RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14118
(766 letters)
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 382 bits (981), Expect = e-122
Identities = 167/488 (34%), Positives = 245/488 (50%), Gaps = 78/488 (15%)
Query: 283 WEMSVYEGEWVRGVTAGGSQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEIC 342
W + G+W W + + L +DGEFWMS+ DFL+++SRLEIC
Sbjct: 288 WGQVEWTGKWNDNCP-----SWNTVDPEVRANL-TERQEDGEFWMSFSDFLRHYSRLEIC 341
Query: 343 NLSPDSLIEDAMSRDRGKKWEMSVYEGEWVRGVTAGGCRNYLETFWCNPQFKITLTEVDE 402
NL+PD+ ++ D KKW+++ +G W RG TAGGCRNY TFW NPQ+ I L E DE
Sbjct: 342 NLTPDT-----LTCDSYKKWKLTKMDGNWRRGSTAGGCRNYPNTFWMNPQYLIKLEEEDE 396
Query: 403 NDEDG--KCTVIIGLMQKNRRAQKKTGAECLTIGFAVYQI--EDPDNVPTPLDLNFFKYN 458
+DEDG CT ++GL+QK+RR Q+K G + TIGF +Y++ E L NFF
Sbjct: 397 DDEDGERGCTFLVGLIQKHRRRQRKMGEDMHTIGFGIYEVPEELTGQTNIHLSKNFFLTT 456
Query: 459 ASCARAPSFINLREVSCRFKLPPGVYCIVPSTFEPNEEGEFILRVFSEHKNNMEENDEEV 518
+ R+ +FINLREV RFKLPPG Y +VPSTFEP++ G+F +RVFSE K + + D+E+
Sbjct: 457 RARERSDTFINLREVLNRFKLPPGEYVLVPSTFEPHKNGDFCIRVFSEKKADYQTVDDEI 516
Query: 519 GMGEIDNRIQIPDEPQPEKEKKTEAIRQFFQKLAGDDMEVDWMELKDILDYAMRNETKTT 578
+ D R+ F +LAG+D E+ E L +R
Sbjct: 517 EANIEEIEANEEDIGDG--------FRRLFAQLAGEDAEISAFE----LQTILRRVLAKR 564
Query: 579 TEGGFSKDVCRNVPANTSTTDSPATGIVGNLLALICGNACRDTPLGAALETKTTTEGGFS 638
+ GFS
Sbjct: 565 EDIKSD---------------------------------------------------GFS 573
Query: 639 KDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTS 698
+ C+ MV MLD D SGKLG +EF LW I+ ++ +++ D + SG ++ +E+R+AL
Sbjct: 574 IETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEE 633
Query: 699 AGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKARDPSSTNKATFTLEE 758
AG+ L + ++ R++ + I FD+F+ C VRL+ + +FK DP +T L
Sbjct: 634 AGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEILFKIFKQLDPENTGTIQLDLIS 693
Query: 759 WVENTLYS 766
W+ ++
Sbjct: 694 WLSFSVLG 701
Score = 275 bits (704), Expect = 6e-82
Identities = 123/241 (51%), Positives = 165/241 (68%), Gaps = 12/241 (4%)
Query: 63 YGRWVDVVIDDRLPTYYGKLVFLHSSTDNEFWSALLEKAYAKLHGSYEALKGGSTCEAME 122
YG WV+VV+DDRLPT G+L+F+HS+ +EFWSALLEKAYAK++G YEAL GG+T E E
Sbjct: 146 YGEWVEVVVDDRLPTKDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFE 205
Query: 123 DFTGGVSEMYELNEAPSNLWQILLKAHERSSLMGCSIEP-DPSVLEMQTPQGLVKGHAYS 181
DFTGG++E YEL + P NL++I+ KA E+ SL+GCSI+ + E T Q LVKGHAYS
Sbjct: 206 DFTGGIAEWYELRKPPPNLFKIIQKALEKGSLLGCSIDITSAADSEAVTYQKLVKGHAYS 265
Query: 182 ITRIKYVDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEWRFIPDHEKRELGLTFD 241
+T + V+ S LIR+RNPWG + EW G W+D W + + L
Sbjct: 266 VTGAEEVESS----GSLQKLIRIRNPWG-QVEWTGKWNDNCPSWNTVDPEVRANL-TERQ 319
Query: 242 DDGEFWMSYKDFLKYFSRLEICNLSPDSLIEDAMSRDRGKKWEMSVYEGEWVRGVTAGGS 301
+DGEFWMS+ DFL+++SRLEICNL+PD+ ++ D KKW+++ +G W RG TAGG
Sbjct: 320 EDGEFWMSFSDFLRHYSRLEICNLTPDT-----LTCDSYKKWKLTKMDGNWRRGSTAGGC 374
Query: 302 Q 302
+
Sbjct: 375 R 375
Score = 57.9 bits (139), Expect = 9e-09
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 3 EKGSGLRPRGRIGEVQDFAAIRDRCLSQGTLFEDPDFPCDDSSIFYSKMPPKS-----FE 57
+G G R QD+ +R+ CL G LF+DP FP SS+ + ++ P S E
Sbjct: 15 AEGLGSHERAIKYLNQDYETLRNECLEAGALFQDPSFPALPSSLGFKELGPYSSKTRGIE 74
Query: 58 WMRPM 62
W RP
Sbjct: 75 WKRPT 79
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 350 bits (898), Expect = e-108
Identities = 171/489 (34%), Positives = 253/489 (51%), Gaps = 78/489 (15%)
Query: 283 WEMSVYEGEWVRGVTAGGSQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEIC 342
W ++G W S EW + +E+ +L + +D GEFWMS++DF++ F++LEIC
Sbjct: 288 WGEVEWKGPWSDN-----SYEWNKVDPYEREQLRVKMED-GEFWMSFRDFIREFTKLEIC 341
Query: 343 NLSPDSLIEDAMSRDRGKKWEMSVYEGEWVRGVTAGGCRNYLETFWCNPQFKITLTEVDE 402
NL+PD+L + W + YEG W RG TAGGCRNY TFW NPQFKI L EVD+
Sbjct: 342 NLTPDALKSR-----TLRNWNTTFYEGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDD 396
Query: 403 NDE----DGKCTVIIGLMQKNRRAQKKTGAECLTIGFAVYQIE-DPDNVPTPLDLNFFKY 457
D+ + C+ ++ LMQK+RR +++ G + TIGFAVYQ+ + P L +FF
Sbjct: 397 ADDYDSRESGCSFLLALMQKHRRRERRFGRDMETIGFAVYQVPRELAGQPVHLKRDFFLA 456
Query: 458 NASCARAPSFINLREVSCRFKLPPGVYCIVPSTFEPNEEGEFILRVFSEHKNNMEENDEE 517
NAS A++ FINLREVS R +LPPG Y +VPSTFEPN+EG+F+LR FSE K +E D++
Sbjct: 457 NASRAQSEHFINLREVSNRIRLPPGEYIVVPSTFEPNKEGDFLLRFFSEKKAGTQELDDQ 516
Query: 518 VGMGEIDNRIQIPDEPQPEKEKKTEAIRQFFQKLAGDDMEVDWMELKDILDYAMRNETKT 577
+ D ++ +E + F KLAGDDME+ EL+ IL+ +
Sbjct: 517 IQANLPDEKVLSEEEIDDNF-------KTLFSKLAGDDMEISVKELQTILNRIISKHKDL 569
Query: 578 TTEGGFSKDVCRNVPANTSTTDSPATGIVGNLLALICGNACRDTPLGAALETKTTTEGGF 637
T GFS + CR++ D G +G
Sbjct: 570 RTN-GFSLESCRSMVN---LMDRDGNGKLG------------------------------ 595
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALT 697
EF LW IRN+ ++F+ +D + SG +S +E+R A+
Sbjct: 596 ---------------------LVEFNILWNRIRNYLTIFRKFDLDKSGSMSAYEMRMAIE 634
Query: 698 SAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKARDPSSTNKATFTLE 757
+AG+ L + ++ R++ + I FD+F+ C VRL+ + +FK DP +T L
Sbjct: 635 AAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEILFKIFKQLDPENTGTIQLDLI 694
Query: 758 EWVENTLYS 766
W+ ++
Sbjct: 695 SWLSFSVLG 703
Score = 286 bits (733), Expect = 2e-84
Identities = 136/248 (54%), Positives = 172/248 (69%), Gaps = 12/248 (4%)
Query: 56 FEWMRPMYGRWVDVVIDDRLPTYYGKLVFLHSSTDNEFWSALLEKAYAKLHGSYEALKGG 115
F + +G WVDVV+DD LPT GKLVF+HS+ NEFWSALLEKAYAK++GSYEAL GG
Sbjct: 139 FHFQLWQFGEWVDVVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGG 198
Query: 116 STCEAMEDFTGGVSEMYELNEAPSNLWQILLKAHERSSLMGCSIEP-DPSVLEMQTPQGL 174
T EA EDFTGGV+E Y+L +APS+L+QI+LKA ER SL+GCSI D LE T + L
Sbjct: 199 CTSEAFEDFTGGVTEWYDLQKAPSDLYQIILKALERGSLLGCSINISDIRDLEAITFKNL 258
Query: 175 VKGHAYSITRIKYVDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEWRFIPDHEKR 234
V+GHAYS+T K V ++ LIRMRNPWG E EW G WSD S EW + +E+
Sbjct: 259 VRGHAYSVTDAKQVT----YQGQRVNLIRMRNPWG-EVEWKGPWSDNSYEWNKVDPYERE 313
Query: 235 ELGLTFDDDGEFWMSYKDFLKYFSRLEICNLSPDSLIEDAMSRDRGKKWEMSVYEGEWVR 294
+L + +DGEFWMS++DF++ F++LEICNL+PD+L + W + YEG W R
Sbjct: 314 QLRVKM-EDGEFWMSFRDFIREFTKLEICNLTPDALKS-----RTLRNWNTTFYEGTWRR 367
Query: 295 GVTAGGSQ 302
G TAGG +
Sbjct: 368 GSTAGGCR 375
Score = 195 bits (496), Expect = 2e-52
Identities = 55/132 (41%), Positives = 85/132 (64%)
Query: 635 GGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQ 694
GF D CRSMVA++D D +GKLGFEEF+ LW +I+ W+ ++K ++ + SG + EL
Sbjct: 769 DGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQGIYKRFETDRSGTIGSNELPG 828
Query: 695 ALTSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKARDPSSTNKATF 754
A +AG+HLN HI +++ RYS + FD+F+ C VRL M F++ D + T +
Sbjct: 829 AFEAAGFHLNQHIYSMIIRRYSDETGNMDFDNFISCLVRLDAMFRAFRSLDKNGTGQIQV 888
Query: 755 TLEEWVENTLYS 766
++EW++ T+YS
Sbjct: 889 NIQEWLQLTMYS 900
Score = 52.1 bits (124), Expect = 7e-07
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 18 QDFAAIRDRCLSQGTLFEDPDFPCDDSSIFYSKMPPKSFEWMRPMYGRWVDVVIDDRL 75
QD+ +R+ CL G LF+DP FP S+ + ++ P S + + R +++ + +
Sbjct: 30 QDYETLRNECLEAGALFQDPAFPPVSHSLGFKELGPNSSKTYGIKWKRPTELLSNPQF 87
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine
proteinases, like, EF-hand, structural genomics,
structural genomics CON SGC; HET: AR7; 2.20A {Homo
sapiens}
Length = 326
Score = 256 bits (654), Expect = 5e-79
Identities = 125/231 (54%), Positives = 152/231 (65%), Gaps = 10/231 (4%)
Query: 39 FPCDDSSIFYSKMPPKSFEWMRPMYGRWVDVVIDDRLPTYYGKLVFLHSSTDNEFWSALL 98
P D + F++ + YG WV+VVIDDRLPT G+L+FLHS NEFWSALL
Sbjct: 105 VPRDQDFQ-ENYAGIFHFQFWQ--YGEWVEVVIDDRLPTKNGQLLFLHSEQGNEFWSALL 161
Query: 99 EKAYAKLHGSYEALKGGSTCEAMEDFTGGVSEMYELNEAPSNLWQILLKAHERSSLMGCS 158
EKAYAKL+G YEAL GGST E EDFTGG+SE Y+L + P+NL+QI+ KA SL+GCS
Sbjct: 162 EKAYAKLNGCYEALAGGSTVEGFEDFTGGISEFYDLKKPPANLYQIIRKALCAGSLLGCS 221
Query: 159 IEP-DPSVLEMQTPQGLVKGHAYSITRIKYVDISTPNTSGKIPLIRMRNPWGNEAEWNGA 217
I+ + E T Q LVK HAYS+T ++ V+ LIR+RNPWG E EW+GA
Sbjct: 222 IDVYSAAEAEAITSQKLVKSHAYSVTGVEEVNFQ----GHPEKLIRLRNPWG-EVEWSGA 276
Query: 218 WSDKSQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEICNLSPD 268
WSD + EW I K EL +DGEFWMS DF++ FSRLEICNLSPD
Sbjct: 277 WSDDAPEWNHIDPRRKEELDKKV-EDGEFWMSLSDFVRQFSRLEICNLSPD 326
Score = 73.5 bits (180), Expect = 3e-14
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 283 WEMSVYEGEWVRGVTAGGSQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEIC 342
W + G W + EW I K EL +D GEFWMS DF++ FSRLEIC
Sbjct: 268 WGEVEWSGAWSDD-----APEWNHIDPRRKEELDKKVED-GEFWMSLSDFVRQFSRLEIC 321
Query: 343 NLSPD 347
NLSPD
Sbjct: 322 NLSPD 326
Score = 60.8 bits (147), Expect = 5e-10
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 18 QDFAAIRDRCLSQGTLFEDPDFPCDDSSIFYSKMPP-----KSFEWMRP 61
QDF +R +CL G LF+DP+FP S++ Y + P + W RP
Sbjct: 10 QDFKTLRQQCLDSGVLFKDPEFPACPSALGYKDLGPGSPQTQGIIWKRP 58
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol
protease, structural genomics consortium, SGC,
hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB:
2p0r_A*
Length = 339
Score = 250 bits (638), Expect = 1e-76
Identities = 130/238 (54%), Positives = 164/238 (68%), Gaps = 9/238 (3%)
Query: 39 FPCDDSSIFYSKMPPKSFEWMRPMYGRWVDVVIDDRLPTYYGKLVFLHSSTDNEFWSALL 98
P D S F + + W+DVVIDDRLPT+ +LVFLHS+ NEFWSALL
Sbjct: 109 IPQDQSF---GPGYAGIFHFQFWQHSEWLDVVIDDRLPTFRDRLVFLHSADHNEFWSALL 165
Query: 99 EKAYAKLHGSYEALKGGSTCEAMEDFTGGVSEMYELNEAPSNLWQILLKAHERSSLMGCS 158
EKAYAKL+GSYEALKGGS EAMEDFTGGV+E ++ EAP N ++IL KA +R SL+GC
Sbjct: 166 EKAYAKLNGSYEALKGGSAIEAMEDFTGGVAETFQTKEAPENFYEILEKALKRGSLLGCF 225
Query: 159 IEPDPSV-LEMQTPQGLVKGHAYSITRIKYVDISTPNTSGKIPLIRMRNPWGNEAEWNGA 217
I+ + E +TP GL+KGHAYS+T I V +I LIR+RNPWG + EWNG+
Sbjct: 226 IDTRSAAESEARTPFGLIKGHAYSVTGIDQVSF----RGQRIELIRIRNPWG-QVEWNGS 280
Query: 218 WSDKSQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEICNLSPDSLIEDAM 275
WSD S EWR + E++ L T DDGEFWM++KDF +F ++EICNL+PD+L EDA+
Sbjct: 281 WSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAFKDFKAHFDKVEICNLTPDALEEDAI 338
Score = 75.6 bits (185), Expect = 8e-15
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 283 WEMSVYEGEWVRGVTAGGSQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEIC 342
W + G W S EWR + E++ L T DDGEFWM++KDF +F ++EIC
Sbjct: 272 WGQVEWNGSWSDS-----SPEWRSVGPAEQKRLCHTALDDGEFWMAFKDFKAHFDKVEIC 326
Query: 343 NLSPDSLIEDAM 354
NL+PD+L EDA+
Sbjct: 327 NLTPDALEEDAI 338
Score = 64.4 bits (156), Expect = 3e-11
Identities = 29/59 (49%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 3 EKGSGLRPRGRIGEVQDFAAIRDRCLSQGTLFEDPDFPCDDSSIFYSKMPPKSFEWMRP 61
SGL PRG F +R CL +GTLFED DFP +SS+FYS+ P F W RP
Sbjct: 9 HHSSGLVPRG-----SSFEQMRQECLQRGTLFEDADFPASNSSLFYSERPQIPFVWKRP 62
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor,
alpha-ketoamide, hydrolase, thiol protease; HET: K2Z;
1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A*
2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A
2ary_A 1zcm_A* 1mdw_A
Length = 339
Score = 235 bits (601), Expect = 2e-71
Identities = 123/208 (59%), Positives = 154/208 (74%), Gaps = 7/208 (3%)
Query: 62 MYGRWVDVVIDDRLPTYYGKLVFLHSSTDNEFWSALLEKAYAKLHGSYEALKGGSTCEAM 121
+G WVDVV+DD LPT GKLVF+HS+ NEFWSALLEKAYAK++GSYEAL GG T EA
Sbjct: 130 QFGEWVDVVVDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGGCTSEAF 189
Query: 122 EDFTGGVSEMYELNEAPSNLWQILLKAHERSSLMGCSIEP-DPSVLEMQTPQGLVKGHAY 180
EDFTGGV+E Y+L +APS+L+QI+LKA ER SL+GCSI D LE T + LV+GHAY
Sbjct: 190 EDFTGGVTEWYDLQKAPSDLYQIILKALERGSLLGCSINISDIRDLEAITFKNLVRGHAY 249
Query: 181 SITRIKYVDISTPNTSGKIPLIRMRNPWGNEAEWNGAWSDKSQEWRFIPDHEKRELGLTF 240
S+T K V ++ LIRMRNPWG E EW G WSD S EW + +E+ +L +
Sbjct: 250 SVTDAKQVTYQ----GQRVNLIRMRNPWG-EVEWKGPWSDNSYEWNKVDPYEREQLRVKM 304
Query: 241 DDDGEFWMSYKDFLKYFSRLEICNLSPD 268
+DGEFWMS++DF++ F++LEICNL+PD
Sbjct: 305 -EDGEFWMSFRDFIREFTKLEICNLTPD 331
Score = 64.8 bits (157), Expect = 3e-11
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 6/65 (9%)
Query: 283 WEMSVYEGEWVRGVTAGGSQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEIC 342
W ++G W S EW + +E+ +L + +D GEFWMS++DF++ F++LEIC
Sbjct: 273 WGEVEWKGPWSDN-----SYEWNKVDPYEREQLRVKMED-GEFWMSFRDFIREFTKLEIC 326
Query: 343 NLSPD 347
NL+PD
Sbjct: 327 NLTPD 331
Score = 57.8 bits (139), Expect = 5e-09
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 18 QDFAAIRDRCLSQGTLFEDPDFPCDDSSIFYSKMPPKS-----FEWMRPM 62
QD+ +R RCL G LF+D FP S+ + ++ P S +W RP
Sbjct: 15 QDYENLRARCLQNGVLFQDDAFPPVSHSLGFKELGPNSSKTYGIKWKRPT 64
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 180 bits (458), Expect = 6e-53
Identities = 68/225 (30%), Positives = 102/225 (45%), Gaps = 55/225 (24%)
Query: 542 EAIRQFFQKLAGDDMEVDWMELKDILDYAMRNETKTTTEGGFSKDVCRNVPANTSTTDSP 601
R+ F +LAGDDMEV EL + + +
Sbjct: 4 RQFRRLFAQLAGDDMEVSATELMN----ILNKVVTRHPDLKTD----------------- 42
Query: 602 ATGIVGNLLALICGNACRDTPLGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEE 661
GF D CRSMVA++D D +GKLGFEE
Sbjct: 43 ----------------------------------GFGIDTCRSMVAVMDSDTTGKLGFEE 68
Query: 662 FQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDAR 721
F+ LW +I+ W++++K +D + SG + EL A +AG+HLN H+ +++ RYS
Sbjct: 69 FKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYSDEGGN 128
Query: 722 ISFDDFMMCAVRLKTMIDLFKARDPSSTNKATFTLEEWVENTLYS 766
+ FD+F+ C VRL M FK+ D T + ++EW++ T+YS
Sbjct: 129 MDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS 173
Score = 35.1 bits (81), Expect = 0.035
Identities = 12/91 (13%), Positives = 34/91 (37%), Gaps = 16/91 (17%)
Query: 667 KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNN------------HILNILAHR 714
+++R ++ +F ++ +S EL L + ++ ++
Sbjct: 1 EEVRQFRRLFAQLAGDD-MEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSD 59
Query: 715 YSGRDARISFDDFMMCAVRLKTMIDLFKARD 745
+G ++ F++F +K ++K D
Sbjct: 60 TTG---KLGFEEFKYLWNNIKKWQAIYKQFD 87
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 170 bits (433), Expect = 1e-49
Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 623 LGAALET--KTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYD 680
L L T FS + CR M+AMLD D +GK+GF F++LW + WK F D
Sbjct: 21 LQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVD 80
Query: 681 QENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDL 740
Q+ SG + ELRQA+ GY L+ L + RYS ++ RI FDD++ C V+L+ + D
Sbjct: 81 QDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYS-KNGRIFFDDYVACCVKLRALTDF 139
Query: 741 FKARDPSSTNKATFTLEEWVENTLY 765
F+ RD A F +++++ T+
Sbjct: 140 FRKRDHLQQGSANFIYDDFLQGTMA 164
Score = 35.4 bits (82), Expect = 0.024
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 8/80 (10%)
Query: 674 SVFKMYDQ--ENSGYLSPFELRQALTSAGYHLNNHILNILAHRY------SGRDARISFD 725
SV+ + G + EL++ LT +G + ++ R ++ F+
Sbjct: 1 SVYTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFN 60
Query: 726 DFMMCAVRLKTMIDLFKARD 745
F L + F D
Sbjct: 61 AFKELWAALNAWKENFMTVD 80
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 171 bits (434), Expect = 2e-49
Identities = 49/145 (33%), Positives = 83/145 (57%), Gaps = 3/145 (2%)
Query: 623 LGAALET--KTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYD 680
L L F+ + CR MV+MLD D SG +GF EF++LW + W+ F +D
Sbjct: 54 LQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFD 113
Query: 681 QENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDL 740
+ SG + P EL++ALT+ G+ L+ +N +A RYS + +I+FDD++ C V+L+ + D
Sbjct: 114 TDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYS-TNGKITFDDYIACCVKLRALTDS 172
Query: 741 FKARDPSSTNKATFTLEEWVENTLY 765
F+ RD + F +++++ +
Sbjct: 173 FRRRDTAQQGVVNFPYDDFIQCVMS 197
Score = 34.4 bits (79), Expect = 0.076
Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 7/80 (8%)
Query: 672 WKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY------SGRDARISFD 725
F G + EL++ LT +G N+ R + F+
Sbjct: 35 LYGYFAA-VAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFN 93
Query: 726 DFMMCAVRLKTMIDLFKARD 745
+F L F + D
Sbjct: 94 EFKELWAVLNGWRQHFISFD 113
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 168 bits (429), Expect = 7e-49
Identities = 44/144 (30%), Positives = 77/144 (53%), Gaps = 3/144 (2%)
Query: 623 LGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQE 682
L AL T T F+ RS+++M D + + F EF +WK I +W++VF+ YD++
Sbjct: 29 LQQALSNGTWT--PFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRD 86
Query: 683 NSGYLSPFELRQALTSAGYHLNNHILNILAHRYSG-RDARISFDDFMMCAVRLKTMIDLF 741
NSG + EL+QAL+ GY L++ +IL ++ +I+FDDF+ + L+ + D+F
