BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14119
(90 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8MSF5|RNK_DROME Ribonuclease kappa OS=Drosophila melanogaster GN=CG40127 PE=3
SV=1
Length = 95
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 1 MKICGPKLSLCGLVISAWGIVQLVLMGFFYSVRSVALAEDLPGAEHHYASAKEFYAAADK 60
MKICGPKLSLCGL+IS WGIVQLVLMG F+ + SVAL EDLP E Y S ++FYAAA++
Sbjct: 1 MKICGPKLSLCGLIISVWGIVQLVLMGLFFYINSVALIEDLP-LEEEYHSLEDFYAAANR 59
Query: 61 GYT 63
Y
Sbjct: 60 AYN 62
>sp|Q7Z0Q2|RNKB_CERCA Ribonuclease kappa-B OS=Ceratitis capitata PE=3 SV=1
Length = 95
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 1 MKICGPKLSLCGLVISAWGIVQLVLMGFFYSVRSVALAEDLPGAEHHYASAKEFYAAADK 60
MKICGPKLSLCGL+IS WGI+QLVLMG F+ + SVAL EDLP + + S +EFY AA
Sbjct: 1 MKICGPKLSLCGLIISVWGIIQLVLMGLFFYINSVALIEDLP-IDEEFNSVEEFYTAATS 59
Query: 61 GYT 63
Y
Sbjct: 60 AYN 62
>sp|Q3ZC23|RNK_BOVIN Ribonuclease kappa OS=Bos taurus GN=RNASEK PE=3 SV=1
Length = 98
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 4 CGPKLSLCGLVISAWGIVQLVLMGFFYSVRSVALAEDLPGAEHHYASAKE 53
CGPKL+ CG+V+SAWG++ L+++G F++V S L ED+P E + + +
Sbjct: 7 CGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQ 56
>sp|Q8K3C0|RNK_MOUSE Ribonuclease kappa OS=Mus musculus GN=Rnasek PE=3 SV=1
Length = 98
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 4 CGPKLSLCGLVISAWGIVQLVLMGFFYSVRSVALAEDLPGAEHHYASAKE 53
CGPKL+ CG+V+SAWG++ L+++G F++V S L ED+P E + + +
Sbjct: 7 CGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQ 56
>sp|Q6P5S7|RNK_HUMAN Ribonuclease kappa OS=Homo sapiens GN=RNASEK PE=2 SV=1
Length = 98
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 4 CGPKLSLCGLVISAWGIVQLVLMGFFYSVRSVALAEDLPGAEHHYASAKE 53
CGPKL+ CG+V+SAWG++ L+++G F++V S L ED+P E + + +
Sbjct: 7 CGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQ 56
>sp|A2VDC7|RNKA_XENLA Ribonuclease kappa-A OS=Xenopus laevis GN=rnasek-a PE=3 SV=1
Length = 101
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 32/43 (74%)
Query: 4 CGPKLSLCGLVISAWGIVQLVLMGFFYSVRSVALAEDLPGAEH 46
CGPKL+ CG+VIS WG++ L+L+G F++V S L ED+P E
Sbjct: 7 CGPKLAACGIVISVWGVIMLILLGVFFNVHSAVLIEDVPFTEE 49
>sp|Q566G2|RNKB_XENLA Ribonuclease kappa-B OS=Xenopus laevis GN=rnasek-b PE=3 SV=1
Length = 101
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 32/42 (76%)
Query: 4 CGPKLSLCGLVISAWGIVQLVLMGFFYSVRSVALAEDLPGAE 45
CGPKL+ CG+V+S WG++ LVL+G F++V S L ED+P E
Sbjct: 7 CGPKLAACGIVLSVWGVIMLVLLGVFFNVHSAVLIEDVPFTE 48
>sp|Q0P442|RNKB_DANRE Ribonuclease kappa-B OS=Danio rerio GN=rnasekb PE=3 SV=1
Length = 101
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 4 CGPKLSLCGLVISAWGIVQLVLMGFFYSVRSVALAEDLPGAEHHYASAKE 53
