BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14119
         (90 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
          Cationdependent O-Methyltransferase From The
          Cyanobacterium Synechocystis Sp. Strain Pcc 6803
          Length = 232

 Score = 26.6 bits (57), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 1  MKICGPKLSLCGLVISAWGIVQLVLMGFFYSVRSVALAEDLP 42
          M+I   +    GL+IS  G  Q++ +G F    ++A+A  LP
Sbjct: 54 MQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLP 95


>pdb|3TP4|A Chain A, Crystal Structure Of Engineered Protein At The Resolution
           1.98a, Northeast Structural Genomics Consortium Target
           Or128
 pdb|3TP4|B Chain B, Crystal Structure Of Engineered Protein At The Resolution
           1.98a, Northeast Structural Genomics Consortium Target
           Or128
          Length = 475

 Score = 26.2 bits (56), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 19  GIVQLVLMGFFYSVRSVALAEDLPGAEHHYASAKEFYAAADKGYTLCKSSKR 70
           G+   V  G FY      L   LPG  HH     E  A  D    L  +S+R
Sbjct: 113 GVENFVTGGSFYDTSGDTLRAVLPGGSHH----AELVAYLDDIAELADASRR 160


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,665,907
Number of Sequences: 62578
Number of extensions: 81433
Number of successful extensions: 210
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 2
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)