Sbjct: 87 NSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIF 146
Query: 742 KARDPSSTNKATFTLEEWVENTLY 765
+ D + E+++
Sbjct: 147 RRYDTDQDGWIQVSYEQYLSMVFS 170
Score = 41.1 bits (97), Expect = 4e-04
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 658 GFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGY-HLNNHILNILAHRY- 715
+ LW +VF+ D++ SG +S EL+QAL++ + N + + +
Sbjct: 2 ALPDQSFLW-------NVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFD 54
Query: 716 SGRDARISFDDFMMCAVRLKTMIDLFKARD 745
A ++F +F + ++F+ D
Sbjct: 55 RENKAGVNFSEFTGVWKYITDWQNVFRTYD 84
Score = 39.9 bits (94), Expect = 0.001
Identities = 29/170 (17%), Positives = 56/170 (32%), Gaps = 41/170 (24%)
Query: 542 EAIRQFFQKLAGDDME-VDWMELKDILDYAMRNETKTTTEGGFSKDVCRNVPANTSTTDS 600
+ FQ++ D + EL+ A+ N T T F+ R++ S D
Sbjct: 7 SFLWNVFQRVDKDRSGVISDTELQQ----ALSNGTWT----PFNPVTVRSI---ISMFDR 55
Query: 601 PATGIVG-----NLLALICGNACRD---------------TPLGAALETKTTTEGGF--S 638
V + I ++ L AL + G+ S
Sbjct: 56 ENKAGVNFSEFTGVWKYI--TDWQNVFRTYDRDNSGMIDKNELKQAL-----SGFGYRLS 108
Query: 639 KDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLS 688
++ D G++ F++F Q ++ +F+ YD + G++
Sbjct: 109 DQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQ 158
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 168 bits (428), Expect = 7e-49
Identities = 50/145 (34%), Positives = 83/145 (57%), Gaps = 3/145 (2%)
Query: 623 LGAALET--KTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYD 680
L L F+ + CR MV+MLD D SG +GF EF++LW + W+ F +D
Sbjct: 23 LQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFD 82
Query: 681 QENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDL 740
+ SG + P EL++ALT+ G+ LN +N +A RYS +I+FDD++ C V+L+ + D
Sbjct: 83 SDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYS-TSGKITFDDYIACCVKLRALTDS 141
Query: 741 FKARDPSSTNKATFTLEEWVENTLY 765
F+ RD + F+ +++++ +
Sbjct: 142 FRRRDSAQQGMVNFSYDDFIQCVMT 166
Score = 33.5 bits (77), Expect = 0.11
Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 7/79 (8%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY------SGRDARISFDD 726
F G + EL++ LT +G N+ R + F++
Sbjct: 5 YGYFASVA-GQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNE 63
Query: 727 FMMCAVRLKTMIDLFKARD 745
F L F + D
Sbjct: 64 FKELWAVLNGWRQHFISFD 82
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 162 bits (411), Expect = 8e-46
Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 8/148 (5%)
Query: 623 LGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQE 682
L S M+ + D D +G + F EF ++K + ++F M +
Sbjct: 73 LMMGQFPGGI---RLSPQTALRMMRIFDTDFNGHISFYEFMAMYKFMELAYNLFVMNARA 129
Query: 683 NSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFK 742
SG L P E+ AL G+++N +L ++ A + ++ ++
Sbjct: 130 RSGTLEPHEILPALQQLGFYINQRTSLLLHRLFARGMAFCDLNCWIAICAFAAQTRSAYQ 189
Query: 743 ARDPSSTNK-----ATFTLEEWVENTLY 765
+ ++++
Sbjct: 190 MIFMNPYYGPMKPFNPMEFGKFLDVVTS 217
Score = 47.5 bits (113), Expect = 4e-06
Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 657 LGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY- 715
+ +++ ++++ F D++ SG L EL G L+ + +
Sbjct: 45 IPLDQYTRIYQ-------WFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFD 97
Query: 716 SGRDARISFDDFMMCAVRLKTMIDLFKARD 745
+ + ISF +FM ++ +LF
Sbjct: 98 TDFNGHISFYEFMAMYKFMELAYNLFVMNA 127
>2qfe_A Calpain-7; C2-like domain, hydrolase, nuclear protein, protease,
thiol protease; 1.45A {Homo sapiens}
Length = 148
Score = 158 bits (400), Expect = 3e-45
Identities = 40/188 (21%), Positives = 69/188 (36%), Gaps = 43/188 (22%)
Query: 327 MSYKDFLKYFSRLEICNLSPDSLIEDAMSRDRGKKWEMSVYEGEWVRGVTAGGCRNYLET 386
M + S + SP +L + G+W G +AGGC N+ ET
Sbjct: 1 MGSSHHHHHHSSGLVPRGSPYTLSKR--------------INGKW-SGQSAGGCGNFQET 45
Query: 387 FWCNPQFKITLTEVDENDEDGKCTVIIGLMQKNRRAQKKTGAECLTIGFAVYQIEDPDNV 446
NP ++ + + ++I L G ++GF V + +
Sbjct: 46 HKNNPIYQFHIEK--------TGPLLIELR----------GPRQYSVGFEVVTVSTLGD- 86
Query: 447 PTPLDLNFFKYNASCARAPS-FINLREVSCRFKLPPGVYCIVPSTFEPNEEGEFILRVFS 505
P F + ++ R ++ L +P G++ I+PSTF P +EG F L S
Sbjct: 87 --PGPHGFLRKSSGDYRCGFCYLELEN------IPSGIFNIIPSTFLPKQEGPFFLDFNS 138
Query: 506 EHKNNMEE 513
+ +
Sbjct: 139 IIPIKITQ 146
Score = 43.3 bits (102), Expect = 5e-05
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 15/58 (25%)
Query: 248 MSYKDFLKYFSRLEICNLSPDSLIEDAMSRDRGKKWEMSVYEGEWVRGVTAGGSQEWR 305
M + S + SP +L + G+W G +AGG ++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSPYTLSKR--------------INGKW-SGQSAGGCGNFQ 43
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 152 bits (387), Expect = 8e-43
Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 4/144 (2%)
Query: 623 LGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQE 682
L AAL + FS ++ M D + SG++ F+EF+ L I + + F+ D
Sbjct: 49 LNAALSSAGVP---FSLATTEKLLHMYDKNHSGEITFDEFKDLHHFILSMREGFRKRDSS 105
Query: 683 NSGYLSPFELRQALTSAGYHLNNHILNILAHRYS-GRDARISFDDFMMCAVRLKTMIDLF 741
G L E+R AL S+GY ++ L ++ R + FDD++ ++ + + ++F
Sbjct: 106 GDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSIFVCRVRNVF 165
Query: 742 KARDPSSTNKATFTLEEWVENTLY 765
D T + TFT + ++ ++
Sbjct: 166 AFYDRERTGQVTFTFDTFIGGSVS 189
Score = 46.1 bits (110), Expect = 8e-06
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 668 DIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY-SGRDARISFDD 726
D + F+ D + SG +S EL AL+SAG + L H Y I+FD+
Sbjct: 25 DNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDE 84
Query: 727 FMMCAVRLKTMIDLFKARD 745
F + +M + F+ RD
Sbjct: 85 FKDLHHFILSMREGFRKRD 103
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 147 bits (372), Expect = 4e-41
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 9/151 (5%)
Query: 623 LGAALET---KTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMY 679
L L FS D CRS+VA++++ +G+L EEF +LWK + +++ VF+
Sbjct: 26 LQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQEEFARLWKRLVHYQHVFQKV 85
Query: 680 DQENSGYLSPFELRQALTSA----GYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLK 735
+ G L +L +A+ + G ++ +L+++ RYS R+SF + +RL+
Sbjct: 86 Q-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYSDSVGRVSFPSLVCFLMRLE 144
Query: 736 TMIDLFKARDPSSTNKATFTLEEWVENTLYS 766
M F+ T EW+ +Y+
Sbjct: 145 AMAKTFRNLSKDGKG-LYLTEMEWMSLVMYN 174
Score = 31.4 bits (71), Expect = 0.67
Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 8/100 (8%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGY-HLNNHILN------ILAHRYSGRDARISFD 725
+ +L+ L + + ++A + R+ +
Sbjct: 8 HHHSSGLVPR-GSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQE 66
Query: 726 DFMMCAVRLKTMIDLFKARDPSSTNKATFTLEEWVENTLY 765
+F RL +F+ S + L + +ENT +
Sbjct: 67 EFARLWKRLVHYQHVFQKVQTSPGVLLSSDLWKAIENTDF 106
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 81.8 bits (202), Expect = 6e-17
Identities = 16/109 (14%), Positives = 42/109 (38%)
Query: 637 FSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQAL 696
+ + + M++ D G++ + + D+ + F+ D ++G LS E R+
Sbjct: 155 IPEGPLKKLFVMVENDTKGRMSYITLVAVANDLAALVADFRKIDTNSNGTLSRKEFREHF 214
Query: 697 TSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKARD 745
G+ + + + + F +++ + L + L+ D
Sbjct: 215 VRLGFDKKSVQDALFRYADEDESDDVGFSEYVHLGLCLLVLRILYAFAD 263
Score = 69.1 bits (169), Expect = 1e-12
Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 3/104 (2%)
Query: 635 GGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQ 694
G K V ++ D D S +GF E+ L + + ++ D + SG LS E+++
Sbjct: 218 GFDKKSVQDALFRYADEDESDDVGFSEYVHLGLCLLVLRILYAFADFDKSGQLSKEEVQK 277
Query: 695 ALTSAGYHLNN--HILNILAHRYSGRDARISFDDFM-MCAVRLK 735
L A + + + +S+ +F+ + +
Sbjct: 278 VLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFVMLVLLMFH 321
Score = 55.6 bits (134), Expect = 2e-08
Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 3/105 (2%)
Query: 644 SMVAMLDVDRSGKLGFEEFQQLW--KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGY 701
S++ L+ D SG + + +D + +F SG S +L+Q L
Sbjct: 94 SLLKDLEDDASGYNRLRPSKPMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYAD 153
Query: 702 HLN-NHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKARD 745
+ + + + R+S+ + A L ++ F+ D
Sbjct: 154 TIPEGPLKKLFVMVENDTKGRMSYITLVAVANDLAALVADFRKID 198
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.3 bits (166), Expect = 7e-12
Identities = 95/625 (15%), Positives = 170/625 (27%), Gaps = 184/625 (29%)
Query: 242 DDGEFWMSYKD----FLKYFSRLEICNLSPDSLIE--------------DAMSRDRGKKW 283
+ GE YKD F F C D DA+S W
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 284 EMSVYEGEWV-RGVTAGGSQEWRFIPDHEKRELGLTFDDDGEFWMSYKD--------FLK 334
+ + E V + V ++F+ K E + + +D F K
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY-IEQRDRLYNDNQVFAK 128
Query: 335 YF-SRLEICNLSPDSLIEDAMSRDRGKKWEMSVY----EGEWVRGVTAGGCRNY------ 383
Y SRL+ P + A+ R K + + G+ V C +Y
Sbjct: 129 YNVSRLQ-----PYLKLRQALLELRPAKN-VLIDGVLGSGKTW--VALDVCLSYKVQCKM 180
Query: 384 -LETFWCNPQFKITLTEVDENDE--------------------DGKCTVIIGL----MQK 418
+ FW + L + + D + + + +
Sbjct: 181 DFKIFW------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 419 NRRAQKKTGAECLTIGFAVYQIEDPDNVPTPLDLNFFKYNASCARAPSFINLREVSCRFK 478
R + K CL + NV N F N SC + R
Sbjct: 235 RRLLKSKPYENCLLV---------LLNVQNAKAWNAF--NLSC---KILLTTRFKQVTDF 280
Query: 479 LPPGVYCIVPS-----TFEPNEEGEFILRVFSEHKNNMEEND--EE--------VGM-GE 522
L + T P+E +L+ + D E + + E
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYL-----DCRPQDLPREVLTTNPRRLSIIAE 335
Query: 523 -IDNRIQIPDE-PQPEKEKKTEAIRQFFQKLAGDDMEVDWMELKDILDYAMRNETKTTTE 580
I + + D +K T I L + + L ++
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL------SV--------- 380
Query: 581 GGFSKDVCRNVPANTSTTDSPATGIVGNLLALICGNACRDTP--LGAALETKTTTEGGFS 638
F ++P L+LI + + + L + E
Sbjct: 381 --FPPSA--HIPTIL--------------LSLIWFDVIKSDVMVVVNKLHKYSLVE---- 418
Query: 639 KDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTS 698
K S +++ + K+ E L + I + ++ K +D ++ L P L
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD---LIPPYLD----- 470
Query: 699 AGY---HLNNHILNILAHRYSGRDARISFD-DFMMCAVR------------LKTMIDLFK 742
Y H+ +H+ NI + D F+ +R L T+ L
Sbjct: 471 -QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 743 ARDPSSTNKATF-----TLEEWVEN 762
+ N + + +++
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPK 554
Score = 48.3 bits (114), Expect = 9e-06
Identities = 81/597 (13%), Positives = 158/597 (26%), Gaps = 187/597 (31%)
Query: 47 FYSKMPPKSFEWMRPMYGRWVDVVIDDRLPT--YYGKLVFLHSSTDNEFWS--------- 95
F ++ +++++ + T Y + L+ DN+ ++
Sbjct: 82 FVEEVLRINYKFL---MSPIKTEQRQPSMMTRMYIEQRDRLY--NDNQVFAKYNVSRLQP 136
Query: 96 ------ALLE---KAYAKLHGSYEALKG-GSTCEAMEDFTGGVSEMYELNEAPSN--LWQ 143
ALLE + G + G G T A++ V Y++ W
Sbjct: 137 YLKLRQALLELRPAKNVLIDG----VLGSGKTWVALD-----VCLSYKVQCKMDFKIFW- 186
Query: 144 ILLKAHERSSLMGCSIEPDPSVLEMQTPQGLVKGHAYSITRIKYVDISTPNTSGKIPLIR 203
L + P+ +VLEM Q L + +I S + S I L
Sbjct: 187 --LN-------LKNCNSPE-TVLEML--QKL-------LYQIDPNWTSRSDHSSNIKL-- 225
Query: 204 MRNPWGNEAEWNGAWSDKSQEWRFIPDHEKRELGLTFDD--DGEFWMSYKDFLKYFSRLE 261
+ + + L L + + + W F
Sbjct: 226 ------RIHSIQAELRRLLKSKPY-----ENCL-LVLLNVQNAKAW-------NAF---- 262
Query: 262 ICNLSPDSLIEDAMSRDRGKKWEMSVYEGEWVRGVTAGGSQEWRFIPDHEKRELGLTFDD 321
NLS L+ +R + VT S + + LT D+
Sbjct: 263 --NLSCKILL---TTRFKQ---------------VTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 322 DGEFWMSYKDFLKYFS------RLEICNLSPD--SLIEDAMSRDRGKKWEMSVYEGEWVR 373
LKY E+ +P S+I RD W+ +
Sbjct: 303 VKSL------LLKYLDCRPQDLPREVLTTNPRRLSIIA-ESIRDGLATWDNWKHVNCDKL 355
Query: 374 GVTAGGCRNYLETFWCNPQF----------KITL-------TEVDENDEDGKCTVIIGLM 416
N LE F I +V ++D V+ L
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM---VVVNKLH 412
Query: 417 QK---NRRAQKKTGAECLTIGFAVYQIEDPDNVPTPLDLNFFKYNASCARAP----SFIN 469
+ ++ ++ T I + + + S ++
Sbjct: 413 KYSLVEKQPKEST-----------ISI---------PSI-YLELKVKLENEYALHRSIVD 451
Query: 470 LREVSCRFKLPPGVYCIVPSTFEPNEEGEFILRVFSEHKNNMEENDEEVGMGE------- 522
+ +P + P ++ H N+E + E + +
Sbjct: 452 ------HYNIPKT-FD--SDDLIPPYLDQYFYSHIGHHLKNIE-HPERMTLFRMVFLDFR 501
Query: 523 -IDNRIQIPDEPQPEKEKKTEAIRQF--FQKLAGDDMEVDWMELKDILDYAMRNETK 576
++ +I+ ++Q ++ D+ + ILD+ + E
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 60.9 bits (148), Expect = 8e-10
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 649 LDVDRSGKLGFEEF-------QQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGY 701
D DR+G + + EF + L + +S F+ +DQ+ +G +S EL
Sbjct: 399 ADFDRNGYIDYSEFVTVAMDRKSLLSKDK-LESAFQKFDQDGNGKISVDELASVFGLDHL 457
Query: 702 HLNNHILNILAHRYSGRDARISFDDF--MM 729
+ +++ S D + F++F M+
Sbjct: 458 E-SKTWKEMISGIDSNNDGDVDFEEFCKMI 486
Score = 40.1 bits (94), Expect = 0.003
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 667 KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNH---------ILNILAHRYSG 717
++ + +F+ D+ G L EL + + IL
Sbjct: 343 EETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFD 402
Query: 718 RDARISFDDFMMCAVRLKTMIDLFKAR 744
R+ I + +F+ A+ K+++ K
Sbjct: 403 RNGYIDYSEFVTVAMDRKSLLSKDKLE 429
Score = 29.3 bits (66), Expect = 5.1
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEFQQLWK----DIRNWKSVFKMYDQENSGYLS 688
SKD S D D +GK+ +E ++ + + WK + D N G +
Sbjct: 424 SKDKLESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVD 478
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 60.1 bits (146), Expect = 2e-09
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 649 LDVDRSGKLGFEEF-------QQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGY 701
LD+D SG + + EF L R + FKM+D++ SG +S EL + + A
Sbjct: 390 LDMDGSGSIEYSEFIASAIDRTILLSRER-MERAFKMFDKDGSGKISTKELFKLFSQADS 448
Query: 702 HLN-NHILNILAHRYSGRDARISFDDF--MM 729
+ + +I+ + +D + F++F M+
Sbjct: 449 SIQMEELESIIEQVDNNKDGEVDFNEFVEML 479
Score = 36.6 bits (85), Expect = 0.028
Identities = 11/93 (11%), Positives = 29/93 (31%), Gaps = 15/93 (16%)
Query: 667 KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDAR----- 721
+ + +F+ D N G L EL + +++ + S + +
Sbjct: 328 DETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLM 387
Query: 722 ----------ISFDDFMMCAVRLKTMIDLFKAR 744
I + +F+ A+ ++ +
Sbjct: 388 PLLDMDGSGSIEYSEFIASAIDRTILLSRERME 420
Score = 29.7 bits (67), Expect = 4.6
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEFQQLWK------DIRNWKSVFKMYDQENSGYLS 688
S++ M D D SGK+ +E +L+ + +S+ + D G +
Sbjct: 415 SRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVD 471
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 59.7 bits (145), Expect = 2e-09
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 649 LDVDRSGKLGFEEF-------QQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGY 701
+D D++G + + EF + L R + F+M+D +NSG +S EL +
Sbjct: 391 VDFDKNGYIEYSEFVTVAMDRKTLLSRER-LERAFRMFDSDNSGKISSTELATIFGVSDV 449
Query: 702 HLNNHILNILAHRYSGRDARISFDDF--MM 729
+ ++L+ D + FD+F M+
Sbjct: 450 D-SETWKSVLSEVDKNNDGEVDFDEFQQML 478
Score = 35.8 bits (83), Expect = 0.050
Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 12/90 (13%)
Query: 667 KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNH------------ILNILAHR 714
+ + ++F D+ G L EL + + +L
Sbjct: 332 DETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAV 391
Query: 715 YSGRDARISFDDFMMCAVRLKTMIDLFKAR 744
++ I + +F+ A+ KT++ +
Sbjct: 392 DFDKNGYIEYSEFVTVAMDRKTLLSRERLE 421
Score = 30.0 bits (68), Expect = 2.8
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEFQQLWK----DIRNWKSVFKMYDQENSGYLS 688
S++ M D D SGK+ E ++ D WKSV D+ N G +
Sbjct: 416 SRERLERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVD 470
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 59.3 bits (144), Expect = 2e-09
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 649 LDVDRSGKLGFEEF-------QQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGY 701
+D D++G + + EF Q L+ + R + F ++D + SG ++ EL
Sbjct: 408 VDFDKNGYIEYSEFISVCMDKQILFSEER-LRRAFNLFDTDKSGKITKEELANLFGLTSI 466
Query: 702 HLNNHILNILAHRYSGRDARISFDDF--MM 729
++L +D I FD+F MM
Sbjct: 467 S-EKTWNDVLGEADQNKDNMIDFDEFVSMM 495
Score = 37.4 bits (87), Expect = 0.017
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 667 KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNH---------ILNILAHRYSG 717
++ + +FK D+ G L EL + N + NIL
Sbjct: 352 EERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFD 411
Query: 718 RDARISFDDFMMCAVRLKTMIDLFKAR 744
++ I + +F+ + + + + R
Sbjct: 412 KNGYIEYSEFISVCMDKQILFSEERLR 438
Score = 30.8 bits (70), Expect = 2.0
