RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14119
         (90 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.1 bits (62), Expect = 0.40
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 30/87 (34%)

Query: 9   SLCGLVISAWGIVQLVLMGFFYSVRSVALAEDLPGAEHHYASAKEFYAAADKGYTL---- 64
            L G    + G+V         +  ++A  +          S + F+ +  K  T+    
Sbjct: 266 YLKGATGHSQGLV---------TAVAIAETD----------SWESFFVSVRKAITVLFFI 306

Query: 65  -CKSSKRGARGSLPFCLMGNPALVNIS 90
             +  +     SLP      P+++  S
Sbjct: 307 GVRCYEAYPNTSLP------PSILEDS 327



 Score = 27.7 bits (61), Expect = 0.52
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 3   ICGPKLSLCGLVIS 16
           + GP  SL GL ++
Sbjct: 379 VSGPPQSLYGLNLT 392


>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2,
           protein structure initiative, M center for structural
           genomics, transferase; 2.40A {Neisseria meningitidis}
          Length = 794

 Score = 27.6 bits (61), Expect = 0.50
 Identities = 10/15 (66%), Positives = 11/15 (73%)

Query: 30  YSVRSVALAEDLPGA 44
            +VRS A AEDLP A
Sbjct: 122 VAVRSSATAEDLPDA 136


>3s3u_A Cysteine transferase; autoproteolytic, carbapenem, biosynthesis,
           DOM-fold, amidohy transferase; 1.60A {Streptomyces
           cattleya}
          Length = 419

 Score = 25.2 bits (54), Expect = 3.6
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 32  VRSVALAEDLPGAEHHYASAKEFYA 56
           V +V  A  +      + S +E YA
Sbjct: 393 VHAVLAATGVDTPGGVHPSYRELYA 417


>3udf_A Penicillin-binding protein 1A; transglycosylase, transpeptidase;
           HET: MES; 1.70A {Acinetobacter baumannii} PDB: 3udi_A*
           3udx_A* 3ue0_A* 3ue1_A*
          Length = 731

 Score = 24.6 bits (54), Expect = 6.2
 Identities = 5/12 (41%), Positives = 7/12 (58%), Gaps = 1/12 (8%)

Query: 55  YAAA-DKGYTLC 65
           YA A ++G T  
Sbjct: 433 YALALERGMTPY 444


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0813    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,367,733
Number of extensions: 68140
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 12
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.3 bits)