Query psy14119
Match_columns 90
No_of_seqs 71 out of 73
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 20:01:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14119hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10853 DUF2650: Protein of u 96.2 0.0051 1.1E-07 36.3 2.7 28 2-29 11-38 (38)
2 PF01788 PsbJ: PsbJ; InterPro 68.8 8.6 0.00019 23.1 3.1 19 14-32 13-31 (40)
3 PF05082 Rop-like: Rop-like; 60.4 10 0.00023 24.6 2.6 26 36-64 27-52 (66)
4 PF11084 DUF2621: Protein of u 55.7 24 0.00052 26.2 4.1 33 10-44 5-39 (141)
5 PF08285 DPM3: Dolichol-phosph 52.5 29 0.00063 23.4 3.9 53 10-65 35-87 (91)
6 PF06480 FtsH_ext: FtsH Extrac 48.8 7.5 0.00016 24.0 0.5 19 16-34 2-20 (110)
7 PF05486 SRP9-21: Signal recog 48.3 16 0.00035 23.8 2.1 25 48-72 2-26 (79)
8 PF07503 zf-HYPF: HypF finger; 46.2 7 0.00015 22.3 0.1 10 1-10 24-33 (35)
9 CHL00108 psbJ photosystem II p 45.9 3.5 7.6E-05 24.8 -1.2 15 18-32 17-31 (40)
10 PRK02565 photosystem II reacti 43.3 5.3 0.00011 23.9 -0.7 16 17-32 15-30 (39)
11 PF11638 DnaA_N: DnaA N-termin 38.6 24 0.00051 20.9 1.6 23 51-73 4-26 (65)
12 KOG3707|consensus 35.9 22 0.00048 32.6 1.6 40 19-61 410-449 (844)
13 PF14354 Lar_restr_allev: Rest 35.6 17 0.00036 21.5 0.6 6 1-6 6-11 (61)
14 COG5420 Uncharacterized conser 33.2 37 0.0008 22.5 2.0 27 35-64 30-56 (71)
15 PF08163 NUC194: NUC194 domain 33.2 22 0.00047 29.5 1.1 18 56-73 122-139 (394)
16 KOG1513|consensus 31.5 24 0.00052 33.5 1.1 28 10-37 1237-1266(1300)
17 PF05545 FixQ: Cbb3-type cytoc 30.5 82 0.0018 18.3 3.0 20 15-34 11-31 (49)
18 PF02419 PsbL: PsbL protein; 30.5 58 0.0013 19.3 2.3 16 17-32 18-33 (37)
19 PF10958 DUF2759: Protein of u 29.6 54 0.0012 20.6 2.2 26 13-38 6-35 (52)
20 COG0109 CyoE Polyprenyltransfe 28.1 81 0.0018 25.8 3.5 24 9-32 102-136 (304)
21 PF08756 YfkB: YfkB-like domai 26.6 58 0.0013 24.5 2.3 38 37-79 6-43 (153)
22 PF05814 DUF843: Baculovirus p 26.5 1.6E+02 0.0034 20.1 4.2 48 13-64 28-75 (83)
23 PF08362 TetR_C_3: YcdC-like p 26.5 57 0.0012 23.3 2.2 42 11-55 91-132 (143)
24 CHL00038 psbL photosystem II p 25.5 77 0.0017 18.8 2.2 16 17-32 19-34 (38)
25 PRK00753 psbL photosystem II r 24.8 79 0.0017 18.9 2.2 16 17-32 20-35 (39)
26 PF07589 VPEP: PEP-CTERM motif 24.2 1.1E+02 0.0023 16.1 2.4 15 16-30 6-20 (25)
27 COG4476 Uncharacterized protei 24.0 48 0.001 22.9 1.3 26 40-65 8-33 (90)
28 KOG3465|consensus 23.6 63 0.0014 22.2 1.8 24 48-71 4-27 (86)
29 PF03969 AFG1_ATPase: AFG1-lik 22.5 81 0.0018 25.6 2.6 32 34-65 287-319 (362)
30 PF00113 Enolase_C: Enolase, C 21.5 59 0.0013 26.0 1.6 24 35-59 151-174 (295)
31 PF09779 Ima1_N: Ima1 N-termin 21.2 73 0.0016 22.3 1.8 36 32-69 87-127 (131)
32 PF14276 DUF4363: Domain of un 20.3 69 0.0015 21.3 1.5 23 20-42 6-29 (121)
No 1
>PF10853 DUF2650: Protein of unknown function (DUF2650); InterPro: IPR022559 This region is found in proteins with unknown function in metazoa.
