHGSYEALKGGSTCEAMEDFTG 126
+DVVIDDRLPT+ +LVFLHS+ NEFWSALLEKAYAKL+GSYEALKGGS EAMEDFTG
Sbjct: 135 LDVVIDDRLPTFRDRLVFLHSADHNEFWSALLEKAYAKLNGSYEALKGGSAIEAMEDFTG 194
Query: 127 GVSEMYELNEAPSNLWQILLKAHERSSLMGCSIEPDPSV-LEMQTPQGLVKGHAYSITRI 185
GV+E ++ EAP N ++IL KA +R SL+GC I+ + E +TP GL+KGHAYS+T I
Sbjct: 195 GVAETFQTKEAPENFYEILEKALKRGSLLGCFIDTRSAAESEARTPFGLIKGHAYSVTGI 254
Query: 186 KYVDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEWRFIPDHEKRELGLTFDDDGE 245
V +I LIR+RNPWG + EWNG+WSD S EWR + E++ L T DDGE
Sbjct: 255 DQVSFR----GQRIELIRIRNPWG-QVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGE 309
Query: 246 FWMSYKDFLKYFSRLEICNLSPDS 269
FWM++KDF +F ++EICNL+PD+
Sbjct: 310 FWMAFKDFKAHFDKVEICNLTPDA 333
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 279 RGKKWEMSVYEGEWVR----GVTAGGSQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLK 334
RG++ E+ W + G + S EWR + E++ L T DDGEFWM++KDF
Sbjct: 260 RGQRIELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAFKDFKA 319
Query: 335 YFSRLEICNLSPDS 348
+F ++EICNL+PD+
Sbjct: 320 HFDKVEICNLTPDA 333
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 18 QDFAAIRDRCLSQGTLFEDPDFPCDDSSIFYSKMPPKSFEWMRP 61
Q F +R CL +GTLFED DFP +SS+FYS+ P F W RP
Sbjct: 20 QSFEQMRQECLQRGTLFEDADFPASNSSLFYSERPQIPFVWKRP 63
>pdb|2ARY|A Chain A, Catalytic Domain Of Human Calpain-1
pdb|2ARY|B Chain B, Catalytic Domain Of Human Calpain-1
Length = 351
Score = 249 bits (635), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 131/218 (60%), Positives = 164/218 (75%), Gaps = 11/218 (5%)
Query: 56 FEWMRPMYGRWVDVVIDDRLPTYYGKLVFLHSSTDNEFWSALLEKAYAKLHGSYEALKGG 115
F + +G WVDVV+DD LP GKLVF+HS+ NEFWSALLEKAYAK++GSYEAL GG
Sbjct: 140 FHFQLWQFGEWVDVVVDDLLPIKDGKLVFVHSAEGNEFWSALLEKAYAKVNGSYEALSGG 199
Query: 116 STCEAMEDFTGGVSEMYELNEAPSNLWQILLKAHERSSLMGCSIEPDPSVLEMQ--TPQG 173
ST E EDFTGGV+E YEL +APS+L+QI+LKA ER SL+GCSI+ SVL+M+ T +
Sbjct: 200 STSEGFEDFTGGVTEWYELRKAPSDLYQIILKALERGSLLGCSIDIS-SVLDMEAITFKK 258
Query: 174 LVKGHAYSITRIKYVDISTPNTSGK-IPLIRMRNPWGNEAEWNGAWSDKSQEWRFIPDHE 232
LVKGHAYS+T K V N G+ + LIRMRNPWG E EW GAWSD S EW + +E
Sbjct: 259 LVKGHAYSVTGAKQV-----NYRGQVVSLIRMRNPWG-EVEWTGAWSDSSSEWNNVDPYE 312
Query: 233 KRELGLTFDDDGEFWMSYKDFLKYFSRLEICNLSPDSL 270
+ +L + +DGEFWMS++DF++ F+RLEICNL+PD+L
Sbjct: 313 RDQLRVKM-EDGEFWMSFRDFMREFTRLEICNLTPDAL 349
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 289 EGEWVRGVTAGGSQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEICNLSPDS 348
E EW G + S EW + +E+ +L + +D GEFWMS++DF++ F+RLEICNL+PD+
Sbjct: 291 EVEWT-GAWSDSSSEWNNVDPYERDQLRVKMED-GEFWMSFRDFMREFTRLEICNLTPDA 348
Query: 349 L 349
L
Sbjct: 349 L 349
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 16/69 (23%)
Query: 7 GLRPRGR---------IGEVQDFAAIRDRCLSQGTLFEDPDFPCDDSSIFYSKMPPKS-- 55
GL PRG +G QD+ +R RCL GTLF D FP S+ Y + P S
Sbjct: 13 GLVPRGSGRHENAIKYLG--QDYEQLRVRCLQSGTLFRDEAFPPVPQSLGYKDLGPNSSK 70
Query: 56 ---FEWMRP 61
+W RP
Sbjct: 71 TYGIKWKRP 79
>pdb|1ZCM|A Chain A, Human Calpain Protease Core Inhibited By Zllych2f
Length = 321
Score = 243 bits (619), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 129/213 (60%), Positives = 160/213 (75%), Gaps = 11/213 (5%)
Query: 56 FEWMRPMYGRWVDVVIDDRLPTYYGKLVFLHSSTDNEFWSALLEKAYAKLHGSYEALKGG 115
F + +G WVDVV+DD LP GKLVF+HS+ NEFWSALLEKAYAK++GSYEAL GG
Sbjct: 117 FHFQLWQFGEWVDVVVDDLLPIKDGKLVFVHSAEGNEFWSALLEKAYAKVNGSYEALSGG 176
Query: 116 STCEAMEDFTGGVSEMYELNEAPSNLWQILLKAHERSSLMGCSIEPDPSVLEMQ--TPQG 173
ST EA EDFTGGV+E YEL +APS+L+QI+LKA ER SL+GCSI+ SVL+M+ T +
Sbjct: 177 STSEAFEDFTGGVTEWYELRKAPSDLYQIILKALERGSLLGCSIDIS-SVLDMEAITFKK 235
Query: 174 LVKGHAYSITRIKYVDISTPNTSGK-IPLIRMRNPWGNEAEWNGAWSDKSQEWRFIPDHE 232
LVKGHAYS+T K V N G+ + LIRMRNPWG E EW GAWSD S EW + +E
Sbjct: 236 LVKGHAYSVTGAKQV-----NYRGQVVSLIRMRNPWG-EVEWTGAWSDSSSEWNNVDPYE 289
Query: 233 KRELGLTFDDDGEFWMSYKDFLKYFSRLEICNL 265
+ +L + +DGEFWMS++DF++ F+RLEICNL
Sbjct: 290 RDQLRVKM-EDGEFWMSFRDFMREFTRLEICNL 321
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 289 EGEWVRGVTAGGSQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEICNL 344
E EW G + S EW + +E+ +L + +D GEFWMS++DF++ F+RLEICNL
Sbjct: 268 EVEWT-GAWSDSSSEWNNVDPYERDQLRVKMED-GEFWMSFRDFMREFTRLEICNL 321
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 18 QDFAAIRDRCLSQGTLFEDPDFPCDDSSIFYSKMPPKS-----FEWMRP 61
QD+ +R RCL GTLF D FP S+ Y + P S +W RP
Sbjct: 8 QDYEQLRVRCLQSGTLFRDEAFPPVPQSLGYKDLGPNSSKTYGIKWKRP 56
>pdb|1KXR|A Chain A, Crystal Structure Of Calcium-Bound Protease Core Of
Calpain I
pdb|1KXR|B Chain B, Crystal Structure Of Calcium-Bound Protease Core Of
Calpain I
Length = 339
Score = 242 bits (617), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 124/214 (57%), Positives = 156/214 (72%), Gaps = 7/214 (3%)
Query: 56 FEWMRPMYGRWVDVVIDDRLPTYYGKLVFLHSSTDNEFWSALLEKAYAKLHGSYEALKGG 115
F + +G WVDVV+DD LPT GKLVF+HS+ NEFWSALLEKAYAK++GSYEAL GG
Sbjct: 124 FHFQLWQFGEWVDVVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGG 183
Query: 116 STCEAMEDFTGGVSEMYELNEAPSNLWQILLKAHERSSLMGCSIE-PDPSVLEMQTPQGL 174
T EA EDFTGGV+E Y+L +APS+L+QI+LKA ER SL+GCSI D LE T + L
Sbjct: 184 CTSEAFEDFTGGVTEWYDLQKAPSDLYQIILKALERGSLLGCSINISDIRDLEAITFKNL 243
Query: 175 VKGHAYSITRIKYVDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEWRFIPDHEKR 234
V+GHAYS+T K V ++ LIRMRNPWG E EW G WSD S EW + +E+
Sbjct: 244 VRGHAYSVTDAKQVTYQ----GQRVNLIRMRNPWG-EVEWKGPWSDNSYEWNKVDPYERE 298
Query: 235 ELGLTFDDDGEFWMSYKDFLKYFSRLEICNLSPD 268
+L + +DGEFWMS++DF++ F++LEICNL+PD
Sbjct: 299 QLRVKM-EDGEFWMSFRDFIREFTKLEICNLTPD 331
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 289 EGEWVRGVTAGGSQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEICNLSPD 347
E EW +G + S EW + +E+ +L + +D GEFWMS++DF++ F++LEICNL+PD
Sbjct: 275 EVEW-KGPWSDNSYEWNKVDPYEREQLRVKMED-GEFWMSFRDFIREFTKLEICNLTPD 331
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 18 QDFAAIRDRCLSQGTLFEDPDFPCDDSSIFYSKMPPKS-----FEWMRP 61
QD+ +R RCL G LF+D FP S+ + ++ P S +W RP
Sbjct: 15 QDYENLRARCLQNGVLFQDDAFPPVSHSLGFKELGPNSSKTYGIKWKRP 63
>pdb|1TL9|A Chain A, High Resolution Crystal Structure Of Calpain I Protease
Core In Complex With Leupeptin
pdb|1TLO|A Chain A, High Resolution Crystal Structure Of Calpain I Protease
Core In Complex With E64
pdb|2G8E|A Chain A, Calpain 1 Proteolytic Core In Complex With Snj-1715, A
Cyclic Hemiacetal-Type Inhibitor
pdb|2G8J|A Chain A, Calpain 1 Proteolytic Core In Complex With Snj-1945, A
Alpha-Ketoamide-Type Inhibitor.
pdb|2NQG|A Chain A, Calpain 1 Proteolytic Core Inactivated By Wr18(s,s), An
Epoxysuccinyl-type Inhibitor.
pdb|2NQI|A Chain A, Calpain 1 Proteolytic Core Inactivated By Wr13(R,R), An
Epoxysuccinyl-Type Inhibitor.
