BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1412
(504 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 295 bits (755), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 179/501 (35%), Positives = 264/501 (52%), Gaps = 55/501 (10%)
Query: 50 ALMYDSVHVLAAGLALLDKSSV-IKTSNLSCDL----EVPWRDGLSLYNYIN-------- 96
AL YD+V V+ L K + I + D VPW G+ + +
Sbjct: 274 ALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLS 333
Query: 97 --------------TLDXXXXXXXXXXXVGHWTPAEGINITDRSAFYETSTNNVTLIVMT 142
T++ +G+W+ + + +T+ + T++V T
Sbjct: 334 GNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVLTEDDT---SGLEQKTVVVTT 390
Query: 143 REEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKE 201
E PYVM+K N A L GN +EG+C+DL IA GF + L +V D YG D +TK
Sbjct: 391 ILESPYVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKI 450
Query: 202 WNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMN 261
WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K P +FSF++
Sbjct: 451 WNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLD 510
Query: 262 PLAVEIWLYVLAAYLLVSFTLFVMARFSPYEWSNPH---PCLAESPIVENQFSVSNSFWF 318
PLA EIW+ ++ AY+ VS LF+++RFSPYEW +S N+F + NS WF
Sbjct: 511 PLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWF 570
Query: 319 ITGTFLRQGSGLNPKVLQQGSSRTLD-----------TALDSKIEIYQKMWRYMESKKCI 367
G F++QG+ ++P+ L S R + ++ + + + + R + +
Sbjct: 571 SLGAFMQQGADISPRSL---SGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESA 627
Query: 368 LFLGGQGDETFVTIDLSQRAD----SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVL-- 421
L Q + + T+D + SKI ++ KMW YM S PSVFV EGV RV
Sbjct: 628 EDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKS 687
Query: 422 EGDYAFLMESTMLDYEVQRN-CNLTQIGGLLDSKGYGIATPKGSPWRDRISLAILELQEK 480
+G YA+L+ESTM +Y QR C+ ++GG LDSKGYGIATPKGS ++LA+L+L E+
Sbjct: 688 KGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQ 747
Query: 481 GTIQMLYDKWWKNTGDVCNRD 501
G + L +KWW + G+ +D
Sbjct: 748 GLLDKLKNKWWYDKGECGAKD 768
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXU|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXV|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
pdb|2XXV|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 86/107 (80%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448
SKI Y KMW +M S+R SV V EEG++RVL DYAFLMEST +++ QRNCNLTQIG
Sbjct: 150 SKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
GL+DSKGYG+ TPKGSP+RD+I++AIL+LQE+G + M+ +KWW+ G
Sbjct: 210 GLIDSKGYGVGTPKGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 256
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 97/160 (60%), Gaps = 6/160 (3%)
Query: 134 NNVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTY 192
+N +LIV T E+PYV+ K +D L GN FEG+CIDLL+ ++ +GF + +RLV D Y
Sbjct: 2 SNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKY 61
Query: 193 GVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQ 252
G D +WNG+V+EL+D KADLAVA + I Y RE VIDF+KPFM LGI IL++ T
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKGTP- 120
Query: 253 PTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYE 292
+ LA + + A + T F ++ S Y+
Sbjct: 121 ----IDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYD 156
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|B Chain B, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|C Chain C, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|D Chain D, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|E Chain E, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|F Chain F, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
Length = 312
Score = 154 bits (390), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 88/114 (77%), Gaps = 2/114 (1%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448
SKI Y KMW +M S+R SV V EEG++RVL DYAFLMEST +++ QRNCNLTQIG
Sbjct: 184 SKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG 243
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGDVCNRDE 502
GL+DSKGYG+ TP GSP+RD+I++AIL+LQE+G + M+ +KWW+ G C +E
Sbjct: 244 GLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG--CPEEE 295
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 94/142 (66%), Gaps = 8/142 (5%)
Query: 121 NITDRSAFYETSTNNVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVG 179
NITD S +N +LIV T E+PYV+ K +D L GN FEG+CIDLL+ ++ +G
Sbjct: 5 NITD-------SLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILG 57
Query: 180 FHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMN 239
F + +RLV D YG D +WNG+V+EL+D KADLAVA + I Y RE VIDF+KPFM
Sbjct: 58 FTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMT 117
Query: 240 LGIGILFKVPTSQPTRLFSFMN 261
LGI IL++ P +FSF+N
Sbjct: 118 LGISILYRKPNGTNPGVFSFLN 139
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|C Chain C, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
Length = 259
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 85/107 (79%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448
SKI Y KMW +M S+R SV V EEG++RVL DYAFLMEST +++ QRNCNLTQIG
Sbjct: 150 SKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
GL+DSKGYG+ TP GSP+RD+I+LAIL+LQE+G + M+ +KWW+ G
Sbjct: 210 GLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRGNG 256
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
Query: 134 NNVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTY 192
+N +LIV T E+PYV+ K +D L GN FEG+CIDLL+ ++ +GF + +RLV D Y
Sbjct: 2 SNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKY 61
Query: 193 GVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
G D +WNG+V+EL+D KADLAVA + I Y RE VIDF+KPFM LGI IL++ T
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGT 119
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
Length = 259
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 85/107 (79%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448
SKI Y KMW +M S+R SV V EEG++RVL DYAFLMEST +++ QRNCNLTQIG
Sbjct: 150 SKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
GL+DSKGYG+ TP GSP+RD+I+LAIL+LQE+G + M+ +KWW+ G
Sbjct: 210 GLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRGNG 256
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
Query: 134 NNVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTY 192
+N +LIV T E+PYV+ K +D L GN FEG+CIDLL+ ++ +GF + +RLV D Y
Sbjct: 2 SNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKY 61
Query: 193 GVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
G D +WNG+V+EL+D KADLAVA + I Y RE VIDF+KPFM LGI IL++ T
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGT 119
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
Length = 259
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 85/107 (79%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448
SKI Y KMW +M S+R SV V EEG++RVL DYAFLMEST +++ QRNCNLTQIG
Sbjct: 150 SKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
GL+DSKGYG+ TP GSP+RD+I+LAIL+LQE+G + M+ +KWW+ G
Sbjct: 210 GLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHMMKEKWWRGNG 256
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 97/160 (60%), Gaps = 6/160 (3%)
Query: 134 NNVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTY 192
+N +LIV T E+PYV+ K +D L GN FEG+CIDLL+ ++ +GF + +RLV D Y
Sbjct: 2 SNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKY 61
Query: 193 GVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQ 252
G D +WNG+V+EL+D KADLAVA + I Y RE VIDF+KPFM LGI IL++ T
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGTP- 120
Query: 253 PTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYE 292
+ LA + + A + T F ++ S Y+
Sbjct: 121 ----IDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYD 156
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
Length = 259
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 85/107 (79%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448
SKI Y KMW +M S+R SV V EEG++RVL DYAFLMEST +++ QRNCNLTQIG
Sbjct: 150 SKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
GL+DSKGYG+ TP GSP+RD+I+LAIL+LQE+G + M+ +KWW+ G
Sbjct: 210 GLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHMMKEKWWRGNG 256
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 97/160 (60%), Gaps = 6/160 (3%)
Query: 134 NNVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTY 192
+N +LIV T E+PYV+ K +D L GN FEG+CIDLL+ ++ +GF + +RLV D Y
Sbjct: 2 SNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKY 61
Query: 193 GVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQ 252
G D +WNG+V+EL+D KADLAVA + I Y RE VIDF+KPFM LGI IL++ T
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGTP- 120
Query: 253 PTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYE 292
+ LA + + A + T F ++ S Y+
Sbjct: 121 ----IDSADDLAKQTKIEYGAVEDGATMTFFKRSKISTYD 156
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
pdb|3G3H|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
Length = 259
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 85/107 (79%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448
SKI Y KMW +M S+R SV V EEG++RVL DYAFLMEST +++ QRNCNLTQIG
Sbjct: 150 SKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
GL+DSKGYG+ TP GSP+RD+I+LAIL+LQE+G + M+ +KWW+ G
Sbjct: 210 GLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHMMKEKWWRGNG 256
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
Query: 134 NNVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTY 192
+N +LIV T E+PYV+ K +D L GN FEG+CIDLL+ ++ +GF + +RLV D Y
Sbjct: 2 SNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKY 61
Query: 193 GVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
G D +WNG+V+EL+D KADLAVA + I Y RE VIDF+KPFM LGI IL++ T
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKGT 119
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
pdb|3QXM|B Chain B, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
Length = 258
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 66/107 (61%), Positives = 85/107 (79%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448
SKI Y KMW +M S+R SV V EEG++RVL DYAFLMEST +++ QRNCNLTQIG
Sbjct: 149 SKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG 208
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
GL+DSKGYG+ TP GSP+RD+I++AIL+LQE+G + M+ +KWW+ G
Sbjct: 209 GLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 255
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
Query: 134 NNVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTY 192
+N +LIV T E+PYV+ K +D L GN FEG+CIDLL+ ++ +GF + +RLV D Y
Sbjct: 1 SNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKY 60
Query: 193 GVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
G D +WNG+V+EL+D KADLAVA + I Y RE VIDF+KPFM LGI IL++ T
Sbjct: 61 GAQDDANGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKGT 118
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a)
In Complex With Glutamate At 1.65 A Resolution
pdb|1S7Y|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S7Y|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S9T|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1S9T|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1SD3|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1SD3|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1TT1|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|1TT1|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|3G3F|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
pdb|3G3F|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
Length = 259
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 66/107 (61%), Positives = 85/107 (79%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448
SKI Y KMW +M S+R SV V EEG++RVL DYAFLMEST +++ QRNCNLTQIG
Sbjct: 150 SKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
GL+DSKGYG+ TP GSP+RD+I++AIL+LQE+G + M+ +KWW+ G
Sbjct: 210 GLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 256
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
Query: 134 NNVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTY 192
+N +LIV T E+PYV+ K +D L GN FEG+CIDLL+ ++ +GF + +RLV D Y
Sbjct: 2 SNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKY 61
Query: 193 GVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
G D +WNG+V+EL+D KADLAVA + I Y RE VIDF+KPFM LGI IL++ T
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKGT 119
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
pdb|3G3G|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
Length = 259
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 66/107 (61%), Positives = 85/107 (79%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448
SKI Y KMW +M S+R SV V EEG++RVL DYAFLMEST +++ QRNCNLTQIG
Sbjct: 150 SKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
GL+DSKGYG+ TP GSP+RD+I++AIL+LQE+G + M+ +KWW+ G
Sbjct: 210 GLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 256
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
Query: 134 NNVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTY 192
+N +LIV T E+PYV+ K +D L GN FEG+CIDLL+ ++ +GF + +RLV D Y
Sbjct: 2 SNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKY 61
Query: 193 GVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
G D +WNG+V+EL+D KADLAVA + I Y RE VIDF+KPFM LGI IL++ T
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKGT 119
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXR|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXT|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
pdb|2XXT|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
Length = 261
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 66/107 (61%), Positives = 85/107 (79%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448