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 634 EGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKS 674
S+ ++ D ++ + F+EF + I + K+
Sbjct: 463 LTSISEKTWNDVLGEADQNKDNMIDFDEFVSMMHKICDHKT 503
Score = 30.1 bits (68), Expect = 3.6
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 637 FSKDVCRSMVAMLDVDRSGKLGFEEFQQLWK----DIRNWKSVFKMYDQENSGYLS 688
FS++ R + D D+SGK+ EE L+ + W V DQ +
Sbjct: 432 FSEERLRRAFNLFDTDKSGKITKEELANLFGLTSISEKTWNDVLGEADQNKDNMID 487
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 56.4 bits (136), Expect = 7e-09
Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 26/130 (20%)
Query: 626 ALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNW------------- 672
L G ++ V GK+G E + N+
Sbjct: 44 ELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCE 103
Query: 673 --KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY---------SGRDAR 721
++ YD ++SG++ EL+ L N + + Y S D +
Sbjct: 104 EFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGK 163
Query: 722 ISFDDF--MM 729
+ + ++
Sbjct: 164 LELTEMARLL 173
Score = 52.6 bits (126), Expect = 1e-07
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 20/109 (18%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLWKDIRN--------------WKSVFKMYDQENSGYL 687
M+ + D + GKL E +L N + F++YDQ+ +GY+
Sbjct: 149 TDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYI 208
Query: 688 SPFELRQALTSAGYHLNNHILNILAHRYSGR------DARISFDDFMMC 730
EL L + Y ++ D +
Sbjct: 209 DENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDLALI 257
Score = 36.0 bits (83), Expect = 0.033
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 7/83 (8%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLN-------NHILNILAHRYSGRDARISFD 725
++ +D + SGYL EL+ + + + D +I
Sbjct: 19 FEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIV 78
Query: 726 DFMMCAVRLKTMIDLFKARDPSS 748
+ + + LF+ + S
Sbjct: 79 ELAHVLPTEENFLLLFRCQQLKS 101
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 55.1 bits (133), Expect = 7e-09
Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 20/131 (15%)
Query: 639 KDVCRSMVAMLDVDRSGKLGFEEFQQLWKD-------------IRNWKSVFKMYDQENSG 685
+ + L + ++ EE D + ++ D + G
Sbjct: 58 RQEFLRVADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDG 117
Query: 686 YLSPFELRQALTSAGYHLNNHILN-ILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKAR 744
Y+S E + L + G L + ++ +IS D+F L T+ D
Sbjct: 118 YVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEF------LVTVNDFLFGL 171
Query: 745 DPSSTNKATFT 755
+ ++ A +
Sbjct: 172 EETALANAFYG 182
Score = 37.0 bits (86), Expect = 0.010
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKD 668
+ D + LD +++G++ +EF D
Sbjct: 134 DLTDDKAITCFNTLDFNKNGQISRDEFLVTVND 166
Score = 33.2 bits (76), Expect = 0.19
Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 10/75 (13%)
Query: 669 IRNWKSVFKMYDQENSGYLSPFELRQALTSAGY----------HLNNHILNILAHRYSGR 718
+R K+ + D G++S + L +
Sbjct: 13 LRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAP 72
Query: 719 DARISFDDFMMCAVR 733
RIS ++ + A
Sbjct: 73 GVRISVEEAAVNATD 87
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 54.6 bits (132), Expect = 1e-08
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 16/109 (14%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEF-----QQLWKDIRNWKSVFKMYDQENSGYLSPF 690
G K ++ LD++ G + + EF + + K+ F D++ GY+S
Sbjct: 69 GIKKWDINRILQALDINDRGNITYTEFMAGCYRWKNIESTFLKAAFNKIDKDEDGYISKS 128
Query: 691 ELRQALTSAGYHLNNHILNILA--------HRYSGRDARISFDDF--MM 729
++ + NN I N +ISF +F M
Sbjct: 129 DIVSLVHDKVLD-NNDIDNFFLSVHSIKKGIPREHIINKISFQEFKDYM 176
Score = 37.7 bits (88), Expect = 0.006
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 667 KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDD 726
I+ +F D ++G LS E+ L S G I IL I++ +
Sbjct: 36 NHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIK-KWDINRILQALDINDRGNITYTE 94
Query: 727 FMMCAVRLKTM 737
FM R K +
Sbjct: 95 FMAGCYRWKNI 105
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 53.7 bits (130), Expect = 1e-08
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLW----KDIRNWKS------VFKMYDQENSGYLSPFEL 692
+++ +D D SG + FEEF + K+ KS F+++D+ G++ EL
Sbjct: 59 DAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEEL 118
Query: 693 RQALTSAGYHLNN-HILNILAHRYSGRDARISFDDF--MMCAVR 733
+ L + G H+ I +++ D RI FD+F MM V+
Sbjct: 119 GEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGVQ 162
Score = 32.9 bits (76), Expect = 0.17
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNH-ILNILAHRYSGRDARISFDDF--MM 729
K+ F M+D + G +S EL + G + + I+ I F++F MM
Sbjct: 23 KAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMM 82
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 3e-08
Identities = 93/621 (14%), Positives = 162/621 (26%), Gaps = 262/621 (42%)
Query: 77 TYYGKLVFLHSSTDNEFWSALLEKAYAKLHGSYEALKGGSTCEAMEDFTGGVSEMY--EL 134
Y + D + SAL A+ GG G ++ Y EL
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLV-AIFGGQ----------GNTDDYFEEL 173
Query: 135 NEAPSNLWQI---LLKAH-ERSSLMGCSIEPDPSVLEMQTPQGLVKGHAYSITRIKYVDI 190
+ L+Q L+ + S+ + E QGL +I
Sbjct: 174 RD----LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL--------------NI 215
Query: 191 --------STPNT--------SGKIPLIRMRNPWGNEAEWNGAWSDKSQEWRFIPDHEKR 234
+TP+ S PLI
Sbjct: 216 LEWLENPSNTPDKDYLLSIPIS--CPLI-------------------------------- 241
Query: 235 ELGLTFDDDGEFWMSYKDFLKYFSRLEICNLSPDSLIEDAMSRDRGKKWEMSVYEGEWVR 294
G+ Y ++ +P L S +G + + +
Sbjct: 242 --GVI------------QLAHYVVTAKLLGFTPGEL----RSYLKG-----ATGHSQGL- 277
Query: 295 GVTA---GGSQEWR-FIPDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEICNLSPDSLI 350
VTA + W F +T F++ + + + + P S++
Sbjct: 278 -VTAVAIAETDSWESF---FVSVRKAITV----LFFIGVR-CYEAYPNTSL----PPSIL 324
Query: 351 EDAMSRDRGKKWEMSVYEGEWVRGVTAGGCRNYLETF--WCN---PQFK---ITLTEVDE 402
ED++ + G M + +T + ++ + N P K I+L
Sbjct: 325 EDSLENNEGVPSPMLS-----ISNLT----QEQVQDYVNKTNSHLPAGKQVEISLV---- 371
Query: 403 NDEDG-KCTVIIG----LMQKNRRAQK-KTGAECLTIGFAVYQIEDPDNVPTPLDLNFFK 456
N G K V+ G L N +K K + D +P F +
Sbjct: 372 N---GAKNLVVSGPPQSLYGLNLTLRKAKAPSGL-----------DQSRIP------FSE 411
Query: 457 YNASCARAPSFINLREVSCRFKLPPGVYCIVPSTFEPNEEGEFILRVFSEHKNNMEENDE 516
R F N RF LP P F H + +
Sbjct: 412 ------RKLKFSN------RF-LP---------VASP-----F-------HSHLLV---- 433
Query: 517 EVGMGEIDNRIQIPDEPQPEKEKKTEAIRQFFQKLAGDDMEVDWMELK----DILDYA-M 571
A + L +++ + +++ D D + +
Sbjct: 434 -------------------------PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468
Query: 572 RNETKTTTEGGFSKDVCR---NVPAN-TSTTDSPATGIV----------GNLLALIC-GN 616
R + + +E + +P +TT AT I+ G L G
Sbjct: 469 RVLSGSISE-----RIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523
Query: 617 ACRDTPLGAALETKTTTEGGF 637
R + L+ + GF
Sbjct: 524 GVR-VIVAGTLDINPDDDYGF 543
Score = 43.9 bits (103), Expect = 2e-04
Identities = 48/289 (16%), Positives = 83/289 (28%), Gaps = 129/289 (44%)
Query: 517 EVGMGEIDNRIQIPDEPQPEKEKKTEAIRQFFQKLAGDDMEVDWMEL-------KDILDY 569
E GMG M+L +D+ +
Sbjct: 1628 EQGMG---------------------------------------MDLYKTSKAAQDVWNR 1648
Query: 570 AMRNETKTTTEGGFS-KDVCRNVPANTSTTDSPATG--IVGNLLALICGNACRDTPLGAA 626
A + GFS D+ N P N + G I N A+I +T +
Sbjct: 1649 A---DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF-----ETIVDGK 1700
Query: 627 LETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQ---------LWKDIRNW----- 672
L+T+ F K++ + G L +F Q ++D+++
Sbjct: 1701 LKTEKI----F-KEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPA 1755
Query: 673 KSVFKMYDQENSG-----YLSPFELRQALTS-AGYHLNNHILNI------LAHRYSG--- 717
+ F +G Y + AL S A +++I + +R G
Sbjct: 1756 DATF-------AGHSLGEY-A------ALASLAD------VMSIESLVEVVFYR--GMTM 1793
Query: 718 -----RDARISFDDFMMCAVRLKTMIDLFKARDPSSTNKATFTLEEWVE 761
RD + ++ M A+ + F L+ VE
Sbjct: 1794 QVAVPRDE-LGRSNYGMIAINPGRVAASFSQEA----------LQYVVE 1831
Score = 35.0 bits (80), Expect = 0.11
Identities = 51/333 (15%), Positives = 98/333 (29%), Gaps = 79/333 (23%)
Query: 458 NASCARAPSFINLREVSCRFKLPPGVYCIVPSTFEPNEEGEFILRVFSEHKNNMEENDEE 517
+A R P ++ + +P + I E +F ++ E +DE
Sbjct: 2 DAYSTR-PLTLSHGSLEHVLLVPTASFFIASQLQE-----QF-NKILPEPTEGFAADDEP 54
Query: 518 VGMGEIDNRIQ--IPDEPQPEKEKKTEAIRQFFQKLAGDDMEVDWMELKDILDYAMRNET 575
E+ + + +P K + + + L + E ++E DI A +
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQV----LNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 576 KTTTEGGFSKDVCRNVPANTSTTDSPATGIVGNLL--ALICGNACRDTPL-------GAA 626
+ T +K++ +N P + L A+ GNA L G
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA----QLVAIFGGQGNT 166
Query: 627 ------LETKTTTEGGFSKDVCRSMVAML--------DVDRSGKLGFEEFQQLWKDIRNW 672
L T D+ + L D ++ G +I W
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL--------NILEW 218
Query: 673 KSVFKMYDQENSGYLS------PF-ELRQ------ALTSAGYH---LNNHILNILAHRYS 716
+ + + YL P + Q G+ L +++ H
Sbjct: 219 --LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH--- 273
Query: 717 GRD---ARI-----SFDDFMMCAVRLKTMIDLF 741
+ A S++ F + + T+ LF
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITV--LF 304
Score = 34.3 bits (78), Expect = 0.18
Identities = 47/277 (16%), Positives = 81/277 (29%), Gaps = 100/277 (36%)
Query: 234 RELGLTFDD-DGEFWMSYKDFLKYFSRLEICNLSPDSLIEDAMSRDRGKKWEMSVYEGEW 292
+++ ++ D F +Y FS L+I +P +L ++GK+ + Y
Sbjct: 1643 QDV---WNRADNHFKDTYG-----FSILDIVINNPVNLTI-HFGGEKGKRIREN-YSAMI 1692
Query: 293 VRGVTAGGSQEWRFIPDHEKRELGLTFDDDGE------------FWMSYKDFLKYFSRLE 340
+ G + + + + TF + M F L+
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK----AAFEDLK 1748
Query: 341 ICNLSPD-------SL--------------IEDAMS--RDRGKKWEMSVYEGEWVR---G 374
L P SL IE + RG +++V E R G
Sbjct: 1749 SKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG 1808
Query: 375 VTAGGCRNYLETFWCNPQFKITLTEVDENDEDGKCTVIIGLMQKNRRAQKKTGAECLTIG 434
+ A NP ++ + E + ++ R K+TG
Sbjct: 1809 MIA-----------INPG-RVAASFSQEALQY-----VV------ERVGKRTGWLV---- 1841
Query: 435 FAVYQIEDPDNVPTP----------LD-----LNFFK 456
+I + NV LD LNF K
Sbjct: 1842 ----EIVN-YNVENQQYVAAGDLRALDTVTNVLNFIK 1873
Score = 31.2 bits (70), Expect = 1.7
Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 53/145 (36%)
Query: 431 LTIGFAVYQIEDPDNVPTPLDLNFFKYNASCARAPSFINLREVSCRFK--LPPGVYCIVP 488
L+ G +E VPT FF AS L+E +F LP P
Sbjct: 11 LSHG----SLEHVLLVPTAS---FF--IAS--------QLQE---QFNKILPE------P 44
Query: 489 STF-----EPNEEGEFILRVFSEHKNNMEENDEEVGMGEI--------------DNRI-- 527
+ EP E + + F + +++ E + ++ N I
Sbjct: 45 TEGFAADDEPTTPAELVGK-FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 528 ---QIPDEPQPEKEKKTEAIRQFFQ 549
++ E K E I+ +
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYIT 128
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 53.7 bits (129), Expect = 3e-08
Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 10/104 (9%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQL---WKDIRNW---KSVFKMYDQENSGYLSPFELRQAL 696
+S ++ G F EF + I ++ +F D + + E ++A+
Sbjct: 97 KSRTLGSKLENKGSEDFVEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAV 156
Query: 697 TSAGYHLNNH--ILNILAHRYSGRDARISFDDF--MMCAVRLKT 736
+ ++FD+F AV+L
Sbjct: 157 PKLEAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWASAVKLDA 200
Score = 31.0 bits (70), Expect = 1.1
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 14/91 (15%)
Query: 667 KDIRNWKSVFKMYDQENSGYLSPFELRQALTSA-GYHLNNHILN------ILAHRYSGRD 719
+ + +FK +D+ +G L E+ + R G
Sbjct: 45 EAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSK 104
Query: 720 A----RISFDDFMMCAVRLKTMID---LFKA 743
F +F+ + L + D L
Sbjct: 105 LENKGSEDFVEFLEFRLMLCYIYDFFELTVM 135
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 52.6 bits (127), Expect = 3e-08
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 13/103 (12%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQL----------WKDIRNWKSVFKMYDQENSGYLSPFEL 692
+ M+ +D D SG + F+EF + K +F+M+D+ GY+ EL
Sbjct: 58 QEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEEL 117
Query: 693 RQALTSAGYHLNN-HILNILAHRYSGRDARISFDDF--MMCAV 732
+ L + G + I ++ D RI +D+F M V
Sbjct: 118 KIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGV 160
Score = 28.3 bits (64), Expect = 6.2
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 673 KSVFKMYDQ-ENSGYLSPFELRQALTSAGYHLNNH-ILNILAHRYSGRDARISFDDF--M 728
K+ F ++ G +S EL + + G + + ++ + FD+F M
Sbjct: 21 KAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVM 80
Query: 729 M 729
M
Sbjct: 81 M 81
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 51.1 bits (123), Expect = 4e-08
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 647 AMLDVDRSGKLGFEEFQQL----WKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYH 702
A+ + + ++ F K + K F + DQ+ SG++ EL+ L
Sbjct: 15 ALKACEAADSFNYKAFFAKVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAG 74
Query: 703 LNN----HILNILAHRYSGRDARISFDDF--MM 729
L S D I D++ ++
Sbjct: 75 ARALTDAETKAFLKAGDSDGDGAIGVDEWAALV 107
Score = 31.5 bits (72), Expect = 0.23
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 623 LGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
L L+ + + ++ + D D G +G +E+ L
Sbjct: 64 LKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAAL 106
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 51.8 bits (125), Expect = 4e-08
Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 14/98 (14%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKS---------VFKMYDQENSGYLSPFELR 693
+ + +D D +G++ EF + + I+ ++K+ D + G L+ E+
Sbjct: 39 QLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVT 98
Query: 694 QALTSAGYHLNNHILNILAHRYSGRDARISFDDF--MM 729
G + + + D I+ ++F
Sbjct: 99 SFFKKHGI---EKVAEQVMKADANGDGYITLEEFLEFS 133
Score = 31.7 bits (73), Expect = 0.28
Identities = 12/73 (16%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY----SGRDARISFDDF- 727
+++FK D G +S E++ ++ N +L ++ +G I ++F
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNG---EIDQNEFA 59
Query: 728 -MMCAVRLKTMID 739
+++ + + D
Sbjct: 60 KFYGSIQGQDLSD 72
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 52.6 bits (127), Expect = 4e-08
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLW----------KDIRNWKSVFKMYDQENSGYLSPFEL 692
+ M++ +D D SG + FEEF + ++I F+++D +NSG ++ +L
Sbjct: 67 KKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILK---AFRLFDDDNSGTITIKDL 123
Query: 693 RQALTSAGYHLNN-HILNILAHRYSGRDARISFDDF--MM 729
R+ G +L + ++A D I D+F +M
Sbjct: 124 RRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIM 163
Score = 34.5 bits (80), Expect = 0.057
Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNH-ILNILAHRYSGRDARISFDDFM-MC 730
+ F ++D + SG + EL+ A+ + G+ I +++ I F++F+ M
Sbjct: 31 REAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMM 90
Query: 731 AVRLK 735
++
Sbjct: 91 TAKMG 95
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 51.7 bits (125), Expect = 4e-08
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 15/99 (15%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLW----------KDIRNWKSVFKMYDQENSGYLSPFEL 692
M D +GK+ F EF + +R F+ +D E +GY+ L
Sbjct: 45 NEMFNEADATGNGKIQFPEFLSMMGRRMKQTTSEDILRQ---AFRTFDPEGTGYIPKAAL 101
Query: 693 RQALTSAGYHLNNHILNILAHRYSGRDARISFDDF--MM 729
+ AL + G L H +I +D+F M
Sbjct: 102 QDALLNLGDRLKPHEFAEFLGITETEKGQIRYDNFINTM 140
Score = 32.5 bits (75), Expect = 0.19
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNH-ILNILAHRYSGRDARISFDDFM-MC 730
K F+++D E +G+++ L+ L G + + + + +I F +F+ M
Sbjct: 9 KEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMM 68
Query: 731 AVRLK 735
R+K
Sbjct: 69 GRRMK 73
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 52.9 bits (127), Expect = 5e-08
Identities = 15/125 (12%), Positives = 36/125 (28%), Gaps = 22/125 (17%)
Query: 639 KDVCRSMVAMLDVDRSGKLGFEEFQQLW----------KDIRNW-----KSVFKMYDQEN 683
K + + D + ++ EE+ ++W + + W +F + D
Sbjct: 63 KLIWDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSG 122
Query: 684 SGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKA 743
+ E S G + G ++ + F + + F +
Sbjct: 123 DNIIDKHEYSTVYMSYGIP-KSDCDAAFDTLSDGGKTMVTREIF------ARLWTEYFVS 175
Query: 744 RDPSS 748
D +
Sbjct: 176 NDRGA 180
Score = 37.5 bits (87), Expect = 0.006
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKD 668
G K C + L + E F +LW +
Sbjct: 139 GIPKSDCDAAFDTLSDGGKTMVTREIFARLWTE 171
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 52.6 bits (127), Expect = 6e-08