pdb|2R9C|A Chain A, Calpain 1 Proteolytic Core Inactivated By Zlak-3001, An
Alpha- Ketoamide
pdb|2R9F|A Chain A, Calpain 1 Proteolytic Core Inactivated By Zlak-3002, An
Alpha- Ketoamide
Length = 339
Score = 241 bits (616), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 124/214 (57%), Positives = 156/214 (72%), Gaps = 7/214 (3%)
Query: 56 FEWMRPMYGRWVDVVIDDRLPTYYGKLVFLHSSTDNEFWSALLEKAYAKLHGSYEALKGG 115
F + +G WVDVV+DD LPT GKLVF+HS+ NEFWSALLEKAYAK++GSYEAL GG
Sbjct: 124 FHFQLWQFGEWVDVVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGG 183
Query: 116 STCEAMEDFTGGVSEMYELNEAPSNLWQILLKAHERSSLMGCSIE-PDPSVLEMQTPQGL 174
T EA EDFTGGV+E Y+L +APS+L+QI+LKA ER SL+GCSI D LE T + L
Sbjct: 184 CTSEAFEDFTGGVTEWYDLQKAPSDLYQIILKALERGSLLGCSINISDIRDLEAITFKNL 243
Query: 175 VKGHAYSITRIKYVDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEWRFIPDHEKR 234
V+GHAYS+T K V ++ LIRMRNPWG E EW G WSD S EW + +E+
Sbjct: 244 VRGHAYSVTDAKQVTYQ----GQRVNLIRMRNPWG-EVEWKGPWSDNSYEWNKVDPYERE 298
Query: 235 ELGLTFDDDGEFWMSYKDFLKYFSRLEICNLSPD 268
+L + +DGEFWMS++DF++ F++LEICNL+PD
Sbjct: 299 QLRVKM-EDGEFWMSFRDFIREFTKLEICNLTPD 331
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 289 EGEWVRGVTAGGSQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEICNLSPD 347
E EW +G + S EW + +E+ +L + +D GEFWMS++DF++ F++LEICNL+PD
Sbjct: 275 EVEW-KGPWSDNSYEWNKVDPYEREQLRVKMED-GEFWMSFRDFIREFTKLEICNLTPD 331
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 18 QDFAAIRDRCLSQGTLFEDPDFPCDDSSIFYSKMPPKS-----FEWMRP 61
QD+ +R RCL G LF+D FP S+ + ++ P S +W RP
Sbjct: 15 QDYENLRARCLQNGVLFQDDAFPPVSHSLGFKELGPNSSKTYGIKWKRP 63
>pdb|2NQA|A Chain A, Catalytic Domain Of Human Calpain 8
pdb|2NQA|B Chain B, Catalytic Domain Of Human Calpain 8
Length = 326
Score = 238 bits (606), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 135/263 (51%), Positives = 168/263 (63%), Gaps = 20/263 (7%)
Query: 11 RGRIGEVQDFAAIRDRCLSQGTLFE----DPDFPCDDSSIFYSKMPPKSFEWMRPMYGRW 66
+G +G+ AAI L++ L+ D DF + + IF+ + W YG W
Sbjct: 79 QGGLGDCWLLAAIASLTLNEELLYRVVPRDQDFQENYAGIFHFQF------WQ---YGEW 129
Query: 67 VDVVIDDRLPTYYGKLVFLHSSTDNEFWSALLEKAYAKLHGSYEALKGGSTCEAMEDFTG 126
V+VVIDDRLPT G+L+FLHS NEFWSALLEKAYAKL+G YEAL GGST E EDFTG
Sbjct: 130 VEVVIDDRLPTKNGQLLFLHSEQGNEFWSALLEKAYAKLNGXYEALAGGSTVEGFEDFTG 189
Query: 127 GVSEMYELNEAPSNLWQILLKAHERSSLMGCSIEP-DPSVLEMQTPQGLVKGHAYSITRI 185
G+SE Y+L + P+NL+QI+ KA SL+GCSI+ + E T Q LVK HAYS+T +
Sbjct: 190 GISEFYDLKKPPANLYQIIRKALXAGSLLGCSIDVYSAAEAEAITSQKLVKSHAYSVTGV 249
Query: 186 KYVDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEWRFIPDHEKRELGLTFDDDGE 245
+ V+ LIR+RNPWG E EW+GAWSD + EW I K EL +DGE
Sbjct: 250 EEVNFQGHPEK----LIRLRNPWG-EVEWSGAWSDDAPEWNHIDPRRKEELDKKV-EDGE 303
Query: 246 FWMSYKDFLKYFSRLEICNLSPD 268
FWMS DF++ FSRLEICNLSPD
Sbjct: 304 FWMSLSDFVRQFSRLEICNLSPD 326
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 289 EGEWVRGVTAGGSQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEICNLSPD 347
E EW G + + EW I K EL +D GEFWMS DF++ FSRLEICNLSPD
Sbjct: 270 EVEW-SGAWSDDAPEWNHIDPRRKEELDKKVED-GEFWMSLSDFVRQFSRLEICNLSPD 326
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 18 QDFAAIRDRCLSQGTLFEDPDFPCDDSSIFYSKMPPKSFE-----WMRP 61
QDF +R +CL G LF+DP+FP S++ Y + P S + W RP
Sbjct: 10 QDFKTLRQQCLDSGVLFKDPEFPAXPSALGYKDLGPGSPQTQGIIWKRP 58
>pdb|1MDW|A Chain A, Crystal Structure Of Calcium-bound Protease Core Of
Calpain Ii Reveals The Basis For Intrinsic Inactivation
pdb|1MDW|B Chain B, Crystal Structure Of Calcium-bound Protease Core Of
Calpain Ii Reveals The Basis For Intrinsic Inactivation
Length = 328
Score = 221 bits (564), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 126/264 (47%), Positives = 170/264 (64%), Gaps = 22/264 (8%)
Query: 11 RGRIGEVQDFAAIRDRCLSQGTLFE----DPDFPCDDSSIFYSKMPPKSFEWMRPMYGRW 66
+G +G+ AAI L++ L D F + + IF+ + W YG W
Sbjct: 81 QGALGDSWLLAAIASLTLNEEILARVVPLDQSFQENYAGIFHFQF------WQ---YGEW 131
Query: 67 VDVVIDDRLPTYYGKLVFLHSSTDNEFWSALLEKAYAKLHGSYEALKGGSTCEAMEDFTG 126
V+VV+DDRLPT G+L+F+HS+ +EFWSALLEKAYAK++G YEAL GG+T E EDFTG
Sbjct: 132 VEVVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTG 191
Query: 127 GVSEMYELNEAPSNLWQILLKAHERSSLMGCSIEPDPSV-LEMQTPQGLVKGHAYSITRI 185
G++E YEL + P NL++I+ KA E+ SL+GCSI+ + E T Q LVKGHAYS+T
Sbjct: 192 GIAEWYELRKPPPNLFKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYSVTGA 251
Query: 186 KYVDISTPNTSGKI-PLIRMRNPWGNEAEWNGAWSDKSQEWRFIPDHEKRELGLTFDDDG 244
+ V+ +SG + LIR+RNPWG + EW G W+D W + D E R +DG
Sbjct: 252 EEVE-----SSGSLQKLIRIRNPWG-QVEWTGKWNDNCPSWNTV-DPEVRANLTERQEDG 304
Query: 245 EFWMSYKDFLKYFSRLEICNLSPD 268
EFWMS+ DFL+++SRLEICNL+PD
Sbjct: 305 EFWMSFSDFLRHYSRLEICNLTPD 328
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 26/27 (96%)
Query: 321 DDGEFWMSYKDFLKYFSRLEICNLSPD 347
+DGEFWMS+ DFL+++SRLEICNL+PD
Sbjct: 302 EDGEFWMSFSDFLRHYSRLEICNLTPD 328
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 18 QDFAAIRDRCLSQGTLFEDPDFPCDDSSIFYSKMPPKS-----FEWMRP 61
QD+ +R+ CL G LF+DP FP SS+ + ++ P S EW RP
Sbjct: 12 QDYETLRNECLEAGALFQDPSFPALPSSLGFKELGPYSSKTRGIEWKRP 60
>pdb|1KFX|S Chain S, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|S Chain S, Crystal Structure Of Human M-Calpain Form Ii
Length = 184
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 85/131 (64%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQA 695
GF D CRSMVA++D D +GKLGFEEF+ LW +I+ W++++K +D + SG + EL A
Sbjct: 54 GFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGA 113
Query: 696 LTSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKARDPSSTNKATFT 755
+AG+HLN H+ N++ RYS + FD+F+ C VRL M FK+ D T +
Sbjct: 114 FEAAGFHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVN 173
Query: 756 LEEWVENTLYS 766
++EW++ T+YS
Sbjct: 174 IQEWLQLTMYS 184
>pdb|1ALW|A Chain A, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALW|B Chain B, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|A Chain A, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|B Chain B, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1NX0|A Chain A, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX0|B Chain B, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX1|A Chain A, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX1|B Chain B, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX2|A Chain A, Calpain Domain Vi
pdb|1NX3|A Chain A, Calpain Domain Vi In Complex With The Inhibitor Pd150606
Length = 173
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 110/228 (48%), Gaps = 58/228 (25%)
Query: 542 EAIRQF---FQKLAGDDMEVDWMELKDILDYAMRNETKTTTEGGFSKDVCRNVPANTSTT 598
E +RQF F +LAGDDMEV EL +I +K V R+ T
Sbjct: 1 EEVRQFRRLFAQLAGDDMEVSATELMNI----------------LNKVVTRHPDLKTD-- 42
Query: 599 DSPATGIVGNLLALICGNACRDTPLGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLG 658
GF D CRSMVA++D D +GKLG
Sbjct: 43 -------------------------------------GFGIDTCRSMVAVMDSDTTGKLG 65
Query: 659 FEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGR 718
FEEF+ LW +I+ W++++K +D + SG + EL A +AG+HLN H+ +++ RYS
Sbjct: 66 FEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYSDE 125
Query: 719 DARISFDDFMMCAVRLKTMIDLFKARDPSSTNKATFTLEEWVENTLYS 766
+ FD+F+ C VRL M FK+ D T + ++EW++ T+YS
Sbjct: 126 GGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS 173
>pdb|1DF0|B Chain B, Crystal Structure Of M-Calpain
pdb|1U5I|B Chain B, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
pdb|3DF0|B Chain B, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|B Chain B, Structure Of M-Calpain In Complex With Calpastatin
Length = 184
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 85/131 (64%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQA 695
GF D CRSMVA++D D +GKLGFEEF+ LW +I+ W+ ++K +D + SG + EL A
Sbjct: 54 GFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGA 113
Query: 696 LTSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKARDPSSTNKATFT 755
+AG+HLN HI +++ RYS + FD+F+ C VRL M F++ D + T +
Sbjct: 114 FEAAGFHLNQHIYSMIIRRYSDETGNMDFDNFISCLVRLDAMFRAFRSLDKNGTGQIQVN 173
Query: 756 LEEWVENTLYS 766
++EW++ T+YS
Sbjct: 174 IQEWLQLTMYS 184
>pdb|1AJ5|A Chain A, Calpain Domain Vi Apo
pdb|1AJ5|B Chain B, Calpain Domain Vi Apo
Length = 173
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 85/131 (64%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQA 695
GF D CRSMVA++D D +GKLGFEEF+ LW +I+ W+ ++K +D + SG + EL A
Sbjct: 43 GFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGA 102
Query: 696 LTSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKARDPSSTNKATFT 755
+AG+HLN HI +++ RYS + FD+F+ C VRL M F++ D + T +
Sbjct: 103 FEAAGFHLNQHIYSMIIRRYSDETGNMDFDNFISCLVRLDAMFRAFRSLDKNGTGQIQVN 162
Query: 756 LEEWVENTLYS 766
++EW++ T+YS
Sbjct: 163 IQEWLQLTMYS 173
>pdb|1DVI|A Chain A, Calpain Domain Vi With Calcium Bound
pdb|1DVI|B Chain B, Calpain Domain Vi With Calcium Bound
Length = 184
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 84/131 (64%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQA 695
GF D RSMVA++D D +GKLGFEEF+ LW +I+ W+ ++K +D + SG + EL A
Sbjct: 54 GFGIDTSRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGA 113
Query: 696 LTSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKARDPSSTNKATFT 755
+AG+HLN HI +++ RYS + FD+F+ C VRL M F++ D + T +
Sbjct: 114 FEAAGFHLNQHIYSMIIRRYSDETGNMDFDNFISCLVRLDAMFRAFRSLDKNGTGQIQVN 173
Query: 756 LEEWVENTLYS 766
++EW++ T+YS
Sbjct: 174 IQEWLQLTMYS 184
>pdb|1NP8|A Chain A, 18-K C-Terminally Trunucated Small Subunit Of Calpain
pdb|1NP8|B Chain B, 18-K C-Terminally Trunucated Small Subunit Of Calpain
Length = 159
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 72/110 (65%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQA 695
GF D CRSMVA++D D +GKLGFEEF+ LW +I+ W+ ++K +D + SG + EL A
Sbjct: 50 GFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGA 109
Query: 696 LTSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKARD 745
+AG+HLN HI +++ RYS + FD+F+ C VRL M F++ D
Sbjct: 110 FEAAGFHLNQHIYSMIIRRYSDETGNMDFDNFISCLVRLDAMFRAFRSLD 159
>pdb|1F4O|A Chain A, Crystal Structure Of Grancalcin With Bound Calcium
pdb|1F4O|B Chain B, Crystal Structure Of Grancalcin With Bound Calcium
pdb|1F4Q|A Chain A, Crystal Structure Of Apo Grancalcin
pdb|1F4Q|B Chain B, Crystal Structure Of Apo Grancalcin
Length = 165
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 77/128 (60%), Gaps = 1/128 (0%)
Query: 637 FSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQAL 696
FS + CR M+AMLD D +GK+GF F++LW + WK F DQ+ SG + ELRQA+
Sbjct: 37 FSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAI 96
Query: 697 TSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKARDPSSTNKATFTL 756
GY L+ L + RYS ++ RI FDD++ C V+L+ + D FK RD A F
Sbjct: 97 GLMGYRLSPQTLTTIVKRYS-KNGRIFFDDYVACCVKLRALTDFFKKRDHLQQGSADFIY 155
Query: 757 EEWVENTL 764
+++++ T+
Sbjct: 156 DDFLQGTM 163
>pdb|1K95|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
pdb|1K94|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
pdb|1K94|B Chain B, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
Length = 165
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 77/128 (60%), Gaps = 1/128 (0%)
Query: 637 FSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQAL 696
FS + CR M+AMLD D +GK+GF F++LW + WK F DQ+ SG + ELRQA+
Sbjct: 37 FSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAI 96
Query: 697 TSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKARDPSSTNKATFTL 756
GY L+ L + RYS ++ RI FDD++ C V+L+ + D F+ RD A F
Sbjct: 97 GLMGYRLSPQTLTTIVKRYS-KNGRIFFDDYVACCVKLRALTDFFRKRDHLQQGSANFIY 155
Query: 757 EEWVENTL 764
+++++ T+
Sbjct: 156 DDFLQGTM 163
>pdb|1GJY|A Chain A, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|B Chain B, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|C Chain C, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|D Chain D, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
Length = 167
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 86/139 (61%), Gaps = 4/139 (2%)
Query: 629 TKTTTEGG---FSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSG 685
T++ GG F+ + CR MV+MLD D SG +GF EF++LW + W+ F +D + SG
Sbjct: 28 TQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSG 87
Query: 686 YLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKARD 745
+ P EL++ALT+ G+ LN +N +A RYS +I+FDD++ C V+L+ + D F+ RD
Sbjct: 88 TVDPQELQKALTTMGFRLNPQTVNSIAKRYS-TSGKITFDDYIACCVKLRALTDSFRRRD 146
Query: 746 PSSTNKATFTLEEWVENTL 764
+ F+ +++++ +
Sbjct: 147 SAQQGMVNFSYDDFIQCVM 165
>pdb|1JUO|A Chain A, Crystal Structure Of Calcium-Free Human Sorcin: A Member
Of The Penta-Ef-Hand Protein Family
pdb|1JUO|B Chain B, Crystal Structure Of Calcium-Free Human Sorcin: A Member
Of The Penta-Ef-Hand Protein Family
Length = 198
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 86/139 (61%), Gaps = 4/139 (2%)
Query: 629 TKTTTEGG---FSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSG 685
T++ GG F+ + CR MV+MLD D SG +GF EF++LW + W+ F +D + SG
Sbjct: 59 TQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSG 118
Query: 686 YLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKARD 745
+ P EL++ALT+ G+ L+ +N +A RYS + +I+FDD++ C V+L+ + D F+ RD
Sbjct: 119 TVDPQELQKALTTMGFRLSPQAVNSIAKRYS-TNGKITFDDYIACCVKLRALTDSFRRRD 177
Query: 746 PSSTNKATFTLEEWVENTL 764
+ F +++++ +
Sbjct: 178 TAQQGVVNFPYDDFIQCVM 196
