Query psy14119
Match_columns 90
No_of_seqs 71 out of 73
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 20:01:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_J Photosystem II reaction 67.0 6.2 0.00021 22.9 3.1 19 14-32 13-31 (40)
2 2js5_A Uncharacterized protein 62.8 5.6 0.00019 25.4 2.7 27 36-65 28-54 (71)
3 3kl4_B DPAP B, YSCV, signal pe 54.7 6.4 0.00022 22.7 1.7 13 12-24 19-31 (42)
4 3csx_A Putative uncharacterize 51.6 8.7 0.0003 25.0 2.2 27 36-65 40-66 (81)
5 1914_A Signal recognition part 31.4 26 0.00088 26.5 2.2 26 47-72 149-174 (232)
6 1df4_A HIV-1 envelope glycopro 22.4 39 0.0014 20.8 1.6 13 13-25 21-33 (68)
7 4ev6_A Magnesium transport pro 20.4 67 0.0023 23.8 2.7 29 13-45 280-310 (339)
8 3arc_L Photosystem II reaction 19.6 79 0.0027 17.9 2.3 16 17-32 18-33 (37)
9 2wfu_B Probable insulin-like p 18.7 15 0.00053 19.1 -0.8 8 2-9 4-11 (26)
10 1jq0_A GP41 envelope protein; 15.9 66 0.0023 20.6 1.6 12 13-24 25-36 (84)
No 1
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=66.99 E-value=6.2 Score=22.86 Aligned_cols=19 Identities=26% Similarity=0.544 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy14119 14 VISAWGIVQLVLMGFFYSV 32 (90)
Q Consensus 14 vLSvWGiImL~lLGiFF~v 32 (90)
|--+=|+.-+.++|+|||=
T Consensus 13 vgtv~G~~vi~~~giFfyG 31 (40)
T 3arc_J 13 VATVAGMGVIVIVGLFFYG 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehhhhhhheeeEEEee
Confidence 4445578889999999984
No 2
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=62.83 E-value=5.6 Score=25.36 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=17.4
Q ss_pred ecccCCCCCccccccHHHHHHHHHHHhhhh
Q psy14119 36 ALAEDLPGAEHHYASAKEFYAAADKGYTLC 65 (90)
Q Consensus 36 aLiEDLP~~ee~~~s~~~f~~~~~~~Y~qv 65 (90)
-|.||||. +|+.+-+--++.+++|++.
T Consensus 28 DLaEdLP~---~w~~i~~vA~~tyda~~~l 54 (71)
T 2js5_A 28 DLAEDLPT---GWNRIMEVAEKTYEAYRQL 54 (71)
T ss_dssp HHHHSTTT---SGGGHHHHHHHHHHHHHHH
T ss_pred HHhccchh---hHHHHHHHHHHHHHHHHHH
Confidence 37899997 5666555556666666543
No 3
>3kl4_B DPAP B, YSCV, signal peptide of yeast dipeptidyl aminopeptidase; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Saccharomyces cerevisiae}
Probab=54.73 E-value=6.4 Score=22.75 Aligned_cols=13 Identities=46% Similarity=0.784 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHH
Q psy14119 12 GLVISAWGIVQLV 24 (90)
Q Consensus 12 clvLSvWGiImL~ 24 (90)
-+++-+||++.|+
T Consensus 19 ilvlliwgtvlll 31 (42)
T 3kl4_B 19 ILVLLIWGTVLLL 31 (42)
T ss_pred ehhHHHHHHHHHh
Confidence 4678899998653
No 4
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=51.64 E-value=8.7 Score=25.02 Aligned_cols=27 Identities=26% Similarity=0.253 Sum_probs=17.2
Q ss_pred ecccCCCCCccccccHHHHHHHHHHHhhhh
Q psy14119 36 ALAEDLPGAEHHYASAKEFYAAADKGYTLC 65 (90)
Q Consensus 36 aLiEDLP~~ee~~~s~~~f~~~~~~~Y~qv 65 (90)
-|.||||. +|+.+-+--++.+++|++.
T Consensus 40 DLaEdLP~---~w~~i~~vA~~tyda~~~l 66 (81)
T 3csx_A 40 DLAEGLPT---DYENLVETAEKTYEIFREL 66 (81)
T ss_dssp HHHHHTTT---TGGGHHHHHHHHHHHHHHH
T ss_pred HHHccchh---hHHHHHHHHHHHHHHHHHH
Confidence 37899997 5666545546666666543
No 5
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C*
Probab=31.44 E-value=26 Score=26.47 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=22.0
Q ss_pred ccccHHHHHHHHHHHhhhhhhccccc
Q psy14119 47 HYASAKEFYAAADKGYTLCKSSKRGA 72 (90)
Q Consensus 47 ~~~s~~~f~~~~~~~Y~qvAyN~~~a 72 (90)
-+.+|+||.+++...|++.=.++++.