CGPKL+ CG+V+S WG++ L ++G F+S +S L ED+P E + K+
Sbjct: 7 CGPKLAACGIVLSVWGVIMLSMLGIFFSAKSAVLIEDVPFTEEDIRNDKD 56
>sp|Q0P467|RNKA_DANRE Ribonuclease kappa-A OS=Danio rerio GN=rnaseka PE=2 SV=1
Length = 101
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 4 CGPKLSLCGLVISAWGIVQLVLMGFFYSVRSVALAEDLPGAEHHYAS 50
CGPKL+ CGLV+S WG++ L L+G F++ S L ED+P E S
Sbjct: 7 CGPKLAACGLVLSIWGVIMLALLGIFFTTHSAILIEDVPLTEEDLHS 53
>sp|Q9NDV2|RNKA_CERCA Ribonuclease kappa-A OS=Ceratitis capitata PE=2 SV=1
Length = 138
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 16 SAWGIVQLVLM-GFFYSVRSVALAEDLPGAEHHYASAKEFYAAADKGYT 63
S WGI+QLVLM G F+ + SVAL EDLP E + S +EFY AA Y
Sbjct: 73 SVWGIIQLVLMMGLFFYINSVALIEDLPIDE-EFNSVEEFYTAATSAYN 120
>sp|C1F8M1|PNP_ACIC5 Polyribonucleotide nucleotidyltransferase OS=Acidobacterium
capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)
GN=pnp PE=3 SV=1
Length = 806
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 25/61 (40%)
Query: 3 ICGPKLSLCGLVISAWGIVQLVLMGFFYSVRSVALAEDLPGAEHHYASAKEFYAAADKGY 62
+CG L+L I G V V MG A+ D+ GAE HY A KG
Sbjct: 445 VCGASLALMDAGIPLKGAVAGVAMGLVKEGDEYAILTDIAGAEDHYGDMDFKVAGTRKGI 504
Query: 63 T 63
T
Sbjct: 505 T 505
>sp|Q7VIL0|PNP_HELHP Polyribonucleotide nucleotidyltransferase OS=Helicobacter hepaticus
(strain ATCC 51449 / 3B1) GN=pnp PE=3 SV=1
Length = 709
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 3 ICGPKLSLCGLVISAWGIVQLVLMGFFYSVRSVALAEDLPGAEHH 47
+CG L+LC I ++ V MG A+ D+ G E H
Sbjct: 448 VCGGSLALCACGIKVESLIAGVAMGLVTQDEQCAILTDISGLEDH 492
>sp|Q1IQ54|PNP_KORVE Polyribonucleotide nucleotidyltransferase OS=Koribacter versatilis
(strain Ellin345) GN=pnp PE=3 SV=1
Length = 815
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 24/61 (39%)
Query: 3 ICGPKLSLCGLVISAWGIVQLVLMGFFYSVRSVALAEDLPGAEHHYASAKEFYAAADKGY 62
ICG LSL + V + MG A+ D+ GAE HY A +G
Sbjct: 446 ICGGSLSLMDAGVPLKAPVAGIAMGLVKEGDDYAILTDIAGAEDHYGDMDFKVAGTTQGI 505
Query: 63 T 63
T
Sbjct: 506 T 506
>sp|Q01NW3|PNP_SOLUE Polyribonucleotide nucleotidyltransferase OS=Solibacter usitatus
(strain Ellin6076) GN=pnp PE=3 SV=1
Length = 701
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 24/61 (39%)
Query: 3 ICGPKLSLCGLVISAWGIVQLVLMGFFYSVRSVALAEDLPGAEHHYASAKEFYAAADKGY 62
ICG L+L + V V MG + A+ D+ GAE HY A G
Sbjct: 440 ICGGSLALMQAGVPMTAHVGGVAMGLVMEGKDYAILTDIAGAEDHYGDMDFKVAGTRDGI 499
Query: 63 T 63
T
Sbjct: 500 T 500
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,487,112
Number of Sequences: 539616
Number of extensions: 1000612
Number of successful extensions: 3308
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3288
Number of HSP's gapped (non-prelim): 16
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)