>pdb|2JC2|A Chain A, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|B Chain B, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|C Chain C, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|D Chain D, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
Length = 198
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 85/139 (61%), Gaps = 4/139 (2%)
Query: 629 TKTTTEGG---FSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSG 685
T++ GG F+ + CR MV+MLD D SG +GF EF++LW + W+ F D + SG
Sbjct: 59 TQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISLDTDRSG 118
Query: 686 YLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKARD 745
+ P EL++ALT+ G+ L+ +N +A RYS + +I+FDD++ C V+L+ + D F+ RD
Sbjct: 119 TVDPQELQKALTTMGFRLSPQAVNSIAKRYS-TNGKITFDDYIACCVKLRALTDSFRRRD 177
Query: 746 PSSTNKATFTLEEWVENTL 764
+ F +++++ +
Sbjct: 178 TAQQGVVNFPYDDFIQCVM 196
>pdb|3AAK|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-20alg-2f122a
Length = 172
Score = 89.7 bits (221), Expect = 5e-18, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 620 DTPLGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMY 679
DT L AL T T F+ RS+++M D + + F EF +WK I +W++VF+ Y
Sbjct: 26 DTELQQALSNGTWTP--FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTY 83
Query: 680 DQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY--SGRDARISFDDFMMCAVRLKTM 737
D++NSG + EL+QAL+ AGY L++ +IL ++ GR +I+FDDF+ + L+ +
Sbjct: 84 DRDNSGMIDKNELKQALSGAGYRLSDQFHDILIRKFDRQGR-GQIAFDDFIQGCIVLQRL 142
Query: 738 IDLFKARDPSSTNKATFTLEEWV 760
D+F+ D + E+++
Sbjct: 143 TDIFRRYDTDQDGWIQVSYEQYL 165
>pdb|2ZN9|A Chain A, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZN9|B Chain B, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZND|A Chain A, Crystal Structure Of Ca2+-Free Form Of Des3-20alg-2
Length = 172
Score = 87.0 bits (214), Expect = 3e-17, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 620 DTPLGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMY 679
DT L AL T T F+ RS+++M D + + F EF +WK I +W++VF+ Y
Sbjct: 26 DTELQQALSNGTWTP--FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTY 83
Query: 680 DQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY--SGRDARISFDDFMMCAVRLKTM 737
D++NSG + EL+QAL+ GY L++ +IL ++ GR +I+FDDF+ + L+ +
Sbjct: 84 DRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGR-GQIAFDDFIQGCIVLQRL 142
Query: 738 IDLFKARDPSSTNKATFTLEEWV 760
D+F+ D + E+++
Sbjct: 143 TDIFRRYDTDQDGWIQVSYEQYL 165
>pdb|2ZNE|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
pdb|2ZNE|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
Length = 169
Score = 87.0 bits (214), Expect = 3e-17, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 620 DTPLGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMY 679
DT L AL T T F+ RS+++M D + + F EF +WK I +W++VF+ Y
Sbjct: 23 DTELQQALSNGTWTP--FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTY 80
Query: 680 DQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY--SGRDARISFDDFMMCAVRLKTM 737
D++NSG + EL+QAL+ GY L++ +IL ++ GR +I+FDDF+ + L+ +
Sbjct: 81 DRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGR-GQIAFDDFIQGCIVLQRL 139
Query: 738 IDLFKARDPSSTNKATFTLEEWV 760
D+F+ D + E+++
Sbjct: 140 TDIFRRYDTDQDGWIQVSYEQYL 162
>pdb|2ZN8|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Alg-2
Length = 190
Score = 87.0 bits (214), Expect = 3e-17, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 620 DTPLGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMY 679
DT L AL T T F+ RS+++M D + + F EF +WK I +W++VF+ Y
Sbjct: 44 DTELQQALSNGTWTP--FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTY 101
Query: 680 DQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY--SGRDARISFDDFMMCAVRLKTM 737
D++NSG + EL+QAL+ GY L++ +IL ++ GR +I+FDDF+ + L+ +
Sbjct: 102 DRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGR-GQIAFDDFIQGCIVLQRL 160
Query: 738 IDLFKARDPSSTNKATFTLEEWV 760
D+F+ D + E+++
Sbjct: 161 TDIFRRYDTDQDGWIQVSYEQYL 183
>pdb|2ZRS|A Chain A, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|B Chain B, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|C Chain C, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|D Chain D, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|E Chain E, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|F Chain F, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|G Chain G, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|H Chain H, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|C Chain C, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|D Chain D, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|E Chain E, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|F Chain F, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|G Chain G, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|H Chain H, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Length = 168
Score = 86.7 bits (213), Expect = 4e-17, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 620 DTPLGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMY 679
DT L AL T T F+ RS+++M D + + F EF +WK I +W++VF+ Y
Sbjct: 22 DTELQQALSNGTWTP--FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTY 79
Query: 680 DQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY--SGRDARISFDDFMMCAVRLKTM 737
D++NSG + EL+QAL+ GY L++ +IL ++ GR +I+FDDF+ + L+ +
Sbjct: 80 DRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGR-GQIAFDDFIQGCIVLQRL 138
Query: 738 IDLFKARDPSSTNKATFTLEEWV 760
D+F+ D + E+++
Sbjct: 139 TDIFRRYDTDQDGWIQVSYEQYL 161
>pdb|1HQV|A Chain A, Structure Of Apoptosis-Linked Protein Alg-2
Length = 191
Score = 85.5 bits (210), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 5/143 (3%)
Query: 620 DTPLGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMY 679
D L AL T T F+ RS+++M D + + F EF +WK I +W++VF+ Y
Sbjct: 45 DNELQQALSNGTWTP--FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTY 102
Query: 680 DQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY--SGRDARISFDDFMMCAVRLKTM 737
D++NSG + EL+QAL+ GY L++ +IL ++ GR +I+FDDF+ + L+ +
Sbjct: 103 DRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGR-GQIAFDDFIQGCIVLQRL 161
Query: 738 IDLFKARDPSSTNKATFTLEEWV 760
D+F+ D + E+++
Sbjct: 162 TDIFRRYDTDQDGWIQVSYEQYL 184
>pdb|3AAJ|A Chain A, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
pdb|3AAJ|B Chain B, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
Length = 167
Score = 82.8 bits (203), Expect = 6e-16, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 81/143 (56%), Gaps = 7/143 (4%)
Query: 620 DTPLGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMY 679
DT L AL T T F+ RS+++M D + + F EF +WK I +W++VF+ Y
Sbjct: 23 DTELQQALSNGTWTP--FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTY 80
Query: 680 DQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY--SGRDARISFDDFMMCAVRLKTM 737
D++NSG + EL+QAL+ GY L++ +IL ++ GR +I+FDDF+ + L+ +
Sbjct: 81 DRDNSGMIDKNELKQALS--GYRLSDQFHDILIRKFDRQGR-GQIAFDDFIQGCIVLQRL 137
Query: 738 IDLFKARDPSSTNKATFTLEEWV 760
D+F+ D + E+++
Sbjct: 138 TDIFRRYDTDQDGWIQVSYEQYL 160
>pdb|2I7A|A Chain A, Domain Iv Of Human Calpain 13
Length = 174
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 75/135 (55%), Gaps = 8/135 (5%)
Query: 637 FSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQAL 696
FS D CRS+VA++++ +G+L EEF +LWK + +++ VF+ Q + G L +L +A+
Sbjct: 43 FSLDECRSLVALMELKVNGRLDQEEFARLWKRLVHYQHVFQKV-QTSPGVLLSSDLWKAI 101
Query: 697 TSA----GYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKARDPSSTNKA 752
+ G ++ +L+++ RYS R+SF + +RL+ M F R+ S K
Sbjct: 102 ENTDFLRGIFISRELLHLVTLRYSDSVGRVSFPSLVCFLMRLEAMAKTF--RNLSKDGKG 159
Query: 753 TFTLE-EWVENTLYS 766
+ E EW+ +Y+
Sbjct: 160 LYLTEMEWMSLVMYN 174
>pdb|1Y1X|A Chain A, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
pdb|1Y1X|B Chain B, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
Length = 191
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 5/152 (3%)
Query: 615 GNACRDTP-LGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWK 673
G+ P L AAL + FS ++ M D + SG++ F+EF+ L I + +
Sbjct: 40 GSGAISVPELNAALSSAGVP---FSLATTEKLLHMYDKNHSGEITFDEFKDLHHFILSMR 96
Query: 674 SVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYS-GRDARISFDDFMMCAV 732
F+ D G L E+R AL S+GY ++ L ++ R + FDD++ ++
Sbjct: 97 EGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSI 156
Query: 733 RLKTMIDLFKARDPSSTNKATFTLEEWVENTL 764
+ + ++F D T + TFT + ++ ++
Sbjct: 157 FVCRVRNVFAFYDRERTGQVTFTFDTFIGGSV 188
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 676 FKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY-SGRDARISFDDFMMCAVRL 734
F+ D + SG +S EL AL+SAG + L H Y I+FD+F +
Sbjct: 33 FRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHFI 92
Query: 735 KTMIDLFKARDPS 747
+M + F+ RD S
Sbjct: 93 LSMREGFRKRDSS 105
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW-KDIRN------WKSVFKMYDQENSGYLSPFELRQ 694
+ M++ +D D +G + F+EF L K +++ K FK++D++ +GY+S ELR
Sbjct: 48 LQDMISEVDADGNGTIEFDEFLSLMAKKVKDTDAEEELKEAFKVFDKDQNGYISASELRH 107
Query: 695 ALTSAGYHLNN-HILNILAHRYSGRDARISFDDF--MMCAVR 733
+ + G L + + ++ D ++++++F MM VR
Sbjct: 108 VMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMTVR 149
>pdb|3SIB|A Chain A, Crystal Structure Of Ure3-Binding Protein, Wild-Type
Length = 220
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 645 MVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLN 704
M+ + D D +G + F EF ++K + ++F M D+ SG L P E+ AL G+++N
Sbjct: 92 MMRIFDTDFNGHISFYEFMAMYKFMELAYNLFVMNDRNRSGTLEPHEILPALQQLGFYIN 151
Query: 705 NHILNILAHRYSGR 718
++L HR R
Sbjct: 152 QRT-SLLLHRLFAR 164
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 13/109 (11%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEF-----QQLWKDIR-----NWKSVFKMYDQENSGYL 687
+K+ +++ +D D SG + FEEF +Q+ +D + +F+++D+ GY+
Sbjct: 51 TKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAELFRIFDRNADGYI 110
Query: 688 SPFELRQALTSAGYHLNN-HILNILAHRYSGRDARISFDDF--MMCAVR 733
EL + ++G H+ + I +++ D RI FD+F MM V+
Sbjct: 111 DAEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMMEGVQ 159
>pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue (1-47) Fragment Of
Troponin I
Length = 159
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEF-----QQLWKDIRN-----WKSVFKMYDQENSGYL 687
+K+ +++ +D D SG + FEEF +Q+ +D + F+++D+ GY+
Sbjct: 51 TKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYI 110
Query: 688 SPFELRQALTSAGYHLNN-HILNILAHRYSGRDARISFDDFM 728
EL + ++G H+ + I +++ D RI FD+F+
Sbjct: 111 DAEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFL 152
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 13/109 (11%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEF-----QQLWKDIR-----NWKSVFKMYDQENSGYL 687
+K+ +++ +D D SG + FEEF +Q+ +D + + F+++D+ G++
Sbjct: 54 TKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELEDCFRIFDKNADGFI 113
Query: 688 SPFELRQALTSAGYHLNNH-ILNILAHRYSGRDARISFDDF--MMCAVR 733
EL + L + G H+ I +++ D RI FD+F MM V+
Sbjct: 114 DIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGVQ 162
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 159
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 13/109 (11%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEF-----QQLWKDIRN-----WKSVFKMYDQENSGYL 687
+K+ +++ +D D SG + FEEF +Q+ +D + + F+++D+ G++
Sbjct: 51 TKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFI 110
Query: 688 SPFELRQALTSAGYHLNNH-ILNILAHRYSGRDARISFDDF--MMCAVR 733
EL + L + G H+ I +++ D RI FD+F MM V+
Sbjct: 111 DIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGVQ 159
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEF-----QQLWKDIRN-----WKSVFKMYDQENSGYL 687
+K+ +++ +D D SG + FEEF +Q+ +D + + F+++D+ G++
Sbjct: 54 TKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFI 113
Query: 688 SPFELRQALTSAGYHLNNH-ILNILAHRYSGRDARISFDDFM 728
EL + L + G H+ I +++ D RI FD+F+
Sbjct: 114 DIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFL 155
>pdb|1TNW|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
pdb|1TNX|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
Length = 162
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEF-----QQLWKDIRN-----WKSVFKMYDQENSGYL 687
+K+ +++ +D D SG + FEEF +Q+ +D + + F+++D+ G++
Sbjct: 54 TKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFI 113
Query: 688 SPFELRQALTSAGYH-LNNHILNILAHRYSGRDARISFDDFM 728
EL + L + G H + I +++ D RI FD+F+
Sbjct: 114 DIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFL 155
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEF-----QQLWKDIRN-----WKSVFKMYDQENSGYL 687
+K+ +++ +D D SG + FEEF +Q+ +D + F+++D+ G++
Sbjct: 54 TKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELADCFRIFDKNADGFI 113
Query: 688 SPFELRQALTSAGYHLNNH-ILNILAHRYSGRDARISFDDFM 728
EL + L + G H+ I +++ D RI FD+F+
Sbjct: 114 DIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFL 155
>pdb|1RFJ|A Chain A, Crystal Structure Of Potato Calmodulin Pcm6
Length = 149
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDI---RNWKSVFKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF L KD K F+++D++ +G++S ELR
Sbjct: 49 LQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRH 108
Query: 695 ALTSAGYHLNNHILN-ILAHRYSGRDARISFDDFM 728
+T+ G L + ++ ++ D +I++D+F+
Sbjct: 109 VMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFV 143