Probab=96.23 E-value=0.0051 Score=36.32 Aligned_cols=28 Identities=32% Similarity=0.652 Sum_probs=26.2
Q ss_pred cccCccchhHHHHHHHHHHHHHHHHHHH
Q psy14119 2 KICGPKLSLCGLVISAWGIVQLVLMGFF 29 (90)
Q Consensus 2 ~~CGPKcS~CclvLSvWGiImL~lLGiF 29 (90)
+.||.+-+-||.-|-.|.+++|+++|++
T Consensus 11 ~CCg~~~~eCCf~lq~Wv~v~l~v~~v~ 38 (38)
T PF10853_consen 11 KCCGDLNKECCFRLQIWVIVLLAVLGVC 38 (38)
T ss_pred ECCCCChHhHHHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999974
No 2
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=68.76 E-value=8.6 Score=23.10 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy14119 14 VISAWGIVQLVLMGFFYSV 32 (90)
Q Consensus 14 vLSvWGiImL~lLGiFF~v 32 (90)
|--+=|+.-+.++|+|||=
T Consensus 13 Vgtv~G~~vi~lvglFfYG 31 (40)
T PF01788_consen 13 VGTVAGIAVIGLVGLFFYG 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHheec
Confidence 4445688899999999984
No 3
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=60.35 E-value=10 Score=24.65 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=17.2
Q ss_pred ecccCCCCCccccccHHHHHHHHHHHhhh
Q psy14119 36 ALAEDLPGAEHHYASAKEFYAAADKGYTL 64 (90)
Q Consensus 36 aLiEDLP~~ee~~~s~~~f~~~~~~~Y~q 64 (90)
-|.||||. +|.++-+--++.+++|.+
T Consensus 27 DLaEdLP~---~w~~i~~vA~~ty~a~~~ 52 (66)
T PF05082_consen 27 DLAEDLPT---NWEEIPEVAQKTYDAYAE 52 (66)
T ss_dssp HHHHCTTT---TGGGHHHHHHHHHHHHHH
T ss_pred HHHHccch---hHHHHHHHHHHHHHHHHH
Confidence 37899997 666655555666666654
No 4
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=55.73 E-value=24 Score=26.16 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHH--HHHhhcceecccCCCCC
Q psy14119 10 LCGLVISAWGIVQLVLMG--FFYSVRSVALAEDLPGA 44 (90)
Q Consensus 10 ~CclvLSvWGiImL~lLG--iFF~v~SvaLiEDLP~~ 44 (90)
.+-.++-.|+++|+++|+ +||-.+ -++--+|.+
T Consensus 5 wFm~fI~~W~~vli~l~~IGGfFMFR--KFLK~lPKe 39 (141)
T PF11084_consen 5 WFMWFILFWVVVLIGLMAIGGFFMFR--KFLKRLPKE 39 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHhCCcc
Confidence 455688899999999884 566655 467788863
No 5
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=52.50 E-value=29 Score=23.39 Aligned_cols=53 Identities=13% Similarity=0.021 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcceecccCCCCCccccccHHHHHHHHHHHhhhh
Q psy14119 10 LCGLVISAWGIVQLVLMGFFYSVRSVALAEDLPGAEHHYASAKEFYAAADKGYTLC 65 (90)
Q Consensus 10 ~CclvLSvWGiImL~lLGiFF~v~SvaLiEDLP~~ee~~~s~~~f~~~~~~~Y~qv 65 (90)
..-..+-+|.++.++.-..+=-.-.|+-+.|-| |.+.++++..+++.+-+++.
T Consensus 35 ~ii~~lP~~~Lv~fG~Ysl~~lgy~v~tFnDcp---eA~~eL~~eI~eAK~dLr~k 87 (91)
T PF08285_consen 35 EIIPYLPFYALVSFGCYSLFTLGYGVATFNDCP---EAAKELQKEIKEAKADLRKK 87 (91)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhccCCCH---HHHHHHHHHHHHHHHHHHHc
Confidence 345677788888888888888888899999988 35666767777777777654
No 6
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=48.79 E-value=7.5 Score=23.98 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=0.5
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q psy14119 16 SAWGIVQLVLMGFFYSVRS 34 (90)
Q Consensus 16 SvWGiImL~lLGiFF~v~S 34 (90)
-+|-+|.+++++++++...
