RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14118
(766 letters)
>gnl|CDD|128526 smart00230, CysPc, Calpain-like thiol protease family.
Calpain-like thiol protease family (peptidase family
C2). Calcium activated neutral protease (large subunit).
Length = 318
Score = 319 bits (820), Expect = e-103
Identities = 134/215 (62%), Positives = 163/215 (75%), Gaps = 11/215 (5%)
Query: 63 YGRWVDVVIDDRLPTYYGKLVFLHSSTDNEFWSALLEKAYAKLHGSYEALKGGSTCEAME 122
+G+WVDVVIDDRLPTY G+LVF+HS++ NEFWSALLEKAYAKL+G YEALKGGST EA+E
Sbjct: 110 FGKWVDVVIDDRLPTYNGELVFMHSNSRNEFWSALLEKAYAKLNGCYEALKGGSTTEALE 169
Query: 123 DFTGGVSEMYELNEA---PSNLWQILLKAHERSSLMGCSIEPDPSV-LEMQTPQGLVKGH 178
D TGGV+E +L EA P NL++ L KA ER SLMGCSI +V E Q GLVKGH
Sbjct: 170 DLTGGVAESIDLKEASKDPDNLFEDLFKAFERGSLMGCSIGAGTAVEEEEQKDCGLVKGH 229
Query: 179 AYSITRIKYVDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEWRFIPDHEKRELGL 238
AYS+T ++ V + L+R+RNPWG + EWNG WSD S EWR + EK+ LGL
Sbjct: 230 AYSVTDVREVQG------RRQELLRLRNPWG-QVEWNGPWSDDSPEWRSVSASEKKNLGL 282
Query: 239 TFDDDGEFWMSYKDFLKYFSRLEICNLSPDSLIED 273
TFDDDGEFWMS++DFL++F ++EICNL+PDSL E
Sbjct: 283 TFDDDGEFWMSFEDFLRHFDKVEICNLNPDSLEER 317
Score = 85.8 bits (213), Expect = 4e-18
Identities = 37/64 (57%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 289 EGEWVRGVTAGGSQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEICNLSPDS 348
+ EW G + S EWR + EK+ LGLTFDDDGEFWMS++DFL++F ++EICNL+PDS
Sbjct: 255 QVEW-NGPWSDDSPEWRSVSASEKKNLGLTFDDDGEFWMSFEDFLRHFDKVEICNLNPDS 313
Query: 349 LIED 352
L E
Sbjct: 314 LEER 317
Score = 57.0 bits (138), Expect = 1e-08
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 20 FAAIRDRCLSQGTLFEDPDFPCDDSSIFYSKMPPKSFEWMRP 61
+ A+R C GTLFEDP FP ++ S+F+S+ K W RP
Sbjct: 1 YEALRQYCKESGTLFEDPLFPANNGSLFFSQRQRKFVVWKRP 42
>gnl|CDD|216041 pfam00648, Peptidase_C2, Calpain family cysteine protease.