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKS------VFKMYDQENSGYLSPFELRQAL 696
+ ++ D+D+SG + + EF + + F +D++ SGY++ E++QA
Sbjct: 49 KDLMDAADIDKSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQAC 108
Query: 697 TSAGYHLNNHILNILAHRYSGRDARISFDDF--MM 729
G + HI +++ D +I + +F MM
Sbjct: 109 KDFGLD-DIHIDDMIKEIDQDNDGQIDYGEFAAMM 142
Score = 35.7 bits (83), Expect = 0.030
Identities = 9/75 (12%), Positives = 24/75 (32%), Gaps = 14/75 (18%)
Query: 633 TEGGFSKDVCRSMVAMLDVDRSGKLGFEEF--------------QQLWKDIRNWKSVFKM 678
+ G M+ +D D G++ + EF ++ + N + +
Sbjct: 109 KDFGLDDIHIDDMIKEIDQDNDGQIDYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGL 168
Query: 679 YDQENSGYLSPFELR 693
D ++ + +
Sbjct: 169 VDNGSNQVIEGYFKH 183
Score = 34.5 bits (80), Expect = 0.071
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY----SGRDARISFDDFM 728
K +FKM D +NSG ++ EL+ L G L + L SG I + +F+
Sbjct: 13 KELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSG---TIDYGEFI 69
Query: 729 MCAVRLK 735
V L
Sbjct: 70 AATVHLN 76
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 51.3 bits (124), Expect = 6e-08
Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 16/100 (16%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQL----------WKDIRNWKSVFKMYDQENSGYLSPFEL 692
+ M++ +D + +GK+ F +F + ++I FK++D + +G +S L
Sbjct: 45 KKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILK---AFKLFDDDETGKISFKNL 101
Query: 693 RQALTSAGYHLNN-HILNILAHRYSGRDARISFDDF--MM 729
++ G +L + + ++ D +S +F +M
Sbjct: 102 KRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIM 141
Score = 34.0 bits (79), Expect = 0.056
Identities = 11/68 (16%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY----SGRDARISFDDFM 728
+ F ++D + +G + EL+ A+ + G+ + + +G +++F DF+
Sbjct: 9 REAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTG---KMNFGDFL 65
Query: 729 -MCAVRLK 735
+ ++
Sbjct: 66 TVMTQKMS 73
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 51.8 bits (125), Expect = 7e-08
Identities = 14/100 (14%), Positives = 40/100 (40%), Gaps = 16/100 (16%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLW----------KDIRNWKSVFKMYDQENSGYLSPFEL 692
++ D + + +++F + +I+ F+++D +++G +S L
Sbjct: 62 LDLIDEYDSEGRHLMKYDDFYIVMGEKILKRDPLDEIKR---AFQLFDDDHTGKISIKNL 118
Query: 693 RQALTSAGYHLNN-HILNILAHRYSGRDARISFDDF--MM 729
R+ G L + + ++ D I+ ++F +
Sbjct: 119 RRVAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAIC 158
Score = 34.8 bits (81), Expect = 0.044
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNH-ILNILAHRYSGRDARISFDDFM-MC 730
F ++D N G+L EL+ A+ + G+ L IL+++ S + +DDF +
Sbjct: 26 YEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVM 85
Query: 731 AVRLK 735
++
Sbjct: 86 GEKIL 90
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 51.3 bits (124), Expect = 7e-08
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQL-WKDIRNWKS------VFKMYDQENSGYLSPFELRQA 695
++ +DVD + + F EF L + ++ S FK++D+ G +S EL+
Sbjct: 50 ADLMNEIDVDGNHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHV 109
Query: 696 LTSAGYHLNNHILNILAHRYSGRDARISFDDF--MM 729
LTS G L + ++ + S I+ F ++
Sbjct: 110 LTSIGEKLTDAEVDEMLREVSDGSGEINIKQFAALL 145
Score = 34.4 bits (80), Expect = 0.052
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNH-ILNILAHRYSGRDARISFDDF--MM 729
K F ++D++NSG +S EL + S G + + +++ + I F +F +M
Sbjct: 14 KEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALM 73
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 51.3 bits (124), Expect = 8e-08
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 16/100 (16%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLW----------KDIRNWKSVFKMYDQENSGYLSPFEL 692
+ M+ +D D +G + F EF L +++ FK++D++ +G +S EL
Sbjct: 49 QDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIE---AFKVFDRDGNGLISAAEL 105
Query: 693 RQALTSAGYHLNN-HILNILAHRYSGRDARISFDDF--MM 729
R +T+ G L + + ++ D I++++F MM
Sbjct: 106 RHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMM 145
Score = 34.4 bits (80), Expect = 0.048
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNH-ILNILAHRYSGRDARISFDDF--MM 729
K F ++D++ G ++ EL + S G + + +++ + + I F +F +M
Sbjct: 13 KEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLM 72
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 51.4 bits (124), Expect = 8e-08
Identities = 18/101 (17%), Positives = 43/101 (42%), Gaps = 14/101 (13%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKS-----------VFKMYDQENSGYLSPFE 691
R ++ D +G + F+ F+ + + F++YD+E +GY+S
Sbjct: 53 RQLIDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDV 112
Query: 692 LRQALTSAGYHLNN-HILNILAHRYSGRDARISFDDF--MM 729
+R+ L L++ + ++ + + F++F +M
Sbjct: 113 MREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMGVM 153
Score = 29.8 bits (68), Expect = 1.7
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 673 KSVFKMYD-QENSGYLSPFELRQALTSAGYHLNNHILNILAHRY----SGRDARISFDDF 727
++ F+ ++ E SG +S ++ L G + L + +G I FD F
Sbjct: 16 ETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNG---DIDFDSF 72
Query: 728 MMCAVRLKTMIDLFKARDP 746
+ + + +
Sbjct: 73 --KIIGARFLGEEVNPEQM 89
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 51.8 bits (125), Expect = 9e-08
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 16/100 (16%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLW----------KDIRNWKSVFKMYDQENSGYLSPFEL 692
+ M+ +D D +G + F EF + ++IR F+++D++ +GY+S EL
Sbjct: 50 QDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIRE---AFRVFDKDGNGYISAAEL 106
Query: 693 RQALTSAGYHLNN-HILNILAHRYSGRDARISFDDF--MM 729
R +T+ G L + + ++ D ++++++F MM
Sbjct: 107 RHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
Score = 34.0 bits (79), Expect = 0.096
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNH-ILNILAHRYSGRDARISFDDF--MM 729
K F ++D++ G ++ EL + S G + + +++ + + I F +F MM
Sbjct: 14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMM 73
Score = 31.0 bits (71), Expect = 0.81
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 16/65 (24%)
Query: 637 FSKDVCRSMVAMLDVDRSGKLGFEEFQQL-------------WKDIRNWKSVFKMYDQEN 683
+ + M+ D+D G++ +EEF Q+ + IRN + +
Sbjct: 117 LTDEEVDEMIREADIDGDGQVNYEEFVQMMTAKGGGGGAAARKEVIRN---KIRAIGKMA 173
Query: 684 SGYLS 688
+
Sbjct: 174 RVFSV 178
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 51.9 bits (125), Expect = 1e-07
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 13/100 (13%)
Query: 643 RSMVAMLDVDRSGKLGFEEF----QQLWKDIRNW-KSVFKMYDQENSGYLSPFELRQALT 697
++ +D D SGK+ + EF + + F+++D +N G ++ EL L
Sbjct: 90 DLLLDQIDSDGSGKIDYTEFIAAALDRKQLSKKLIYCAFRVFDVDNDGEITTAELAHILY 149
Query: 698 SAGYHLN------NHILNILAHRYSGRDARISFDDF--MM 729
+ N N + ++ D +I F +F MM
Sbjct: 150 NGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEMM 189
Score = 40.3 bits (95), Expect = 7e-04
Identities = 17/71 (23%), Positives = 34/71 (47%)
Query: 667 KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDD 726
D+ KS F + D++ GY++ +L++ L G L + +L S +I + +
Sbjct: 49 YDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLPYNFDLLLDQIDSDGSGKIDYTE 108
Query: 727 FMMCAVRLKTM 737
F+ A+ K +
Sbjct: 109 FIAAALDRKQL 119
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 51.4 bits (124), Expect = 1e-07
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKS------VFKMYDQENSGYLSPFELRQAL 696
++ DVD SG + ++EF + + F +D++ SGY++P EL+QA
Sbjct: 66 LDLMQAADVDNSGTIDYKEFIAATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQAC 125
Query: 697 TSAGYHLNNHILNILAHRYSGRDARISFDDF--MM 729
G + I ++ D RI +++F MM
Sbjct: 126 EEFGVE-DVRIEELMRDVDQDNDGRIDYNEFVAMM 159
Score = 34.8 bits (81), Expect = 0.042
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLN-NHILNILAHRYSGRDARISFDDFMMCA 731
K +F M D + SG ++ EL+ L G +L + IL+++ I + +F+
Sbjct: 30 KEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAAT 89
Query: 732 VRLKTM 737
+ L +
Sbjct: 90 LHLNKI 95
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 50.7 bits (122), Expect = 1e-07
Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 13/103 (12%)
Query: 643 RSMVAMLDVDR--SGKLGFEEFQQLWKDIRNWKS---------VFKMYDQENSGYLSPFE 691
++ D S ++ FE F + + + + F+++D+E +G + E
Sbjct: 49 LKVLGNPKSDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAE 108
Query: 692 LRQALTSAGYHLNNHILNILAHRYSGRDARISFDDF--MMCAV 732
LR LT+ G + + + + + I+++ F + +V
Sbjct: 109 LRHVLTTLGEKMTEEEVETVLAGHEDSNGCINYEAFLKHILSV 151
Score = 31.8 bits (73), Expect = 0.32
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNH-ILNILAHRYSGRDA--RISFDDFMM 729
K F+++D+ G + + + + G + N +L +L + S R+ F+ F+
Sbjct: 13 KEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLP 72
Query: 730 CAVRLKTMID 739
+
Sbjct: 73 MLQAVAKNRG 82
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 50.2 bits (121), Expect = 2e-07
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 645 MVAMLDVDRSGKLGFEEFQQLWKDIRNWKS--------VFKMYDQENSGYLSPFELRQAL 696
V L FEEF ++ + + + FK +D+E G++S ELR L
Sbjct: 51 AVGGTHKMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVL 110
Query: 697 TSAGYHLNNHILNIL---AHRYSGRDARISFDDF--MMCA 731
T+ G L++ ++ + + + ++DF + A
Sbjct: 111 TALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMA 150
Score = 31.4 bits (72), Expect = 0.49
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 673 KSVFKMYDQ--ENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDF--M 728
K VF+++D G + F+L G + N + + + + + F++F
Sbjct: 12 KDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEEFLPA 71
Query: 729 M 729
Sbjct: 72 Y 72
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 49.9 bits (120), Expect = 2e-07
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 15/100 (15%)
Query: 645 MVAMLDVDRSGKLGFEEFQQLWKDIRNWKS-------VFKMYDQENSGYLSPFELRQALT 697
++ + D D +G++ F+EF + F++YD + GY+S EL Q L
Sbjct: 43 VIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLK 102
Query: 698 S-AGYHLNNHILNILAHRY-----SGRDARISFDDF--MM 729
G +L + L + + D RISF++F ++
Sbjct: 103 MMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVV 142
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 49.5 bits (118), Expect = 3e-07
Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 9/128 (7%)
Query: 627 LETKTTTEGGFSKDVCRS-MVAMLDVDRSGKLGFEEFQQ---LWKDIRNWKSVFKMYDQE 682
+ +GG + + ++ L+ L ++ L + +K + +D
Sbjct: 1 MSQSRDLQGGKAFGLLKAQQEERLEGINKQFLDDPKYSNDEDLPSKLEAFKVKYMEFDLN 60
Query: 683 NSGYLSPFELRQALTSAGYHLNNH-ILNILAHRYSGRDARISFDDF--MMCAVR--LKTM 737
+G + L++ L G + + ++ SG + S+ DF MM R + M
Sbjct: 61 GNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRMMLGKRSAILRM 120
Query: 738 IDLFKARD 745
I +++ ++
Sbjct: 121 ILMYEEKN 128
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 49.5 bits (119), Expect = 3e-07
Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQL-----------WKDIRNWKSVFKMYDQENSGYLSPFE 691
+ ++++ G + F++F +L ++ + F+ +D G +S E
Sbjct: 50 IELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSE 109
Query: 692 LRQALTSA-GYHLNN-HILNILAHRYSGRDARISFDDF--MM 729
LR+A+ + G+ + + I I+ D R+ F++F MM
Sbjct: 110 LREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMM 151
Score = 32.5 bits (75), Expect = 0.19
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNH-ILNILAHRYSGRDARISFDDF--MM 729
+ F+ +D++ GY++ +L + + GY ++ + + FDDF +M
Sbjct: 14 REAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELM 73
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 48.3 bits (116), Expect = 4e-07
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Query: 647 AMLDVDRSGKLGFEEFQQL----WKDIRNWKSVFKMYDQENSGYLSPFELRQALTS---A 699
A+ V G ++F L + K VFK D + SG++ EL+ L S
Sbjct: 15 ALDAVKAEGSFNHKKFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAAD 74
Query: 700 GYHLN-NHILNILAHRYSGRDARISFDDF--MM 729
G L L D +I D+F ++
Sbjct: 75 GRDLTDAETKAFLKAADKDGDGKIGIDEFETLV 107
Score = 28.3 bits (64), Expect = 3.0
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 623 LGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
L L++ + ++ + D D GK+G +EF+ L
Sbjct: 64 LKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETL 106
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 50.0 bits (120), Expect = 5e-07
Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 14/105 (13%)
Query: 643 RSMVAMLDVDRSGKLGFEEF------QQLWKDIRNWKSVFKMYDQENSGYLSPFELRQAL 696
++ +D DR+G + + EF +QL + F+ +D + SG ++ EL +
Sbjct: 90 DHILQSVDFDRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLF 149
Query: 697 TSAGYHLNNHILNILAHRYSGRDARISFDDF--MMCAVRLKTMID 739
+ +L D + F++F MM + + D
Sbjct: 150 GVTEVD-DETWHQVLQECDKNNDGEVDFEEFVEMM-----QKICD 188
Score = 29.6 bits (67), Expect = 2.5
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 633 TEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWK 673
+ ++ D + G++ FEEF ++ + I + K
Sbjct: 150 GVTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQKICDVK 190
Score = 28.4 bits (64), Expect = 6.7
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 673 KSVFKMYDQENSGYLSPFELRQAL 696
+F+ D G L EL +
Sbjct: 43 TQIFRQLDNNGDGQLDRKELIEGY 66
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 47.6 bits (114), Expect = 6e-07
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 10/93 (10%)
Query: 647 AMLDVDRSGKLGFEEFQQLW----KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYH 702
A+ + +EF K + + K F + DQ+ SG++ EL+ L +
Sbjct: 14 ALAACSAADSFKHKEFFAKVGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPS 73
Query: 703 LNN----HILNILAHRYSGRDARISFDDF--MM 729
LA D I D+F M+
Sbjct: 74 ARALTDAETKAFLADGDKDGDGMIGVDEFAAMI 106
Score = 31.4 bits (72), Expect = 0.25
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 623 LGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
L L+ + + + ++ +A D D G +G +EF +
Sbjct: 63 LKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAM 105
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 47.3 bits (113), Expect = 7e-07
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 10/93 (10%)
Query: 647 AMLDVDRSGKLGFEEFQQL----WKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYH 702
A+ + ++ F K K VF + DQ+ SG++ EL+ L +
Sbjct: 15 ALSSCQAADSFNYKSFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSS 74
Query: 703 LNN----HILNILAHRYSGRDARISFDDF--MM 729
LA + D +I ++F ++
Sbjct: 75 ARVLTSAETKAFLAAGDTDGDGKIGVEEFQSLV 107
Score = 31.8 bits (73), Expect = 0.18
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 623 LGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWK 667
L L+ +++ + ++ +A D D GK+G EEFQ L K
Sbjct: 64 LQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSLVK 108
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 49.1 bits (118), Expect = 8e-07
Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 643 RSMVAMLDVDRSGKLGFEEF------QQLWKDIRNWKSVFKMYDQENSGYLSPFELRQAL 696
++ +D + SG++ + +F +Q + FK +D + +G +S EL++
Sbjct: 96 HQVLRDIDSNASGQIHYTDFLAATIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIF 155
Query: 697 TSAGYHLN---NHILNILAHRYSGRDARISFDDF--MM 729
I ++L D I F +F MM
Sbjct: 156 GRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLMM 193
Score = 38.0 bits (89), Expect = 0.005
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 667 KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNH-ILNILAHRYSGRDARISFD 725
+I N +++F D +NSG LS E+ L GY I +L S +I +
Sbjct: 54 VEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYT 113
Query: 726 DFMMCAVRLKTMID---LFKA 743
DF+ + +T +
Sbjct: 114 DFLAATIDKQTYLKKEVCLIP 134
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 48.4 bits (116), Expect = 8e-07
Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 21/109 (19%)
Query: 639 KDVCRSMVAMLDVDRSGKLGFEEFQQL---------------WKDIRNWKSVFKMYDQEN 683
+ V + A + + L ++ L +D F+++D+E+
Sbjct: 40 QLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVK---AFQVFDKES 96
Query: 684 SGYLSPFELRQALTSAGYHLNNH-ILNILAHRYSGRDARISFDDF--MM 729
+G +S +LR LT G L + + +L + I + F +
Sbjct: 97 TGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDV 145
Score = 34.1 bits (79), Expect = 0.056
Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 669 IRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILN--ILAHRYSGRDARISFDD 726
R K +F ++D++ G ++ L L + GY+ N ++ I A + ++ D
Sbjct: 3 TRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQ 62
Query: 727 F--MM 729
++
Sbjct: 63 ITGLI 67
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 50.1 bits (119), Expect = 9e-07
Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 26/132 (19%)