T Consensus 2 ~~~ili~~vi~~l~~~~~~ 20 (110)
T PF06480_consen 2 ILYILIILVILLLFNFFFF 20 (110)
T ss_dssp -----------------S-
T ss_pred cceehhHHHHHHHHHHHHh
Confidence 3688899999999888654
No 7
>PF05486 SRP9-21: Signal recognition particle 9 kDa protein (SRP9); InterPro: IPR008832 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the 9 kDa SRP9 component. Both SRP9 and SRP14 have the same (beta)-alpha-beta(3)-alpha fold. The heterodimer has pseudo two-fold symmetry and is saddle-like, consisting of a curved six-stranded beta-sheet that has four helices packed on the convex side and an exposed concave surface lined with positively charged residues. The SRP9/SRP14 heterodimer is essential for SRP RNA binding, mediating the pausing of synthesis of ribosome associated nascent polypeptides that have been engaged by the targeting domain of SRP [].; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0045900 negative regulation of translational elongation, 0048500 signal recognition particle; PDB: 1E8O_A 1RY1_C.
Probab=48.32 E-value=16 Score=23.85 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=19.7
Q ss_pred cccHHHHHHHHHHHhhhhhhccccc
Q psy14119 48 YASAKEFYAAADKGYTLCKSSKRGA 72 (90)
Q Consensus 48 ~~s~~~f~~~~~~~Y~qvAyN~~~a 72 (90)
+.++|+|.++..+.|+++--++++.
T Consensus 2 ~~~~deF~~~s~~L~~a~P~~TR~~ 26 (79)
T PF05486_consen 2 VKSWDEFIEQSEKLYEANPSTTRYS 26 (79)
T ss_dssp ESHHHHHHHHHHHHHHH-TTT-EEE
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEE
Confidence 3578999999999999998888763
No 8
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=46.16 E-value=7 Score=22.29 Aligned_cols=10 Identities=40% Similarity=0.992 Sum_probs=7.1
Q ss_pred CcccCccchh
Q psy14119 1 MKICGPKLSL 10 (90)
Q Consensus 1 ~~~CGPKcS~ 10 (90)
|.-|||+.++
T Consensus 24 C~~CGPr~~i 33 (35)
T PF07503_consen 24 CTNCGPRYSI 33 (35)
T ss_dssp BTTCC-SCCC
T ss_pred CCCCCCCEEE
Confidence 5679999875
No 9
>CHL00108 psbJ photosystem II protein J
Probab=45.89 E-value=3.5 Score=24.78 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhh
Q psy14119 18 WGIVQLVLMGFFYSV 32 (90)
Q Consensus 18 WGiImL~lLGiFF~v 32 (90)
=|+.-+.++|+|||=
T Consensus 17 ~G~~vi~~vgiFfyG 31 (40)
T CHL00108 17 AGIAVIGLLGIFFYG 31 (40)
T ss_pred hhHhHHheeeeEEee
Confidence 367778999999984
No 10
>PRK02565 photosystem II reaction center protein J; Provisional
Probab=43.30 E-value=5.3 Score=23.91 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhh
Q psy14119 17 AWGIVQLVLMGFFYSV 32 (90)
Q Consensus 17 vWGiImL~lLGiFF~v 32 (90)
+=|+--+.++|+|||=
T Consensus 15 v~G~~vi~~vgiFfyG 30 (39)
T PRK02565 15 VAGMGVIFVVGLFFYG 30 (39)
T ss_pred hhHHHHHhheeeEEee
Confidence 3467778999999984
No 11
>PF11638 DnaA_N: DnaA N-terminal domain; InterPro: IPR024633 The bacterial DnaA protein [, , ] plays an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) []. This entry represents the N-terminal domain of DnaA. This domain is monomeric in solution and has a hydrophobic cleft flanked by several negative residues on one side and positive residues on the other [].; GO: 0005524 ATP binding; PDB: 2JMP_A 2E0G_A.
Probab=38.58 E-value=24 Score=20.92 Aligned_cols=23 Identities=4% Similarity=-0.192 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhhhhhcccccc
Q psy14119 51 AKEFYAAADKGYTLCKSSKRGAR 73 (90)
Q Consensus 51 ~~~f~~~~~~~Y~qvAyN~~~a~ 73 (90)
+++..+++.+.|...+|+.|++.