>pdb|1DEG|A Chain A, The Linker Of Des-Glu84 Calmodulin Is Bent As Seen In The
Crystal Structure
Length = 142
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLWK------DIRNWKSVFKMYDQENSGYLSPFELRQA 695
+ M+ +D D +G + F EF + D + F+++D++ +GY+S ELR
Sbjct: 44 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEIREAFRVFDKDGNGYISAAELRHV 103
Query: 696 LTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + + D ++++++F MM A
Sbjct: 104 MTNLGEKLTDEEVDEMIREANIDGDGQVNYEEFVQMMTA 142
>pdb|3SJS|A Chain A, Crystal Structure Of Ure3-Binding Protein From Entamoeba
Histolytica, (D127a,N129a) Mutant, Native Form
pdb|3SIA|A Chain A, Crystal Structure Of Ure3-Binding Protein, (D127a,N129a)
Mutant, Iodide Phased
Length = 220
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 645 MVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLN 704
M+ + D D +G + F EF ++K + ++F M + SG L P E+ AL G+++N
Sbjct: 92 MMRIFDTDFNGHISFYEFMAMYKFMELAYNLFVMNARARSGTLEPHEILPALQQLGFYIN 151
Query: 705 NHILNILAHRYSGR 718
++L HR R
Sbjct: 152 QRT-SLLLHRLFAR 164
>pdb|4AQR|A Chain A, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
pdb|4AQR|B Chain B, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
Length = 149
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDI---RNWKSVFKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF L KD K F+++D++ +G++S ELR
Sbjct: 49 LQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRH 108
Query: 695 ALTSAGYHLNNHILN-ILAHRYSGRDARISFDDFM 728
+T+ G L + ++ ++ D +I++++F+
Sbjct: 109 VMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 143
>pdb|1DMO|A Chain A, Calmodulin, Nmr, 30 Structures
pdb|3CLN|A Chain A, Structure Of Calmodulin Refined At 2.2 Angstroms
Resolution
Length = 148
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 54/100 (54%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 48 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 107
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + + D ++++++F MM A
Sbjct: 108 VMTNLGEKLTDEEVDEMIREANIDGDGQVNYEEFVQMMTA 147
>pdb|1Y0V|H Chain H, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|I Chain I, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|J Chain J, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|K Chain K, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|L Chain L, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|M Chain M, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
Length = 146
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 46 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 105
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 106 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 145
>pdb|1K93|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
Length = 144
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 44 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 103
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 104 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 143
>pdb|1XFU|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFV|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFY|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFZ|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 49 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 108
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 109 VMTNLGEKLTDEEVDQMIREADIDGDGQVNYEEFVQMMTA 148
>pdb|2VAY|A Chain A, Calmodulin Complexed With Cav1.1 Iq Peptide
pdb|2LGF|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
L-Selectin
Length = 146
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 46 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 105
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 106 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 145
>pdb|1CDL|A Chain A, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|B Chain B, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|C Chain C, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|D Chain D, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1PK0|D Chain D, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|E Chain E, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|F Chain F, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|3GP2|A Chain A, Calmodulin Bound To Peptide From Calmodulin Kinase Ii
(Camkii)
Length = 147
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 48 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 107
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 108 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 147
>pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDI---RNWKSVFKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF L KD K F+++D++ +G++S ELR
Sbjct: 48 LQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEKLKEAFRVFDKDGNGFISAAELRH 107
Query: 695 ALTSAGYHLNNHILN-ILAHRYSGRDARISFDDFMMC 730
+T+ G L + ++ ++ D ++++++F+
Sbjct: 108 VMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVQV 144
>pdb|1QTX|A Chain A, The 1.65 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDI---RNWKSVFKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF L KD K F+++D++ +G++S ELR
Sbjct: 48 LQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDGNGFISAAELRH 107
Query: 695 ALTSAGYHLNNHILN-ILAHRYSGRDARISFDDFMMC 730
+T+ G L + ++ ++ D ++++++F+
Sbjct: 108 VMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVQV 144
>pdb|1CDM|A Chain A, Modulation Of Calmodulin Plasticity In Molecular
Recognition On The Basis Of X-Ray Structures
Length = 144
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 45 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 104
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 105 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 144
>pdb|3EWT|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
pdb|3EWV|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
Length = 154
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 54 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 113
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 114 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 153
>pdb|1CM1|A Chain A, Motions Of Calmodulin-Single-Conformer Refinement
pdb|1CM4|A Chain A, Motions Of Calmodulin-four-conformer Refinement
pdb|1CKK|A Chain A, CalmodulinRAT CA2+CALMODULIN DEPENDENT PROTEIN KINASE
Fragment
pdb|1CFF|A Chain A, Nmr Solution Structure Of A Complex Of Calmodulin With A
Binding Peptide Of The Ca2+-Pump
pdb|1QIV|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd), 1:2
Complex
pdb|1QIW|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1QIW|B Chain B, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1G4Y|R Chain R, 1.60 A Crystal Structure Of The Gating Domain From Small
Conductance Potassium Channel Complexed With
Calcium-Calmodulin
pdb|1K90|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1IWQ|A Chain A, Crystal Structure Of Marcks Calmodulin Binding Domain
Peptide Complexed With Ca2+CALMODULIN
pdb|1NWD|A Chain A, Solution Structure Of Ca2+CALMODULIN BOUND TO THE C-
Terminal Domain Of Petunia Glutamate Decarboxylase
pdb|1L7Z|A Chain A, Crystal Structure Of Ca2+/calmodulin Complexed With
Myristoylated Cap-23/nap-22 Peptide
pdb|1S26|D Chain D, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|E Chain E, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|F Chain F, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1SK6|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1QX5|D Chain D, Crystal Structure Of Apocalmodulin
pdb|1QX5|I Chain I, Crystal Structure Of Apocalmodulin
pdb|1QX5|B Chain B, Crystal Structure Of Apocalmodulin
pdb|1QX5|J Chain J, Crystal Structure Of Apocalmodulin
pdb|1QX5|K Chain K, Crystal Structure Of Apocalmodulin
pdb|1QX5|T Chain T, Crystal Structure Of Apocalmodulin
pdb|1QX5|R Chain R, Crystal Structure Of Apocalmodulin
pdb|1QX5|Y Chain Y, Crystal Structure Of Apocalmodulin
pdb|1XA5|A Chain A, Structure Of Calmodulin In Complex With Kar-2, A Bis-Indol
Alkaloid
pdb|1SY9|A Chain A, Structure Of Calmodulin Complexed With A Fragment Of The
Olfactory Cng Channel
pdb|2F3Y|A Chain A, CalmodulinIQ DOMAIN COMPLEX
pdb|2F3Z|A Chain A, CalmodulinIQ-Aa Domain Complex
pdb|1X02|A Chain A, Solution Structure Of Stereo Array Isotope Labeled (Sail)
Calmodulin
pdb|2DFS|B Chain B, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|C Chain C, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|D Chain D, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|E Chain E, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|F Chain F, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|G Chain G, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|N Chain N, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|O Chain O, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|P Chain P, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|Q Chain Q, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|R Chain R, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|S Chain S, 3-D Structure Of Myosin-V Inhibited State
pdb|1YR5|A Chain A, 1.7-A Structure Of Calmodulin Bound To A Peptide From Dap
Kinase
pdb|2FOT|A Chain A, Crystal Structure Of The Complex Between Calmodulin And
Alphaii-Spectrin
pdb|2BCX|A Chain A, Crystal Structure Of Calmodulin In Complex With A
Ryanodine Receptor Peptide
pdb|1A29|A Chain A, Calmodulin Complexed With Trifluoperazine (1:2 Complex)
pdb|1CFC|A Chain A, Calcium-Free Calmodulin
pdb|1CFD|A Chain A, Calcium-Free Calmodulin
pdb|1CLL|A Chain A, Calmodulin Structure Refined At 1.7 Angstroms Resolution
pdb|1CTR|A Chain A, Drug Binding By Calmodulin: Crystal Structure Of A
Calmodulin-Trifluoperazine Complex
pdb|1LIN|A Chain A, Calmodulin Complexed With Trifluoperazine (1:4 Complex)
pdb|1MUX|A Chain A, Solution Nmr Structure Of CalmodulinW-7 Complex: The Basis
Of Diversity In Molecular Recognition, 30 Structures
pdb|2HQW|A Chain A, Crystal Structure Of Ca2+CALMODULIN BOUND TO NMDA RECEPTOR
NR1C1 Peptide
pdb|2O5G|A Chain A, Calmodulin-Smooth Muscle Light Chain Kinase Peptide
Complex
pdb|2O60|A Chain A, Calmodulin Bound To Peptide From Neuronal Nitric Oxide
Synthase
pdb|3BXK|A Chain A, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXK|C Chain C, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXL|A Chain A, Crystal Structure Of The R-Type Calcium Channel (Cav2.3)
Iq Domain And Ca2+calmodulin Complex
pdb|2K0E|A Chain A, A Coupled Equilibrium Shift Mechanism In Calmodulin-
Mediated Signal Transduction
pdb|2K0F|A Chain A, Calmodulin Complexed With Calmodulin-Binding Peptide From
Smooth Muscle Myosin Light Chain Kinase
pdb|3DVE|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain Complex
pdb|3DVJ|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain (Without
Cloning Artifact, Hm To Tv) Complex
pdb|3DVK|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.3 Iq Domain Complex
pdb|3DVM|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.1 Iq Domain Complex
pdb|2JZI|A Chain A, Structure Of Calmodulin Complexed With The Calmodulin
Binding Domain Of Calcineurin
pdb|3BYA|A Chain A, Structure Of A Calmodulin Complex
pdb|3G43|A Chain A, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|B Chain B, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|C Chain C, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|D Chain D, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|2KNE|A Chain A, Calmodulin Wraps Around Its Binding Domain In The Plasma
Membrane Ca2+ Pump Anchored By A Novel 18-1 Motif
pdb|2KDU|A Chain A, Structural Basis Of The Munc13-1CA2+-Calmodulin
Interaction: A Novel 1-26 Calmodulin Binding Motif With
A Bipartite Binding Mode
pdb|2X0G|B Chain B, X-ray Structure Of A Dap-kinase Calmodulin Complex
pdb|3GOF|A Chain A, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3GOF|B Chain B, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3IF7|A Chain A, Structure Of Calmodulin Complexed With Its First
Endogenous Inhibitor, Sphingosylphosphorylcholine
pdb|2L53|A Chain A, Solution Nmr Structure Of Apo-Calmodulin In Complex With
The Iq Motif Of Human Cardiac Sodium Channel Nav1.5
pdb|2L7L|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
Calmodulin Kinase I
pdb|2LL6|A Chain A, Solution Nmr Structure Of Cam Bound To Inos Cam Binding
Domain Peptide
pdb|2LL7|A Chain A, Solution Nmr Structure Of Cam Bound To The Enos Cam
Binding Domain Peptide
pdb|4EHQ|A Chain A, Crystal Structure Of Calmodulin Binding Domain Of Orai1 In
Complex With Ca2+CALMODULIN DISPLAYS A UNIQUE BINDING
MODE
Length = 148
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 48 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 107
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 108 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 147
>pdb|1QS7|A Chain A, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
pdb|1QS7|C Chain C, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 145
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDI---RNWKSVFKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF L KD K F+++D++ +G++S ELR
Sbjct: 45 LQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDGNGFISAAELRH 104
Query: 695 ALTSAGYHLNNHILN-ILAHRYSGRDARISFDDFMMC 730
+T+ G L + ++ ++ D ++++++F+