SKI Y KMW +M S+R SV V EEG++RVL DYAFLMEST +++ QRNCNLTQIG
Sbjct: 150 SKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
GL+DSKGYG+ TP GSP+RD+I++AIL+LQE+G + M+ +KWW+ G
Sbjct: 210 GLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 256
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
Query: 134 NNVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTY 192
+N +LIV T E+PYV+ K +D L GN FEG+CIDLL+ ++ +GF + +RLV D Y
Sbjct: 2 SNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKY 61
Query: 193 GVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
G D +WNG+V+EL+D KADLAVA + I Y RE VIDF+KPFM LGI IL++ T
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKGT 119
>pdb|2I0C|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
pdb|2I0C|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
Length = 259
Score = 151 bits (382), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 84/107 (78%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448
SKI Y KMW +M S+R SV V EEG++RVL DYAFLMEST +++ QRNCNLTQIG
Sbjct: 150 SKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
GL+DSKGYG+ TP GSP+RD+I++AI +LQE+G + M+ +KWW+ G
Sbjct: 210 GLIDSKGYGVGTPMGSPYRDKITIAICQLQEEGKLHMMKEKWWRGNG 256
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 96/160 (60%), Gaps = 6/160 (3%)
Query: 134 NNVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTY 192
+N +LIV T E+PYV+ K +D L GN FEG+CIDLL+ ++ +GF + +RLV D Y
Sbjct: 2 SNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKY 61
Query: 193 GVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQ 252
G D +WNG+V+EL+D KADLAVA + I RE VIDF+KPFM LGI IL++ T
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITCVREKVIDFSKPFMTLGISILYRKGTP- 120
Query: 253 PTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYE 292
+ LA + + A + T F ++ S Y+
Sbjct: 121 ----IDSADDLAKQTKIEYGAVEDGATMTFFKKSKISTYD 156
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXW|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXX|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXY|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 84/107 (78%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448
SKI Y KMW +M S+R SV V EEG++RVL DYAFLMEST +++ QRNCNLTQIG
Sbjct: 150 SKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG 209
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
GL+DSKGYG+ TP GSP+R +I++AIL+LQE+G + M+ +KWW+ G
Sbjct: 210 GLIDSKGYGVGTPMGSPYRKKITIAILQLQEEGKLHMMKEKWWRGNG 256
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
Query: 134 NNVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTY 192
+N +LIV T E+PYV+ K +D L GN FEG+CIDLL+ ++ +GF + +RLV D Y
Sbjct: 2 SNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKY 61
Query: 193 GVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
G D +WNG+V+EL+D KADLAVA + I Y RE VIDF+KPFM LGI IL++ T
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKGT 119
>pdb|2F34|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F34|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F35|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F35|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F36|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2OJT|A Chain A, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2OJT|B Chain B, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2QS1|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS1|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS2|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS2|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS3|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS3|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS4|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
Length = 258
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 85/107 (79%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448
SKI Y+KMW +M S++ S V + +EG++RVL DYA LMEST ++Y QRNCNLTQIG
Sbjct: 149 SKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIG 208
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
GL+DSKGYG+ TP GSP+RD+I++AIL+LQE+G + M+ +KWW+ G
Sbjct: 209 GLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 255
Score = 131 bits (330), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 100/160 (62%), Gaps = 7/160 (4%)
Query: 134 NNVTLIVMTREEKPYVMV-KNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTY 192
+N TLIV T E+PYVM K+D L GN FEG+C+DLLK ++ +GF + ++LVPD Y
Sbjct: 2 SNRTLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKY 61
Query: 193 GVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQ 252
G ++ EWNG+VKEL+D +ADLAVA +TI Y RE VIDF+KPFM LGI IL++ T
Sbjct: 62 GA-QNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKGTP- 119
Query: 253 PTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYE 292
+ LA + + A + T F ++ S YE
Sbjct: 120 ----IDSADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYE 155
>pdb|1YCJ|A Chain A, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1YCJ|B Chain B, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1VSO|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Antagonist (S)-Atpo At 1.85 A
Resolution
pdb|2PBW|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|2PBW|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|3GBA|A Chain A, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|B Chain B, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|C Chain C, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|D Chain D, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBB|A Chain A, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3GBB|B Chain B, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3S2V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|3S2V|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|4E0X|A Chain A, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4E0X|B Chain B, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4DLD|A Chain A, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
pdb|4DLD|B Chain B, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
Length = 257
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 85/107 (79%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448
SKI Y+KMW +M S++ S V + +EG++RVL DYA LMEST ++Y QRNCNLTQIG
Sbjct: 149 SKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIG 208
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
GL+DSKGYG+ TP GSP+RD+I++AIL+LQE+G + M+ +KWW+ G
Sbjct: 209 GLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 255
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 99/159 (62%), Gaps = 7/159 (4%)
Query: 135 NVTLIVMTREEKPYVMV-KNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N TLIV T E+PYVM K+D L GN FEG+C+DLLK ++ +GF + ++LVPD YG
Sbjct: 3 NRTLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYG 62
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQP 253
++ EWNG+VKEL+D +ADLAVA +TI Y RE VIDF+KPFM LGI IL++ T
Sbjct: 63 A-QNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKGTP-- 119
Query: 254 TRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYE 292
+ LA + + A + T F ++ S YE
Sbjct: 120 ---IDSADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYE 155
>pdb|1TXF|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core In
Complex With Glutamate At 2.1 Angstrom Resolution
pdb|3C31|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C31|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C32|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C32|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C33|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C33|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C34|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C34|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C35|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C35|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C36|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
pdb|3C36|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
Length = 258
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 85/107 (79%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448
SKI Y+KMW +M S++ S V + +EG++RVL DYA LMEST ++Y QRNCNLTQIG
Sbjct: 149 SKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIG 208
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
GL+DSKGYG+ TP GSP+RD+I++AIL+LQE+G + M+ +KWW+ G
Sbjct: 209 GLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 255
Score = 131 bits (330), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 100/160 (62%), Gaps = 7/160 (4%)
Query: 134 NNVTLIVMTREEKPYVMV-KNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTY 192
+N TLIV T E+PYVM K+D L GN FEG+C+DLLK ++ +GF + ++LVPD Y
Sbjct: 2 SNRTLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKY 61
Query: 193 GVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQ 252
G ++ EWNG+VKEL+D +ADLAVA +TI Y RE VIDF+KPFM LGI IL++ T
Sbjct: 62 GA-QNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKGTP- 119
Query: 253 PTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYE 292
+ LA + + A + T F ++ S YE
Sbjct: 120 ----IDSADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYE 155
>pdb|2WKY|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
pdb|2WKY|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
Length = 258
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 85/107 (79%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448
SKI Y+KMW +M S++ S V + +EG++RVL DYA LMEST ++Y QRNCNLTQIG
Sbjct: 149 SKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIG 208
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
GL+DSKGYG+ TP GSP+RD+I++AIL+LQE+G + M+ +KWW+ G
Sbjct: 209 GLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 255
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 99/159 (62%), Gaps = 7/159 (4%)
Query: 135 NVTLIVMTREEKPYVMV-KNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N TLIV T E+PYVM K+D L GN FEG+C+DLLK ++ +GF + ++LVPD YG
Sbjct: 3 NRTLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYG 62
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQP 253
++ EWNG+VKEL+D +ADLAVA +TI Y RE VIDF+KPFM LGI IL++ T
Sbjct: 63 A-QNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKGTP-- 119
Query: 254 TRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYE 292
+ LA + + A + T F ++ S YE
Sbjct: 120 ---IDSADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYE 155
>pdb|2ZNS|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With
Glutamate
pdb|2ZNT|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Dysiherbaine
pdb|2ZNU|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Neodysiherbaine A
pdb|3FUZ|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FUZ|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FV1|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV1|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV2|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FV2|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FVG|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVG|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVK|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVK|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVO|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
pdb|3FVO|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
Length = 256
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 85/107 (79%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448
SKI Y+KMW +M S++ + V + +EG++RVL DYA LMEST ++Y QRNCNLTQIG
Sbjct: 148 SKISTYEKMWAFMSSRQQTALVRNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIG 207
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
GL+DSKGYG+ TP GSP+RD+I++AIL+LQE+G + M+ +KWW+ G
Sbjct: 208 GLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNG 254
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 99/159 (62%), Gaps = 7/159 (4%)
Query: 135 NVTLIVMTREEKPYVMV-KNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N TLIV T E+PYVM K+D L GN FEG+C+DLLK ++ +GF + ++LVPD YG
Sbjct: 2 NRTLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFIYDVKLVPDGKYG 61
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQP 253
++ EWNG+VKEL+D +ADLAVA +TI Y RE VIDF+KPFM LGI IL++ T
Sbjct: 62 A-QNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKGTP-- 118
Query: 254 TRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYE 292
+ LA + + A + T F ++ S YE
Sbjct: 119 ---IDSADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYE 154
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 84/107 (78%), Gaps = 1/107 (0%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448
SKI ++KMW +M SK PS V + EEG++R L DYA LMEST ++Y QRNCNLTQIG
Sbjct: 149 SKISTFEKMWAFMSSK-PSALVKNNEEGIQRTLTADYALLMESTTIEYITQRNCNLTQIG 207
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
GL+DSKGYGI TP GSP+RD+I++AIL+LQE+ + ++ +KWW+ +G
Sbjct: 208 GLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLHIMKEKWWRGSG 254
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 98/160 (61%), Gaps = 7/160 (4%)
Query: 134 NNVTLIVMTREEKPYVMV-KNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTY 192
+N +LIV T E+P+VM K+D L GN FEG+CIDLLK +A +GF + +RLV D Y
Sbjct: 2 SNRSLIVTTLLEEPFVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKY 61
Query: 193 GVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQ 252
G D + +WNG+VKEL+D KADLAVA +TI + RE IDF+KPFM LG+ IL++ T
Sbjct: 62 GAQD-DKGQWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILYRKGTP- 119