Length = 302
Score = 314 bits (807), Expect = e-101
Identities = 135/206 (65%), Positives = 159/206 (77%), Gaps = 8/206 (3%)
Query: 63 YGRWVDVVIDDRLPTYYGKLVFLHSSTDNEFWSALLEKAYAKLHGSYEALKGGSTCEAME 122
YG WVDVV+DDRLPT G+LVF+HS+ NEFWSALLEKAYAKLHG YEAL GGST EAME
Sbjct: 102 YGEWVDVVVDDRLPTKDGELVFVHSAERNEFWSALLEKAYAKLHGCYEALSGGSTTEAME 161
Query: 123 DFTGGVSEMYELNEAPS--NLWQILLKAHERSSLMGCSI-EPDPSVLEMQTPQGLVKGHA 179
DFTGGV+E YEL +APS NL++I+ KA ER SLMGCSI P +E +T +GLVKGHA
Sbjct: 162 DFTGGVAEWYELKQAPSDLNLFKIIAKALERGSLMGCSIDITSPVDMEARTFKGLVKGHA 221
Query: 180 YSITRIKYVDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEWRFIPDHEKRELGLT 239
YS+T +K V+ K LIR+RNPWG + EW GAWSD S EWRFI E+ L L
Sbjct: 222 YSVTGVKEVNYR----GEKQKLIRLRNPWG-QVEWTGAWSDGSPEWRFIDPDERARLQLQ 276
Query: 240 FDDDGEFWMSYKDFLKYFSRLEICNL 265
F++DGEFWMS++DFL++FSRLEICNL
Sbjct: 277 FEEDGEFWMSFEDFLRHFSRLEICNL 302
Score = 82.1 bits (203), Expect = 6e-17
Identities = 33/56 (58%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Query: 289 EGEWVRGVTAGGSQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEICNL 344
+ EW G + GS EWRFI E+ L L F++DGEFWMS++DFL++FSRLEICNL
Sbjct: 248 QVEW-TGAWSDGSPEWRFIDPDERARLQLQFEEDGEFWMSFEDFLRHFSRLEICNL 302
Score = 41.3 bits (97), Expect = 0.001
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 33 LFEDPDFPCDDSSIFYSKMPPKS-----FEWMRP 61
LF DP FP D S+ Y + P S EW RP
Sbjct: 1 LFVDPSFPADPKSLGYKPLGPYSSKTRGIEWKRP 34
>gnl|CDD|238004 cd00044, CysPc, Calpains, domains IIa, IIb; calcium-dependent
cytoplasmic cysteine proteinases, papain-like. Functions
in cytoskeletal remodeling processes, cell
differentiation, apoptosis and signal transduction.
Length = 315
Score = 265 bits (680), Expect = 1e-82
Identities = 100/207 (48%), Positives = 130/207 (62%), Gaps = 14/207 (6%)
Query: 63 YGRWVDVVIDDRLPTYYGKLVFLHSSTDNEFWSALLEKAYAKLHGSYEALKGGSTCEAME 122
G WV+VVIDDRLPT G L+F+HS NE W ALLEKAYAKLHGSYEAL GG+T EA+E
Sbjct: 118 NGEWVEVVIDDRLPTSNGGLLFMHSRDRNELWVALLEKAYAKLHGSYEALVGGNTAEALE 177
Query: 123 DFTGGVSEMYEL-----NEAPSNLWQILLKAHERSSLMGCSIEPDPSVLEMQTPQGLVKG 177
D TGG +E +L + ++L+ +LL + SL+GCS E +T GLVKG
Sbjct: 178 DLTGGPTERIDLKSADASSGDNDLFALLLSFLQGGSLIGCSTGSRSEE-EARTANGLVKG 236
Query: 178 HAYSITRIKYVDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEWRFIPDHEKRELG 237
HAYS+ ++ V + L+R+RNPWG W G D S+ W D E+++L
Sbjct: 237 HAYSVLDVREVQ------EEGLRLLRLRNPWGVGEWWGGWSDDSSEWWV--IDAERKKLL 288
Query: 238 LTFDDDGEFWMSYKDFLKYFSRLEICN 264
L+ DDGEFWMS++DFL+ F L +CN
Sbjct: 289 LSGKDDGEFWMSFEDFLRNFDGLYVCN 315
Score = 62.0 bits (151), Expect = 3e-10
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 289 EGEWVRGVTAGGSQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEICN 343
GEW G + S+ W D E+++L L+ DDGEFWMS++DFL+ F L +CN
Sbjct: 263 VGEWWGGWSDDSSEWWV--IDAERKKLLLSGKDDGEFWMSFEDFLRNFDGLYVCN 315
Score = 47.7 bits (114), Expect = 1e-05
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 23 IRDRCLSQGTLFEDPDFPCDDSSIFYSKM-----PPKSFEWMRPM 62
+ CL G LFEDPDFP +DSS+ + P K EW RP
Sbjct: 2 LLQICLLSGVLFEDPDFPPNDSSLGFDDSLSNGQPKKVIEWKRPS 46
>gnl|CDD|216279 pfam01067, Calpain_III, Calpain large subunit, domain III. The
function of the domain III and I are currently unknown.