Sbjct: 105 VMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVQV 141
>pdb|2WEL|D Chain D, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 150
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 50 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 109
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 110 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 149
>pdb|2BE6|A Chain A, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|B Chain B, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|C Chain C, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|1ZUZ|A Chain A, Calmodulin In Complex With A Mutant Peptide From Human
Drp-1 Kinase
Length = 150
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 49 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 108
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 109 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148
>pdb|1IQ5|A Chain A, CalmodulinNEMATODE CA2+CALMODULIN DEPENDENT KINASE KINASE
Fragment
pdb|1LVC|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|2BKI|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|2BKI|D Chain D, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|1WRZ|A Chain A, Calmodulin Complexed With A Peptide From A Human
Death-Associated Protein Kinase
pdb|2V01|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Pb
pdb|2V02|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Ba
pdb|2R28|A Chain A, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2R28|B Chain B, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2W73|A Chain A, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|B Chain B, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|E Chain E, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|F Chain F, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|3HR4|B Chain B, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|D Chain D, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|F Chain F, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|H Chain H, Human Inos Reductase And Calmodulin Complex
pdb|3OXQ|A Chain A, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|B Chain B, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|C Chain C, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|D Chain D, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|2Y4V|A Chain A, Crystal Structure Of Human Calmodulin In Complex With A
Dap Kinase-1 Mutant (W305y) Peptide
pdb|3SJQ|A Chain A, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|3SJQ|B Chain B, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|4DCK|B Chain B, Crystal Structure Of The C-Terminus Of Voltage-Gated
Sodium Channel In Complex With Fgf13 And Cam
pdb|3SUI|A Chain A, Crystal Structure Of Ca2+-Calmodulin In Complex With A
Trpv1 C- Terminal Peptide
pdb|4G27|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Phenylurea
pdb|4G28|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Ebio-1
Length = 149
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 49 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 108
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 109 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148
>pdb|4DJC|A Chain A, 1.35 A Crystal Structure Of The Nav1.5 Diii-Iv-CaCAM
COMPLEX
Length = 152
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 52 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 111
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 112 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 151
>pdb|2YGG|B Chain B, Complex Of Cambr And Cam
Length = 150
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 49 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 108
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 109 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148
>pdb|1PRW|A Chain A, Crystal Structure Of Bovine Brain Ca++ Calmodulin In A
Compact Form
Length = 149
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 49 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 108
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 109 VMTNLGEXLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148
>pdb|1UP5|A Chain A, Chicken Calmodulin
pdb|1UP5|B Chain B, Chicken Calmodulin
Length = 148
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 48 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 107
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 108 VMTNLGEXLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 147
>pdb|2K0J|A Chain A, Solution Structure Of Cam Complexed To Drp1p
pdb|2K61|A Chain A, Solution Structure Of Cam Complexed To Dapk Peptide
Length = 148
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 48 LQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 107
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 108 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 147
>pdb|2QFE|A Chain A, Distal C2-Like Domain Of Human Calpain-7
Length = 148
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 34/148 (22%)
Query: 358 RGKKWEMSV-YEGEWVRGVTAGGCRNYLETFWCNP--QFKITLTEVDENDEDGKCTVIIG 414
RG + +S G+W G +AGGC N+ ET NP QF I T ++I
Sbjct: 17 RGSPYTLSKRINGKW-SGQSAGGCGNFQETHKNNPIYQFHIEKTG----------PLLIE 65
Query: 415 LMQKNRRAQKKTGAECLTIGFAVYQIEDPDNVPTPLDLNFFKYNASCARAP-SFINLREV 473
L G ++GF V + + P F + ++ R ++ L +
Sbjct: 66 L----------RGPRQYSVGFEVVTVS---TLGDPGPHGFLRKSSGDYRCGFCYLELENI 112
Query: 474 SCRFKLPPGVYCIVPSTFEPNEEGEFIL 501
P G++ I+PSTF P +EG F L
Sbjct: 113 ------PSGIFNIIPSTFLPKQEGPFFL 134
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
pdb|1J1D|A Chain A, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|D Chain D, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|A Chain A, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|D Chain D, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 161
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKS------VFKMYDQENSGYLSPFE 691
+ M+ +D D SG + F+EF + KD KS +F+M+D+ GY+ E
Sbjct: 57 LQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEE 116
Query: 692 LRQALTSAGYHLN-NHILNILAHRYSGRDARISFDDFM 728
L+ L + G + + I ++ D RI +D+F+
Sbjct: 117 LKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 154
>pdb|2F2O|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2O|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
Length = 179
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 49 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 108
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 109 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148
>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin
Length = 169
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 639 KDVCRSMVAMLDVDRSGKLGFEEFQQLW------KDIRN-WKSVFKMYDQENSGYLSPFE 691
K+ + M++ +D D SG + FEEF + +D R F+++D +NSG ++ +
Sbjct: 63 KEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKD 122
Query: 692 LRQALTSAGYHLNNHILN-ILAHRYSGRDARISFDDFM 728
LR+ G +L L ++A D I D+F+
Sbjct: 123 LRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFI 160
>pdb|2IX7|A Chain A, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
pdb|2IX7|B Chain B, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
Length = 145
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 47 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 106
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDFM 728
+T+ G L + ++ + D ++++++F+
Sbjct: 107 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 141
>pdb|4GOW|D Chain D, Crystal Structure Of Ca2+CAM:KV7.4 (KCNQ4) B HELIX COMPLEX
Length = 144
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 46 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 105
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDFM 728
+T+ G L + ++ + D ++++++F+
Sbjct: 106 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 140
>pdb|2LV6|A Chain A, The Complex Between Ca-calmodulin And Skeletal Muscle
Myosin Light Chain Kinase From Combination Of Nmr And
Aqueous And Contrast-matched Saxs Data
Length = 148
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +G++S ELR
Sbjct: 48 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRH 107
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 108 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTA 147
>pdb|3EVR|A Chain A, Crystal Structure Of Calcium Bound Monomeric Gcamp2
Length = 411
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 312 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 371
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 372 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 411
>pdb|3O78|A Chain A, The Structure Of Ca2+ Sensor (Case-12)
pdb|3O78|B Chain B, The Structure Of Ca2+ Sensor (Case-12)
Length = 415
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 315 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 374
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 375 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 414
>pdb|3O77|A Chain A, The Structure Of Ca2+ Sensor (Case-16)
Length = 415
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 315 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 374
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 375 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 414
>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C
In The Troponin C-Troponin I Complex
Length = 161
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKS------VFKMYDQENSGYLSPFEL 692
+ M+ +D D SG + F+EF + KD K+ +F+M+D+ GY+ EL
Sbjct: 58 QEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKTEEELSDLFRMFDKNADGYIDLEEL 117
Query: 693 RQALTSAGYHLN-NHILNILAHRYSGRDARISFDDFM 728
+ L + G + + I ++ D RI +D+F+
Sbjct: 118 KIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 154
>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1)
pdb|3EVV|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2 (#2)
pdb|3EK4|A Chain A, Calcium-Saturated Gcamp2 Monomer
pdb|3EK7|A Chain A, Calcium-Saturated Gcamp2 Dimer
Length = 449
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 349 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 408
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 409 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 448
>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKS------------VFKMYDQENSGYLSP 689
+ M+ +D D SG + F+EF + +R+ K +F+M+D+ GY+
Sbjct: 57 LQEMIDEVDEDGSGTVDFDEFLVMM--VRSMKDDSKGKTEEELSDLFRMFDKNADGYIDL 114
Query: 690 FELRQALTSAGYHLN-NHILNILAHRYSGRDARISFDDFM 728
EL+ L + G + + I ++ D RI +D+F+
Sbjct: 115 EELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 154
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 634 EGGFSKDVCRSMVAMLDVDRSGKLGFEEF------QQLWKDIRNWKSVFKMYDQENSGYL 687
EG +D S++ +LD+D SG + + EF + + + FKM+D++ SG +
Sbjct: 375 EGSTIEDQIDSLMPLLDMDGSGSIEYSEFIASAIDRTILLSRERMERAFKMFDKDGSGKI 434
Query: 688 SPFELRQALTSAGYHLNNHIL-NILAHRYSGRDARISFDDFM 728
S EL + + A + L +I+ + +D + F++F+
Sbjct: 435 STKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFV 476
>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1)
Length = 450
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 350 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 409
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 410 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 449
>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER
Length = 449
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 349 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 408
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 409 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 448
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 349 LQDMINEVDADGNGTIDFPEFLTMMARWMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 408
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 409 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 448
>pdb|2JT0|A Chain A, Solution Structure Of F104w Cardiac Troponin C
Length = 161
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKS------VFKMYDQENSGYLSPFE 691
+ M+ +D D SG + F+EF + KD KS +F+M+D+ GY+ E
Sbjct: 57 LQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMWDKNADGYIDLDE 116
Query: 692 LRQALTSAGYHLN-NHILNILAHRYSGRDARISFDDFM 728
L+ L + G + + I ++ D RI +D+F+
Sbjct: 117 LKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 154
>pdb|3SG2|A Chain A, Crystal Structure Of Gcamp2-T116v,D381y
Length = 449
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLWKDIRNW-------KSVFKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + + + F+++D++ +GY+S ELR
Sbjct: 349 LQDMINEVDADGNGTIDFPEFLTMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRH 408
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 409 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 448
>pdb|3SG7|A Chain A, Crystal Structure Of Gcamp3-Kf(Linker 1)
Length = 448
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 348 LQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 407
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 408 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 447
>pdb|3SG5|A Chain A, Crystal Structure Of Dimeric Gcamp3-D380y, Qp(Linker 1),
Lp(Linker 2)
Length = 448