Query: 253 PTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYE 292
+ LA + + A + T F ++ S +E
Sbjct: 120 ----IDSADDLAKQTKIEYGAVKDGATMTFFKKSKISTFE 155
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 84/107 (78%), Gaps = 1/107 (0%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448
SKI ++KMW +M SK PS V + EEG++R L DYA LMEST ++Y QRNCNLTQIG
Sbjct: 151 SKISTFEKMWAFMSSK-PSALVKNNEEGIQRTLTADYALLMESTTIEYITQRNCNLTQIG 209
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
GL+DSKGYGI TP GSP+RD+I++AIL+LQE+ + ++ +KWW+ +G
Sbjct: 210 GLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLHIMKEKWWRGSG 256
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 97/160 (60%), Gaps = 7/160 (4%)
Query: 134 NNVTLIVMTREEKPYVMV-KNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTY 192
N +LIV T E+P+VM K+D L GN FEG+CIDLLK +A +GF + +RLV D Y
Sbjct: 4 TNRSLIVTTLLEEPFVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKY 63
Query: 193 GVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQ 252
G D + +WNG+VKEL+D KADLAVA +TI + RE IDF+KPFM LG+ IL++ T
Sbjct: 64 GAQD-DKGQWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILYRKGTP- 121
Query: 253 PTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYE 292
+ LA + + A + T F ++ S +E
Sbjct: 122 ----IDSADDLAKQTKIEYGAVKDGATMTFFKKSKISTFE 157
>pdb|3TDJ|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TDJ|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TKD|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
pdb|3TKD|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
Length = 263
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 3 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 62
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI Y RE VIDF+KPFM+LGI I+ K T
Sbjct: 63 ARDADTKIWNGMVGELVYGKADIAIAPLTITYVREEVIDFSKPFMSLGISIMIKKGT 119
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 150 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 209
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWWYDKGE 260
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB8|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB9|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
pdb|1LB9|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
Length = 263
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 3 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 62
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI Y RE VIDF+KPFM+LGI I+ K T
Sbjct: 63 ARDADTKIWNGMVGELVYGKADIAIAPLTITYVREEVIDFSKPFMSLGISIMIKKGT 119
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 150 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 209
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 260
>pdb|1P1W|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
pdb|1P1W|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
Length = 263
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 3 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 62
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI Y RE VIDF+KPFM+LGI I+ K T
Sbjct: 63 ARDADTKIWNGMVGELVYGKADIAIAPLTITYVREEVIDFSKPFMSLGISIMIKKGT 119
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 150 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 209
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 260
>pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core
(Glur2) Complexed With Kainate
pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2i)
In Complex With Kainate At 1.6 A Resolution
Length = 279
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 15 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 74
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVP 249
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K P
Sbjct: 75 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKP 130
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 166 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 225
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 226 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 276
>pdb|3RNN|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
Length = 292
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 16 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 75
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 76 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 132
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 79/118 (66%), Gaps = 3/118 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 163 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 222
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGDVCNRDED 503
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+ + D
Sbjct: 223 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGD 280
>pdb|1MQH|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine At 1.8 Angstroms
Resolution
Length = 263
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 3 NKTVVVTTILESPYVMMKKNHEALEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 62
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 63 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 150 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 209
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 260
>pdb|2GFE|A Chain A, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|B Chain B, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|C Chain C, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
Length = 262
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 3 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 62
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 63 ARDEDTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 150 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 209
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 260
>pdb|3RN8|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
Length = 280
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 4 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 63
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 64 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 120
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 79/118 (66%), Gaps = 3/118 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 151 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 210
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGDVCNRDED 503
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+ + D
Sbjct: 211 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGD 268
>pdb|3DP6|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|C Chain C, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
Length = 279
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 19 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 78
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 79 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 135
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 166 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 225
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 226 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 276
>pdb|2XX7|A Chain A, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|B Chain B, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|C Chain C, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution
Length = 291
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 32 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 91
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 92 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 148
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 179 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 238
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 239 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWWYDKGE 289
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|B Chain B, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|C Chain C, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|3H6T|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|C Chain C, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6U|A Chain A, Crystal Structure Of The Iglur2 Ligand-binding Core
(s1s2j-n754s) In Complex With Glutamate And Ns1493 At
1.85 A Resolution
pdb|3H6V|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6V|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6W|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3H6W|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3KGC|A Chain A, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3KGC|B Chain B, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3BBR|A Chain A, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|3BBR|B Chain B, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|2XX9|A Chain A, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|B Chain B, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|C Chain C, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XXH|A Chain A, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|B Chain B, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|C Chain C, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXI|A Chain A, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|B Chain B, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|C Chain C, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XX8|A Chain A, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|B Chain B, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|C Chain C, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution
Length = 263
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 3 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 62
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 63 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 150 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 209
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWWYDKGE 260
>pdb|3O28|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 3 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 62
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 63 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 76/111 (68%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 150 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 209
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS ++LA+L+L E+G + L +KWW + G+
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLKNKWWYDKGE 260
>pdb|3B6W|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
Length = 263
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 3 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 62
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 63 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 150 SKIAVFDKMWTYMRSAEPSVFVRTSAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 209
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 260
>pdb|3O29|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O2A|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6G|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6H|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6I|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMV|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMW|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMX|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|4FAT|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 3 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 62
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 63 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 76/111 (68%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 150 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 209
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS ++LA+L+L E+G + L +KWW + G+
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLKNKWWYDKGE 260
>pdb|1P1N|A Chain A, Glur2 Ligand Binding Core (S1s2j) Mutant L650t In Complex
With Kainate
pdb|1P1O|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
Mutant L650t In Complex With Quisqualate
pdb|1P1Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1U|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
pdb|1P1U|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
Length = 263
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 3 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 62
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 63 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 150 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 209
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 260
>pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Kainate At 2.0 A Resolution
pdb|1FTJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTL|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTL|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTM|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTO|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTO|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5C|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Br-Hibo At 1.65 A Resolution
pdb|1M5E|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1MM6|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM6|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM7|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1N0T|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1NNK|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.85 A Resolution.