T Consensus 4 W~~vl~~lk~~l~~~~f~tW~~~ 26 (65)
T PF11638_consen 4 WEKVLERLKKELSEQSFNTWFKP 26 (65)
T ss_dssp HHHHHHHHHHHTSS-HHHHTTTT
T ss_pred HHHHHHHHHHHCCHHHHHHHHHh
Confidence 56778889999999999999973
No 12
>KOG3707|consensus
Probab=35.95 E-value=22 Score=32.55 Aligned_cols=40 Identities=13% Similarity=0.054 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhcceecccCCCCCccccccHHHHHHHHHHH
Q psy14119 19 GIVQLVLMGFFYSVRSVALAEDLPGAEHHYASAKEFYAAADKG 61 (90)
Q Consensus 19 GiImL~lLGiFF~v~SvaLiEDLP~~ee~~~s~~~f~~~~~~~ 61 (90)
|.+||+=+---..-|+|+|+||..+-+| |++.|..++++.
T Consensus 410 aflmmgnLs~~lkshAVTlfevgkL~De---sldsfl~qle~v 449 (844)
T KOG3707|consen 410 AFLMMGNLSPTLKSHAVTLFEVGKLPDE---SLDSFLSQLEEV 449 (844)
T ss_pred HHHHhccCCcccccceeeeeeecccchh---hHHHHHHHHHHh
Confidence 5566655545566799999999998554 555666666555
No 13
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=35.62 E-value=17 Score=21.54 Aligned_cols=6 Identities=33% Similarity=0.999 Sum_probs=3.0
Q ss_pred CcccCc
Q psy14119 1 MKICGP 6 (90)
Q Consensus 1 ~~~CGP 6 (90)
|||||.
T Consensus 6 CPFCG~ 11 (61)
T PF14354_consen 6 CPFCGS 11 (61)
T ss_pred CCCCCC
Confidence 455553
No 14
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=33.24 E-value=37 Score=22.54 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=14.6
Q ss_pred eecccCCCCCccccccHHHHHHHHHHHhhh
Q psy14119 35 VALAEDLPGAEHHYASAKEFYAAADKGYTL 64 (90)
Q Consensus 35 vaLiEDLP~~ee~~~s~~~f~~~~~~~Y~q 64 (90)
-.|.||||. +|....+--.+..++|.+
T Consensus 30 hDLAEgLP~---~wtei~~VA~kt~~~yae 56 (71)
T COG5420 30 HDLAEGLPV---KWTEIMAVAEKTFEAYAE 56 (71)
T ss_pred HHHhccCCc---cHHHHHHHHHHHHHHHHH
Confidence 357899996 343333333444444443
No 15
>PF08163 NUC194: NUC194 domain; InterPro: IPR012582 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This is domain B in the catalytic subunit of DNA-dependent protein kinases.; GO: 0003677 DNA binding, 0004677 DNA-dependent protein kinase activity, 0005524 ATP binding, 0006303 double-strand break repair via nonhomologous end joining, 0005634 nucleus
Probab=33.22 E-value=22 Score=29.50 Aligned_cols=18 Identities=11% Similarity=-0.090 Sum_probs=15.3
Q ss_pred HHHHHHhhhhhhcccccc
Q psy14119 56 AAADKGYTLCKSSKRGAR 73 (90)
Q Consensus 56 ~~~~~~Y~qvAyN~~~a~ 73 (90)
.+.-+.|++.||||.+|.