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLWKDIRNW-------KSVFKMYDQENSGYLSPFELRQ 694
+ M+ +D D G + F EF + + + F+++D++ +GY+S ELR
Sbjct: 348 LQDMINEVDADGDGTIDFPEFLTMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRH 407
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 408 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 447
>pdb|1OOJ|A Chain A, Structural Genomics Of Caenorhabditis Elegans : Calmodulin
Length = 149
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +G++S ELR
Sbjct: 49 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRH 108
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDFM 728
+T+ G L + ++ + D ++++++F+
Sbjct: 109 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
>pdb|2BBM|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|2BBN|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|1MXE|A Chain A, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|1MXE|B Chain B, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|4CLN|A Chain A, Structure Of A Recombinant Calmodulin From Drosophila
Melanogaster Refined At 2.2-Angstroms Resolution
Length = 148
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +G++S ELR
Sbjct: 48 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRH 107
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDFM 728
+T+ G L + ++ + D ++++++F+
Sbjct: 108 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 142
>pdb|1AHR|A Chain A, Calmodulin Mutant With A Two Residue Deletion In The
Central Helix
Length = 146
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 642 CRSMVAMLDVDRSGKLGFEEF-----QQLWKDIRNWKSVFKMYDQENSGYLSPFELRQAL 696
+ M+ +D D +G + F EF +++ + F+++D++ +G++S ELR +
Sbjct: 48 LQDMINEVDADGNGTIDFPEFLTMMARKMKDSEEEIREAFRVFDKDGNGFISAAELRHVM 107
Query: 697 TSAGYHLNNHILNILAHRYS-GRDARISFDDFM 728
T+ G L + ++ + D ++++++F+
Sbjct: 108 TNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 140
>pdb|3SG3|A Chain A, Crystal Structure Of Gcamp3-D380y
Length = 449
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLWKDIRNW-------KSVFKMYDQENSGYLSPFELRQ 694
+ M+ +D D G + F EF + + + F+++D++ +GY+S ELR
Sbjct: 349 LQDMINEVDADGDGTIDFPEFLTMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRH 408
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 409 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 448
>pdb|2JTZ|A Chain A, Solution Structure And Chemical Shift Assignments Of The
F104-To-5-Flurotryptophan Mutant Of Cardiac Troponin C
Length = 161
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKS------VFKMYDQENSGYLSPFE 691
+ M+ +D D SG + F+EF + KD KS +F+M D+ GY+ E
Sbjct: 57 LQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMXDKNADGYIDLDE 116
Query: 692 LRQALTSAGYHLN-NHILNILAHRYSGRDARISFDDFM 728
L+ L + G + + I ++ D RI +D+F+
Sbjct: 117 LKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 154
>pdb|3SG4|A Chain A, Crystal Structure Of Gcamp3-D380y, Lp(Linker 2)
Length = 448
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLWKDIRNW-------KSVFKMYDQENSGYLSPFELRQ 694
+ M+ +D D G + F EF + + + F+++D++ +GY+S ELR
Sbjct: 348 LQDMINEVDADGDGTIDFPEFLTMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRH 407
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 408 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 447
>pdb|2BKH|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
pdb|2VAS|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|3GN4|B Chain B, Myosin Lever Arm
pdb|3GN4|D Chain D, Myosin Lever Arm
pdb|3GN4|F Chain F, Myosin Lever Arm
pdb|3GN4|H Chain H, Myosin Lever Arm
pdb|3L9I|C Chain C, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
pdb|2X51|B Chain B, M6 Delta Insert1
pdb|4ANJ|B Chain B, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
pdb|4DBP|C Chain C, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
pdb|4DBQ|B Chain B, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 149
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +G++S ELR
Sbjct: 49 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRH 108
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDFM 728
+T+ G L + ++ + D ++++++F+
Sbjct: 109 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
>pdb|2VB6|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 149
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +G++S ELR
Sbjct: 49 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRH 108
Query: 695 ALTSAGYHLNNHILN-ILAHRYSGRDARISFDDFM 728
+T+ G L + ++ ++ D ++++++F+
Sbjct: 109 VMTNLGEKLTDEEVDEMIRESDIDGDGQVNYEEFV 143
>pdb|1CLM|A Chain A, Structure Of Paramecium Tetraurelia Calmodulin At 1.8
Angstroms Resolution
Length = 148
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW-KDIRNWKS------VFKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF L + ++ S FK++D++ +G +S ELR
Sbjct: 48 LQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRH 107
Query: 695 ALTSAGYHL-NNHILNILAHRYSGRDARISFDDFMMCAV 732
+T+ G L ++ + ++ D I++++F+ V
Sbjct: 108 VMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMV 146
>pdb|1EXR|A Chain A, The 1.0 Angstrom Crystal Structure Of Ca+2 Bound
Calmodulin
pdb|1N0Y|A Chain A, Crystal Structure Of Pb-Bound Calmodulin
pdb|1N0Y|B Chain B, Crystal Structure Of Pb-Bound Calmodulin
pdb|1OSA|A Chain A, Crystal Structure Of Recombinant Paramecium Tetraurelia
Calmodulin At 1.68 Angstroms Resolution
Length = 148
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW-KDIRNWKS------VFKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF L + ++ S FK++D++ +G +S ELR
Sbjct: 48 LQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRH 107
Query: 695 ALTSAGYHL-NNHILNILAHRYSGRDARISFDDFMMCAV 732
+T+ G L ++ + ++ D I++++F+ V
Sbjct: 108 VMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMV 146
>pdb|2HF5|A Chain A, The Structure And Function Of A Novel Two-Site Calcium-
Binding Fragment Of Calmodulin
Length = 68
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ +D D +G + F EF + KD + + + F+++D++ +GY+S ELR
Sbjct: 3 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 62
Query: 695 ALTSAG 700
+T+ G
Sbjct: 63 VMTNLG 68
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEF----QQLWKDI---RNWKSVFKMYDQENSGYLSPFELRQ 694
+ M+ +D D G + F EF + KD + F+++D++ +GY+S ELR
Sbjct: 340 LQDMINEVDADGDGTIDFPEFLIMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 399
Query: 695 ALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MMCA 731
+T+ G L + ++ + D ++++++F MM A
Sbjct: 400 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 439
>pdb|2JT8|A Chain A, Solution Structure Of The F153-To-5-Flurotryptophan Mutant
Of Human Cardiac Troponin C
Length = 161
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKS------VFKMYDQENSGYLSPFE 691
+ M+ +D D SG + F+EF + KD KS +F+M+D+ GY+ E
Sbjct: 57 LQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLDE 116
Query: 692 LRQALTSAGYHLN-NHILNILAHRYSGRDARISFDDFM 728
L+ L + G + + I ++ D RI +D+ +
Sbjct: 117 LKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEXL 154
>pdb|2JT3|A Chain A, Solution Structure Of F153w Cardiac Troponin C
Length = 161
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKS------VFKMYDQENSGYLSPFE 691
+ M+ +D D SG + F+EF + KD KS +F+M+D+ GY+ E
Sbjct: 57 LQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLDE 116
Query: 692 LRQALTSAGYHLN-NHILNILAHRYSGRDARISFDDFM 728
L+ L + G + + I ++ D RI +D+++
Sbjct: 117 LKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEWL 154
>pdb|2OPO|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|C Chain C, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|D Chain D, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
Length = 86
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 667 KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDD 726
+DI + + +FK +D G +S EL AL + G + + ++A + D ISFD+
Sbjct: 8 QDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDE 67
Query: 727 F 727
F
Sbjct: 68 F 68
>pdb|2KZ2|A Chain A, Calmodulin, C-Terminal Domain, F92e Mutant
Length = 94
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 662 FQQLWKDIRNWKSV---FKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYS-G 717
FQ L KD + + + F++ D++ +GY+S ELR +T+ G L + ++ +
Sbjct: 18 FQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADID 77
Query: 718 RDARISFDDF--MMCA 731
D ++++++F MM A
Sbjct: 78 GDGQVNYEEFVQMMTA 93
>pdb|2KN2|A Chain A, Solution Structure Of The C-Terminal Domain Of Soybean
Calmodulin Isoform 4 Fused With The Calmodulin-Binding
Domain Of Ntmkp1
Length = 92
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNN-HILNILAHRYSGRDARISFDDF--MM 729
K FK++D++ +GY+S ELR + + G L + + ++ D ++++++F MM
Sbjct: 12 KEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMM 71
Query: 730 CAVR 733
VR
Sbjct: 72 MTVR 75
>pdb|2LMT|A Chain A, Nmr Structure Of Androcam
pdb|2LMU|A Chain A, Androcam At High Calcium
pdb|2LMV|A Chain A, Androcam At High Calcium With Three Explicit Ca2+
Length = 148
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 51/96 (53%), Gaps = 10/96 (10%)
Query: 642 CRSMVAMLDVDRSGKLGFEEF-QQLWKDIRN------WKSVFKMYDQENSGYLSPFELRQ 694
+ ++A + + +G+L F EF + K +R + FK++D++ G++SP ELR
Sbjct: 48 LQDLIAEAENNNNGQLNFTEFCGIMAKQMRETDTEEEMREAFKIFDRDGDGFISPAELRF 107
Query: 695 ALTSAGYHLNNHILN--ILAHRYSGRDARISFDDFM 728
+ + G + + ++ I + G D I++++F+
Sbjct: 108 VMINLGEKVTDEEIDEMIREADFDG-DGMINYEEFV 142
>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
Length = 149
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 639 KDVCRSMVAMLDVDRSGKLGFEEFQQLW------KDIR-NWKSVFKMYDQENSGYLSPFE 691
K+ + M+A +D D SG + FEEF Q+ +D R F+++D + +G +S
Sbjct: 43 KEEIKKMIADIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKN 102
Query: 692 LRQALTSAGYHLNNHILN 709
L++ G ++ + L
Sbjct: 103 LKRVAKELGENMTDEELQ 120
>pdb|2LV7|A Chain A, Solution Structure Of Ca2+-Bound Cabp7 N-Terminal Doman
Length = 100
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 668 DIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYS-GRDARISFDD 726
++ + FK++D++ +G++S EL A+ S GY N L ++ R D ++ F++
Sbjct: 34 ELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEE 93
Query: 727 FM 728
F+
Sbjct: 94 FV 95
>pdb|1GGW|A Chain A, Cdc4p From Schizosaccharomyces Pombe
Length = 140
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 676 FKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDFM 728
F+++D++ +G + ELR LTS G L+N ++ L +D +++ DF+
Sbjct: 82 FQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKDGMVNYHDFV 134
>pdb|2AAO|A Chain A, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
pdb|2AAO|B Chain B, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
Length = 166
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 650 DVDRSGKLGFEEFQQLWKDIRNWK------SVFKMYDQENSGYLSPFELRQALTSAGYHL 703
DVD SG + ++EF + + + F +D++ SGY++P EL+QA G
Sbjct: 73 DVDNSGTIDYKEFIAATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFGVE- 131
Query: 704 NNHILNILAHRYSGRDARISFDDFM 728
+ I + D RI +++F+
Sbjct: 132 DVRIEELXRDVDQDNDGRIDYNEFV 156
>pdb|2RRT|A Chain A, Solution Structure Of Magnesium-Bound Form Of Calmodulin
C-Domain E104dE140D MUTANT
Length = 72
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MM 729
+ F+++D++ +GY+S +LR +T+ G L + ++ + D +++++DF MM
Sbjct: 10 REAFRVFDKDGNGYISAADLRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEDFVQMM 69
Query: 730 CA 731
A
Sbjct: 70 TA 71
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLWKDI-------RNWKSVFKMYDQENSGYLSPFELRQA 695
+ ++ + D D +G++ F+EF + + + F++YD + GY+S EL Q
Sbjct: 56 QRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQV 115
Query: 696 L-TSAGYHLNNHILNILAHRY-----SGRDARISFDDFMMCAV 732
L G +L + L + + D RISF++F CAV
Sbjct: 116 LKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEF--CAV 156
>pdb|2P6B|B Chain B, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
pdb|2P6B|D Chain D, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
Length = 156
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLWKDI-------RNWKSVFKMYDQENSGYLSPFELRQA 695
+ ++ + D D +G++ F+EF + + + F++YD + GY+S EL Q
Sbjct: 42 QRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQV 101
Query: 696 L-TSAGYHLNNHILNILAHRY-----SGRDARISFDDFMMCAV 732
L G +L + L + + D RISF++F CAV
Sbjct: 102 LKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEF--CAV 142
>pdb|3LL8|B Chain B, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
pdb|3LL8|D Chain D, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
Length = 155
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLWKDI-------RNWKSVFKMYDQENSGYLSPFELRQA 695
+ ++ + D D +G++ F+EF + + + F++YD + GY+S EL Q
Sbjct: 41 QRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQV 100
Query: 696 L-TSAGYHLNNHILNILAHRY-----SGRDARISFDDFMMCAV 732
L G +L + L + + D RISF++F CAV
Sbjct: 101 LKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEF--CAV 141
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLWKDI-------RNWKSVFKMYDQENSGYLSPFELRQA 695
+ ++ + D D +G++ F+EF + + + F++YD + GY+S EL Q
Sbjct: 55 QRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQV 114
Query: 696 L-TSAGYHLNNHILNILAHRY-----SGRDARISFDDFMMCAV 732
L G +L + L + + D RISF++F CAV
Sbjct: 115 LKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEF--CAV 155
>pdb|1KK8|C Chain C, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 154
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 19/86 (22%)