Crystallization With Zinc Ions.
pdb|1NNP|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1NNP|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1MS7|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MXU|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXV|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXW|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXX|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXY|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXZ|A Chain A, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|B Chain B, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|C Chain C, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MY0|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY1|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY2|A Chain A, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|B Chain B, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|C Chain C, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY3|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY4|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MQG|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQG|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQI|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Fluoro-willardiine At 1.35 Angstroms
Resolution
pdb|1MQJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Willardiine At 1.65 Angstroms Resolution
pdb|1SYH|A Chain A, X-ray Structure Of The Glur2 Ligand-binding Core (s1s2j)
In Complex With (s)-cpw399 At 1.85 A Resolution.
pdb|1WVJ|A Chain A, Exploring The Glur2 Ligand-Binding Core In Complex With
The Bicyclic Ampa Analogue (S)-4-Ahcp
pdb|2AIX|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Thio-Atpa At 2.2 A Resolution.
pdb|2AL4|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL5|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2AL5|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2CMO|A Chain A, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|2P2A|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|2P2A|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|3BKI|P Chain P, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BFU|A Chain A, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|B Chain B, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|C Chain C, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|D Chain D, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFT|A Chain A, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|B Chain B, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|C Chain C, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|2CMO|B Chain B, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|3TZA|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|3TZA|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|4G8M|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
pdb|4G8M|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
Length = 263
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 3 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 62
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 63 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 150 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 209
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 260
>pdb|2XHD|A Chain A, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
pdb|2XHD|B Chain B, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
Length = 263
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 3 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 62
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 63 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 150 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 209
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS R ++LA+L+L E+G + L +KWW + G+
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLRTPVNLAVLKLSEQGVLDKLKNKWWYDKGE 260
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain
Mutant (s1s2j-n754d) In Complex With Kainate At 2.1 A
Resolution
Length = 263
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 3 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 62
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 63 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 150 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 209
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLDEQGLLDKLKNKWWYDKGE 260
>pdb|3B6T|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686a Mutant In Complex With Quisqualate At 2.1
Resolution
pdb|3B6Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
Mutant T686a In Complex With Glutamate At 2.0 Resolution
Length = 263
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 3 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 62
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 63 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 150 SKIAVFDKMWTYMRSAEPSVFVRTAAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 209
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 260
>pdb|1MQD|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|3B7D|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|G Chain G, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|H Chain H, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
Length = 261
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 3 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 62
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 63 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 150 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 209
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 260
>pdb|3PD8|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|C Chain C, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
Length = 261
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 2 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 61
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 62 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 118
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 149 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 208
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 209 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 259
>pdb|2UXA|A Chain A, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|B Chain B, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|C Chain C, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED
Length = 261
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 2 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 61
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 62 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 118
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 149 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 208
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS R ++LA+L+L E+G + L +KWW + G+
Sbjct: 209 KVGGNLDSKGYGIATPKGSSLRTPVNLAVLKLSEQGVLDKLKNKWWYDKGE 259
>pdb|1M5D|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Br-hibo At 1.73 A Resolution
pdb|1M5F|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|B Chain B, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|C Chain C, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1SYI|A Chain A, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1SYI|B Chain B, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1XHY|A Chain A, X-ray Structure Of The Y702f Mutant Of The Glur2
Ligand-binding Core (s1s2j) In Complex With Kainate At
1.85 A Resolution
Length = 263
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 3 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 62
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 63 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YAFL+ESTM +Y QR C+
Sbjct: 150 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAFLLESTMNEYIEQRKPCDTM 209
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 260
>pdb|3PD9|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
pdb|3PD9|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
Length = 260
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 1 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 60
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 61 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 117
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 148 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 207
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 208 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 258
>pdb|3R7X|A Chain A, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3R7X|B Chain B, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3UA8|A Chain A, Crystal Structure Analysis Of A 6-Amino Quinazolinedione
Sulfonamide Bound To Human Glur2
Length = 263
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 3 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 62
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 63 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 78/111 (70%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 150 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 209
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS R+ ++LA+L+L E+G + L +KWW + G+
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLRNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 260
>pdb|2I3V|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|C Chain C, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|D Chain D, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
Length = 259
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 1 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 60
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 61 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 117
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 76/111 (68%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 148 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 207
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++G LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 208 KVGCNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 258
>pdb|2I3W|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
pdb|2I3W|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
Length = 259
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 1 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 60
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 61 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 117
