Query psy14119
Match_columns 90
No_of_seqs 71 out of 73
Neff 3.5
Searched_HMMs 13730
Date Fri Aug 16 20:01:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14119.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14119hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtj1 f.23.32.1 (J:7-40) Pho 76.2 1.4 0.0001 23.4 3.1 21 13-33 6-26 (34)
2 d1914a1 d.49.1.1 (A:4004-4081) 74.2 0.89 6.5E-05 28.0 2.2 24 48-71 1-24 (78)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 33.2 15 0.0011 19.5 2.3 15 17-31 18-32 (37)
4 d1a1ia3 g.37.1.1 (A:160-187) Z 30.0 6.6 0.00048 19.9 0.4 9 1-9 6-14 (28)
5 d1w6ta1 c.1.11.1 (A:138-433) E 29.0 12 0.00085 27.0 1.8 23 35-58 150-172 (296)
6 d2ptza1 c.1.11.1 (A:139-429) E 23.7 13 0.00098 26.5 1.3 23 35-58 149-171 (291)
7 d2fyma1 c.1.11.1 (A:140-431) E 22.5 11 0.0008 27.1 0.6 24 34-58 145-168 (292)
8 d2gsva1 a.23.7.1 (A:3-69) Hypo 18.8 27 0.002 20.5 1.7 15 52-66 51-65 (67)
9 d2akza1 c.1.11.1 (A:140-433) E 17.3 21 0.0015 25.5 1.1 22 34-56 148-169 (294)
10 d2e74g1 f.23.26.1 (G:9-35) Pet 16.0 57 0.0041 15.9 2.3 15 17-31 2-16 (27)
No 1
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=76.18 E-value=1.4 Score=23.44 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy14119 13 LVISAWGIVQLVLMGFFYSVR 33 (90)
Q Consensus 13 lvLSvWGiImL~lLGiFF~v~ 33 (90)
+|--+=|+.-+.++|+|||=.
T Consensus 6 lv~tv~G~~vi~~vG~FfYGs 26 (34)
T d2axtj1 6 IVATVAGMGVIVIVGLFFYGA 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred EeeehhhhhhHhheeeeeeee
Confidence 344556888999999999953
No 2
>d1914a1 d.49.1.1 (A:4004-4081) Signal recognition particle 9KDa protein, SRP9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=74.20 E-value=0.89 Score=28.01 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=21.3
Q ss_pred cccHHHHHHHHHHHhhhhhhcccc
Q psy14119 48 YASAKEFYAAADKGYTLCKSSKRG 71 (90)
Q Consensus 48 ~~s~~~f~~~~~~~Y~qvAyN~~~ 71 (90)
|+||+||.+++++.|.+.-..++-
T Consensus 1 f~sWeEF~~aa~~Ly~~~P~ktRy 24 (78)
T d1914a1 1 FQTWEEFSRAAEKLYLADPMKVRV 24 (78)
T ss_dssp CCSHHHHHHHHHHHHHHCTTTCEE
T ss_pred CCCHHHHHHHHHHHHHhCCCceEE
Confidence 679999999999999999888763
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=33.18 E-value=15 Score=19.52 Aligned_cols=15 Identities=13% Similarity=0.616 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHh
Q psy14119 17 AWGIVQLVLMGFFYS 31 (90)
Q Consensus 17 vWGiImL~lLGiFF~ 31 (90)
-||......+|++|.