Query: 623 LGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLW---------------- 666
+ L+ K + + +S ++ D G+L EE +
Sbjct: 40 MLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAP 99
Query: 667 -KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY---------S 716
+ + +++ YD ++SGY+S EL+ L I Y
Sbjct: 100 LDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDK 159
Query: 717 GRDARISFDDFM 728
+D R+ +D
Sbjct: 160 NKDGRLDLNDLA 171
Score = 47.0 bits (111), Expect = 9e-06
Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 27/120 (22%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEFQQLWK------------------DIRNWKSVFKMY 679
+ +M+ + D ++ G+L + ++ R+++ +F Y
Sbjct: 146 LDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHY 205
Query: 680 DQENSGYLSPFELRQALTSAGYHLNNHI---------LNILAHRYSGRDARISFDDFMMC 730
D +G L E+ + + I +L H +D +I + +C
Sbjct: 206 DVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALC 265
Score = 32.3 bits (73), Expect = 0.50
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 11/72 (15%)
Query: 668 DIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLN----------NHILNILAHRY-S 716
D + +++ +D +++GY+ EL L I Y +
Sbjct: 9 DAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDA 68
Query: 717 GRDARISFDDFM 728
D R+ ++
Sbjct: 69 TFDGRLQIEELA 80
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 48.3 bits (116), Expect = 1e-06
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 16/100 (16%)
Query: 648 MLDVDR--SGKLGFEEFQQLWKDIRNWKS---------VFKMYDQENSGYLSPFELRQAL 696
+ EE +++++ + + FK +D+E G +S E+R L
Sbjct: 52 HGGTKKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVL 111
Query: 697 TSAGYHLNNHILNIL---AHRYSGRDARISFDDF--MMCA 731
G + N + D I ++D + A
Sbjct: 112 KMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMA 151
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 48.6 bits (116), Expect = 1e-06
Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 17/103 (16%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLWKDIRN--------------WKSVFKMYDQENSGYLS 688
+ V G L E+F ++ +++ K + M D+ G ++
Sbjct: 61 DYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQIN 120
Query: 689 PFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDF--MM 729
E LT+ G + + +S D+ +
Sbjct: 121 ADEFAAWLTALGMS-KAEAAEAFNQVDTNGNGELSLDELLTAV 162
Score = 37.4 bits (87), Expect = 0.006
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKD 668
G SK +D + +G+L +E +D
Sbjct: 132 GMSKAEAAEAFNQVDTNGNGELSLDELLTAVRD 164
Score = 30.5 bits (69), Expect = 1.4
Identities = 11/87 (12%), Positives = 24/87 (27%), Gaps = 16/87 (18%)
Query: 669 IRNWKSVFKMYDQENSGYLSPFELRQAL----TSAGYHLNNHILNILAHRYSGR------ 718
K F +D + +G L + + + G + L + + G
Sbjct: 6 SDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAK 65
Query: 719 ------DARISFDDFMMCAVRLKTMID 739
D ++ + F+ L
Sbjct: 66 EAGVGSDGSLTEEQFIRVTENLIFEQG 92
Score = 27.8 bits (62), Expect = 8.7
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 639 KDVCRSMVAMLDVDRSGKLGFEEFQQLWKDI----RNWKSVFKMYDQENSGYLSPFELRQ 694
V + +V M D + G++ +EF + F D +G LS EL
Sbjct: 101 GPVVKGIVGMCDKNADGQINADEFAAWLTALGMSKAEAAEAFNQVDTNGNGELSLDELLT 160
Query: 695 AL 696
A+
Sbjct: 161 AV 162
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 48.9 bits (117), Expect = 1e-06
Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 17/109 (15%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKS------VFKMYDQENSGYLSPFE 691
+ + D + SG L EEF + + + F D+ G ++ +
Sbjct: 71 DQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDD 130
Query: 692 LRQALTSAGYHLNN--------HILNILAH-RYSGRDARISFDDF--MM 729
LR + + + L + S +D +++ +F
Sbjct: 131 LRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDYY 179
Score = 35.0 bits (81), Expect = 0.045
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 14/77 (18%)
Query: 656 KLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY 715
G Q L F+ D++ S L E RQ L G L+ + ++
Sbjct: 30 SRGASGIQGL-------ARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKW 82
Query: 716 ----SGRDARISFDDFM 728
SG + ++F+
Sbjct: 83 DRNGSG---TLDLEEFL 96
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 50.7 bits (121), Expect = 1e-06
Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 20/102 (19%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLW----------KDIRNWKSVFKMYDQENSGYLSPFEL 692
+ M+ +D D +G + F EF + ++IR F+++D++ +GY+S EL
Sbjct: 351 QDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIRE---AFRVFDKDGNGYISAAEL 407
Query: 693 RQALTSAGYHLNNHILNIL---AHRYSGRDARISFDDF--MM 729
R +T+ G L + ++ + A D ++++++F MM
Sbjct: 408 RHVMTNLGEKLTDEEVDEMIREADI--DGDGQVNYEEFVQMM 447
Score = 39.5 bits (92), Expect = 0.003
Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 639 KDVCRSMVAMLDVD-----RSGKLGFEEFQQLWKD------IRNWKSVFKMYDQENSGYL 687
K ++V +++ G + + + +D I +K F ++D++ G +
Sbjct: 270 KFEGDTLVNRIELKGIDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTI 329
Query: 688 SPFELRQALTSAGYHLNNH-ILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKARDP 746
+ EL + S G + + +++ + + I F +F L M K D
Sbjct: 330 TTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF------LTMMARKMKDTDS 383
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 46.8 bits (112), Expect = 1e-06
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 647 AMLDVDRSGKLGFEEFQQLW----KDIRNWKSVFKMYDQENSGYLSPFELRQALT---SA 699
A+ G ++ F L K K VF++ D++ SG++ EL+ L +
Sbjct: 14 AISAFKDPGTFDYKRFFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAH 73
Query: 700 GYHLNN-HILNILAHRYSGRDARISFDDF--MM 729
G LN+ +LA S D +I D+F M+
Sbjct: 74 GRDLNDTETKALLAAGDSDHDGKIGADEFAKMV 106
Score = 28.3 bits (64), Expect = 2.9
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 623 LGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
L L+ + + ++++A D D GK+G +EF ++
Sbjct: 63 LKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKM 105
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 47.5 bits (114), Expect = 2e-06
Identities = 18/103 (17%), Positives = 40/103 (38%), Gaps = 13/103 (12%)
Query: 643 RSMVAMLDVDR--SGKLGFEEFQQLWKDIRNWKS---------VFKMYDQENSGYLSPFE 691
++ + + + FEEF + + N K +++D+E +G + E
Sbjct: 47 NKILGNPSKEEMNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAE 106
Query: 692 LRQALTSAGYHLNNHILNILAHRYSGRDARISFDDF--MMCAV 732
LR L + G + + L + I+++ F + +V
Sbjct: 107 LRHVLATLGEKMTEEEVEELMKGQEDSNGCINYEAFVKHIMSV 149
Score = 32.5 bits (75), Expect = 0.21
Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY---SGRDARISFDDFMM 729
K F ++D+ ++ ++ + G + N +N + A I+F++F
Sbjct: 11 KEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEF-- 68
Query: 730 CAVRLKTMIDLFKARDPSS 748
L + +D +
Sbjct: 69 ----LPMLQAAANNKDQGT 83
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 47.5 bits (113), Expect = 2e-06
Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQA 695
G K +A ++ + + + + L + + +K + +D N G + L++
Sbjct: 16 GILKARQERRLAEINREFLCDQKYSDEENLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRM 75
Query: 696 LTSAGYHLNN-HILNILAHRYSGRDARISFDDF--MM 729
+ G + + +++ G IS+ DF MM
Sbjct: 76 MEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMM 112
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 46.7 bits (112), Expect = 2e-06
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 644 SMVAMLDVDRSGKLGFEEFQQLWKDIRNWKS---------VFKMYDQENSGYLSPFELRQ 694
+ + ++ ++ E+F Q+ + F+++D++ +G + ELR
Sbjct: 41 AEITEIESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRY 100
Query: 695 ALTSAGYHLNNHILNILAHRYSGRDARISFDDF--MMCA 731
LTS G L+N ++ L +D +++ DF M+ A
Sbjct: 101 VLTSLGEKLSNEEMDELLKGVPVKDGMVNYHDFVQMILA 139
Score = 32.9 bits (76), Expect = 0.14
Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 9/81 (11%)
Query: 668 DIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDF 727
D +K F ++D+ +G + + L + G + + + + + F
Sbjct: 3 DDSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPA---EVDMEQF 59
Query: 728 MMCAVRLKTMIDLFKARDPSS 748
L+ + P
Sbjct: 60 ------LQVLNRPNGFDMPGD 74
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 44.9 bits (107), Expect = 2e-06
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDFM-MCA 731
+ +FK +D G +S EL AL + G + + ++A + D I F++F+ C
Sbjct: 6 ERIFKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFISFCN 65
Query: 732 VRLKTMIDLFKA 743
M D+ K
Sbjct: 66 ANPGLMKDVAKV 77
Score = 29.8 bits (68), Expect = 0.47
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 635 GGFSKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
G S D + M+A +D D G + F EF
Sbjct: 33 GSTSADEVQRMMAEIDTDGDGFIDFNEFISF 63
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 45.3 bits (108), Expect = 3e-06
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 10/93 (10%)
Query: 647 AMLDVDRSGKLGFEEFQQL----WKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYH 702
A+ D ++F Q+ K K +F++ D + SG++ EL+ L
Sbjct: 14 ALRDCQAPDSFSPKKFFQISGMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESG 73
Query: 703 LNNH----ILNILAHRYSGRDARISFDDF--MM 729
LA D +I ++F M+
Sbjct: 74 ARVLTASETKTFLAAADHDGDGKIGAEEFQEMV 106
Score = 34.2 bits (79), Expect = 0.034
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 623 LGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
L L+ + + ++ +A D D GK+G EEFQ++
Sbjct: 63 LKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQEM 105
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 47.5 bits (113), Expect = 3e-06
Identities = 11/126 (8%), Positives = 33/126 (26%), Gaps = 21/126 (16%)
Query: 623 LGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRN----------- 671
+ + T + +D R V+ L E++ + +
Sbjct: 65 MRQLVNA-TDEQVEKMRDAVRVFFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEP 123
Query: 672 ------WKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFD 725
S + + D + G + EL+ + + + + ++
Sbjct: 124 SLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFD-VPQEAAYTFFEKADTDKSGKLERT 182
Query: 726 DF--MM 729
+ +
Sbjct: 183 ELVHLF 188
Score = 35.6 bits (82), Expect = 0.038
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKD 668
++ + D D+SGKL E L++
Sbjct: 158 DVPQEAAYTFFEKADTDKSGKLERTELVHLFRK 190
Score = 34.4 bits (79), Expect = 0.077
Identities = 8/86 (9%), Positives = 23/86 (26%), Gaps = 10/86 (11%)
Query: 669 IRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLN----------NHILNILAHRYSGR 718
+ F +D ++ G + E+ +N + + H+
Sbjct: 35 LSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEP 94
Query: 719 DARISFDDFMMCAVRLKTMIDLFKAR 744
+ +D++ + R
Sbjct: 95 VNGLLREDWVEANRVFAEAERERERR 120
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 46.6 bits (111), Expect = 4e-06
Identities = 11/90 (12%), Positives = 21/90 (23%), Gaps = 12/90 (13%)
Query: 650 DVDRSGKLGFEEFQQLWKDIRN-----------WKSVFKMYDQENSGYLSPFELRQALTS 698
V + F K++ F+ D +S E
Sbjct: 63 AVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGM 122
Query: 699 AGYHLNNHILNILAHRYSGRDARISFDDFM 728
G + D +S ++F+
Sbjct: 123 LGLD-KTMAPASFDAIDTNNDGLLSLEEFV 151
Score = 37.4 bits (87), Expect = 0.006
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKD 668
G K + + +D + G L EEF D
Sbjct: 124 GLDKTMAPASFDAIDTNNDGLLSLEEFVIAGSD 156
Score = 32.0 bits (73), Expect = 0.38
Identities = 8/86 (9%), Positives = 21/86 (24%), Gaps = 17/86 (19%)
Query: 661 EFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTS--AGYHLNNHILNILAHRYSGR 718
+ ++ K+ F D + G ++ + + +L +G
Sbjct: 2 DLW-----VQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGV 56
Query: 719 ----------DARISFDDFMMCAVRL 734
I F+ +
Sbjct: 57 WDNFLTAVAGGKGIDETTFINSMKEM 82
Score = 30.1 bits (68), Expect = 1.9
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 639 KDVCRSMVAMLDVDRSGKLGFEEFQQLWK----DIRNWKSVFKMYDQENSGYLSPFELRQ 694
+ +D + + +E+ + D + F D N G LS E
Sbjct: 93 EGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAIDTNNDGLLSLEEFVI 152
Query: 695 A 695
A
Sbjct: 153 A 153
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 46.3 bits (110), Expect = 5e-06
Identities = 13/102 (12%), Positives = 31/102 (30%), Gaps = 16/102 (15%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLWKDI-------------RNWKSVFKMYDQENSGYLSP 689
+ + + D D ++ EEF + + D + G ++
Sbjct: 58 QGLAGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTV 117
Query: 690 FELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDF--MM 729
+ +ALT+ G + A + D ++ +
Sbjct: 118 ADTARALTAFGVP-EDLARQAAAALDTDGDGKVGETEIVPAF 158
Score = 37.4 bits (87), Expect = 0.007
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKD 668
G +D+ R A LD D GK+G E +
Sbjct: 128 GVPEDLARQAAAALDTDGDGKVGETEIVPAFAR 160
Score = 29.7 bits (67), Expect = 2.2
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 670 RNWKSVFKMYDQENSGYLSPFELRQALTSAG 700
R + F +DQ+ +G++ + A +
Sbjct: 4 RRIAARFTTFDQDGNGHIDRSDFSGAAKAML 34
Score = 27.8 bits (62), Expect = 9.4
Identities = 9/75 (12%), Positives = 21/75 (28%), Gaps = 4/75 (5%)
Query: 627 LETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWK----DIRNWKSVFKMYDQE 682
L K ++ + + + D D G + + + + D +
Sbjct: 85 LRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALTAFGVPEDLARQAAAALDTD 144
Query: 683 NSGYLSPFELRQALT 697
G + E+ A
Sbjct: 145 GDGKVGETEIVPAFA 159
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 44.8 bits (106), Expect = 5e-06
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 660 EEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY-SGR 718
+ + I F+ +D + +S E R L + + L +
Sbjct: 17 KAVTSHYHAITQ---EFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNA 73
Query: 719 DARISFDDFM 728
R+ + DF+
Sbjct: 74 KGRLKYPDFL 83
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 46.8 bits (111), Expect = 5e-06
Identities = 16/127 (12%), Positives = 37/127 (29%), Gaps = 22/127 (17%)
Query: 639 KDVCRSMVAMLDVDRSGKLGFEEFQQLW----------KDIRNW-----KSVFKMYDQEN 683
+D R + D+++ + +EE+ +W D+ W +FK D
Sbjct: 59 EDEWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSG 118
Query: 684 SGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKA 743
G + E + + + + G + + + L +
Sbjct: 119 DGIVDLEEFQNYCKNFQ-LQCADVPAVYNVITDGGKVTFDLNRY------KELYYRLLTS 171
Query: 744 RDPSSTN 750
+ N
Sbjct: 172 PAADAGN 178
Score = 37.2 bits (86), Expect = 0.008
Identities = 1/33 (3%), Positives = 9/33 (27%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKD 668
++ ++ +++L+
Sbjct: 135 QLQCADVPAVYNVITDGGKVTFDLNRYKELYYR 167
Score = 28.3 bits (63), Expect = 6.3
Identities = 12/96 (12%), Positives = 33/96 (34%), Gaps = 14/96 (14%)
Query: 647 AMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNH 706
LD++ G + +F+ + + + N G LS + + S L +
Sbjct: 16 FFLDMNHDGSIQDNDFEDMMTRYK----------EVNKGSLSDADYKSMQAS----LEDE 61
Query: 707 ILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFK 742
++ +D +S+++++ +
Sbjct: 62 WRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVA 97
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 45.5 bits (108), Expect = 1e-05
Identities = 15/115 (13%), Positives = 36/115 (31%), Gaps = 24/115 (20%)
Query: 650 DVDRSGKLGFEEFQQLWKDI-----------------RNWKSVFKMYDQENSGYLSPFEL 692
++ ++ F +F WK + +VF ++D++ SG ++ E
Sbjct: 76 GMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEW 135
Query: 693 RQALTSAGYHLNN-HILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKARDP 746
+ +G + H + D+ + + + DP
Sbjct: 136 KAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMT------RQHLGFWYTLDP 184
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 42.2 bits (100), Expect = 2e-05
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLWKDI------RNWKSVFKMYDQENSGYLSPFELRQAL 696
++ +DV+ G + +EE + + + +FK D + +G + E +
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
Query: 697 TS 698
S
Sbjct: 63 GS 64
Score = 33.7 bits (78), Expect = 0.020
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY----SGRDARISFDDFM 728
+++FK D G +S E++ ++ N +L ++ +G I ++F
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNG---EIDQNEFA 59
Score = 31.0 bits (71), Expect = 0.14
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIR 670
++ + + + +D D +G++ EF + + I+
Sbjct: 32 IKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQ 66
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 44.5 bits (106), Expect = 2e-05
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 16/94 (17%)
Query: 649 LDVDRSGKLGFEEFQQLW----------KDIRNWKSVFKMYDQENSGYLSPFELRQALTS 698