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 76/111 (68%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 148 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 207
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LD KGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 208 KVGGNLDCKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 258
>pdb|3T9X|B Chain B, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|D Chain D, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|F Chain F, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 76/115 (66%), Gaps = 1/115 (0%)
Query: 137 TLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVY 195
T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 2 TVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGAR 61
Query: 196 DHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 62 DADTKIWNGMVGELVYGKADIAIAPLTITLCREEVIDFSKPFMSLGISIMIKKGT 116
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 77/112 (68%), Gaps = 3/112 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 147 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 206
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGDV 497
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 207 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 258
>pdb|3KEI|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KEI|B Chain B, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KFM|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Kainate
Length = 257
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 84/134 (62%), Gaps = 7/134 (5%)
Query: 370 LGGQGDETFVTIDLSQRAD----SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--G 423
L Q + + T+D + SKI +Y+KMW YM S PSVF EGV RV + G
Sbjct: 123 LAKQTEIAYGTVDSGSTKEFFRRSKIAVYEKMWTYMRSAEPSVFTRTTAEGVARVRKSKG 182
Query: 424 DYAFLMESTMLDYEVQRN-CNLTQIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGT 482
+AFL+ESTM +Y QR C+ ++GG LDSKGYG+ATPKGS R ++LA+L+L E G
Sbjct: 183 KFAFLLESTMNEYTEQRKPCDTMKVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGV 242
Query: 483 IQMLYDKWWKNTGD 496
+ L +KWW + G+
Sbjct: 243 LDKLKNKWWYDKGE 256
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 75/115 (65%), Gaps = 1/115 (0%)
Query: 137 TLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVY 195
T++V T E PYVM K N GN +EG+C+DL IA +G + + +VPD YG
Sbjct: 1 TVVVTTIMESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGAR 60
Query: 196 DHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KA++A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 61 DADTKIWNGMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 115
>pdb|3IJO|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJX|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|D Chain D, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IK6|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IL1|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3ILT|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILU|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3LSF|B Chain B, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|E Chain E, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|H Chain H, Piracetam Bound To The Ligand Binding Domain Of Glua2
Length = 258
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 76/115 (66%), Gaps = 1/115 (0%)
Query: 137 TLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVY 195
T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 2 TVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGAR 61
Query: 196 DHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 62 DADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 116
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 147 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 206
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 207 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWWYDKGE 257
>pdb|3EN3|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Kainate
pdb|3EPE|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
pdb|3EPE|B Chain B, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
Length = 257
Score = 118 bits (295), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 76/111 (68%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI +Y+KMW YM S PSVF EGV RV + G +AFL+ESTM +Y QR C+
Sbjct: 146 SKIAVYEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGKFAFLLESTMNEYTEQRKPCDTM 205
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYG+ATPKGS R ++LA+L+L E G + L +KWW + G+
Sbjct: 206 KVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDKGE 256
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 75/115 (65%), Gaps = 1/115 (0%)
Query: 137 TLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVY 195
T++V T E PYVM K N GN +EG+C+DL IA +G + + +VPD YG
Sbjct: 1 TVVVTTIMESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGAR 60
Query: 196 DHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KA++A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 61 DADTKIWNGMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 115
>pdb|3T93|B Chain B, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|D Chain D, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|F Chain F, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T96|B Chain B, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|D Chain D, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|F Chain F, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9H|B Chain B, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|D Chain D, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|F Chain F, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9U|A Chain A, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|B Chain B, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|C Chain C, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|A Chain A, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|B Chain B, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 118 bits (295), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 76/115 (66%), Gaps = 1/115 (0%)
Query: 137 TLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVY 195
T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 2 TVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGCR 61
Query: 196 DHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 62 DADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 116
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 85/134 (63%), Gaps = 7/134 (5%)
Query: 370 LGGQGDETFVTIDLSQRAD----SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--G 423
L Q + + T+D + SKI ++ KMW YM S PSVFV EGV RV + G
Sbjct: 124 LSKQTEIAYGTLDCGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKG 183
Query: 424 DYAFLMESTMLDYEVQRN-CNLTQIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGT 482
YA+L+ESTM +Y QR C+ ++GG LDSKGYGIATPKGS + ++LA+L+L E+G
Sbjct: 184 KYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGL 243
Query: 483 IQMLYDKWWKNTGD 496
+ L +KWW + G+
Sbjct: 244 LDKLKNKWWYDKGE 257
>pdb|3H03|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|D Chain D, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H06|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|E Chain E, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|H Chain H, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|J Chain J, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|L Chain L, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|N Chain N, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|P Chain P, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3LSL|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|D Chain D, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|G Chain G, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3M3L|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|D Chain D, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|G Chain G, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3RTF|B Chain B, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|D Chain D, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|F Chain F, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|B Chain B, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|D Chain D, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|F Chain F, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|4GXS|B Chain B, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
pdb|4GXS|D Chain D, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
Length = 258
Score = 118 bits (295), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 76/115 (66%), Gaps = 1/115 (0%)
Query: 137 TLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVY 195
T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 2 TVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGAR 61
Query: 196 DHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 62 DADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 116
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 147 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 206
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 207 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 257
>pdb|2ANJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y450w) Mutant In Complex With The Partial Agonist Kainic
Acid At 2.1 A Resolution
Length = 263
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K N L GN +EG+C+DL IA GF + L +V D +G
Sbjct: 3 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKWG 62
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 63 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI ++ KMW YM S PSVFV EGV RV + G YA+L+ESTM +Y QR C+
Sbjct: 150 SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTM 209
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYGIATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 260
>pdb|3FAT|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|C Chain C, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAS|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
pdb|3FAS|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
Length = 260
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 76/111 (68%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI +Y+KMW YM S PSVF EGV RV + G +AFL+ESTM +Y QR C+
Sbjct: 148 SKIAVYEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTM 207
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYG+ATPKGS R ++LA+L+L E G + L +KWW + G+
Sbjct: 208 KVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDKGE 258