Domain II is a cysteine protease and domain IV is a
calcium binding domain. Calpains are believed to
participate in intracellular signaling pathways mediated
by calcium ions.
Length = 142
Score = 232 bits (594), Expect = 1e-72
Identities = 85/150 (56%), Positives = 114/150 (76%), Gaps = 8/150 (5%)
Query: 361 KWEMSVYEGEWVRGVTAGGCRNYLETFWCNPQFKITLTEVDENDEDGKCTVIIGLMQKNR 420
KW+++VYEG WVRG TAGGCRN+ +TFW NPQ++++LTE D++D C+V++ LMQKNR
Sbjct: 1 KWKVTVYEGSWVRGSTAGGCRNFPDTFWTNPQYRLSLTEPDDDD----CSVLVALMQKNR 56
Query: 421 RAQKKTGAECLTIGFAVYQIEDPDNVPTPLDLNFFKYNASCARAPSFINLREVSCRFKLP 480
R ++K GA+ LTIGFA+Y++ + L FF N S AR+ ++INLREV+ RF+LP
Sbjct: 57 RKKRKEGADNLTIGFAIYKV----DPQKELPRKFFSQNRSIARSSTYINLREVTERFRLP 112
Query: 481 PGVYCIVPSTFEPNEEGEFILRVFSEHKNN 510
PG Y IVPSTFEP +EGEF+LRVFSE +
Sbjct: 113 PGTYVIVPSTFEPGQEGEFLLRVFSEKPID 142
Score = 42.3 bits (100), Expect = 2e-04
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 282 KWEMSVYEGEWVRGVTAGGSQ 302
KW+++VYEG WVRG TAGG +
Sbjct: 1 KWKVTVYEGSWVRGSTAGGCR 21
>gnl|CDD|238132 cd00214, Calpain_III, Calpain, subdomain III. Calpains are
calcium-activated cytoplasmic cysteine proteinases,
participate in cytoskeletal remodeling processes, cell
differentiation, apoptosis and signal transduction.
Catalytic domain and the two calmodulin-like domains are
separated by C2-like domain III. Domain III plays an
important role in calcium-induced activation of calpain
involving electrostatic interactions with subdomain II.
Proposed to mediate calpain's interaction with
phospholipids and translocation to cytoplasmic/nuclear
membranes. CD includes subdomain III of typical and
atypical calpains.
Length = 150
Score = 227 bits (581), Expect = 1e-70
Identities = 87/154 (56%), Positives = 106/154 (68%), Gaps = 5/154 (3%)
Query: 360 KKWEMSVYEGEWVRGVTAGGCRNYLETFWCNPQFKITLTEVDENDEDGKCTVIIGLMQKN 419
+KW + GEW RG TAGGCRN +TFW NPQF+I + E D D++GKCTV+I LMQKN
Sbjct: 1 RKWHTKSFNGEWRRGQTAGGCRNNPDTFWTNPQFRIRVPEPD--DDEGKCTVLIALMQKN 58
Query: 420 RRAQKKTGAECLTIGFAVYQIEDPDNVPTPLDLNFFKYNASCARAPSFINLREVSCRFKL 479
RR +K G + LTIGF VY++ + L +FF + A AR+ +FIN REVS RF+L
Sbjct: 59 RRHLRKKGLDLLTIGFHVYKVPGEN---RHLRRDFFLHKAPRARSSTFINTREVSLRFRL 115
Query: 480 PPGVYCIVPSTFEPNEEGEFILRVFSEHKNNMEE 513
PPG Y IVPSTFEP EEGEF+LRVFSE E
Sbjct: 116 PPGEYVIVPSTFEPGEEGEFLLRVFSEKSIKSSE 149
Score = 40.7 bits (96), Expect = 6e-04
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 281 KKWEMSVYEGEWVRGVTAGGSQ 302
+KW + GEW RG TAGG +
Sbjct: 1 RKWHTKSFNGEWRRGQTAGGCR 22
>gnl|CDD|214786 smart00720, calpain_III, calpain_III domain.