T Consensus 149 y~~sw~eF~~~s~~Ly~a~P~~tRy~ 174 (232)
T 1914_A 149 QFQTWEEFSRAAEKLYLADPMKVRVV 174 (232)
T ss_dssp -CCSHHHHHHHHHHHHHHCTTTCEEE
T ss_pred eeCCHHHHHHHHHHHHHhCCCceEEE
Confidence 35689999999999999998888763
No 6
>1df4_A HIV-1 envelope glycoprotein GP41; membrane fusion, protein-detergent interaction; 1.45A {Human immunodeficiency virus 1} SCOP: h.3.2.1 PDB: 1df5_A 1szt_A 2ot5_A 1i5y_A 1qr9_A 1k34_A 1k33_A 1i5x_A 1dlb_A 1qr8_A 3g7a_A* 3vie_A 2zzo_N 1aik_N
Probab=22.42 E-value=39 Score=20.79 Aligned_cols=13 Identities=46% Similarity=0.871 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHH
Q psy14119 13 LVISAWGIVQLVL 25 (90)
Q Consensus 13 lvLSvWGiImL~l 25 (90)
+=++||||.+|--
T Consensus 21 l~ltvwGikqLqa 33 (68)
T 1df4_A 21 LQLTVWGIKQLQA 33 (68)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHhhhccccc
Confidence 4578999998643
No 7
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=20.37 E-value=67 Score=23.76 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=22.9
Q ss_pred HHHHHHHHHH--HHHHHHHHhhcceecccCCCCCc
Q psy14119 13 LVISAWGIVQ--LVLMGFFYSVRSVALAEDLPGAE 45 (90)
Q Consensus 13 lvLSvWGiIm--L~lLGiFF~v~SvaLiEDLP~~e 45 (90)
-+|++|.+|+ +.+...+|-++ ++.+|..+
T Consensus 280 k~LTiit~IflP~T~IaGiyGMN----f~~mPel~ 310 (339)
T 4ev6_A 280 KILTMVTTIFAVPMWITGIYGMN----FSYLPLAN 310 (339)
T ss_dssp HHHHHHHHHSSHHHHHHHHTTCC----CSCCTTSS
T ss_pred HHHHHHHHHHHHHHHHHhhccCc----CCCCCCcc
Confidence 3789999997 57788899988 57788633
No 8
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=19.59 E-value=79 Score=17.85 Aligned_cols=16 Identities=13% Similarity=0.557 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhh
Q psy14119 17 AWGIVQLVLMGFFYSV 32 (90)
Q Consensus 17 vWGiImL~lLGiFF~v 32 (90)
-||......+|+.|..
T Consensus 18 y~GLLlifvlavlFss 33 (37)
T 3arc_L 18 YLGLLLILVLALLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4999999999999864
No 9
>2wfu_B Probable insulin-like peptide 5 B chain; cleavage on PAIR of basic residues, signaling protein; 1.85A {Drosophila melanogaster} PDB: 2wfv_B
Probab=18.68 E-value=15 Score=19.14 Aligned_cols=8 Identities=50% Similarity=1.240 Sum_probs=5.7
Q ss_pred cccCccch
Q psy14119 2 KICGPKLS 9 (90)
Q Consensus 2 ~~CGPKcS 9 (90)
+.|||+++
T Consensus 4 ~lCG~~L~ 11 (26)
T 2wfu_B 4 RACGPALM 11 (26)
T ss_dssp CCCHHHHH
T ss_pred chhhHHHH
Confidence 57888765
No 10
>1jq0_A GP41 envelope protein; SIV, HIV-1, membrane fusion, six-helix bundle, trimer- hairpins, viral protein; 1.70A {Simian immunodeficiency virus} SCOP: h.3.2.1 PDB: 1jpx_A
Probab=15.91 E-value=66 Score=20.59 Aligned_cols=12 Identities=42% Similarity=0.908 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHH
Q psy14119 13 LVISAWGIVQLV 24 (90)
Q Consensus 13 lvLSvWGiImL~ 24 (90)
+=++||||-+|-
T Consensus 25 l~ltvwGikqLq 36 (84)
T 1jq0_A 25 LRLTVWGIKNLQ 36 (84)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh
Confidence 457899998863
Done!