T Consensus 122 ~e~~r~y~cAAYncl~av 139 (394)
T PF08163_consen 122 LELRRQYHCAAYNCLIAV 139 (394)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566699999999998874
No 16
>KOG1513|consensus
Probab=31.45 E-value=24 Score=33.50 Aligned_cols=28 Identities=36% Similarity=0.555 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH--Hhhcceec
Q psy14119 10 LCGLVISAWGIVQLVLMGFF--YSVRSVAL 37 (90)
Q Consensus 10 ~CclvLSvWGiImL~lLGiF--F~v~SvaL 37 (90)
+|+.+|||||.|=.+|-+.- -++|-+-+
T Consensus 1237 LsGsvLsVW~rVE~Vla~~s~sskmQIIRl 1266 (1300)
T KOG1513|consen 1237 LSGSVLSVWGRVEAVLADSSSSSKMQIIRL 1266 (1300)
T ss_pred eccchhhhhHHHHHHHhcCCCcceEEEEEE
Confidence 68999999999999887765 44444433
No 17
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=30.48 E-value=82 Score=18.27 Aligned_cols=20 Identities=15% Similarity=0.133 Sum_probs=10.7
Q ss_pred HHHHHHHHHHH-HHHHHhhcc
Q psy14119 15 ISAWGIVQLVL-MGFFYSVRS 34 (90)
Q Consensus 15 LSvWGiImL~l-LGiFF~v~S 34 (90)
=|+|.++++++ .|+.+++=+
T Consensus 11 ~~~~~v~~~~~F~gi~~w~~~ 31 (49)
T PF05545_consen 11 RSIGTVLFFVFFIGIVIWAYR 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 34455554444 377777654
No 18
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=30.47 E-value=58 Score=19.26 Aligned_cols=16 Identities=19% Similarity=0.791 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhh
Q psy14119 17 AWGIVQLVLMGFFYSV 32 (90)
Q Consensus 17 vWGiImL~lLGiFF~v 32 (90)
-||.+...++|++|..
T Consensus 18 Y~GLllifvl~vLFss 33 (37)
T PF02419_consen 18 YWGLLLIFVLAVLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4999999999999864
No 19
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=29.63 E-value=54 Score=20.60 Aligned_cols=26 Identities=19% Similarity=0.553 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHH----HHHHHHhhcceecc
Q psy14119 13 LVISAWGIVQLV----LMGFFYSVRSVALA 38 (90)
Q Consensus 13 lvLSvWGiImL~----lLGiFF~v~SvaLi 38 (90)
.++++||++.-. ++|+.|..-|++.+
T Consensus 6 tlla~~g~~rslK~KN~l~i~F~~~t~~VF 35 (52)
T PF10958_consen 6 TLLAAFGVLRSLKNKNFLGIGFALVTVAVF 35 (52)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 578999999864 78888877776653
No 20
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=28.07 E-value=81 Score=25.77 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHH-----------HHHHHHHhh
Q psy14119 9 SLCGLVISAWGIVQL-----------VLMGFFYSV 32 (90)
Q Consensus 9 S~CclvLSvWGiImL-----------~lLGiFF~v 32 (90)
-.+++++++=|+++| ++.|+|||+
T Consensus 102 l~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv 136 (304)
T COG0109 102 LAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYV 136 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888888887 678899986
No 21
>PF08756 YfkB: YfkB-like domain; InterPro: IPR014866 YfkB is adjacent to YfkA in Bacillus subtilis. In other bacterial species, it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=26.56 E-value=58 Score=24.46 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=31.8
Q ss_pred cccCCCCCccccccHHHHHHHHHHHhhhhhhccccccCCCcee
Q psy14119 37 LAEDLPGAEHHYASAKEFYAAADKGYTLCKSSKRGARGSLPFC 79 (90)
Q Consensus 37 LiEDLP~~ee~~~s~~~f~~~~~~~Y~qvAyN~~~a~g~~~~~ 79 (90)
+.++||. -|++|.++.+.+.-+----|.|.--|-|||-
T Consensus 6 FAs~L~v-----LsL~e~r~aIh~LLd~Rd~~~WMLFGTLPfy 43 (153)
T PF08756_consen 6 FASNLEV-----LSLDEMREAIHRLLDIRDPNVWMLFGTLPFY 43 (153)
T ss_pred hhhhCcc-----CCHHHHHHHHHHHHhccCCCeeEEecccccc
Confidence 4455554 5788999999999999999999999999994
No 22
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=26.53 E-value=1.6e+02 Score=20.08 Aligned_cols=48 Identities=8% Similarity=0.209 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcceecccCCCCCccccccHHHHHHHHHHHhhh
Q psy14119 13 LVISAWGIVQLVLMGFFYSVRSVALAEDLPGAEHHYASAKEFYAAADKGYTL 64 (90)
Q Consensus 13 lvLSvWGiImL~lLGiFF~v~SvaLiEDLP~~ee~~~s~~~f~~~~~~~Y~q 64 (90)
+.+-+=-+|+..+++++ |++-=.-..|+|- |+-++.+.. ++.+++++.