Length = 143
Score = 209 bits (533), Expect = 7e-64
Identities = 84/151 (55%), Positives = 100/151 (66%), Gaps = 8/151 (5%)
Query: 362 WEMSVYEGEWVRGVTAGGCRNYLETFWCNPQFKITLTEVDENDEDGKCTVIIGLMQKNRR 421
W +G W RG TAGGCRNY TFW NPQF+ITL E D D CTV+I LMQKNRR
Sbjct: 1 WHTKSVQGSWTRGQTAGGCRNYPATFWTNPQFRITLEEPD----DDDCTVLIALMQKNRR 56
Query: 422 AQKKTGAECLTIGFAVYQIEDPDNVPTPLDLNFFKYNASCARAPSFINLREVSCRFKLPP 481
++ GA+ LTIGFAVY++ L +FF NA A + +IN REVS RF+LPP
Sbjct: 57 RLRRKGADFLTIGFAVYKVPKEL----HLRRDFFLSNAPRASSGDYINGREVSERFRLPP 112
Query: 482 GVYCIVPSTFEPNEEGEFILRVFSEHKNNME 512
G Y IVPSTFEPN+EG+F+LRVFSE +
Sbjct: 113 GEYVIVPSTFEPNQEGDFLLRVFSEGPFKLT 143
Score = 38.5 bits (90), Expect = 0.003
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 283 WEMSVYEGEWVRGVTAGGSQE 303
W +G W RG TAGG +
Sbjct: 1 WHTKSVQGSWTRGQTAGGCRN 21
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 43.7 bits (104), Expect = 8e-06
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLWKDIRN------WKSVFKMYDQENSGYLSPFELRQA 695
R + D D G + +E + K + + + D++ G + E +
Sbjct: 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61
Query: 696 LT 697
+
Sbjct: 62 MA 63
Score = 38.3 bits (90), Expect = 5e-04
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHL-NNHILNILAHRYSGRDARISFDDFMM 729
+ F+++D++ G +S EL+ AL S G L I ++ D +I F++F+
Sbjct: 3 REAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60
Score = 33.7 bits (78), Expect = 0.024
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 633 TEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWK 667
G S++ M+ +D D GK+ FEEF +L
Sbjct: 29 LGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELMA 63
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 41.3 bits (98), Expect = 4e-05
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 635 GGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKD 668
S++ + D D GK+ FEEF L +
Sbjct: 19 ISLSEEEVDILFREFDTDGDGKISFEEFCVLLQR 52
Score = 26.7 bits (60), Expect = 6.6
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 684 SGYLSPFELRQALTSAGYHLNNHILNILAHRY-SGRDARISFDDFMMCAVRL 734
G ++ EL++AL G L+ ++IL + + D +ISF++F + RL
Sbjct: 2 KGLITREELKRALALLGISLSEEEVDILFREFDTDGDGKISFEEFCVLLQRL 53
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 40.8 bits (96), Expect = 7e-05
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 677 KMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSG-----RDARISFDDFM 728
K+ D++ GY+ ELR+ L + G L + + L D RISF++F+
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFL 57
Score = 31.6 bits (72), Expect = 0.16
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 647 AMLDVDRSGKLGFEEFQQLWKDIRN----------WKSVFKMYDQENSGYLSPFELRQAL 696
+LD D G + EE ++L K + ++ F D++ G +S E +A+
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
Score = 30.8 bits (70), Expect = 0.26
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEFQQLW 666
+++ + +D D G++ FEEF +
Sbjct: 32 VEELIEADFNEIDKDGDGRISFEEFLEAM 60
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 37.6 bits (88), Expect = 5e-04
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 672 WKSVFKMYDQENSGYLSPFELRQALTSAG 700
+ FK++D++ GY+S ELR+AL S G
Sbjct: 2 LREAFKLFDKDGDGYISAEELRKALRSLG 30
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 40.1 bits (94), Expect = 8e-04
Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 10/97 (10%)