T Consensus 18 y~GlLlifvl~vLFs 32 (37)
T d2axtl1 18 YLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 499999999999985
No 4
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.97 E-value=6.6 Score=19.90 Aligned_cols=9 Identities=44% Similarity=1.003 Sum_probs=6.4
Q ss_pred CcccCccch
Q psy14119 1 MKICGPKLS 9 (90)
Q Consensus 1 ~~~CGPKcS 9 (90)
|.+||.|-+
T Consensus 6 C~~CgrkFA 14 (28)
T d1a1ia3 6 CDICGRKFA 14 (28)
T ss_dssp CTTTCCEES
T ss_pred cchhhhhhh
Confidence 678887754
No 5
>d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=29.03 E-value=12 Score=26.98 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=17.1
Q ss_pred eecccCCCCCccccccHHHHHHHH
Q psy14119 35 VALAEDLPGAEHHYASAKEFYAAA 58 (90)
Q Consensus 35 vaLiEDLP~~ee~~~s~~~f~~~~ 58 (90)
+..+|| |+.|+|++.|..+.+++
T Consensus 150 IisIED-P~~e~D~~gw~~lt~~l 172 (296)
T d1w6ta1 150 IITIED-GMDENDWDGWKALTERL 172 (296)
T ss_dssp EEEEES-CSCTTCHHHHHHHHHHH
T ss_pred eEEEec-CcccccHHHHHHHHHHh
Confidence 567888 88888988877665544
No 6
>d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId: 5691]}
Probab=23.67 E-value=13 Score=26.47 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=16.3
Q ss_pred eecccCCCCCccccccHHHHHHHH
Q psy14119 35 VALAEDLPGAEHHYASAKEFYAAA 58 (90)
Q Consensus 35 vaLiEDLP~~ee~~~s~~~f~~~~ 58 (90)
+..||| |++|+|++++.++.+++
T Consensus 149 IisIED-p~~e~D~~gw~~lt~~~ 171 (291)
T d2ptza1 149 IVSIED-PYDQDDFAGFAGITEAL 171 (291)
T ss_dssp EEEEEC-CSCTTCHHHHHHHHHHT
T ss_pred eeEecC-CccccchhHHHHhhhcc
Confidence 456788 78888888876665443
No 7
>d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId: 562]}
Probab=22.50 E-value=11 Score=27.11 Aligned_cols=24 Identities=13% Similarity=-0.007 Sum_probs=17.4
Q ss_pred ceecccCCCCCccccccHHHHHHHH
Q psy14119 34 SVALAEDLPGAEHHYASAKEFYAAA 58 (90)
Q Consensus 34 SvaLiEDLP~~ee~~~s~~~f~~~~ 58 (90)
.+..+|| |+.|+|+++|..+.+++
T Consensus 145 PIisIED-P~~edD~~gw~~lt~~~ 168 (292)
T d2fyma1 145 PIVSIED-GLDESDWDGFAYQTKVL 168 (292)
T ss_dssp CEEEEES-CSCTTCHHHHHHHHHHH
T ss_pred ceEEEeC-CcccccHHHHHHHHHhc
Confidence 3556788 78888888887665554
No 8
>d2gsva1 a.23.7.1 (A:3-69) Hypothetical protein YvfG {Bacillus subtilis [TaxId: 1423]}
Probab=18.85 E-value=27 Score=20.50 Aligned_cols=15 Identities=20% Similarity=0.197 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhhh
Q psy14119 52 KEFYAAADKGYTLCK 66 (90)
Q Consensus 52 ~~f~~~~~~~Y~qvA 66 (90)
-...+..|++||+++
T Consensus 51 lkRiqHLdEAY~KVk 65 (67)
T d2gsva1 51 LKRIQHLDEAYNKVK 65 (67)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 345689999999886
No 9
>d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Probab=17.28 E-value=21 Score=25.50 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=15.8
Q ss_pred ceecccCCCCCccccccHHHHHH
Q psy14119 34 SVALAEDLPGAEHHYASAKEFYA 56 (90)
Q Consensus 34 SvaLiEDLP~~ee~~~s~~~f~~ 56 (90)
.+..||| |++|+|++++..+.+
T Consensus 148 PIisIED-P~~E~D~~gw~~lt~ 169 (294)
T d2akza1 148 PVVSIED-PFDQDDWAAWSKFTA 169 (294)
T ss_dssp CEEEEEC-CSCTTCHHHHHHHHH
T ss_pred CeEEEeC-CCcccchhhHHHHHH
Confidence 3557888 788888888766643
No 10
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.02 E-value=57 Score=15.91 Aligned_cols=15 Identities=40% Similarity=0.742 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHh
Q psy14119 17 AWGIVQLVLMGFFYS 31 (90)
Q Consensus 17 vWGiImL~lLGiFF~ 31 (90)
|-|.|...+-|.||-
T Consensus 2 vlgli~~tl~glf~a 16 (27)
T d2e74g1 2 VLGLVFATLGGLFYA 16 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHH
Confidence 446777777777763
Done!