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 75/115 (65%), Gaps = 1/115 (0%)
Query: 137 TLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVY 195
T++V T E PYVM K N GN +EG+C+DL IA +G + + +VPD YG
Sbjct: 3 TVVVTTIMESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGAR 62
Query: 196 DHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D +TK WNG+V EL+ KA++A+A +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 63 DADTKIWNGMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 117
>pdb|3DP4|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Ampa
pdb|3DLN|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Glutamate
Length = 278
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 135 NVTLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM K N L GN +EG+C+DL IA V + L +V D YG
Sbjct: 19 NRTIVVTTILESPYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYG 78
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D ETK WNG+V EL+ +AD+AVA +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 79 ARDPETKIWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 135
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI +Y+KMW YM+S PSVF +GV RV + G +AFL+ESTM +Y QR C+
Sbjct: 166 SKIAVYEKMWSYMKSAEPSVFTKTTADGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTM 225
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYG+ATPKGS ++LA+L+L E+G + L +KWW + G+
Sbjct: 226 KVGGNLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKWWYDKGE 276
>pdb|4F2O|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F2Q|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F31|B Chain B, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F31|D Chain D, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F3B|A Chain A, Glutamate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
Query: 137 TLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVY 195
T++V T E PYVM K N L GN +EG+C+DL IA V + L +V D YG
Sbjct: 2 TIVVTTILESPYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGAR 61
Query: 196 DHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D ETK WNG+V EL+ +AD+AVA +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 62 DPETKIWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 116
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 78/111 (70%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI +Y+KMW YM+S PSVF +GV RV + G +AFL+ESTM +Y QR C+
Sbjct: 147 SKIAVYEKMWSYMKSAEPSVFTKTTADGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTM 206
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYG+ATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 207 KVGGNLDSKGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 257
>pdb|3LSW|A Chain A, Aniracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3LSX|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3RT6|B Chain B, Fluorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|3RT8|A Chain A, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|4F29|A Chain A, Quisqualate Bound To The Ligand Binding Domain Of Glua3i
pdb|4F39|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3
pdb|4F3G|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3i
Length = 258
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
Query: 137 TLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVY 195
T++V T E PYVM K N L GN +EG+C+DL IA V + L +V D YG
Sbjct: 2 TIVVTTILESPYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGAR 61
Query: 196 DHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D ETK WNG+V EL+ +AD+AVA +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 62 DPETKIWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 116
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI +Y+KMW YM+S PSVF +GV RV + G +AFL+ESTM +Y QR C+
Sbjct: 147 SKIAVYEKMWSYMKSAEPSVFTKTTADGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTM 206
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYG+ATPKGS ++LA+L+L E+G + L +KWW + G+
Sbjct: 207 KVGGNLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKWWYDKGE 257
>pdb|3M3F|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua3 (Flop
Form)
pdb|3M3K|A Chain A, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|C Chain C, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|E Chain E, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|4F1Y|A Chain A, Cnqx Bound To The Ligand Binding Domain Of Glua3
pdb|4F1Y|C Chain C, Cnqx Bound To The Ligand Binding Domain Of Glua3
Length = 258
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
Query: 137 TLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVY 195
T++V T E PYVM K N L GN +EG+C+DL IA V + L +V D YG
Sbjct: 2 TIVVTTILESPYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGAR 61
Query: 196 DHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D ETK WNG+V EL+ +AD+AVA +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 62 DPETKIWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 116
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 78/111 (70%), Gaps = 3/111 (2%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--GDYAFLMESTMLDYEVQRN-CNLT 445
SKI +Y+KMW YM+S PSVF +GV RV + G +AFL+ESTM +Y QR C+
Sbjct: 147 SKIAVYEKMWSYMKSAEPSVFTKTTADGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTM 206
Query: 446 QIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGD 496
++GG LDSKGYG+ATPKGS + ++LA+L+L E+G + L +KWW + G+
Sbjct: 207 KVGGNLDSKGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE 257
>pdb|4F22|A Chain A, Kainate Bound To The K660a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
Query: 137 TLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVY 195
T++V T E PYVM K N L GN +EG+C+DL IA V + L +V D YG
Sbjct: 2 TIVVTTILESPYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGAR 61
Query: 196 DHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
D ETK WNG+V EL+ +AD+AVA +TI RE VIDF+KPFM+LGI I+ K T
Sbjct: 62 DPETKIWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 116
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 86/134 (64%), Gaps = 7/134 (5%)
Query: 370 LGGQGDETFVTIDLSQRAD----SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLE--G 423
L Q + + T+D A+ SKI +Y+KMW YM+S PSVF +GV RV + G
Sbjct: 124 LAKQTEIAYGTLDSGSTAEFFRRSKIAVYEKMWSYMKSAEPSVFTKTTADGVARVRKSKG 183
Query: 424 DYAFLMESTMLDYEVQRN-CNLTQIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGT 482
+AFL+ESTM +Y QR C+ ++GG LDSKGYG+ATPKGS ++LA+L+L E+G
Sbjct: 184 KFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALGTPVNLAVLKLSEQGI 243
Query: 483 IQMLYDKWWKNTGD 496
+ L +KWW + G+
Sbjct: 244 LDKLKNKWWYDKGE 257
>pdb|2V3U|A Chain A, Structure Of The Ligand-binding Core Of The Ionotropic
Glutamate Receptor-like Glurdelta2 In Complex With D-
Serine
Length = 265
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 75/116 (64%), Gaps = 2/116 (1%)
Query: 136 VTLIVMTREEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVY 195
V L V+T E+P+VMV + L ++GF ID+L +++ +GF++ + + PDH YG
Sbjct: 3 VVLRVVTVLEEPFVMVSENV-LGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGS- 60
Query: 196 DHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTS 251
E WNG+V EL+ K+AD+ ++++TI RE+V+DFT +M+ +G+L + TS
Sbjct: 61 PQEDGTWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTS 116
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Query: 393 IYQKMWRYMESKRPSVF-VSDYEEGVKRVLEGDYAFLMESTMLDYEV--QRNCNLTQIGG 449
+Y +MWR + S V + + G+++V G+YAF+ ++ +L+Y +C+ +G
Sbjct: 156 MYSQMWRMINRSNGSENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINDPDCSFYTVGN 215
Query: 450 LLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
+ +GYGIA GSP+RD S ILELQ+ G + +L KWW G
Sbjct: 216 TVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNG 261
>pdb|2V3T|A Chain A, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
pdb|2V3T|B Chain B, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
Length = 265
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 136 VTLIVMTREEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVY 195
V L V+T E+P+V V + L ++GF ID+L +++ +GF++ + + PDH YG
Sbjct: 3 VVLRVVTVLEEPFVXVSENV-LGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGS- 60
Query: 196 DHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTS 251
E WNG+V EL+ K+AD+ ++++TI RE+V+DFT + + +G+L + TS
Sbjct: 61 PQEDGTWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYXDYSVGVLLRRGTS 116
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 394 YQKMWRYMESKRPSVF-VSDYEEGVKRVLEGDYAFLMESTMLDYEV--QRNCNLTQIGGL 450
Y + WR + S V + + G+++V G+YAF+ ++ +L+Y +C+ +G
Sbjct: 157 YSQXWRXINRSNGSENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINDPDCSFYTVGNT 216
Query: 451 LDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
+ +GYGIA GSP+RD S ILELQ+ G +L KWW G
Sbjct: 217 VADRGYGIALQHGSPYRDVFSQRILELQQSGDXDILKHKWWPKNG 261
>pdb|2RC7|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RC8|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC8|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC9|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC9|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC7|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 294
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 165 GFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTIN 224
G+CIDLL+ +A + F F L +V D YG + + W G+V +L+ A++AV S +IN
Sbjct: 70 GYCIDLLEQLAEDMNFDFDLYIVGDGKYGAW--KNGHWTGLVGDLLSGTANMAVTSFSIN 127
Query: 225 YARESVIDFTKPFMNLGIGILFKV 248
AR VIDFT PF + +GIL +
Sbjct: 128 TARSQVIDFTSPFFSTSLGILVRT 151
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 392 EIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQ--RNCNLTQIGG 449
E+++ M RY P D + +K E AF+M+ +LDYEV +C L +G
Sbjct: 191 EMHEYMRRYNVPATP-----DGVQYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGK 245
Query: 450 LLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWK 492
+GYGI P SP IS I + + G + +L+DKW+K
Sbjct: 246 PFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYK 288
>pdb|1PB8|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Serine At 1.45 Angstroms Resolution
pdb|1PB9|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Cycloserine At 1.60 Angstroms Resolution
Length = 292
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 8/102 (7%)
Query: 165 GFCIDLLKSIAAQVGFHFVLRLVPDHTYG----VYDHETKEWNGIVKELMDKKADLAVAS 220
GFCIDLL +A + F + + LV D +G V + KEWNG++ EL+ +AD+ VA
Sbjct: 65 GFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAP 124
Query: 221 MTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNP 262
+TIN R I+F+KPF G+ IL K + TR+ +P