+ + SG + F F ++ I FK+ D + G + L + LT+
Sbjct: 67 MIKEASGPINFTVFLTMFGEKLKGADPEDVIMG---AFKVLDPDGKGSIKKSFLEELLTT 123
Query: 699 AGYHLNNH-ILNILAHRYSGRDARISFDDF--MM 729
G I N+ A + + + ++
Sbjct: 124 GGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYVI 157
Score = 31.8 bits (73), Expect = 0.41
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 653 RSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHL-NNHILNIL 711
F F + +I ++K F + DQ G + +LR+ + G N L+ +
Sbjct: 10 EGSSNVFSMFDE--TEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAM 67
Query: 712 AHRYSGRDARISFDDF--MM 729
SG I+F F M
Sbjct: 68 IKEASG---PINFTVFLTMF 84
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 44.7 bits (106), Expect = 3e-05
Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 29/113 (25%)
Query: 645 MVAMLDVDRSGKLGFEEF-------------QQLWKDIRNWKSV----------FKMYDQ 681
++ D S ++ F F +D + + + F++YD
Sbjct: 66 IIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDL 125
Query: 682 ENSGYLSPFELRQALTS-AGYHLNNHILNILAHRY-----SGRDARISFDDFM 728
+ G +S E+ Q L G + L +A R D +SF +F
Sbjct: 126 DRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFT 178
Score = 35.1 bits (81), Expect = 0.041
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 667 KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDD 726
+ F+ D+ GYLS +L+Q A L + I+ S R+ F
Sbjct: 26 ASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVNPLGDRIIESFFPDGSQ---RVDFPG 82
Query: 727 FM-MCAVRLKTMIDLFKARDPSSTNKATFTLEE 758
F+ + A + + +DP +
Sbjct: 83 FVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNK 115
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 43.7 bits (104), Expect = 3e-05
Identities = 18/103 (17%), Positives = 40/103 (38%), Gaps = 20/103 (19%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLW-----------KDIRNWKSVFKMYDQENSGYLSPFE 691
++ L+ F+ ++ K++ + F+ D+E +G + E
Sbjct: 44 NTIKGQLNAKE---FDLATFKTVYRKPIKTPTEQSKEMLD---AFRALDKEGNGTIQEAE 97
Query: 692 LRQALTSAGYHLNNH-ILNILAHRYSGRDARISFDDF--MMCA 731
LRQ L + G L + + ++ D I+++ F M+
Sbjct: 98 LRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVDMLVT 140
Score = 32.9 bits (76), Expect = 0.15
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDA-RISFDDFM-MC 730
+ F+++D++N G +S EL AL S G + N LN + + +A F +
Sbjct: 8 QECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQL---NAKEFDLATFKTVY 64
Query: 731 AVRLKTMID 739
+KT +
Sbjct: 65 RKPIKTPTE 73
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 43.4 bits (103), Expect = 4e-05
Identities = 15/111 (13%), Positives = 38/111 (34%), Gaps = 24/111 (21%)
Query: 639 KDVCRSM--------VAMLDVDRSGKLGFEEFQQL----------WKDIRNWKSVFKMYD 680
R + + L +E++ + +++ +F +D
Sbjct: 38 SYNARKLGLAPSSIDEKKIKELYGDNLTYEQYLEYLSICVHDKDNVEELIK---MFAHFD 94
Query: 681 QENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDF--MM 729
+GYL+ +++ LT+ G L + + +S + I + F +
Sbjct: 95 NNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAFSS-EDNIDYKLFCEDI 144
Score = 33.0 bits (76), Expect = 0.14
Identities = 6/80 (7%), Positives = 23/80 (28%), Gaps = 9/80 (11%)
Query: 667 KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDD 726
+ + ++ + G +S G ++ + Y ++++
Sbjct: 12 EKVDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYGD---NLTYEQ 68
Query: 727 FMMCAVRLKTMIDLFKARDP 746
+ L+ + +D
Sbjct: 69 Y------LEYLSICVHDKDN 82
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 42.9 bits (102), Expect = 5e-05
Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 24/112 (21%)
Query: 639 KDVCRSM--------VAMLDVDRSGKLGFEEFQQLW----------KDIRNWKSVFKMYD 680
D+ SM + + + G + F F ++ IRN F +D
Sbjct: 30 HDMLASMGKNPTDEYLEGMMSEAPGPINFTMFLTMFGEKLNGTDPEDVIRN---AFACFD 86
Query: 681 QENSGYLSPFELRQALTSAGYHLNNH-ILNILAHRYSGRDARISFDDF--MM 729
+E SG++ LR+ LT+ G + + + + ++ +F ++
Sbjct: 87 EEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRIL 138
Score = 36.3 bits (85), Expect = 0.010
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDF--MM 729
K F M DQ G++ +L L S G + + L + G I+F F M
Sbjct: 10 KEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAPG---PINFTMFLTMF 65
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 41.5 bits (98), Expect = 5e-05
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 668 DIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDF 727
DI + + +FK +D G +S EL AL + G + + ++A + D ISFD+F
Sbjct: 9 DIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEF 68
Query: 728 M-MCAVRLKTMIDLFKA 743
+ D+ K
Sbjct: 69 TDFARANRGLVKDVSKI 85
Score = 28.4 bits (64), Expect = 2.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 635 GGFSKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
G + D R M+A +D D G + F+EF
Sbjct: 41 GSVTPDEVRRMMAEIDTDGDGFISFDEFTDF 71
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 42.3 bits (100), Expect = 7e-05
Identities = 7/68 (10%), Positives = 19/68 (27%), Gaps = 13/68 (19%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQL----------WKDIRNWKSVFKMYDQENSGYLSPFEL 692
+SM+ + +E+ + ++ F + ++ L
Sbjct: 6 KSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCK---GFSLLADPERHLITAESL 62
Query: 693 RQALTSAG 700
R+ G
Sbjct: 63 RRNSGILG 70
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 41.5 bits (98), Expect = 8e-05
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 647 AMLDVDRSGKLGFEEFQQL----WKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYH 702
A+ + ++F Q+ K + K VF + D++ SG++ EL L
Sbjct: 14 AIGAFTAADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSD 73
Query: 703 LNN----HILNILAHRYSGRDARISFDDF--MM 729
+ ++A D +I ++F ++
Sbjct: 74 ARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLV 106
Score = 32.3 bits (74), Expect = 0.16
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 623 LGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWK 667
LG+ L+ ++ S ++++A D D GK+G EEF L
Sbjct: 63 LGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVA 107
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 43.3 bits (102), Expect = 8e-05
Identities = 12/127 (9%), Positives = 35/127 (27%), Gaps = 29/127 (22%)
Query: 645 MVAMLDVDRSGKLG-----FEEFQQLWK-----------------DIRNWKSVFKMYDQE 682
+G + + + WK ++F + D++
Sbjct: 62 DAVEAFFGGAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKD 121
Query: 683 NSGYLSPFELRQALTSAGYHLNNHILN-ILAHRYSGRDARISFDDFMMCAVRLKTMIDLF 741
+G ++ E + +AG ++ ++ D+ + + +
Sbjct: 122 QNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMT------RQHLGFW 175
Query: 742 KARDPSS 748
DP+
Sbjct: 176 YTMDPAC 182
Score = 32.1 bits (73), Expect = 0.37
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEFQQLWKD 668
S + C + D+D SG+L +E +
Sbjct: 143 SSEDCEETFRVCDIDESGQLDVDEMTRQHLG 173
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 39.8 bits (94), Expect = 1e-04
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNN-HILNILAHRYSGRDARISFDDF--MM 729
+ F+ +DQ+ G+++ ELR+A+ G L + ++ +D R+++++F M+
Sbjct: 9 QVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARML 68
Score = 26.7 bits (60), Expect = 5.9
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
++ +M+ DVD+ G++ +EEF ++
Sbjct: 40 PQEELDAMIREADVDQDGRVNYEEFARM 67
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 42.8 bits (101), Expect = 1e-04
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 28/112 (25%)
Query: 645 MVAMLDVDRSGKLGFEEF-----------------QQLWKDIRNWKSV-----FKMYDQE 682
++ + ++ F F + N +S F++YD +
Sbjct: 66 IINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLD 125
Query: 683 NSGYLSPFELRQALTS-AGYHLNNHILNILAHRY-----SGRDARISFDDFM 728
+S EL Q L G ++++ L +A R D+ ISF +F+
Sbjct: 126 KDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFV 177
Score = 35.9 bits (83), Expect = 0.025
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 11/90 (12%)
Query: 654 SGKLGFEEFQQL-------WKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNH 706
S L EE +++ I S F D+ +G LS + ++ A L +
Sbjct: 6 STLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDR 65
Query: 707 ILNILAHRYSGRDARISFDDFM-MCAVRLK 735
I+N +++F FM A
Sbjct: 66 IINAFFSEGED---QVNFRGFMRTLAHFRP 92
Score = 28.2 bits (63), Expect = 9.3
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 639 KDVCRSMVAMLDVDRSGKLGFEEFQQLWK 667
+ + D D + F EF ++ +
Sbjct: 153 GSIADRTIQEADQDGDSAISFTEFVKVLE 181
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 40.2 bits (95), Expect = 1e-04
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 652 DRSGKLGFEEF---QQLWKD-IRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHI 707
SG + ++ ++L ++ I K +FKM D +NSG ++ EL+ L G L
Sbjct: 1 HSSGHIDDDDKHMAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESE 60
Query: 708 LNILAHRY-SGRDARISFDDF--MM 729
+ L + I + +F
Sbjct: 61 IKDLMDAADIDKSGTIDYGEFIAAT 85
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 41.7 bits (99), Expect = 2e-04
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 15/92 (16%)
Query: 652 DRSGKLGFEEFQQLW----------KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGY 701
+ G L F F ++ + IRN F M+D++ + L+ ++ L + G
Sbjct: 62 EAPGPLNFTMFLSIFSDKLSGTDSEETIRN---AFAMFDEQETKKLNIEYIKDLLENMGD 118
Query: 702 HLNNHILNILAHRYSGRDARISFDDF--MMCA 731
+ N + + + + F M+
Sbjct: 119 NFNKDEMRMTFKEAPVEGGKFDYVKFTAMIKG 150
Score = 37.1 bits (87), Expect = 0.006
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 652 DRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNIL 711
D++ + Q K I+ K F M D + G++S +++ G ++ L +
Sbjct: 2 DKAASGVLTKLPQ--KQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAM 59
Query: 712 AHRYSGRDARISFDDF--MM 729
G ++F F +
Sbjct: 60 LKEAPG---PLNFTMFLSIF 76
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 40.4 bits (95), Expect = 2e-04
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 659 FEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNN-HILNILAHRYSG 717
+ + L + +K + +D +G + L++ L G + + ++ SG
Sbjct: 21 YSSDEDLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSG 80
Query: 718 RDARISFDDF--MM 729
S+ DF MM
Sbjct: 81 SGETFSYPDFLRMM 94
Score = 28.1 bits (63), Expect = 3.6
Identities = 1/28 (3%), Positives = 10/28 (35%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
+ + ++ + + +F ++
Sbjct: 66 THLELKKLIGEVSSGSGETFSYPDFLRM 93
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 41.4 bits (98), Expect = 2e-04
Identities = 14/90 (15%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 652 DRSGKLGFEEFQQLW----------KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGY 701
+ G+L F F L+ +RN F M+D++ G++ L+ L + G
Sbjct: 60 ECPGQLNFTAFLTLFGEKVSGTDPEDALRN---AFSMFDEDGQGFIPEDYLKDLLENMGD 116
Query: 702 HLNNHILNILAHRYSGRDARISFDDF--MM 729
+ + + + ++ + +++ +
Sbjct: 117 NFSKEEIKNVWKDAPLKNKQFNYNKMVDIK 146
Score = 36.3 bits (85), Expect = 0.012
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDF--MM 729
K F M DQ+ G++ +L+ +S G + LN + G +++F F +
Sbjct: 19 KEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECPG---QLNFTAFLTLF 74
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 39.9 bits (94), Expect = 2e-04
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNN-HILNILAHRYSGRDARISFDDF--MM 729
K FK++D++ +GY+S ELR + + G L + + ++ D ++++++F MM
Sbjct: 12 KEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMM 71
Query: 730 CAVR 733
VR
Sbjct: 72 MTVR 75
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 41.7 bits (98), Expect = 3e-04
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 16/100 (16%)
Query: 645 MVAMLDVDRSGKLGFEEFQQLWKDIRNWKSV-------FKMYDQENSGYLSPFELRQALT 697
+ + DV R+G + F EF + V FK+YD +G++ EL++ +
Sbjct: 79 IFDVFDVKRNGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVV 138
Query: 698 SAGYH---------LNNHILNILAHRYSGRDARISFDDFM 728
+ + + + D +I D++
Sbjct: 139 ALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWK 178
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 41.7 bits (98), Expect = 4e-04
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 13/97 (13%)
Query: 645 MVAMLDVDRSGKLGFEEFQQLWKDIRNWKSV------FKMYDQENSGYLSPFELRQALTS 698
+ D ++ G + F EF I K FK+YD + +G + EL +
Sbjct: 62 VYNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMA 121
Query: 699 AGYHLNN-------HILNILAHRYSGRDARISFDDFM 728
I + D ++ ++F+
Sbjct: 122 VQALNGQQTLSPEEFINLVFHKIDINNDGELTLEEFI 158
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 39.6 bits (93), Expect = 4e-04
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 647 AMLDVDRSGKLGFEEFQQLW----KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAG 700
A+ + ++F Q K +F+ D + SGYL EL+ L
Sbjct: 14 ALQECQDPDTFEPQKFFQTSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQ 71
Score = 33.0 bits (76), Expect = 0.066
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 623 LGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
L L+ + ++ +S++ D D GK+G +EFQ++
Sbjct: 63 LKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEM 105
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 40.5 bits (95), Expect = 7e-04
Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 14/111 (12%)
Query: 645 MVAMLDVDRSGKLGFEEFQQLWKDIRNW------KSVFKMYDQENSGYLSPFELRQALTS 698
M D ++ G + F E+ + + FK+YD + +G + EL + +
Sbjct: 57 MFETFDFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKA 116
Query: 699 AGYH--------LNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLF 741
+ D +S ++FM + + ++D+
Sbjct: 117 IRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLEEFMEGVQKDEVLLDIL 167
Score = 28.2 bits (63), Expect = 7.0
Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 623 LGAALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKD----------IRNW 672
+ A E +++ + +D++ G+L EEF + + +
Sbjct: 114 IKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLEEFMEGVQKDEVLLDILTRSLDL 173
Query: 673 KSVFKMYDQENSGYLSPFELRQAL 696
+ K+ + +P E +A
Sbjct: 174 THIVKLIQNDGKNPHAPEEAEEAA 197
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 38.4 bits (90), Expect = 7e-04
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 656 KLGFEEFQQLWKDIRNWKS------VFKMYDQENSGYLSPFELRQALTSAGYHLNN-HIL 708
E +++ S F++ D++ +GY+S ELR +T+ G L + +
Sbjct: 9 HGSSGENLYFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVD 68
Query: 709 NILAHRYSGRDARISFDDF--MMCA 731
++ D ++++++F MM A
Sbjct: 69 EMIREADIDGDGQVNYEEFVQMMTA 93
Score = 27.2 bits (61), Expect = 6.6
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQL 665
M+ D+D G++ +EEF Q+
Sbjct: 67 VDEMIREADIDGDGQVNYEEFVQM 90
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 40.6 bits (95), Expect = 9e-04
Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 18/101 (17%)
Query: 645 MVAMLDVDRSGKLGFEEF--------QQLWKDIRNWKSVFKMYDQENSGYLSPFELRQAL 696
+ + D +G LGFEEF D + F++YD + G++ E++Q +
Sbjct: 90 VFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKI-HFSFQLYDLKQQGFIERQEVKQMV 148
Query: 697 TSA----GYHLNNHILNILAHRY-----SGRDARISFDDFM 728
+ G +L + ++ + + + D +I +++
Sbjct: 149 VATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWR 189
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 37.5 bits (88), Expect = 9e-04
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNH-ILNILAHRYSGRDARISFDDFM-MC 730
K F ++D +G + EL+ A+ + G+ + IL ++ + I FDDF+ +
Sbjct: 10 KEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIM 69
Query: 731 AVRLK 735
++K
Sbjct: 70 TEKIK 74
Score = 28.6 bits (65), Expect = 1.6
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
K ++ D + +G +GF++F +
Sbjct: 41 KKPEILELMNEYDREGNGYIGFDDFLDI 68
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 37.6 bits (88), Expect = 0.001
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNN-HILNILAHRYSGRDARISFDDF--MM 729
K F+++D++N L+ EL + + G + I I+ + + F +M
Sbjct: 17 KEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTIM 76
Score = 28.4 bits (64), Expect = 2.4
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
+K +V D D SGK E F +
Sbjct: 48 TKQKISEIVKDYDKDNSGKFDQETFLTI 75
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 41.4 bits (96), Expect = 0.001
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 672 WKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNH-ILNILAHRYSGRDARISFDDFMMC 730
+++ F +D++ +G + + R L S GY++ I++ R ++F F+
Sbjct: 727 FRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQAFIDF 786
Query: 731 AVRLKTMID 739
R D
Sbjct: 787 MSRETADTD 795
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 37.2 bits (87), Expect = 0.001