Query: 640 DVCRSMVA------MLDVDRSGKLG-----FEEFQQLWKDI--------RNWKSVFKMYD 680
DVCR + + V + K+G FEEF ++ + ++ FK +D
Sbjct: 35 DVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFD 94
Query: 681 QENSGYLSPFELRQALTSAGYHLNNH 706
+E G++S ELR LT+ G L++
Sbjct: 95 REGQGFISGAELRHVLTALGERLSDE 120
>pdb|3JTD|C Chain C, Calcium-Free Scallop Myosin Regulatory Domain With
Elc-D19a Point Mutation
Length = 156
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 19/86 (22%)
Query: 640 DVCRSMVA------MLDVDRSGKLG-----FEEFQQLWKDI--------RNWKSVFKMYD 680
DVCR + + V + K+G FEEF ++ + ++ FK +D
Sbjct: 35 DVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFD 94
Query: 681 QENSGYLSPFELRQALTSAGYHLNNH 706
+E G++S ELR LT+ G L++
Sbjct: 95 REGQGFISGAELRHVLTALGERLSDE 120
>pdb|1YRU|B Chain B, Crystal Structure Analysis Of The Adenylyl Cyclaes
Catalytic Domain Of Adenylyl Cyclase Toxin Of Bordetella
Pertussis In Presence Of C-Terminal Calmodulin And 1mm
Calcium Chloride
pdb|1YRT|B Chain B, Crystal Structure Analysis Of The Adenylyl Cyclaes
Catalytic Domain Of Adenylyl Cyclase Toxin Of Bordetella
Pertussis In Presence Of C-Terminal Calmodulin
Length = 74
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MM 729
+ F+++D++ +GY+S ELR +T+ G L + ++ + D ++++++F MM
Sbjct: 12 REAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 71
Query: 730 CA 731
A
Sbjct: 72 TA 73
>pdb|1SCM|C Chain C, Structure Of The Regulatory Domain Of Scallop Myosin At
2.8 Angstroms Resolution
Length = 149
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 19/86 (22%)
Query: 640 DVCRSMVA------MLDVDRSGKLG-----FEEFQQLWKDI--------RNWKSVFKMYD 680
DVCR + + V + K+G FEEF ++ + ++ FK +D
Sbjct: 32 DVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFD 91
Query: 681 QENSGYLSPFELRQALTSAGYHLNNH 706
+E G++S ELR LT+ G L++
Sbjct: 92 REGQGFISGAELRHVLTALGERLSDE 117
>pdb|1WDC|C Chain C, Scallop Myosin Regulatory Domain
pdb|1B7T|Z Chain Z, Myosin Digested By Papain
pdb|1KK7|Z Chain Z, Scallop Myosin In The Near Rigor Conformation
pdb|1L2O|C Chain C, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|C Chain C, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|C Chain C, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
pdb|1QVI|Z Chain Z, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|Z Chain Z, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|C Chain C, Structure Of Nucleotide-free Scallop Myosin S1
pdb|3JVT|C Chain C, Calcium-Bound Scallop Myosin Regulatory Domain (Lever Arm)
With Reconstituted Complete Light Chains
Length = 156
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 657 LGFEEFQQLWKDI--------RNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNH 706
L FEEF ++ + ++ FK +D+E G++S ELR LT+ G L++
Sbjct: 63 LPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDE 120
>pdb|1DFK|Z Chain Z, Nucleotide-Free Scallop Myosin S1-Near Rigor State
pdb|1DFL|Z Chain Z, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|X Chain X, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 152
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 19/86 (22%)
Query: 640 DVCRSMVA------MLDVDRSGKLG-----FEEFQQLWKDI--------RNWKSVFKMYD 680
DVCR + + V + K+G FEEF ++ + ++ FK +D
Sbjct: 33 DVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFD 92
Query: 681 QENSGYLSPFELRQALTSAGYHLNNH 706
+E G++S ELR LT+ G L++
Sbjct: 93 REGQGFISGAELRHVLTALGERLSDE 118
>pdb|1CMF|A Chain A, Nmr Solution Structure Of Apo Calmodulin Carboxy-Terminal
Domain
pdb|1CMG|A Chain A, Nmr Solution Structure Of Calcium-Loaded Calmodulin
Carboxy- Terminal Domain
Length = 73
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MM 729
+ F+++D++ +GY+S ELR +T+ G L + ++ + D ++++++F MM
Sbjct: 11 REAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 70
Query: 730 CA 731
A
Sbjct: 71 TA 72
>pdb|1FW4|A Chain A, Crystal Structure Of E. Coli Fragment Tr2c From Calmodulin
To 1.7 A Resolution
pdb|2LQP|A Chain A, Nmr Solution Structure Of The Ca2+-Calmodulin C-Terminal
Domain In A Complex With A Peptide (Nscate) From The
L-Type Voltage-Gated Calcium Channel Alpha1c Subunit
Length = 71
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MM 729
+ F+++D++ +GY+S ELR +T+ G L + ++ + D ++++++F MM
Sbjct: 9 REAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 68
Query: 730 CA 731
A
Sbjct: 69 TA 70
>pdb|2W4T|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 151
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 19/86 (22%)
Query: 640 DVCRSMVA------MLDVDRSGKLG-----FEEFQQLWKDI--------RNWKSVFKMYD 680
DVCR + + V + K+G FEEF ++ + ++ FK +D
Sbjct: 32 DVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFD 91
Query: 681 QENSGYLSPFELRQALTSAGYHLNNH 706
+E G++S ELR LT+ G L++
Sbjct: 92 REGQGFISGAELRHVLTALGERLSDE 117
>pdb|3FWB|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|E Chain E, Sac3:sus1:cdc31 Complex
pdb|3FWC|I Chain I, Sac3:sus1:cdc31 Complex
pdb|3FWC|M Chain M, Sac3:sus1:cdc31 Complex
Length = 161
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 653 RSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHL-NNHILNIL 711
+SG L E ++ ++I F ++D N G+L EL+ A+ + G+ L IL+++
Sbjct: 9 QSGPLNSELLEEQKQEIY---EAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLI 65
Query: 712 AHRYSGRDARISFDDFMMCAVRLKTMIDLFKARDPSSTNKATFTL 756
S + +DDF + M + RDP K F L
Sbjct: 66 DEYDSEGRHLMKYDDFYIV------MGEKILKRDPLDEIKRAFQL 104
>pdb|2LHI|A Chain A, Solution Structure Of Ca2+CNA1 PEPTIDE-Bound Ycam
Length = 176
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 649 LDVDRSGKLGFEEFQQLWKDIRNWKS---------VFKMYDQENSGYLSPFELRQALTSA 699
+DVD + ++ F EF L R KS FK++D+ G +S EL+ LTS
Sbjct: 56 IDVDGNHQIEFSEFLALMS--RQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSI 113
Query: 700 GYHLNNHILNILAHRYSGRDARISFDDF 727
G L + ++ + S I+ F
Sbjct: 114 GEKLTDAEVDDMLREVSDGSGEINIQQF 141
>pdb|1JC2|A Chain A, Complex Of The C-Domain Of Troponin C With Residues 1-40
Of Troponin I
Length = 76
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 676 FKMYDQENSGYLSPFELRQALTSAGYH-LNNHILNILAHRYSGRDARISFDDFM 728
F+++D+ G++ EL + L + G H + I +++ D RI FD+F+
Sbjct: 16 FRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFL 69
>pdb|1LKJ|A Chain A, Nmr Structure Of Apo Calmodulin From Yeast Saccharomyces
Cerevisiae
Length = 146
Score = 33.1 bits (74), Expect = 0.61, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 649 LDVDRSGKLGFEEFQQLWKDIRNWKS---------VFKMYDQENSGYLSPFELRQALTSA 699
+DVD + ++ F EF L R KS FK++D+ G +S EL+ LTS
Sbjct: 55 IDVDGNHQIEFSEFLALMS--RQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSI 112
Query: 700 GYHLNNHILNILAHRYSGRDARISFDDF 727
G L + ++ + S I+ F
Sbjct: 113 GEKLTDAEVDDMLREVSDGSGEINIQQF 140
>pdb|2ROB|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 C-Terminal Domain
Length = 70
Score = 32.7 bits (73), Expect = 0.69, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNN-HILNILAHRYSGRDARISFDDF--MM 729
K FK++D++ +GY+S ELR + + G L + + ++ D ++++++F MM
Sbjct: 7 KEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMM 66
Query: 730 CAVR 733
VR
Sbjct: 67 MTVR 70
>pdb|2COL|B Chain B, Crystal Structure Analysis Of CyaaC-Cam With Pyrophosphate
Length = 67
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYS-GRDARISFDDFM 728
+ F+++D++ +GY+S ELR +T+ G L + ++ + D ++++++F+
Sbjct: 8 REAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 64
>pdb|1FI5|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin
C Bound To The N Terminal Domain Of Cardiac Troponin I.
pdb|1SBJ|A Chain A, Nmr Structure Of The Mg2+-Loaded C Terminal Domain Of
Cardiac Troponin C Bound To The N Terminal Domain Of
Cardiac Troponin I
pdb|1SCV|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin
C Bound To The N Terminal Domain Of Cardiac Troponin I
Length = 81
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 674 SVFKMYDQENSGYLSPFELRQALTSAGYHLN-NHILNILAHRYSGRDARISFDDFM 728
+F+M+D+ GY+ EL+ L + G + + I ++ D RI +D+F+
Sbjct: 19 DLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 74
>pdb|2EC6|C Chain C, Placopecten Striated Muscle Myosin Ii
Length = 156
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 23/94 (24%)
Query: 640 DVCRSMVA------MLDVDRSGKLG-----FEEFQQLWKDI--------RNWKSVFKMYD 680
DVCR + + V + K+G FEEF ++ + ++ FK +D
Sbjct: 35 DVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFD 94
Query: 681 QENSGYLSPFELRQALTSAGYHLN----NHILNI 710
+E G++S ELR L+ G L+ + I+N+
Sbjct: 95 REGQGFISGAELRHVLSGLGERLSDEEVDEIINL 128
>pdb|3PN7|C Chain C, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3PN7|F Chain F, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3TS5|C Chain C, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TS5|F Chain F, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TUY|C Chain C, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
pdb|3TUY|F Chain F, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
Length = 156
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 23/94 (24%)
Query: 640 DVCRSMVA------MLDVDRSGKLG-----FEEFQQLWKDI--------RNWKSVFKMYD 680
DVCR + + V + K+G FEEF ++ + ++ FK +D
Sbjct: 35 DVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEEFLPAYEGLMDCEQGTYADYMEAFKTFD 94
Query: 681 QENSGYLSPFELRQALTSAGYHLN----NHILNI 710
+E G++S ELR L+ G L+ + I+N+
Sbjct: 95 REGQGFISGAELRHVLSGLGERLSDEEVDEIINL 128
>pdb|2OS8|C Chain C, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|C Chain C, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 157
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 23/94 (24%)
Query: 640 DVCRSMVA------MLDVDRSGKLG-----FEEFQQLWKDI--------RNWKSVFKMYD 680
DVCR + + V + K+G FEEF ++ + ++ FK +D
Sbjct: 36 DVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEEFLPAYEGLMDCEQGTYADYMEAFKTFD 95
Query: 681 QENSGYLSPFELRQALTSAGYHLN----NHILNI 710
+E G++S ELR L+ G L+ + I+N+
Sbjct: 96 REGQGFISGAELRHVLSGLGERLSDEEVDEIINL 129
>pdb|3PM8|A Chain A, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
pdb|3PM8|B Chain B, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
Length = 197
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 668 DIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYH-LNNHILNILAHRYSGRDARISFDD 726
+I N +++F D +NSG LS E+ L GY + I +L S +I + D
Sbjct: 55 EINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTD 114
Query: 727 FMMCAVRLKTMI 738
F+ + +T +
Sbjct: 115 FLAATIDKQTYL 126
>pdb|3CTN|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 30
Structures
Length = 76
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 674 SVFKMYDQENSGYLSPFELRQALTSAGYHLN-NHILNILAHRYSGRDARISFDDFM 728
+F+M+D+ GY+ EL+ L + G + + I ++ D RI +D+F+
Sbjct: 14 DLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 69
>pdb|1OZS|A Chain A, C-Domain Of Human Cardiac Troponin C In Complex With The
Inhibitory Region Of Human Cardiac Troponin I
Length = 73
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 674 SVFKMYDQENSGYLSPFELRQALTSAGYHLN-NHILNILAHRYSGRDARISFDDFM 728
+F+M+D+ GY+ EL+ L + G + + I ++ D RI +D+F+
Sbjct: 11 DLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 66
>pdb|2LHH|A Chain A, Solution Structure Of Ca2+-Bound Ycam
Length = 128
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 649 LDVDRSGKLGFEEFQQLWKDIRNWKS---------VFKMYDQENSGYLSPFELRQALTSA 699
+DVD + ++ F EF L R KS FK++D+ G +S EL+ LTS
Sbjct: 55 IDVDGNHQIEFSEFLALMS--RQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSI 112
Query: 700 GYHLNN 705
G L +
Sbjct: 113 GEKLTD 118
>pdb|1Y6W|A Chain A, Trapped Intermediate Of Calmodulin
Length = 148
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 649 LDVDRSGKLGFEEF----QQLWKDIRNWKSV---FKMYDQENSGYLSPFELRQALTSAGY 701
+D D +G + F EF + KD + + + F+++D++ +GY+S ELR T+ G
Sbjct: 55 VDADGNGTINFPEFLTXXARCXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGE 114
Query: 702 HLNN 705
L +
Sbjct: 115 KLTD 118
>pdb|1IH0|A Chain A, Structure Of The C-Domain Of Human Cardiac Troponin C In
Complex With Ca2+ Sensitizer Emd 57033
Length = 71
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 674 SVFKMYDQENSGYLSPFELRQALTSAGYHLN-NHILNILAHRYSGRDARISFDDFM 728
+F+M+D+ GY+ EL+ L + G + + I ++ D RI +D+F+
Sbjct: 9 DLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 64
>pdb|2KDH|A Chain A, The Solution Structure Of Human Cardiac Troponin C In
Complex With The Green Tea Polyphenol; (-)-
Epigallocatechin-3-Gallate
pdb|2L98|A Chain A, Structure Of Trans-Resveratrol In Complex With The Cardiac
Regulatory Protein Troponin C
Length = 72
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 674 SVFKMYDQENSGYLSPFELRQALTSAGYHLN-NHILNILAHRYSGRDARISFDDFM 728
+F+M+D+ GY+ EL+ L + G + + I ++ D RI +D+F+
Sbjct: 10 DLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 65
>pdb|2PMY|A Chain A, Ef-Hand Domain Of Human Rasef
pdb|2PMY|B Chain B, Ef-Hand Domain Of Human Rasef
Length = 91
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLWKDIR----NWKSVFKMYDQENSGYLS 688
RS+ A D +RSG+L EEF+ L ++R + ++VF+ D + G ++
Sbjct: 30 RSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAIT 79
>pdb|3EKJ|A Chain A, Calcium-Free Gcamp2 (Calcium Binding Deficient Mutant)
Length = 449
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 53/101 (52%), Gaps = 12/101 (11%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKSV---FKMYDQENSGYLSPFELRQ 694
+ M+ + D +G + F +F + KD + + + F+++ ++ +GY+S +LR