Sbjct: 125 LTINTERAQYIEFSKPFKYQGLTILVK----KGTRITGINDP 162
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 12/99 (12%)
Query: 397 MWRYMESKRPSVFVSDYE---EGVKRVLEGD-YAFLMESTMLDYEVQRNCNLTQIGGLLD 452
M+R+ME +YE E ++ V + +AF+ +S +L++E + C+L G L
Sbjct: 194 MYRHMEK-------HNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFF 246
Query: 453 SKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWW 491
G+GI K SPW+ +SL+IL+ E G ++ L DK W
Sbjct: 247 RSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDL-DKTW 284
>pdb|1PB7|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Glycine At 1.35 Angstroms Resolution
pdb|1PBQ|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1PBQ|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1Y1M|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1M|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1Z|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Acbc
pdb|1Y20|A Chain A, Crystal Structure Of The Nr1 Ligand-binding Core In
Complex With Acpc
pdb|2A5T|A Chain A, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 292
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 8/102 (7%)
Query: 165 GFCIDLLKSIAAQVGFHFVLRLVPDHTYG----VYDHETKEWNGIVKELMDKKADLAVAS 220
GFCIDLL +A + F + + LV D +G V + KEWNG++ EL+ +AD+ VA
Sbjct: 65 GFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAP 124
Query: 221 MTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNP 262
+TIN R I+F+KPF G+ IL K + TR+ +P
Sbjct: 125 LTINNERAQYIEFSKPFKYQGLTILVK----KGTRITGINDP 162
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 12/99 (12%)
Query: 397 MWRYMESKRPSVFVSDYE---EGVKRVLEGD-YAFLMESTMLDYEVQRNCNLTQIGGLLD 452
M+R+ME +YE E ++ V + +AF+ +S +L++E + C+L G L
Sbjct: 194 MYRHMEK-------HNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFF 246
Query: 453 SKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWW 491
G+GI K SPW+ +SL+IL+ E G ++ L DK W
Sbjct: 247 RSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDL-DKTW 284
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Aspartate
pdb|3OEL|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With D- Glutamate
pdb|3OEM|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With N- Methyl-D-Aspartate
pdb|3OEN|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Glutamate
Length = 286
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 29/135 (21%)
Query: 138 LIVMTREEKPYVMVKNDANLTGNAM---------------------------FEGFCIDL 170
L V T EE+P+V+V+ ++G + +GFCID+
Sbjct: 7 LTVATLEERPFVIVEPADPISGTCIRDSVPCRSQLNRTHSPPPDAPRPEKRCCKGFCIDI 66
Query: 171 LKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARESV 230
LK +A +GF + L LV + +G WNG++ E+ ++AD+A+ S+TIN R +
Sbjct: 67 LKRLAHTIGFSYDLYLVTNGKHG--KKIDGVWNGMIGEVFYQRADMAIGSLTINEERSEI 124
Query: 231 IDFTKPFMNLGIGIL 245
+DF+ PF+ GI ++
Sbjct: 125 VDFSVPFVETGISVM 139
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 394 YQKMWRYM-ESKRPSVFVSDYEEGVKRVLEGDY-AFLMESTMLDYEVQRN--CNLTQIGG 449
Y M YM +P V EE + ++ G AF+ ++ +L+Y +++ C L IG
Sbjct: 182 YPDMHSYMVRYNQPRV-----EEALTQLKAGKLDAFIYDAAVLNYMARKDEGCKLVTIGS 236
Query: 450 --LLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKW 490
+ + GYGIA KGS W+ I LA+L+ I+ML W
Sbjct: 237 GKVFATTGYGIALHKGSRWKRPIDLALLQFLGDDEIEMLERLW 279
>pdb|2RCA|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RCB|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCB|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCA|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 292
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 18/127 (14%)
Query: 165 GFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTIN 224
G+CIDLL+ +A + F F L +V D YG W G+V +L+ +A +AV S +IN
Sbjct: 68 GYCIDLLERLAEDLAFDFELYIVGDGKYGAL--RDGRWTGLVGDLLAGRAHMAVTSFSIN 125
Query: 225 YARESVIDFTKPFMNLGIGILFKVPTSQ-----------PTRLFSFMNPLAVEIWLYVLA 273
AR V+DFT PF + +GI+ + ++ P++ F F +W
Sbjct: 126 SARSQVVDFTSPFFSTSLGIMVRTRGTELSGIHDPKLHHPSQGFRFGT-----VWESSAE 180
Query: 274 AYLLVSF 280
AY+ SF
Sbjct: 181 AYIKASF 187
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 426 AFLMESTMLDYEVQ--RNCNLTQIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTI 483
AF+M+ ++LDYEV +C L +G +GYGI P+ SP +S I + G I
Sbjct: 218 AFIMDKSLLDYEVSIDADCKLLTVGKPFAIEGYGIGLPQNSPLTSNLSEFISRYKSSGFI 277
Query: 484 QMLYDKWWK 492
+L+DKW+K
Sbjct: 278 DLLHDKWYK 286
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 137 TLIVMTREEKPYVMVKNDANLTGNA--MFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGV 194
T + T + +V + N N N +GFCID+LK ++ V F + L LV + +G
Sbjct: 29 TCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHG- 87
Query: 195 YDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGIL 245
WNG++ E++ ++A +AV S+TIN R V+DF+ PF+ GI ++
Sbjct: 88 -KKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVM 137
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 426 AFLMESTMLDYEVQRN--CNLTQIGG--LLDSKGYGIATPKGSPWRDRISLAILELQEKG 481
AF+ ++ +L+Y+ R+ C L IG + + GYGIA KGSPW+ +I LA+L+ G
Sbjct: 209 AFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDG 268
Query: 482 TIQMLYDKW 490
++ L W
Sbjct: 269 EMEELETLW 277
>pdb|2PYY|A Chain A, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|C Chain C, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|B Chain B, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
Length = 228
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 447 IGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWW 491
+G +L + YGI P SP+R I+ A+L L+E GT Q LYDKW+
Sbjct: 177 VGSILREESYGIILPNNSPYRKPINQALLNLKENGTYQSLYDKWF 221
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 19/110 (17%)
Query: 138 LIVMTREEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDH 197
L+V TR P+V L+ GF IDL +SIA Q+G L
Sbjct: 5 LLVATRVIPPFV-------LSNKGELSGFSIDLWRSIATQIGIESKL------------I 45
Query: 198 ETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFK 247
E ++ + D K +L +A+++I RE DF+ P G+ I+ +
Sbjct: 46 EYSSVPELISAIKDNKVNLGIAAISITAEREQNFDFSLPIFASGLQIMVR 95
>pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6G|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6H|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3H6H|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3QLV|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|F Chain F, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|H Chain H, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|J Chain J, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 395
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 26/118 (22%)
Query: 30 LEVPWRDGLSLYNYINTAEPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGL 89
L+ P + L + T + ALMYD+VHV++ + + +V S+L C+ PWR G
Sbjct: 270 LQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTV---SSLQCNRHKPWRFGT 326
Query: 90 SLYNYINT-----------------------LDXXXXXXXXXXXVGHWTPAEGINITD 124
+ I LD +G W PA G+N+T+
Sbjct: 327 RFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTE 384
>pdb|3QLT|A Chain A, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLT|B Chain B, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLU|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
Length = 395
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 26/118 (22%)
Query: 30 LEVPWRDGLSLYNYINTAEPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGL 89
L+ P + L + T + ALMYD+VHV++ + + +V S+L C+ PWR G
Sbjct: 270 LQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTV---SSLQCNRHKPWRFGT 326
Query: 90 SLYNYINT-----------------------LDXXXXXXXXXXXVGHWTPAEGINITD 124
+ I LD +G W PA G+N+T+
Sbjct: 327 RFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTE 384
>pdb|1GGG|A Chain A, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1GGG|B Chain B, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1WDN|A Chain A, Glutamine-Binding Protein
Length = 226
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 441 NCNLTQIGGLLDSKGYGIATPKGS-PWRDRISLAILELQEKGTIQMLYDKWW 491
N +G L+++ YGIA PKGS RD+++ A+ L+E GT +Y KW+
Sbjct: 170 NGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGTYNEIYKKWF 221
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 13/87 (14%)
Query: 162 MFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASM 221
++ GF +DL +IA ++ + L+ + +++GI+ L K DLA+A +
Sbjct: 23 LYVGFDVDLWAAIAKELKLDYELKPM-------------DFSGIIPALQTKNVDLALAGI 69
Query: 222 TINYARESVIDFTKPFMNLGIGILFKV 248
TI R+ IDF+ + G+ ++ K
Sbjct: 70 TITDERKKAIDFSDGYYKSGLLVMVKA 96
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO2|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO3|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO3|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO4|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO4|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO5|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO5|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO6|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO6|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO7|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
pdb|4IO7|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
Length = 248
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 11/117 (9%)
Query: 136 VTLIVMTREEKPYVMVKNDANLTG--NAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
+TL + E P+ +V N + +G G+ +DL++ + ++GF ++L P +T
Sbjct: 8 ITLRIGVIESVPFTIVANVIDTSGRNTTKLTGYVLDLIEYLRDKMGFVADVQLAPPNT-- 65
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPT 250
+ G+V L + D+A+ +T+ AR ++ F+ + + IL + T
Sbjct: 66 -------SYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMRILMRKGT 115
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 442 CNLTQIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWK 492
CNLT +G D +GI TPK + + + IL L+E G + L KW++
Sbjct: 193 CNLTLVGEDFDKSTFGIVTPKEWLYAKDLDVNILSLRETGILDNLKKKWFQ 243
>pdb|3OM0|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Crystallographic
Dimer At 1.4 Angstrom Resolution
pdb|3OM1|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3OM1|B Chain B, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3QLU|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLV|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|E Chain E, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|G Chain G, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|I Chain I, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 393
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 30 LEVPWRDGLSLYNYINTA-EPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDG 88
L + WR+ Y A ALM+D+VHV+ + + L++S I L+C W G
Sbjct: 265 LNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQEIGVKPLACTSANIWPHG 324