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNH-------ILNILAHRYSGRDARISFD 725
++ FK D GY++ EL+ + + + ++ D +IS +
Sbjct: 10 EAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKE 69
Query: 726 DF--MM 729
+F
Sbjct: 70 EFLNAN 75
Score = 34.1 bits (79), Expect = 0.017
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 625 AALETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
L+ K+ ++ M D + GK+ EEF
Sbjct: 34 VTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLNA 74
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 37.6 bits (88), Expect = 0.001
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 647 AMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNN- 705
+M D + E I +K+ F M+D + G +S EL + G +
Sbjct: 2 SMTDQQAEARAFLSEEM-----IAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKE 56
Query: 706 HILNILAHRYSGRDARISFDDF--MM 729
+ I+ I F++F MM
Sbjct: 57 ELDAIIEEVDEDGSGTIDFEEFLVMM 82
Score = 30.3 bits (69), Expect = 0.46
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
+K+ +++ +D D SG + FEEF +
Sbjct: 54 TKEELDAIIEEVDEDGSGTIDFEEFLVM 81
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 36.4 bits (85), Expect = 0.003
Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNN--HILNILAHRYSGRDARISFDDF--M 728
FK++D G + E + + G + + + I +F +
Sbjct: 11 LRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDL 70
Query: 729 M 729
+
Sbjct: 71 I 71
Score = 27.1 bits (61), Expect = 4.9
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 634 EGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
E + + D D +G + EF L
Sbjct: 39 EEPLTDAEVEEAMKEADEDGNGVIDIPEFMDL 70
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 37.9 bits (88), Expect = 0.005
Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 20/126 (15%)
Query: 645 MVAMLDVDRSGKLGFEEFQQLWKDIRNW------KSVFKMYDQENSGYLSPFELRQALTS 698
+ D + G + F EF K F MYD + +GY+S E+ + + +
Sbjct: 68 VFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQA 127
Query: 699 AG-------------YHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLFKARD 745
I + RD ++S ++F+ A +++ L + D
Sbjct: 128 IYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLLQC-D 186
Query: 746 PSSTNK 751
PSS +
Sbjct: 187 PSSAGQ 192
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 37.9 bits (88), Expect = 0.006
Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 24/111 (21%)
Query: 642 CRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKS------VFKMYDQENSGYLSPFELRQA 695
+M D + + F E+ + FK+YD++ +G + EL
Sbjct: 61 VEAMFRAFDTNGDNTIDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDI 120
Query: 696 LTSAGYHLNNHILNILAHRYSG------------------RDARISFDDFM 728
+ S + + A + D ++S ++F+
Sbjct: 121 VESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFV 171
Score = 27.9 bits (62), Expect = 9.9
Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 7/124 (5%)
Query: 648 MLDVDRSGKLGFEEFQQLWKDIRNWKS------VFKMYDQENSGYLSPFELRQALTSAGY 701
L+ SG L EF++ +K N ++ +F+ +D + E AL
Sbjct: 31 FLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLVLR 90
Query: 702 HLNNHILNILAHRYS-GRDARISFDDFMMCAVRLKTMIDLFKARDPSSTNKATFTLEEWV 760
H L Y R+ I + + + + + T EE V
Sbjct: 91 GTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVV 150
Query: 761 ENTL 764
+
Sbjct: 151 DRIF 154
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 37.3 bits (87), Expect = 0.019
Identities = 11/102 (10%), Positives = 27/102 (26%), Gaps = 13/102 (12%)
Query: 638 SKDVCRSMVAML----DVDRSGKLGFEEF---QQLWKDIRNWKSV----FKMYDQENSGY 686
+C + + L F F ++ + + + S
Sbjct: 339 YTKMCDPGMTAFEPEALGNLVEGLDFHRFYFENLWSRNSKPVHTTILNPHIHLMGDESAC 398
Query: 687 LSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDFM 728
++ + Q L + G + + + RD + F
Sbjct: 399 IAYIRITQYLDAGG--IPRTAQSEETRVWHRRDGKWQIVHFH 438
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 33.6 bits (78), Expect = 0.019
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNH-ILNILAHRYSGRDARISFDDF--MM 729
K VF+ +D+ G LS E R+ + + I+ + ++ D+F +
Sbjct: 4 KRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCI 63
Score = 27.5 bits (62), Expect = 3.4
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEFQQLWK 667
+++ +DVD +G+L +EF +
Sbjct: 35 TQEDIVKFFEEIDVDGNGELNADEFTSCIE 64
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 35.8 bits (83), Expect = 0.026
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 17/91 (18%)
Query: 652 DRSGKLGFEEFQQLW----------KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGY 701
+ G + F F ++ I N F ++D E G L+++LT+ G
Sbjct: 101 EAPGPINFTMFLTIFGDRIAGTDEEDVIVN---AFNLFD-EGDGKCKEETLKRSLTTWGE 156
Query: 702 HLNNH-ILNILAHRYSGRDARISFDDF--MM 729
+ + L+ + I F ++
Sbjct: 157 KFSQDEVDQALSEAPIDGNGLIDIKKFAQIL 187
Score = 34.2 bits (79), Expect = 0.081
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDF--MM 729
K F++ DQ+ G++S ++R S G L+ + G I+F F +
Sbjct: 60 KEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEAPG---PINFTMFLTIF 115
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 33.9 bits (78), Expect = 0.030
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 673 KSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRYSGRDARISFDDFM 728
+SVF D SG L E R T + + RD I+F +F
Sbjct: 30 RSVFAACDANRSGRLEREEFRALCTELRVR-PADAEAVFQRLDADRDGAITFQEFA 84
Score = 32.3 bits (74), Expect = 0.11
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLWKDIR----NWKSVFKMYDQENSGYLSPFELRQALTS 698
RS+ A D +RSG+L EEF+ L ++R + ++VF+ D + G ++ E +
Sbjct: 30 RSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEFARGFLG 89
Query: 699 A 699
+
Sbjct: 90 S 90
Score = 31.6 bits (72), Expect = 0.18
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWK 667
++ LD DR G + F+EF + +
Sbjct: 57 RVRPADAEAVFQRLDADRDGAITFQEFARGFL 88
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 35.3 bits (81), Expect = 0.041
Identities = 17/118 (14%), Positives = 42/118 (35%), Gaps = 21/118 (17%)
Query: 645 MVAMLDVDRSGKLGFEEFQQLWKDIRNWKS------VFKMYDQENSGYLSPFELRQALTS 698
+ D + G L F+E+ K+ F +YD + +G +S E+ + + +
Sbjct: 76 VFRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMA 135
Query: 699 AGYHLNNHILNILAHRYSG---------------RDARISFDDFMMCAVRLKTMIDLF 741
+ + +L + D +++ +F+ + K ++ L
Sbjct: 136 IFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLANKEILRLI 193
Score = 33.0 bits (75), Expect = 0.24
Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 11/124 (8%)
Query: 649 LDVDRSGKLGFEEFQQLWKDIRNWKS-------VFKMYDQENSGYLSPFELRQALTSAGY 701
L +G++ ++FQ ++ VF+ +D G L E AL
Sbjct: 43 LKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTA 102
Query: 702 HLNNHILNILAHRYS-GRDARISFDDFMMCAVRLKTMIDLFKARDPSSTNKATFTLEEWV 760
N L Y + IS ++ + + + + D T E+
Sbjct: 103 GKTNQKLEWAFSLYDVDGNGTISKNEVLEI---VMAIFKMITPEDVKLLPDDENTPEKRA 159
Query: 761 ENTL 764
E
Sbjct: 160 EKIW 163
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 34.8 bits (80), Expect = 0.046
Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 19/116 (16%)
Query: 645 MVAMLDVDRSGKLGFEEFQQLWKDIRN------WKSVFKMYDQENSGYLSPFELRQALTS 698
+ + D ++ G++ F EF Q + FK+YD +N GY++ E+ + +
Sbjct: 68 VFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDA 127
Query: 699 AG-------------YHLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLF 741
+ I A D +++ +F + +++
Sbjct: 128 IYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKADPSIVQAL 183
Score = 27.9 bits (62), Expect = 8.8
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 639 KDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYD 680
+ + AM+D + GKL +EFQ+ K + +YD
Sbjct: 146 EKRVDRIFAMMDKNADGKLTLQEFQEGSKADPSIVQALSLYD 187
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 35.2 bits (81), Expect = 0.053
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 19/103 (18%)
Query: 645 MVAMLDVDRSGKLGFEEF----QQLWKDIRNWK--SVFKMYDQENSGYLSPFELRQALTS 698
+ D D +G + FE+F L + K F +YD GY++ E+ + +
Sbjct: 107 LFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKA 166
Query: 699 AGYHLNN-------------HILNILAHRYSGRDARISFDDFM 728
+ H+ +D ++ D+F+
Sbjct: 167 IYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFI 209
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 34.4 bits (79), Expect = 0.076
Identities = 20/118 (16%), Positives = 45/118 (38%), Gaps = 23/118 (19%)
Query: 645 MVAMLDVDRSGKLGFEEFQQ--------LWKDIRNWKSVFKMYDQENSGYLSPFELRQAL 696
+ + D D++G + F+EF D W F++YD +N+G +S E+ + +
Sbjct: 68 VFNVFDADKNGYIDFKEFICALSVTSRGELNDKLIW--AFQLYDLDNNGLISYDEMLRIV 125
Query: 697 TSAGY-------------HLNNHILNILAHRYSGRDARISFDDFMMCAVRLKTMIDLF 741
+ + I +D +++ ++F + R T++
Sbjct: 126 DAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKRDPTIVSAL 183
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 32.2 bits (74), Expect = 0.082
Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 673 KSVFKMYDQE--NSGYLSPFELRQALTSAGYHLNNH---ILNILAHRYSGRDARISFDDF 727
K F+++ + + +S EL+ + + G L + ++ D +SF++F
Sbjct: 8 KGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEF 67
Query: 728 --MMCAV 732
MM +
Sbjct: 68 LVMMKKI 74
Score = 29.1 bits (66), Expect = 0.83
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 638 SKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
M+ +D + G++ FEEF +
Sbjct: 43 GMSTLDEMIEEVDKNGDGEVSFEEFLVM 70
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 32.8 bits (75), Expect = 0.096
Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 668 DIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILN-ILAHRYSGRDARISFDD 726
++ +F +D+ SG+L+ + R L + L L I +D +++ ++
Sbjct: 12 SRLKYRQLFNSHDKTMSGHLTGPQARTILMQSS--LPQAQLASIWNLSDIDQDGKLTAEE 69
Query: 727 FMMC 730
F++
Sbjct: 70 FILA 73
Score = 28.6 bits (64), Expect = 2.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEF 662
+ S+ + D+D+ GKL EEF
Sbjct: 44 SLPQAQLASIWNLSDIDQDGKLTAEEF 70
Score = 27.4 bits (61), Expect = 8.1
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 647 AMLDVDRSGKLGFEEFQQLWK----DIRNWKSVFKMYDQENSGYLS 688
D SG L + + + S++ + D + G L+
Sbjct: 21 NSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLT 66
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 32.0 bits (73), Expect = 0.13
Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 667 KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNILAHRY-SGRDARISFD 725
+ + +F D++ G++S E+R+ G L + +L + + ++S D
Sbjct: 7 AEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTG--LPSTLLAHIWSLCDTKDCGKLSKD 64
Query: 726 DFMMC 730
F +
Sbjct: 65 QFALA 69
Score = 28.5 bits (64), Expect = 2.0
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEF 662
G + + ++ D GKL ++F
Sbjct: 40 GLPSTLLAHIWSLCDTKDCGKLSKDQF 66
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 33.6 bits (77), Expect = 0.14
Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 18/102 (17%)
Query: 645 MVAMLDVDRS-GKLGFEEFQQLWKDIRNWKSV-------FKMYDQENSGYLSPFELRQAL 696
+ + + L FE+F L + + F+++D ++ G L+ +L + +
Sbjct: 65 ICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLV 124
Query: 697 TS-----AGYHLNNHILNILAHRY-----SGRDARISFDDFM 728
L+ + L RD I+ +F
Sbjct: 125 NCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQ 166
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.28
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 34/63 (53%)
Query: 99 EK-AYAKLHGSYEALKGGSTCEAMEDFTGGVSEMYELNEAPSNLWQILLKAHERSSLMGC 157
EK A KL S LK +Y + AP+ + +KA
Sbjct: 18 EKQALKKLQAS---LK-----------------LYADDSAPA----LAIKA--------- 44
Query: 158 SIE 160
++E
Sbjct: 45 TME 47
Score = 29.5 bits (65), Expect = 2.2
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 11/37 (29%)
Query: 417 QKNRRAQKKTGAECLTIGFAVYQIEDPDNVPTPLDLN 453
+K A KK L +Y D+ P L +
Sbjct: 18 EKQ--ALKK-----LQASLKLYA---DDSAPA-LAIK 43
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 30.8 bits (70), Expect = 0.29
Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 667 KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILN-ILAHRYSGRDARISFD 725
+ + + + FK + +G++ ++ T + L L+ I +D ++ D
Sbjct: 6 EQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK--LPILELSHIWELSDFDKDGALTLD 63
Query: 726 DFMMC 730
+F
Sbjct: 64 EFCAA 68
Score = 28.5 bits (64), Expect = 2.1
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEF 662
+ + D D+ G L +EF
Sbjct: 39 KLPILELSHIWELSDFDKDGALTLDEF 65
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 32.5 bits (74), Expect = 0.33
Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 18/102 (17%)
Query: 645 MVAMLDVDRS-GKLGFEEFQQLWKDIRNWKSV-------FKMYDQENSGYLSPFELRQAL 696
+ + + L FE+F L + + F+++D ++ G L+ +L + +
Sbjct: 96 ICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLV 155
Query: 697 T-----SAGYHLNNHILNILAHRY-----SGRDARISFDDFM 728
L+ + L RD I+ +F
Sbjct: 156 NCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQ 197
Score = 28.3 bits (63), Expect = 9.1
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 639 KDVCRSMVAMLDVDRSGKLGFEEFQQL 665
K + +++ D+DR G + EFQ +
Sbjct: 173 KQLIDNILEESDIDRDGTINLSEFQHV 199
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 31.3 bits (71), Expect = 0.35
Identities = 9/65 (13%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 667 KDIRNWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILN-ILAHRYSGRDARISFD 725
+ + + F+ + S ++S + T + L+ L+ I + D ++
Sbjct: 19 EQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSK--LSIPELSYIWELSDADCDGALTLP 76
Query: 726 DFMMC 730
+F
Sbjct: 77 EFCAA 81
Score = 28.6 bits (64), Expect = 3.2
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEF 662
S + + D D G L EF
Sbjct: 52 KLSIPELSYIWELSDADCDGALTLPEF 78
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.1 bits (72), Expect = 0.42
Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 36/91 (39%)
Query: 492 EPNEEGEFI--LRVFSEHKNNMEENDEEVGMGEIDNRIQIPDEPQPEKEKKTEAIRQFFQ 549
+E E I R EE + R+Q D + + R+
Sbjct: 79 RLTQEPESIRKWR---------EEQRK---------RLQELDA---ASKVMEQEWRE--- 114
Query: 550 KLAGDDMEVDWMELKDILDYAMRNETKTTTE 580
A D+E +W ++E +
Sbjct: 115 -KAKKDLE-EW--------NQRQSEQVEKNK 135
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 32.0 bits (72), Expect = 0.44
Identities = 8/53 (15%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 652 DRSGKLGFEEFQQLWKDIRN------WKSVFKMYDQENSGYLSPFELRQALTS 698
L +E + ++ + + ++ F M D+ G L+ E+++ +
Sbjct: 74 IVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVKEIIAL 126
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 32.3 bits (73), Expect = 0.45
Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 19/103 (18%)
Query: 645 MVAMLDVDRSGKLGFEEFQQLWKDIRNW------KSVFKMYDQENSGYLSPFELRQALTS 698
+ D ++G + FE+F + + F +YD GY++ E+ + +
Sbjct: 94 LFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKA 153
Query: 699 AGYHLNN-------------HILNILAHRYSGRDARISFDDFM 728
+ H+ +D ++ D+F+
Sbjct: 154 IYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFL 196
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 33.0 bits (74), Expect = 0.47
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQ--ENSGYLSPFELR 693
R + D ++ L EE + +K + + + +++ ++ LS L
Sbjct: 43 QVDDGYARKIFRECDHSQTDSLEDEEIETFYKMLTQRAEIDRAFEEAAGSAETLSVERLV 102
Query: 694 QALTS 698
L
Sbjct: 103 TFLQH 107
Score = 31.8 bits (71), Expect = 0.98
Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Query: 643 RSMVAMLDVDRSGKLGFEEFQQLWKDI------RNWKSVFKMYDQENSGYLSPFELRQAL 696
S + D ++ K+ F+E + K++ + +F+ D + L E+
Sbjct: 14 HSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETFY 73
Query: 697 TSAGYHLNNHILNILAHRYSGRDARISFDDFM 728
I +G +S + +
Sbjct: 74 KMLTQR--AEIDRAF-EEAAGSAETLSVERLV 102
Score = 31.4 bits (70), Expect = 1.4
Identities = 11/89 (12%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
Query: 672 W-KSVFKMYDQENSGYLSPFELRQALTSAGYHLNN-HILNILAHRYSGRDARISFDDFMM 729
W S + D+ ++ EL+ L +++ + I + + ++
Sbjct: 12 WIHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIET 71
Query: 730 CAVRLKTMIDLFKARDPSSTNKATFTLEE 758
L ++ +A + ++ + T ++E
Sbjct: 72 FYKMLTQRAEIDRAFEEAAGSAETLSVER 100
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.5 bits (74), Expect = 0.64
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 27/123 (21%)
Query: 123 DFTGGVSEMYELNEAPSNLWQILLK------------AHERSSLMGCSIEPDPSVLEMQT 170
D GG+ + EL E + L + L++ A E + G S + + +E+Q
Sbjct: 726 DLNGGLQFVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQ- 784
Query: 171 PQGLVKGHAYSITRIKYV-DISTPNTSGKIPLIRM--------RNPWGN-----EAEWNG 216