Sbjct: 349 LQDMINEVGADGNGTIDFPQFLTMMARKMKDTDSEEEIREAFRVFGKDGNGYISAAQLRH 408
Query: 695 ALTSAGYHLNNHILNILAHRYSG--RDARISFDDF--MMCA 731
+T+ G L + ++ + R +G D +++++ F MM A
Sbjct: 409 VMTNLGEKLTDEEVDEMI-REAGIDGDGQVNYEQFVQMMTA 448
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 26/135 (19%)
Query: 637 FSKDVCRSMVAMLDVDRSGKLGFEEF------QQLWKDIRNWKSVFKMYDQENSGYLSPF 690
F++ V R+ D + G + F EF K + K F MYD + +GY+S
Sbjct: 64 FAEHVFRT----FDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKA 119
Query: 691 ELRQALTSAGYHLNNHIL--------------NILAHRYSGRDARISFDDFMMCAVRLKT 736
E+ + + A Y + + ++ I + RD ++S ++F+ A +
Sbjct: 120 EMLE-IVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPS 178
Query: 737 MIDLFKARDPSSTNK 751
++ L + DPSS +
Sbjct: 179 IVRLLQC-DPSSAGQ 192
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 649 LDVDRSGKLGFEEFQQLWKDIRNWKS------VFKMYDQENSGYLSPFELRQALTSAGYH 702
+D D++G + + EF + D + S F+M+D +NSG +S EL +
Sbjct: 415 VDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVD 474
Query: 703 LNNHILNILAHRYSGRDARISFDDFMMCAVRL 734
+ ++L+ D + FD+F ++L
Sbjct: 475 -SETWKSVLSEVDKNNDGEVDFDEFQQMLLKL 505
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 649 LDVDRSGKLGFEEFQQLWKDIRNWKS------VFKMYDQENSGYLSPFELRQALTSAGYH 702
+D D++G + + EF + D + S F+M+D +NSG +S EL +
Sbjct: 414 VDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVD 473
Query: 703 LNNHILNILAHRYSGRDARISFDDFMMCAVRL 734
+ ++L+ D + FD+F ++L
Sbjct: 474 -SETWKSVLSEVDKNNDGEVDFDEFQQMLLKL 504
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 649 LDVDRSGKLGFEEFQQLWKDIRNWKS------VFKMYDQENSGYLSPFELRQALTSAGYH 702
+D D++G + + EF + D + S F+M+D +NSG +S EL +
Sbjct: 391 VDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVD 450
Query: 703 LNNHILNILAHRYSGRDARISFDDFMMCAVRL 734
+ ++L+ D + FD+F ++L
Sbjct: 451 -SETWKSVLSEVDKNNDGEVDFDEFQQMLLKL 481
>pdb|1F71|A Chain A, Refined Solution Structure Of Calmodulin C-Terminal Domain
pdb|1J7P|A Chain A, Solution Structure Of Calcium Calmodulin C-Terminal Domain
pdb|2K3S|B Chain B, Haddock-Derived Structure Of The Ch-Domain Of The
Smoothelin-Like 1 Complexed With The C-Domain Of
Apocalmodulin
pdb|2KUH|A Chain A, Halothane Binds To Druggable Sites In Calcium-Calmodulin:
Solution Structure Of Halothane-Cam C-Terminal Domain
pdb|2LLQ|A Chain A, Solution Nmr-Derived Structure Of Calmodulin C-Lobe Bound
With Er Alpha Peptide
Length = 67
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MM 729
+ F+++D++ +GY+S ELR +T+ G L + ++ + D ++++++F MM
Sbjct: 5 REAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 64
Query: 730 CA 731
A
Sbjct: 65 TA 66
>pdb|4DS7|A Chain A, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|B Chain B, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|C Chain C, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|D Chain D, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
Length = 147
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 649 LDVDRSGKLGFEEFQQLWKDIRNWK---------SVFKMYDQENSGYLSPFELRQALTSA 699
+DVD + + F EF L R K FK++D+ G +S EL+ LTS
Sbjct: 56 IDVDGNHAIEFSEFLALMS--RQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSI 113
Query: 700 GYHLNNHILNILAHRYSGRDARISFDDF 727
G L + ++ + S I+ F
Sbjct: 114 GEKLTDAEVDEMLREVSDGSGEINIKQF 141
>pdb|2RO9|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 1 C-Terminal Domain
Length = 69
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYS-GRDARISFDDFM 728
K F+++D++ +G++S ELR +T+ G L + ++ + D +I++++F+
Sbjct: 7 KEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 63
>pdb|2JNF|A Chain A, Solution Structure Of Fly Troponin C, Isoform F1
Length = 158
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 18/106 (16%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEF--------------QQLWKDIRNWKSVFKMYDQEN 683
+K R ++ D +G + F+ F +Q+ +++R F++YD+E
Sbjct: 48 TKSTIRQLIDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELRE---AFRLYDKEG 104
Query: 684 SGYLSPFELRQALTSAGYHLNNHILNILAHRYSGR-DARISFDDFM 728
+GY+S +R+ L L++ L+ + + F++FM
Sbjct: 105 NGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFM 150
>pdb|1ZOT|B Chain B, Crystal Structure Analysis Of The CyaaC-Cam With Pmeapp
Length = 69
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYS-GRDARISFDDF--MM 729
+ F+++D++ +GY+S ELR +T+ G L + ++ + D ++++++F MM
Sbjct: 8 REAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 67
Query: 730 CA 731
A
Sbjct: 68 TA 69
>pdb|1XFX|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 649 LDVDRSGKLGFEEF----QQLWKDIRNWKSV---FKMYDQENSGYLSPFELRQALTSAGY 701
+D D +G + F EF + KD + + + F+++D++ +GY+S ELR T+ G
Sbjct: 56 VDADGNGTIDFPEFLTXXARKXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGE 115
Query: 702 HLNN 705
L +
Sbjct: 116 KLTD 119
>pdb|1NIW|A Chain A, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|C Chain C, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|E Chain E, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|G Chain G, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1QX7|I Chain I, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|R Chain R, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|A Chain A, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|B Chain B, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|M Chain M, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
Length = 148
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 649 LDVDRSGKLGFEEF----QQLWKDIRNWKSV---FKMYDQENSGYLSPFELRQALTSAGY 701
+D D +G + F EF + KD + + + F+++D++ +GY+S ELR T+ G
Sbjct: 55 VDADGNGTIDFPEFLTXXARKXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGE 114
Query: 702 HLNN 705
L +
Sbjct: 115 KLTD 118
>pdb|1S6I|A Chain A, Ca2+-Regulatory Region (Cld) From Soybean
Calcium-Dependent Protein Kinase-Alpha (Cdpk) In The
Presence Of Ca2+ And The Junction Domain (Jd)
Length = 188
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 667 KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHL-NNHILNILAHRYSGRDARISFD 725
++I K +FKM D +NSG ++ EL+ L G L + I +++ + I +
Sbjct: 7 EEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYG 66
Query: 726 DFMMCAVRLKTM 737
+F+ V L +
Sbjct: 67 EFIAATVHLNKL 78
>pdb|3O4Y|A Chain A, Crystal Structure Of Cad Domain Of The Plasmodium Vivax
Cdpk, Pvx_11610
Length = 196
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 668 DIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDF 727
D++ K+ F D+E G ++ +LR+ L +G L + +L S I + +F
Sbjct: 53 DVQKLKAAFLHLDEEGKGNITKLQLRKGLERSGLMLPPNFDLLLDQIDSDGSGNIDYTEF 112
Query: 728 MMCAV 732
+ A+
Sbjct: 113 LAAAI 117
>pdb|2B1U|A Chain A, Solution Structure Of Calmodulin-Like Skin Protein C
Terminal Domain
Length = 71
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 669 IRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYS-GRDARISFDDF 727
+ + + F+ +DQ+ G+++ ELR+A+ G L L+ + +D R+++++F
Sbjct: 5 LEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEF 64
>pdb|2K2A|A Chain A, Solution Structure Of The Apo C Terminal Domain Of
Lethoceru C Isoform F1
Length = 70
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 670 RNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGR-DARISFDDFM 728
+ + F++YD+E +GY+S +R+ L L++ L+ + + F++FM
Sbjct: 3 QELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFM 62
>pdb|3DTP|E Chain E, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
pdb|3DTP|F Chain F, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 196
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 653 RSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILA 712
RSG F F Q ++ +K F++ DQ+ G++S ++R S G L+ +
Sbjct: 42 RSGSNVFAMFTQ--HQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMV 99
Query: 713 HRYSG 717
G
Sbjct: 100 AEAPG 104
>pdb|3PUI|A Chain A, Cocaine Esterase With Mutations G4c, S10c
Length = 587
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 188 VDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEW-RFIPD------HEKRELGLTF 240
VD+ P+ G +P++ +RNP+ + AWS +S W F+ D + R L F
Sbjct: 24 VDLYRPDADGPVPVLLVRNPYDKFDVF--AWSTQSTNWLEFVRDGYAVVIQDTRGL---F 78
Query: 241 DDDGEF 246
+GEF
Sbjct: 79 ASEGEF 84
>pdb|3I2H|A Chain A, Cocaine Esterase With Mutation L169k, Bound To Dtt Adduct
Length = 587
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 188 VDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEW-RFIPD------HEKRELGLTF 240
VD+ P+ G +P++ +RNP+ + AWS +S W F+ D + R L F
Sbjct: 24 VDLYRPDADGPVPVLLVRNPYDKFDVF--AWSTQSTNWLEFVRDGYAVVIQDTRGL---F 78
Query: 241 DDDGEF 246
+GEF
Sbjct: 79 ASEGEF 84
>pdb|3IDA|A Chain A, Thermostable Cocaine Esterase With Mutations L169k And
G173q, Bound To Dtt Adduct
Length = 587
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 188 VDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEW-RFIPD------HEKRELGLTF 240
VD+ P+ G +P++ +RNP+ + AWS +S W F+ D + R L F
Sbjct: 24 VDLYRPDADGPVPVLLVRNPYDKFDVF--AWSTQSTNWLEFVRDGYAVVIQDTRGL---F 78
Query: 241 DDDGEF 246
+GEF
Sbjct: 79 ASEGEF 84
>pdb|3I2J|A Chain A, Cocaine Esterase, Wild Type, Without A Ligand
pdb|3I2K|A Chain A, Cocaine Esterase, Wild Type, Bound To A Dtt Adduct
pdb|3PUH|A Chain A, Cocaine Esterase, Wild-Type Biologically Active Dimer
pdb|3PUH|B Chain B, Cocaine Esterase, Wild-Type Biologically Active Dimer
Length = 587
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 188 VDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEW-RFIPD------HEKRELGLTF 240
VD+ P+ G +P++ +RNP+ + AWS +S W F+ D + R L F
Sbjct: 24 VDLYRPDADGPVPVLLVRNPYDKFDVF--AWSTQSTNWLEFVRDGYAVVIQDTRGL---F 78
Query: 241 DDDGEF 246
+GEF
Sbjct: 79 ASEGEF 84
>pdb|3I2G|A Chain A, Cocaine Esterase With Mutation G173q, Bound To Dtt Adduct
Length = 587
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 188 VDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEW-RFIPD------HEKRELGLTF 240
VD+ P+ G +P++ +RNP+ + AWS +S W F+ D + R L F
Sbjct: 24 VDLYRPDADGPVPVLLVRNPYDKFDVF--AWSTQSTNWLEFVRDGYAVVIQDTRGL---F 78
Query: 241 DDDGEF 246
+GEF
Sbjct: 79 ASEGEF 84
>pdb|2GV5|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|D Chain D, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|E Chain E, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|C Chain C, Crystal Structure Of Sfi1pCDC31P COMPLEX
Length = 161
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Query: 653 RSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHL-NNHILNIL 711
+SG L E ++ ++I F ++D N G+L EL+ A + G+ L IL+++
Sbjct: 9 QSGPLNSELLEEQKQEIY---EAFSLFDXNNDGFLDYHELKVAXKALGFELPKREILDLI 65
Query: 712 AHRYSGRDARISFDDFMMCAVRLKTMIDLFKARDPSSTNKATFTL 756
S +DDF + K + RDP K F L
Sbjct: 66 DEYDSEGRHLXKYDDFYIVXGE-KIL-----KRDPLDEIKRAFQL 104
>pdb|3I2I|A Chain A, Cocaine Esterase With Mutation T172r, Bound To Dtt Adduct
Length = 587
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 188 VDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEW-RFIPD------HEKRELGLTF 240
VD+ P+ G +P++ +RNP+ + AWS +S W F+ D + R L F
Sbjct: 24 VDLYRPDADGPVPVLLVRNPYDKFDVF--AWSTQSTNWLEFVRDGYAVVIQDTRGL---F 78
Query: 241 DDDGEF 246
+GEF
Sbjct: 79 ASEGEF 84
>pdb|3I2F|A Chain A, Cocaine Esterase With Mutations T172r G173Q, BOUND TO DTT
ADDUCT
Length = 587
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 188 VDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEW-RFIPD------HEKRELGLTF 240
VD+ P+ G +P++ +RNP+ + AWS +S W F+ D + R L F
Sbjct: 24 VDLYRPDADGPVPVLLVRNPYDKFDVF--AWSTQSTNWLEFVRDGYAVVIQDTRGL---F 78
Query: 241 DDDGEF 246
+GEF
Sbjct: 79 ASEGEF 84
>pdb|1L7Q|A Chain A, Ser117ala Mutant Of Bacterial Cocaine Esterase Coce
Length = 574
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 188 VDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEW-RFIPD------HEKRELGLTF 240
VD+ P+ G +P++ +RNP+ + AWS +S W F+ D + R L F
Sbjct: 24 VDLYRPDADGPVPVLLVRNPYDKFDVF--AWSTQSTNWLEFVRDGYAVVIQDTRGL---F 78
Query: 241 DDDGEF 246
+GEF
Sbjct: 79 ASEGEF 84
>pdb|1JU3|A Chain A, Bacterial Cocaine Esterase Complex With Transition State
Analog
pdb|1JU4|A Chain A, Bacterial Cocaine Esterase Complex With Product
Length = 583
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 188 VDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEW-RFIPD------HEKRELGLTF 240
VD+ P+ G +P++ +RNP+ + AWS +S W F+ D + R L F
Sbjct: 24 VDLYRPDADGPVPVLLVRNPYDKFDVF--AWSTQSTNWLEFVRDGYAVVIQDTRGL---F 78
Query: 241 DDDGEF 246
+GEF
Sbjct: 79 ASEGEF 84
>pdb|1L7R|A Chain A, Tyr44phe Mutant Of Bacterial Cocaine Esterase Coce
Length = 574
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 188 VDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEW-RFIPD------HEKRELGLTF 240
VD+ P+ G +P++ +RNP+ + AWS +S W F+ D + R L F
Sbjct: 24 VDLYRPDADGPVPVLLVRNPFDKFDVF--AWSTQSTNWLEFVRDGYAVVIQDTRGL---F 78
Query: 241 DDDGEF 246
+GEF
Sbjct: 79 ASEGEF 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,031,147
Number of Sequences: 62578
Number of extensions: 1195601
Number of successful extensions: 3292
Number of sequences better than 100.0: 173
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 2916
Number of HSP's gapped (non-prelim): 331
length of query: 766
length of database: 14,973,337
effective HSP length: 106
effective length of query: 660
effective length of database: 8,340,069
effective search space: 5504445540
effective search space used: 5504445540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)