RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14119
         (90 letters)



>gnl|CDD|235751 PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated.
          Length = 871

 Score = 32.6 bits (75), Expect = 0.017
 Identities = 11/15 (73%), Positives = 12/15 (80%)

Query: 30  YSVRSVALAEDLPGA 44
           Y+VRS A AEDLP A
Sbjct: 112 YAVRSSATAEDLPTA 126


>gnl|CDD|222345 pfam13727, CoA_binding_3, CoA-binding domain. 
          Length = 175

 Score = 28.7 bits (65), Expect = 0.29
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 6  PKLSLCGLVISAWGIVQLVLMGFFYSVRSV 35
            L   G V+ AW +V L+L+   +S+   
Sbjct: 13 SLLRELGRVLQAWTLVLLLLLLLSFSLGDA 42


>gnl|CDD|216434 pfam01326, PPDK_N, Pyruvate phosphate dikinase, PEP/pyruvate
           binding domain.  This enzyme catalyzes the reversible
           conversion of ATP to AMP, pyrophosphate and
           phosphoenolpyruvate (PEP).
          Length = 324

 Score = 28.6 bits (64), Expect = 0.35
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 29  FYSVRSVALAEDLPGAE 45
             +VRS A AEDLP A 
Sbjct: 99  PVAVRSSATAEDLPEAS 115


>gnl|CDD|235809 PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated.
          Length = 795

 Score = 27.8 bits (63), Expect = 0.78
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 32  VRSVALAEDLPGA 44
           VRS A AEDLP A
Sbjct: 123 VRSSATAEDLPDA 135


>gnl|CDD|233405 TIGR01418, PEP_synth, phosphoenolpyruvate synthase.  Also called
           pyruvate,water dikinase and PEP synthase. The member
           from Methanococcus jannaschii contains a large intein.
           This enzyme generates phosphoenolpyruvate (PEP) from
           pyruvate, hydrolyzing ATP to AMP and releasing inorganic
           phosphate in the process. The enzyme shows extensive
           homology to other enzymes that use PEP as substrate or
           product. This enzyme may provide PEP for
           gluconeogenesis, for PTS-type carbohydrate transport
           systems, or for other processes [Energy metabolism,
           Glycolysis/gluconeogenesis].
          Length = 782

 Score = 27.0 bits (60), Expect = 1.5
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 29  FYSVRSVALAEDLPGAEHHYASAKEFY 55
             +VRS A AEDLP A   +A  +E Y
Sbjct: 117 DVAVRSSATAEDLPDAS--FAGQQETY 141


>gnl|CDD|236991 PRK11815, PRK11815, tRNA-dihydrouridine synthase A; Provisional.
          Length = 333

 Score = 25.5 bits (57), Expect = 3.8
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 11/39 (28%)

Query: 57  AADKGYT---L---CKSSK--RGARGSLPFCLMGNPALV 87
           A D GY    L   C S +   G  G+   CLM  P LV
Sbjct: 86  AEDWGYDEINLNVGCPSDRVQNGRFGA---CLMAEPELV 121


>gnl|CDD|178487 PLN02899, PLN02899, alpha-galactosidase.
          Length = 633

 Score = 25.5 bits (56), Expect = 4.9
 Identities = 9/31 (29%), Positives = 12/31 (38%)

Query: 60  KGYTLCKSSKRGARGSLPFCLMGNPALVNIS 90
               +C + K G RG  P CL     L+   
Sbjct: 435 DLDQICWNEKMGRRGEEPLCLYKTKPLLASD 465


>gnl|CDD|152296 pfam11860, DUF3380, Protein of unknown function (DUF3380).  This
           family of proteins are functionally uncharacterized.
           This protein is found in bacteria and viruses. Proteins
           in this family are typically between 194 to 284 amino
           acids in length. This protein is found associated with
           pfam01471.
          Length = 174

 Score = 24.5 bits (54), Expect = 7.8
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 15/46 (32%)

Query: 16  SAWGIVQLVLMGFFYSVRSVALAEDLPGAEHHYASAKEFYAAADKG 61
           ++WG+ Q+  MGF Y      L          YAS  EF  A    
Sbjct: 88  ASWGLFQI--MGFHY----KELG---------YASVVEFVEAMRSS 118


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0779    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,404,814
Number of extensions: 344854
Number of successful extensions: 354
Number of sequences better than 10.0: 1
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 12
Length of query: 90
Length of database: 10,937,602
Length adjustment: 58
Effective length of query: 32
Effective length of database: 8,365,070
Effective search space: 267682240
Effective search space used: 267682240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)