Query: 89 LSLYNYINTLD 99
SL NY+ ++
Sbjct: 325 TSLMNYLRMVE 335
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 1 MYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGLSLYNYINTAE 48
M+D+VHV+ + + L++S I L+C W G SL NY+ E
Sbjct: 288 MFDAVHVVVSAVRELNRSQEIGVKPLACTSANIWPHGTSLMNYLRMVE 335
>pdb|3K4U|A Chain A, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|B Chain B, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|C Chain C, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|D Chain D, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|E Chain E, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|F Chain F, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
Length = 245
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 15/89 (16%)
Query: 159 GNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAV 218
GN + GF +DL + A G L+LVP W+G++ L+ +K D+ +
Sbjct: 25 GNVI--GFDVDLAREXAKAXGVK--LKLVP-----------TSWDGLIPGLVTEKFDIII 69
Query: 219 ASMTINYARESVIDFTKPFMNLGIGILFK 247
+ TI+ R ++F +P++ +G +L K
Sbjct: 70 SGXTISQERNLRVNFVEPYIVVGQSLLVK 98
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 26/118 (22%)
Query: 30 LEVPWRDGLSLYNYINTAEPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGL 89
L+ R L + + + AL+YD+VH+++ ++ + ++L C WR G
Sbjct: 273 LQAAPRAESGLLDGVMMTDAALLYDAVHIVSV---CYQRAPQMTVNSLQCHRHKAWRFGG 329
Query: 90 SLYNYINT-----------------------LDXXXXXXXXXXXVGHWTPAEGINITD 124
N+I LD VG W+PA+G+NIT+
Sbjct: 330 RFMNFIKEAQWEGLTGRIVFNKTSGLRTDFDLDIISLKEDGLEKVGVWSPADGLNITE 387
>pdb|4F3P|A Chain A, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
pdb|4F3P|B Chain B, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
Length = 249
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 163 FEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMT 222
+ GF +DL IA G+ Y + ++ G++ L + D+A++ MT
Sbjct: 45 YVGFDLDLWAEIAKGAGW-------------TYKIQPMDFAGLIPALQTQNIDVALSGMT 91
Query: 223 INYARESVIDFTKPFMNLGIGILFKV 248
I R IDF+ P+ + G+ + +
Sbjct: 92 IKEERRKAIDFSDPYYDSGLAAMVQA 117
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 448 GGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWW 491
G + YGI PKGSP +++ + ++ G +Y KW+
Sbjct: 198 GAPVSGDKYGIGFPKGSPLVAKVNAELARMKADGRYAKIYKKWF 241
>pdb|4DZ1|A Chain A, Crystal Structure Of Dals, An Atp Binding Cassette
Transporter For D- Alanine From Salmonella Enterica
Length = 259
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 202 WNGIVKELMDKKADLAVASMTINYARESVIDFTKPF 237
W+G + + +AD+A + ++I R+ VIDF++P+
Sbjct: 77 WDGXLGAVASGQADVAFSGISITDKRKKVIDFSEPY 112
>pdb|4F3S|A Chain A, Crystal Structure Of Periplasmic D-Alanine Abc Transporter
From Salmonella Enterica
Length = 255
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 202 WNGIVKELMDKKADLAVASMTINYARESVIDFTKPF 237
W+G + + +AD+A + ++I R+ VIDF++P+
Sbjct: 57 WDGXLGAVASGQADVAFSGISITDKRKKVIDFSEPY 92
>pdb|3KBR|A Chain A, The Crystal Structure Of Cyclohexadienyl Dehydratase
Precursor From Pseudomonas Aeruginosa Pa01
Length = 239
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 158 TGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLA 217
T + GF +D + +A +G V+ VP W + ++ D + D+A
Sbjct: 32 TEEGGYAGFDVDXAQRLAESLGAKLVV--VP-----------TSWPNLXRDFADDRFDIA 78
Query: 218 VASMTINYARESVIDFTKPFMNLG 241
+ ++IN R+ F+ P++ G
Sbjct: 79 XSGISINLERQRQAYFSIPYLRDG 102
>pdb|3I6V|A Chain A, Crystal Structure Of A Periplasmic HisGLUGLNARGOPINE
FAMILY- Binding Protein From Silicibacter Pomeroyi In
Complex With Lysine
Length = 232
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 200 KEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFM 238
+W+ I+ L+ D +A M+I R+ VIDFT+ ++
Sbjct: 51 NDWDSIIPNLVSGNYDTIIAGMSITDERDEVIDFTQNYI 89
>pdb|3MPL|A Chain A, Crystal Structure Of Bordetella Pertussis Bvgs Vft2 Domain
(Double Mutant F375eQ461E)
Length = 267
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 205 IVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQP 253
++ +L +AD+A ++ +N ARES + F++P++ G+ I+ + P
Sbjct: 84 LIAKLRSGEADMA-GALEVNSARESFLSFSRPYVRNGMVIVTRQDPDAP 131
>pdb|4H5F|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|C Chain C, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|D Chain D, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5G|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 2
pdb|4H5G|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 2
Length = 243
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 15/88 (17%)
Query: 159 GNAMFEGFCIDLLKSIAAQVGFHF-VLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLA 217
G G ID+ ++IA ++G +L + ++ ++ L KADLA
Sbjct: 33 GKNQVVGADIDMAQAIADELGVKLEILSM--------------SFDNVLTSLQTGKADLA 78
Query: 218 VASMTINYARESVIDFTKPFMNLGIGIL 245
VA ++ R+ V DF+ P+ I L
Sbjct: 79 VAGISATDERKEVFDFSIPYYENKISFL 106
>pdb|4I62|A Chain A, 1.05 Angstrom Crystal Structure Of An Amino Acid Abc
Transporter Substrate-Binding Protein From Streptococcus
Pneumoniae Canada Mdr_19a Bound To L-Arginine
Length = 269
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 159 GNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAV 218
G G I+L K+IA ++G L L P ++ ++ + KADLA+
Sbjct: 60 GKNQIVGSDIELAKAIATELGVE--LELSP-----------MSFDNVLASVQSGKADLAI 106
Query: 219 ASMTINYARESVIDFTKPF 237
+ ++ R V DF+ P+
Sbjct: 107 SGVSKTDERSKVFDFSTPY 125
>pdb|3MPK|A Chain A, Crystal Structure Of Bordetella Pertussis Bvgs Periplasmic
Vft2 Domain
Length = 267
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 205 IVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQP 253
++ +L +AD+A ++ +N ARES + F++P++ G+ I+ + P
Sbjct: 84 LIAKLRSGEADMA-GALFVNSARESFLSFSRPYVRNGMVIVTRQDPDAP 131
>pdb|3TQL|A Chain A, Structure Of The Amino Acid Abc Transporter, Periplasmic
Amino Acid- Binding Protein From Coxiella Burnetii
Length = 227
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 13/78 (16%)
Query: 160 NAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVA 219
+ EGF D++K++ Q V + W+ ++ L K D
Sbjct: 21 SGQVEGFGADIVKAVCKQ-------------XQAVCTISNQPWDSLIPSLKLGKFDALFG 67
Query: 220 SMTINYARESVIDFTKPF 237
I AR+ +DFT P+
Sbjct: 68 GXNITTARQKEVDFTDPY 85
>pdb|2YJP|A Chain A, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|B Chain B, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|C Chain C, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
Length = 291
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 160 NAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVA 219
N +GF +++ K +A L PD V E V+ + K DL +A
Sbjct: 74 NGKNQGFDVEIAKDLAKD------LLGSPDKVEFVL----TEAANRVEYVRSGKVDLILA 123
Query: 220 SMTINYARESVIDFTKPFMNLGIGILFKVPTSQP 253
+ T R +DF P+M + +G++ P ++P
Sbjct: 124 NFTQTPERAEAVDFADPYMKVALGVV--SPKNKP 155
>pdb|1GCY|A Chain A, High Resolution Crystal Structure Of Maltotetraose-Forming
Exo-Amylase
Length = 527
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 111 VGHWTPAEGINITDRSAFYETSTNNVTLIVMTREEKPYVMVKNDANLTGNAMFEGFCIDL 170
+G+W+PA + +TD S Y T ++ L EE +++N+AN T ++G +
Sbjct: 457 LGNWSPAAALRLTDTSG-YPTWKGSIALPAGQNEEWK-CLIRNEANATQVRQWQGGANNS 514
Query: 171 L 171
L
Sbjct: 515 L 515
>pdb|1M6C|A Chain A, V68n Myoglobin With Co
pdb|1M6C|B Chain B, V68n Myoglobin With Co
pdb|1M6M|A Chain A, V68n Met Myoglobin
pdb|1M6M|B Chain B, V68n Met Myoglobin
pdb|1MDN|A Chain A, Wild Type Myoglobin With Co
pdb|1MDN|B Chain B, Wild Type Myoglobin With Co
pdb|1MNO|A Chain A, V68n Myoglobin Oxy Form
pdb|1MNO|B Chain B, V68n Myoglobin Oxy Form
Length = 153
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 435 DYEVQRNCNLTQIGGLLDSKGYGIA--TP--KGSPWRDRISLAILELQEKGTIQMLYDK 489
D + N NLT +GG+L KG+ A TP + + +I + LE + IQ+L K
Sbjct: 60 DLKKHGNTNLTALGGILKKKGHHEAELTPLAQSHATKHKIPVKYLEFISEAIIQVLQSK 118
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 374 GDETFVTIDLSQRADSKIEIYQKMWRYMESKRPSVF 409
GD+ ID++++ADSK+ ++ + +M RP V
Sbjct: 188 GDKVIDVIDVARQADSKMTLHNYVKYFMNPNRPKVL 223
>pdb|2VHA|A Chain A, Debp
pdb|2VHA|B Chain B, Debp
Length = 287
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 426 AFLMESTMLDYE---VQRNCNLTQIGGLLDSKGYGIATPKGSP-WRDRISLAILELQEKG 481
AF+M+ +L E ++ N +G + YG K P ++ + I ++Q G
Sbjct: 178 AFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSG 237
Query: 482 TIQMLYDKWWKN 493
+ +DKW+KN
Sbjct: 238 EAEKWFDKWFKN 249
>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIF|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
Length = 1155
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 392 EIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIGGLL 451
++ K RY+E K P ++ +G K V GDYA+ E+T+ Y + LT G L
Sbjct: 881 DVKNKDERYIE-KEPLPINKEFPKGSKVVFLGDYAYGGEATVDGYNSETRLKLTVKKGSL 939
Query: 452 DSK 454
++
Sbjct: 940 RAE 942
>pdb|3KV9|A Chain A, Structure Of Kiaa1718 Jumonji Domain
pdb|3KVA|A Chain A, Structure Of Kiaa1718 Jumonji Domain In Complex With
Alpha- Ketoglutarate
pdb|3KVB|A Chain A, Structure Of Kiaa1718 Jumonji Domain In Complex With N-
Oxalylglycine
pdb|3U78|A Chain A, E67-2 Selectively Inhibits Kiaa1718, A Human Histone H3
Lysine 9 Jumonji Demethylase
Length = 397
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 374 GDETFVTIDLSQRADSKIEIYQKMWRYMESKRPSVF 409
GD+ ID++++ADSK+ ++ + +M RP V
Sbjct: 97 GDKVIDVIDVARQADSKMTLHNYVKYFMNPNRPKVL 132
>pdb|3QKG|A Chain A, Crystal Structure Of Alpha-1-Microglobulin At 2.3 A
Resolution
Length = 193
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 14/69 (20%)
Query: 437 EVQRNCNLTQIGGLLDSKGYGIATPKGSPW----RDRISLAILELQEKGT---IQMLYDK 489
+VQ N N+++I G K Y +A SPW DR++++ L L E T I M +
Sbjct: 11 QVQENFNISRIYG----KWYNLAIGSTSPWLKKIMDRMTVSTLVLGEGATEAEISMTSTR 66
Query: 490 WWKNTGDVC 498
W K VC
Sbjct: 67 WRKG---VC 72
>pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 381 IDLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKR 419
ID+ + D KI IY+ M +ES+ SV V+D E K+
Sbjct: 335 IDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQ 373
>pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 381 IDLSQRADSKIEIYQKMWRYMESKRPSVFVSDYE 414
ID+ + D KI IY+ M +ES+ SV V+D E
Sbjct: 335 IDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLE 368
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,617,963
Number of Sequences: 62578
Number of extensions: 585809
Number of successful extensions: 1567
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1161
Number of HSP's gapped (non-prelim): 257
length of query: 504
length of database: 14,973,337
effective HSP length: 103
effective length of query: 401
effective length of database: 8,527,803
effective search space: 3419649003
effective search space used: 3419649003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)