Query: 645 MVAMLDVDRSGKLGFEEFQQLW-KDIRN------WKSVFKMYDQENSGYLSPFELRQALT 697
M+ +D D +G + F EF L + +++ K FK++D++ +G++S ELR +T
Sbjct: 52 MINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMT 111
Query: 698 SAGYHLNNHILNILAHRY-SGRDARISFDDF--MMCA 731
+ G L + ++ + D +I++++F MM +
Sbjct: 112 NLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 37.7 bits (88), Expect = 0.007
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 667 KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDD 726
+ I+ K F+++D+++ G + EL + L S G++ + +N L + + F +
Sbjct: 17 EQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPE 76
Query: 727 FM-MCAVRLKTMI---DLFKA 743
F+ + +V+LK +L +A
Sbjct: 77 FLTVMSVKLKRGDKEEELREA 97
Score = 35.0 bits (81), Expect = 0.063
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 676 FKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY-SGRDARISFDDF 727
FK++D+++ GY+S ELR+ L S G L++ + L Y D I +++F
Sbjct: 98 FKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEF 150
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not undergo
calcium dependent conformational changes.
Length = 29
Score = 32.4 bits (75), Expect = 0.031
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLWKDI 669
+ D D GK+ FEEF++L K +
Sbjct: 2 LKEAFKEFDKDGDGKISFEEFKELLKKL 29
Score = 30.5 bits (70), Expect = 0.14
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 672 WKSVFKMYDQENSGYLSPFELRQALTS 698
K FK +D++ G +S E ++ L
Sbjct: 2 LKEAFKEFDKDGDGKISFEEFKELLKK 28
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 34.7 bits (80), Expect = 0.064
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 637 FSKDVCRSMVAMLDVDRSGKLGFEEFQQLW------KDIRN-WKSVFKMYDQENSGYLSP 689
K+ + M+A +D D SGK+ FEEF + +D R F+++D + +G +S
Sbjct: 50 PKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISL 109
Query: 690 FELRQALTSAGYHLNNHILNILAHRY-SGRDARISFDDFM 728
L++ G + + L + D IS ++F
Sbjct: 110 KNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFY 149
Score = 33.9 bits (78), Expect = 0.12
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNN-HILNILAHRYSGRDARISFDDFM-MC 730
+ F ++D + SG + P EL+ A+ S G+ I ++A +I F++F+ +
Sbjct: 20 REAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIM 79
Query: 731 AVRLKT------MIDLFKARDPSSTNKATFT 755
+L ++ F+ D T K +
Sbjct: 80 TKKLGERDPREEILKAFRLFDDDKTGKISLK 110
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 30.8 bits (71), Expect = 0.12
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 672 WKSVFKMYDQENSGYLSPFELRQALTS 698
K F+++D++ G + E + L +
Sbjct: 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28
Score = 28.1 bits (64), Expect = 1.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLWKDI 669
+ + D D GK+ FEEF+ L K +
Sbjct: 3 KEAFRLFDKDGDGKIDFEEFKDLLKAL 29
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 32.5 bits (74), Expect = 0.97
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 623 LGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSV------F 676
+ ++E TE F+ R ++A++D D G+L F EF L K N + F
Sbjct: 166 VSCSIEDPVETERSFA----RRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELF 221
Query: 677 KMYDQENSGYLSPFELRQAL 696
K D G ++ EL L
Sbjct: 222 KAADLNGDGVVTIDELAALL 241
>gnl|CDD|224132 COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase
[Lipid metabolism].