T Consensus 28 ~~~LilfviF~~~L~~y-y~kteS~~~dL~t--~k~K~~KKK-~~ln~afDA 75 (83)
T PF05814_consen 28 ITLLILFVIFFCVLQVY-YIKTESTPQDLQT--EKAKSIKKK-RDLNDAFDA 75 (83)
T ss_pred HHHHHHHHHHHHHHHHH-HcCCCCcHHHHhh--hhhhhHHHH-HHHHHHHHH
Confidence 33444456777778876 5566666889985 333444333 556666553
No 23
>PF08362 TetR_C_3: YcdC-like protein, C-terminal region; InterPro: IPR013573 This entry represents the C-terminal domain found in the hypothetical transcriptional regulators RutR and YcdC (P75899 from SWISSPROT) from Escherichia coli. Both of these proteins are member of the TetR (tetracycline resistance) transcriptional regulator family of proteins. RutR negatively controls the transcription of the rut operon involved in pyrimidine utilization. The C-terminal domains of RutR, YsiA and TetR share a multi-helical, interlocking structure. These proteins also contain helix-turn-helix (HTH) DNA-binding domains.; GO: 0045892 negative regulation of transcription, DNA-dependent; PDB: 3LOC_B.
Probab=26.51 E-value=57 Score=23.28 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcceecccCCCCCccccccHHHHH
Q psy14119 11 CGLVISAWGIVQLVLMGFFYSVRSVALAEDLPGAEHHYASAKEFY 55 (90)
Q Consensus 11 CclvLSvWGiImL~lLGiFF~v~SvaLiEDLP~~ee~~~s~~~f~ 55 (90)
-=+++|||++-|-= .=|-.|..++...-++++++|++..++.
T Consensus 91 ~hL~f~IWa~TQ~Y---ADf~~Qi~~~~g~~~~~~~d~e~a~~~v 132 (143)
T PF08362_consen 91 EHLFFMIWAMTQHY---ADFAAQIRAVLGKSELSEEDFEQAAEFV 132 (143)
T ss_dssp HHHHHHHHHHHHHH---HHTHHHHHHHHS--TTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhh---hhHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 45789999998842 2244555566665566666666544443
No 24
>CHL00038 psbL photosystem II protein L
Probab=25.53 E-value=77 Score=18.83 Aligned_cols=16 Identities=19% Similarity=0.767 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhh
Q psy14119 17 AWGIVQLVLMGFFYSV 32 (90)
Q Consensus 17 vWGiImL~lLGiFF~v 32 (90)
-||.....++|++|..
T Consensus 19 y~GLLlifvl~vlfss 34 (38)
T CHL00038 19 YWGLLLIFVLAVLFSN 34 (38)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4999999999999864
No 25
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=24.84 E-value=79 Score=18.89 Aligned_cols=16 Identities=19% Similarity=0.607 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhh
Q psy14119 17 AWGIVQLVLMGFFYSV 32 (90)
Q Consensus 17 vWGiImL~lLGiFF~v 32 (90)
-||.....++|++|.-
T Consensus 20 y~GlLlifvl~vLFss 35 (39)
T PRK00753 20 YLGLLLVFVLGILFSS 35 (39)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4999999999999864
No 26
>PF07589 VPEP: PEP-CTERM motif; InterPro: IPR013424 This entry describes a 25-residue region including an invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In most cases, this motif is found within nine residues of the C-terminal end of the protein. Proteins containing this motif typically have signal sequences at the N terminus [].
Probab=24.21 E-value=1.1e+02 Score=16.08 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy14119 16 SAWGIVQLVLMGFFY 30 (90)
Q Consensus 16 SvWGiImL~lLGiFF 30 (90)
|.|+...++++|+.+
T Consensus 6 st~~l~~~gl~~l~~ 20 (25)
T PF07589_consen 6 STLALLGLGLLGLAF 20 (25)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457888888888877
No 27
>COG4476 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.05 E-value=48 Score=22.95 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=17.4
Q ss_pred CCCCCccccccHHHHHHHHHHHhhhh
Q psy14119 40 DLPGAEHHYASAKEFYAAADKGYTLC 65 (90)
Q Consensus 40 DLP~~ee~~~s~~~f~~~~~~~Y~qv 65 (90)
|+....|+..|.-.|.++++.+|.+-
T Consensus 8 dldWsTEE~~~Vl~Ffn~VE~aYE~g 33 (90)
T COG4476 8 DLDWSTEEMISVLHFFNAVELAYEKG 33 (90)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHcc
Confidence 34444555666667888888888763
No 28
>KOG3465|consensus
Probab=23.64 E-value=63 Score=22.23 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.0
Q ss_pred cccHHHHHHHHHHHhhhhhhcccc
Q psy14119 48 YASAKEFYAAADKGYTLCKSSKRG 71 (90)
Q Consensus 48 ~~s~~~f~~~~~~~Y~qvAyN~~~ 71 (90)
+.+|+||.++.++.|..+--+|+.