P+ ++ + K V I+ G + L R+ PWG+ E E G
Sbjct: 785 PRANIQLDFPELKPYKQVKQIAPAELEGLLDLERVIVVTGFAEVGPWGSARTRWEMEAFG 844
Query: 217 AWS 219
+S
Sbjct: 845 EFS 847
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 31.9 bits (72), Expect = 0.69
Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 19/117 (16%)
Query: 645 MVAMLDVDRSGKLGFEEF----QQLWKDIRNWK--SVFKMYDQENSGYLSPFELRQALTS 698
+ D D +G + FE+F L + + K F +YD G ++ E+ + S
Sbjct: 134 LFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKS 193
Query: 699 AGYHLNNHILNILAHRY-------------SGRDARISFDDFMMCAVRLKTMIDLFK 742
+ H IL +D ++ D+F+ + + +++ +
Sbjct: 194 IYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMNSMQ 250
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 31.1 bits (70), Expect = 0.69
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 676 FKMYDQENSGYLSPFELRQALT 697
FKM+D + + L EL A+T
Sbjct: 74 FKMHDYDGNNLLDGLELSTAIT 95
Score = 29.6 bits (66), Expect = 2.3
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 18/67 (26%)
Query: 648 MLDVDRSGKLGFEEFQQLWKDIRNWKS------------------VFKMYDQENSGYLSP 689
M D D + L E + + V + D+ N GY+
Sbjct: 76 MHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDY 135
Query: 690 FELRQAL 696
E ++L
Sbjct: 136 AEFAKSL 142
>1gyh_A Arabinan endo-1,5-alpha-L-arabinosidase A; arabinanase, hydrolase,
propeller, catalysis, pseudomonas; 1.89A {Cellvibrio
cellulosa} SCOP: b.67.2.1 PDB: 1gyd_B 1gye_B*
Length = 318
Score = 32.0 bits (73), Expect = 0.72
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 206 NPWGNEAEWNGAWSDKSQEWRFIPDHEKREL---GLTFDDDGEFWMSYKDFLKYFSRLEI 262
NP + W DK +P + + DD G+ WMS+ F + L++
Sbjct: 101 NPASPD----YRWEDKGIVIESVPQRDLWNAIAPAIIADDHGQVWMSFGSF---WGGLKL 153
Query: 263 CNLSPD 268
L+ D
Sbjct: 154 FKLNDD 159
Score = 31.2 bits (71), Expect = 1.2
Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 25/144 (17%)
Query: 243 DGEFWMSYKDFLKYFSRLEICNLSPDSLIEDAMSRDRGKKWEMSVYEGEWVRGVTAGGSQ 302
G F++ Y+S S I +++ +E + + +
Sbjct: 73 KGLFYL-------YYS--VSAFGKNTSAIGVTVNKTLNPASPDYRWEDKGIVIESVPQRD 123
Query: 303 EWRFI-PDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEICNLSPDSLIEDAMSRDRGKK 361
W I P + DD G+ WMS+ F + L++ L+ D ++
Sbjct: 124 LWNAIAPA-------IIADDHGQVWMSFGSF---WGGLKLFKLND-----DLTRPAEPQE 168
Query: 362 WEMSVYEGEWVRGVTAGGCRNYLE 385
W V + +E
Sbjct: 169 WHSIAKLERSVLMDDSQAGSAQIE 192
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 31.0 bits (70), Expect = 0.97
Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 19/126 (15%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNW------KSVFKMYDQENSGYLSP 689
G +D + + D D +G + FEEF + F++YD + GY++
Sbjct: 59 GSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITF 118
Query: 690 FELRQALTSAGY-------------HLNNHILNILAHRYSGRDARISFDDFMMCAVRLKT 736
E+ + S + I D I+ D+F + +
Sbjct: 119 DEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKVDPS 178
Query: 737 MIDLFK 742
+I
Sbjct: 179 IIGALN 184
Score = 29.4 bits (66), Expect = 3.3
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 639 KDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYD 680
+ + + ++D + G + +EF++ K + +YD
Sbjct: 146 EMRVKKIFKLMDKNEDGYITLDEFREGSKVDPSIIGALNLYD 187
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 30.9 bits (70), Expect = 1.0
Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 19/103 (18%)
Query: 645 MVAMLDVDRSGKLGFEEFQQLWKDIRN------WKSVFKMYDQENSGYLSPFELRQALTS 698
+ D ++G + FE+F + + F +YD GY++ E+ + +
Sbjct: 61 LFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKA 120
Query: 699 AGYHLNN-------------HILNILAHRYSGRDARISFDDFM 728
+ H+ +D ++ D+F+
Sbjct: 121 IYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFL 163
Score = 28.2 bits (63), Expect = 7.2
Identities = 5/42 (11%), Positives = 17/42 (40%)
Query: 639 KDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYD 680
+ +D ++ G + +EF + ++ N +++
Sbjct: 139 RQHVDVFFQKMDKNKDGIVTLDEFLESXQEDDNIMRSLQLFQ 180
>1uv4_A Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hydrolase,
propeller, catalysis; 1.50A {Bacillus subtilis} SCOP:
b.67.2.1
Length = 293
Score = 31.5 bits (72), Expect = 1.1
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 12/64 (18%)
Query: 289 EGEW---VRGVTAGGSQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEICNLS 345
G W + + S + I D LTFD DG W+++ F +S +++ L
Sbjct: 111 SGGWKDEGLVIRSTSSNNYNAI-DP-----ELTFDKDGNPWLAFGSF---WSGIKLTKLD 161
Query: 346 PDSL 349
++
Sbjct: 162 KSTM 165
Score = 30.3 bits (69), Expect = 2.0
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 237 GLTFDDDGEFWMSYKDFLKYFSRLEICNLSPDSL 270
LTFD DG W+++ F +S +++ L ++
Sbjct: 135 ELTFDKDGNPWLAFGSF---WSGIKLTKLDKSTM 165
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 28.6 bits (64), Expect = 2.3
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 628 ETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
E + G KD ++ LD + ++ F EF
Sbjct: 40 ELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVF 77
>3cu9_A Intracellular arabinanase; glycosyl hydrolase, high resolution,
beta-prope geobacillus stearothermophilus, hydrolase;
HET: GOL; 1.06A {Geobacillus stearothermophilus} PDB:
3d61_A* 3d60_A 3d5y_A 3d5z_A* 1wl7_A
Length = 314
Score = 30.0 bits (68), Expect = 2.5
Identities = 8/33 (24%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 238 LTFDDDGEFWMSYKDFLKYFSRLEICNLSPDSL 270
+ FD +G+ W+S+ F +S +++ L +++
Sbjct: 149 VVFDQEGQPWLSFGSF---WSGIQLIQLDTETM 178
Score = 30.0 bits (68), Expect = 2.5
Identities = 8/33 (24%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 317 LTFDDDGEFWMSYKDFLKYFSRLEICNLSPDSL 349
+ FD +G+ W+S+ F +S +++ L +++
Sbjct: 149 VVFDQEGQPWLSFGSF---WSGIQLIQLDTETM 178
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 28.2 bits (63), Expect = 2.7
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEF 662
G + + + D D G L +EF
Sbjct: 41 GLPDLILGKIWDLADTDGKGVLSKQEF 67
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like
membrane protein, mitochondrial ribosome, respir chain
biogenesis; 2.10A {Saccharomyces cerevisiae}
Length = 249
Score = 29.7 bits (66), Expect = 2.8
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 9/94 (9%)
Query: 478 KLPPGVYCIVPSTFEPNEEGEFILRVFSEHKNNMEENDEEVGMGEIDNRIQIPDEPQPEK 537
KL P ++PST+E ++ + E + E + E + E
Sbjct: 1 KLFPN---LLPSTYESGKDKQAKRNKLIEIRKKTSEF-----LHETLEESNLITYNTIEN 52
Query: 538 EKKTEAIRQFFQKL-AGDDMEVDWMELKDILDYA 570
+K + FF+KL + + ++ + +I A
Sbjct: 53 AEKKQKFLNFFRKLYSAKEGKIMTFQHDEISAIA 86
>2oy7_A Outer surface protein A; beta-sheet, membrane protein; 1.55A
{Borrelia burgdorferi} PDB: 2oy8_A 3cka_A* 3ec5_A*
2hkd_A* 3eex_A 2fkg_A 2af5_A
Length = 320
Score = 30.0 bits (66), Expect = 2.8
Identities = 37/218 (16%), Positives = 63/218 (28%), Gaps = 16/218 (7%)
Query: 216 GAWSDKSQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEICNLSPDSLIEDAM 275
G +D S+ I D + F DG +S K K S L E +
Sbjct: 56 GVKADASKVKLTISDDLGQTTLEVFKSDGSTLVSKKVTSKDKSSTYEKFNEKGELSEKYI 115
Query: 276 SRDRGKKWEMSVYEGEWVRGVTAGGSQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLKY 335
+R E G ++I +K F++ GE
Sbjct: 116 TRADKSSTYEKFNE---------KGELSEKYITRADKSSTYEKFNEKGEL-SEKYITRAD 165
Query: 336 FSRLEICNLSPDSLIEDAMSRDRGKKWEMSVYEGEWVRGVTAGGCRNYLETFWCNPQFKI 395
S + E ++R G + E + + + LE + +
Sbjct: 166 KSSTYEKFNEKGEVSEKYITRADGTRLEYTGIKSDGSGKAKEVLKGYVLEGTLTAEKTTL 225
Query: 396 TLTE-----VDENDEDGKCTVIIGLMQKNRRAQKKTGA 428
+ E + G+ +V + + A KKT A
Sbjct: 226 VVKEGTVTLSKNISKSGEVSVELN-DTDSSAATKKTAA 262
>3p2n_A 3,6-anhydro-alpha-L-galactosidase; 5-bladed beta-propeller,
glycoside hydrolase family GH117,
agaro-oligosaccharides, CARB hydrolase; 1.95A {Zobellia
galactanivorans}
Length = 408
Score = 30.2 bits (67), Expect = 3.1
Identities = 20/169 (11%), Positives = 42/169 (24%), Gaps = 12/169 (7%)
Query: 208 WGNEAEWNGAWSDK-SQEWRFIPDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEICNLS 266
+ W G D+ + + D K G+F++ YK I
Sbjct: 223 PADNGVWKGEEQDRFAVIKKGDFDSHKVHDPCIIPYKGKFYLYYKG---EQMGEAITFGG 279
Query: 267 PDSLIEDAMSRDRGKKWEMSVYEGEWVRGVTAG----GSQEWRFIPDHEKRELGLTFDDD 322
A++ + + S Y G I + + + D
Sbjct: 280 RQIRHGVAIADNPKGPYVKSPYNPISNSGHEICVWPYNGGIASLITTDGPEKNTIQWAPD 339
Query: 323 GEFWMSYKDFLKYFSRLEICNLSPDSLIEDAMSRDRGKKWEMSVYEGEW 371
G + + L+ + +E +W ++
Sbjct: 340 GINFEIKSVIPGVNA--HAIGLNRTADVEKEP--TEILRWGLTHIYNNG 384
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 27.9 bits (62), Expect = 3.8
Identities = 6/38 (15%), Positives = 17/38 (44%)
Query: 628 ETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
E + + + +++ LD +R ++ F+E+
Sbjct: 41 ELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVF 78
>2x8s_A Endo-alpha-1,5-L-arabinanase; hydrolase; HET: AHR; 1.50A {Bacillus
subtilis} PDB: 2x8f_A 2x8t_A 3lv4_A
Length = 470
Score = 29.6 bits (66), Expect = 4.4
Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 30/140 (21%)
Query: 243 DGEFWMSYKDFLKYFSRLEICNLSPDSLIEDAMS-------RDRGKKWEMSVYEGEWVRG 295
DG+++M Y++ SP S + A++ +++G + S EG G
Sbjct: 109 DGKYYM-------YYNACR--GDSPRSAMGVAVADNIEGPYKNKGI-FLKSGMEGTSSDG 158
Query: 296 VTAGGSQEWRFI-PDHEKRELGLTFDDDGEFWMSYKDFLKYFSRLEICNLSPD--SLIED 352
++ + P FD DG+ WM Y + + I ++P +
Sbjct: 159 TPYDATKHPNVVAPH-------TFFDKDGKLWMVYGSY---SGGIFILEMNPKTGFPLPG 208
Query: 353 AMSRDRGKKWEMSVYEGEWV 372
+ S EG +V
Sbjct: 209 QGYGKKLLGGNHSRIEGPYV 228
Score = 28.8 bits (64), Expect = 8.5
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 238 LTFDDDGEFWMSYKDFLKYFSRLEICNLSPD--SLIEDAMSRDRGKKWEMSVYEGEWV 293
FD DG+ WM Y + + I ++P + + S EG +V
Sbjct: 174 TFFDKDGKLWMVYGSY---SGGIFILEMNPKTGFPLPGQGYGKKLLGGNHSRIEGPYV 228
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 27.9 bits (62), Expect = 4.4
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 635 GGFSKDVCR--SMVAMLDVDRSGKLGFEEFQQL 665
KDV + LDV++ +L F E+ +L
Sbjct: 55 PHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRL 87
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 29.5 bits (67), Expect = 4.6
Identities = 5/51 (9%), Positives = 14/51 (27%), Gaps = 1/51 (1%)
Query: 639 KDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSP 689
K +V + + ++ D + K ++ + P
Sbjct: 346 KAALTLLVEVAQ-EMQKAGRLPCRKEWVADCQQRKRTLLRKTHFDNVPVKP 395
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 27.9 bits (62), Expect = 4.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 628 ETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
E T+ V M+ LD+D G+L F+EF L
Sbjct: 44 ELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNL 81
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 27.4 bits (61), Expect = 5.1
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 628 ETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
E + + D ++ LD + G++ F+EF L
Sbjct: 40 ELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVL 77
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 27.8 bits (62), Expect = 5.3
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 636 GFSKDVCRSMVAMLDVDRSGKLGFEEF 662
D+ + + D+D G L +EF
Sbjct: 44 KLPVDILGRVWELSDIDHDGMLDRDEF 70
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 27.4 bits (61), Expect = 5.9
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 628 ETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
E T + K V + LD ++ ++ F+EF L
Sbjct: 43 ELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISL 80
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 27.2 bits (60), Expect = 6.9
Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 26/115 (22%)
Query: 658 GFEEFQQLWKDIR-------NWKSVFKMYDQENSGYLSPFELRQALTSAGYHLNNHILNI 710
G +++W+++ N K+ F ++D + G L EL T +
Sbjct: 1 GSHMLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKV------- 53
Query: 711 LAHRYSGRDARISFDDFMMCAVRLKTMID-LFKARDPSSTNK-ATFTLEEWVENT 763
D + DD M + + K D TN+ TLEE++ +T
Sbjct: 54 -------YDPKNEEDDMREMEEERLRMREHVMKNVD---TNQDRLVTLEEFLAST 98
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A
{Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 2dji_A* 1v5f_A* 1v5g_A*
Length = 590
Score = 29.1 bits (66), Expect = 7.4
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 20/87 (22%)
Query: 639 KDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQENSGYLSPFELRQALTS 698
++ +D + K+I NW+ M + + G L +++ A+
Sbjct: 320 ALAIDEILNKVDAVEES----AWWTANLKNIANWREYINMLETKEEGDLQFYQVYNAI-- 373
Query: 699 AGYHLNNHILNILAHRYSGRDARISFD 725
+ ++ DA S D
Sbjct: 374 --------------NNHADEDAIYSID 386
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair,
alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: d.113.1.3
Length = 155
Score = 27.8 bits (62), Expect = 7.6
Identities = 5/37 (13%), Positives = 8/37 (21%), Gaps = 1/37 (2%)
Query: 282 KWEMSVYEGEWVRGVTAGG-SQEWRFIPDHEKRELGL 317
K VY R++ E +
Sbjct: 99 KLTYQVYGLALEGQTPVTTVPPGARWLTQEEFHTAAV 135
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 27.1 bits (60), Expect = 7.7
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 628 ETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
E ++ ++ LD + G++ F+E+ L
Sbjct: 43 ELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTL 80
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 27.1 bits (60), Expect = 7.7
Identities = 4/27 (14%), Positives = 14/27 (51%)
Query: 639 KDVCRSMVAMLDVDRSGKLGFEEFQQL 665
++ + ++ LD + ++ F+E+
Sbjct: 53 EEGLKKLMGSLDENSDQQVDFQEYAVF 79
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase,
thiamin diphosphate, lyase; HET: PGE HE3; 2.00A
{Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 1ozg_A* 1ozf_A*
Length = 566
Score = 28.6 bits (65), Expect = 7.8
Identities = 6/51 (11%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 640 DVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKM-YDQENSGYLSP 689
D+ ++ + + + ++ +D ++ + + Q N L P
Sbjct: 323 DIAGTLNKLAQNIDHRLVLSPQAAEILRDRQHQRELLDRRGAQLNQFALHP 373
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 26.5 bits (59), Expect = 8.1
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 667 KDIRNWKSVFKMYDQE--NSGYLSPFELRQALTS--AGYHLNNHIL-NILAHRYSGRDAR 721
K KS+F+ Y + + LS EL+Q + + L ++ D
Sbjct: 4 KSPAELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGE 63
Query: 722 ISFDDFMMCAVRL 734
+SF++F + ++
Sbjct: 64 VSFEEFQVLVKKI 76
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 27.1 bits (60), Expect = 8.3
Identities = 6/38 (15%), Positives = 17/38 (44%)
Query: 628 ETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
E + + + +++ LD +R ++ F+E+
Sbjct: 44 ELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVF 81
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 27.0 bits (60), Expect = 8.4
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 627 LETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
L K G + ++ LD + ++ F+E+
Sbjct: 37 LIKKELCLGEMKESSIDDLMKSLDKNSDQEIDFKEYSVF 75
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 27.2 bits (60), Expect = 9.3
Identities = 6/38 (15%), Positives = 17/38 (44%)
Query: 628 ETKTTTEGGFSKDVCRSMVAMLDVDRSGKLGFEEFQQL 665
E + + + +++ LD +R ++ F+E+
Sbjct: 53 ELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVF 90
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 28.8 bits (63), Expect = 9.5
Identities = 6/60 (10%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 637 FSKDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKMYDQ--ENSGYLSPFELRQ 694
+ + D F+ F + + + + ++ + +N G ++ R
Sbjct: 193 KALEKIGWPSGKNDAIDLKAFDFDTFFKFYLALLERSEIEGIFKELSKNKGNITTVMFRD 252
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains;
HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Length = 589
Score = 28.7 bits (65), Expect = 9.8
Identities = 6/52 (11%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 639 KDVCRSMVAMLDVDRSGKLGFEEFQQLWKDIRNWKSVFKM-YDQENSGYLSP 689
K ++ +L K + ++ ++ +++ + ++ SG P
Sbjct: 323 KTFMEQLIEVLPGTSGFKAVRYQERENFRQATEFRAAWDGWVREQESGDGMP 374
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.423
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,479,213
Number of extensions: 771578
Number of successful extensions: 2471
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2239
Number of HSP's successfully gapped: 350
Length of query: 766
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 665
Effective length of database: 3,881,772
Effective search space: 2581378380
Effective search space used: 2581378380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)