Length = 230
Score = 31.0 bits (71), Expect = 2.0
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 13/56 (23%)
Query: 139 SNLWQI----------LLKAHERSSLMGCSIEPDPSVLEMQ--TPQGLVKGHAYSI 182
S LW L +A R+ G I D S +E LV+G A +
Sbjct: 157 SGLWAAQTPQAFRLELLKQALARAFAEGREITDDASAIEKAGGPVS-LVEGSADNF 211
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 27.2 bits (62), Expect = 2.4
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 648 MLDVDRSGKLGFEEFQQL 665
D + GK+ EE ++L
Sbjct: 7 QFDTNGDGKISKEELKRL 24
>gnl|CDD|177454 PHA02672, PHA02672, ORF110 EEV glycoprotein; Provisional.
Length = 166
Score = 29.5 bits (66), Expect = 4.3
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 11/56 (19%)
Query: 547 FFQKLAGDDMEVDWMELKDILDYAMRNETKTTTEGGFSKDVCRNV----PANTSTT 598
FF K A ++ W+ +KD+ T T + D+C ++ PA +T
Sbjct: 44 FFLKEACEN---GWVPIKDLCVLNTHVITNVTL----AHDICASMDGDPPATPNTM 92
>gnl|CDD|225829 COG3292, COG3292, Predicted periplasmic ligand-binding sensor
domain [Signal transduction mechanisms].
Length = 671
Score = 30.2 bits (68), Expect = 4.6
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 238 LTFDDDGEFWMSYKDFLKYFS--RLEICNLSPDSLIE--DAMSRDRGKKWEMSVYEGEWV 293
L FD +G W+ D L YF R + L+ L + +A+ D + + +G ++
Sbjct: 170 LVFDANGRLWVGTPDGLSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQGVYL 229
Query: 294 RGVTAGGSQEWRFIPDHEKRELG----LTFDDDGEFWM 327
A G WR G L D GE W+
Sbjct: 230 --QEAEG---WRASNWGPMLPSGNILLLVQDAQGELWI 262
>gnl|CDD|222725 pfam14386, DUF4417, Domain of unknown function (DUF4417). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 220 and
340 amino acids in length. There is a single completely
conserved residue G that may be functionally important.
Length = 200
Score = 28.8 bits (65), Expect = 9.5
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 269 SLIEDAMSRDRGKKWEMSVYEGEWVRGVTAG-GSQEWRFIPDHEKRELGLTF-DDDGEFW 326
L+E A K E+ + + + R +K L F DD +F
Sbjct: 1 PLLERAPLD---GKLEIPIIKPVETIPINELVPFNRARSKDTKDKLNAALHFYVDDYKFE 57
Query: 327 MSYKDFLKYFSRLEICN--LSPD-SLIEDA 353
+ D KY RL+ + LSPD SL +D
Sbjct: 58 RVWSDPEKYVERLKEFDGVLSPDFSLYDDM 87
>gnl|CDD|238974 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1
of OGDC-like subfamily, TPP-binding module; composed of
proteins similar to the E1 component of the
2-oxoglutarate dehydrogenase multienzyme complex (OGDC).
OGDC catalyzes the oxidative decarboxylation of
2-oxoglutarate to succinyl-CoA and carbon dioxide, a key
reaction of the tricarboxylic acid cycle.
Length = 265
Score = 28.6 bits (65), Expect = 9.9
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 627 LETKTTTEGGFSKDVCRSMVAMLD--VDRSGKLGFEEF 662
L TK + F + S++ LD +DR+ +LG EE
Sbjct: 5 LATKFPGQKRFGLEGAESLIPALDELIDRAAELGVEEV 42
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.423
Gapped
Lambda K H
0.267 0.0702 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 40,280,113
Number of extensions: 3986866
Number of successful extensions: 3328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3302
Number of HSP's successfully gapped: 50
Length of query: 766
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 662
Effective length of database: 6,324,786
Effective search space: 4187008332
Effective search space used: 4187008332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.1 bits)