T Consensus 4 ~qtwdEF~~ase~L~~A~P~~~Rl 27 (86)
T KOG3465|consen 4 LQTWDEFFTASESLYLANPEKTRL 27 (86)
T ss_pred eeeHHHHHHHHHHHHhcCccceEE
Confidence 468999999999999998888875
No 29
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=22.47 E-value=81 Score=25.58 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=23.8
Q ss_pred ceecccCCCC-CccccccHHHHHHHHHHHhhhh
Q psy14119 34 SVALAEDLPG-AEHHYASAKEFYAAADKGYTLC 65 (90)
Q Consensus 34 SvaLiEDLP~-~ee~~~s~~~f~~~~~~~Y~qv 65 (90)
+.-+++|+|. ++.+-+....|.+=+|..|++.
T Consensus 287 ~ti~I~~VP~l~~~~~n~arRFI~LID~LYd~~ 319 (362)
T PF03969_consen 287 HTIFISDVPVLSESDRNEARRFITLIDVLYDRK 319 (362)
T ss_pred CEEEEcCCCCcccCChhHHHHHHHHHHHHhhCC
Confidence 3578999996 3334445678899999999865
No 30
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=21.54 E-value=59 Score=25.95 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=16.3
Q ss_pred eecccCCCCCccccccHHHHHHHHH
Q psy14119 35 VALAEDLPGAEHHYASAKEFYAAAD 59 (90)
Q Consensus 35 vaLiEDLP~~ee~~~s~~~f~~~~~ 59 (90)
+..||| |++++|++.+..+.+++.
T Consensus 151 IvsIED-pf~edD~e~w~~lt~~~g 174 (295)
T PF00113_consen 151 IVSIED-PFDEDDWEGWAKLTKRLG 174 (295)
T ss_dssp EEEEES-SS-TT-HHHHHHHHHHHT
T ss_pred eEEEEc-cccccchHHHHHHHHhhh
Confidence 566788 788888888877766654
No 31
>PF09779 Ima1_N: Ima1 N-terminal domain; InterPro: IPR018617 Members of this family of uncharacterised novel proteins have no known function.
Probab=21.20 E-value=73 Score=22.28 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=23.2
Q ss_pred hcceecccCCCCCcc----ccc-cHHHHHHHHHHHhhhhhhcc
Q psy14119 32 VRSVALAEDLPGAEH----HYA-SAKEFYAAADKGYTLCKSSK 69 (90)
Q Consensus 32 v~SvaLiEDLP~~ee----~~~-s~~~f~~~~~~~Y~qvAyN~ 69 (90)
++.+|=+ +|.+++ .|+ .+++++++.++.|=++=-+|
T Consensus 87 ~~~LA~f--~P~~e~p~y~~~~~e~~~Yr~~LE~rYP~lC~~C 127 (131)
T PF09779_consen 87 INQLASF--LPDPEDPEYANYEEELPEYRRSLEQRYPQLCSSC 127 (131)
T ss_pred HHHHHhc--CCCCCCccHHHHHHHHHHHHHHHHHHhhHhhhhh
Confidence 4445545 576444 454 47888999999996554444
No 32
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=20.33 E-value=69 Score=21.31 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhhccee-cccCCC
Q psy14119 20 IVQLVLMGFFYSVRSVA-LAEDLP 42 (90)
Q Consensus 20 iImL~lLGiFF~v~Sva-LiEDLP 42 (90)
++.+++++.+|..+.+. .-++++
T Consensus 6 i~~lii~~~~~~~~~l~~~~~~i~ 29 (121)
T PF14276_consen 6 IFILIIALSIFSNNYLNNSTDSIE 29 (121)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHH
Confidence 44455666666666663 445555
Done!