Query psy1412
Match_columns 504
No_of_seqs 286 out of 1959
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 20:02:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1412.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1412hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 3.1E-66 1.1E-70 580.4 31.2 474 9-501 233-767 (823)
2 1yae_A Glutamate receptor, ion 100.0 3.5E-35 1.2E-39 291.4 20.1 285 129-502 6-295 (312)
3 3g3k_A Glutamate receptor, ion 100.0 8.7E-34 3E-38 273.0 17.4 253 134-500 2-259 (259)
4 1pb7_A N-methyl-D-aspartate re 100.0 2.5E-33 8.5E-38 275.6 16.1 245 136-500 4-292 (292)
5 2rc8_A Glutamate [NMDA] recept 100.0 9.3E-32 3.2E-36 264.6 19.2 243 134-500 3-294 (294)
6 2a5s_A N-methyl-D-aspartate re 100.0 1.3E-30 4.4E-35 255.1 17.0 248 134-500 3-284 (284)
7 1mqi_A Glutamate receptor 2; G 100.0 7.2E-30 2.4E-34 246.1 21.4 253 135-500 3-263 (263)
8 2v3u_A Glutamate receptor delt 100.0 4.1E-29 1.4E-33 240.6 19.1 251 134-499 1-264 (265)
9 4gvo_A LMO2349 protein; struct 99.9 7.1E-24 2.4E-28 202.1 13.6 223 133-493 6-236 (243)
10 4h5g_A Amino acid ABC superfam 99.9 1.5E-23 5.2E-28 199.7 13.0 223 134-493 10-238 (243)
11 3i6v_A Periplasmic His/Glu/Gln 99.9 5.3E-23 1.8E-27 194.4 13.8 207 135-494 4-219 (232)
12 3kzg_A Arginine 3RD transport 99.9 1.4E-22 4.7E-27 191.7 14.2 222 135-499 2-236 (237)
13 3k4u_A Binding component of AB 99.9 4.2E-22 1.4E-26 189.4 17.4 223 134-494 3-230 (245)
14 3del_B Arginine binding protei 99.9 1.1E-21 3.6E-26 186.0 14.7 222 133-500 8-238 (242)
15 1ii5_A SLR1257 protein; membra 99.9 2.1E-21 7.1E-26 182.4 14.2 219 134-493 2-227 (233)
16 4f3p_A Glutamine-binding perip 99.9 2.7E-21 9.2E-26 184.3 15.1 220 133-494 21-244 (249)
17 3kbr_A Cyclohexadienyl dehydra 99.9 4.7E-21 1.6E-25 181.1 15.8 222 133-492 12-237 (239)
18 3hv1_A Polar amino acid ABC up 99.9 3E-21 1E-25 186.1 14.0 221 133-493 18-249 (268)
19 4eq9_A ABC transporter substra 99.8 8.3E-21 2.8E-25 179.9 15.1 219 134-493 6-236 (246)
20 2pyy_A Ionotropic glutamate re 99.8 4.3E-21 1.5E-25 179.4 10.9 218 136-493 3-223 (228)
21 3tql_A Arginine-binding protei 99.8 2.5E-20 8.4E-25 174.1 14.7 216 136-491 2-227 (227)
22 3h7m_A Sensor protein; histidi 99.8 2.3E-20 7.7E-25 175.4 12.9 215 133-493 8-231 (234)
23 2y7i_A STM4351; arginine-bindi 99.8 8.6E-20 2.9E-24 171.0 15.9 217 133-492 3-228 (229)
24 3mpk_A Virulence sensor protei 99.8 6.5E-20 2.2E-24 177.0 14.8 216 132-493 28-253 (267)
25 1lst_A Lysine, arginine, ornit 99.8 8.6E-20 2.9E-24 172.2 14.9 219 135-493 3-233 (239)
26 4dz1_A DALS D-alanine transpor 99.8 4.2E-20 1.4E-24 177.4 13.0 219 134-493 27-254 (259)
27 1wdn_A GLNBP, glutamine bindin 99.8 1.2E-19 4E-24 169.4 15.3 217 135-493 2-223 (226)
28 2iee_A ORF2, probable ABC tran 99.8 9.2E-20 3.1E-24 176.3 12.1 220 133-492 18-246 (271)
29 3qax_A Probable ABC transporte 99.8 4.9E-19 1.7E-23 169.9 14.8 215 134-493 29-254 (268)
30 2q88_A EHUB, putative ABC tran 99.8 1.6E-19 5.3E-24 172.7 11.2 219 134-492 11-240 (257)
31 2vha_A Periplasmic binding tra 99.8 1.4E-18 4.8E-23 169.1 18.1 223 134-494 15-250 (287)
32 2yln_A Putative ABC transporte 99.8 1.2E-18 4E-23 169.8 13.5 216 134-493 55-278 (283)
33 4i62_A Amino acid ABC transpor 99.8 1.8E-18 6.1E-23 166.0 13.8 223 134-493 37-265 (269)
34 2pvu_A ARTJ; basic amino acid 99.8 4.8E-18 1.6E-22 164.1 16.6 220 132-493 38-263 (272)
35 1xt8_A Putative amino-acid tra 99.8 2.1E-18 7.2E-23 168.6 13.2 217 135-493 43-266 (292)
36 2yjp_A Putative ABC transporte 99.8 1.5E-18 5.3E-23 169.6 11.5 217 135-493 54-277 (291)
37 2v25_A Major cell-binding fact 99.7 2.5E-16 8.7E-21 149.9 13.3 214 134-491 36-258 (259)
38 4gpa_A Glutamate receptor 4; P 99.0 1.2E-09 4.2E-14 110.2 9.7 111 8-124 237-379 (389)
39 3o21_A Glutamate receptor 3; p 98.8 1.2E-08 4E-13 103.6 9.2 109 9-123 239-380 (389)
40 3hsy_A Glutamate receptor 2; l 98.8 1.3E-08 4.6E-13 102.6 9.1 109 9-123 233-374 (376)
41 3om0_A Glutamate receptor, ion 98.8 1.3E-08 4.5E-13 103.2 8.9 114 9-124 245-382 (393)
42 3n5l_A Binding protein compone 98.6 1.1E-07 3.8E-12 93.3 10.7 82 409-490 153-241 (310)
43 3p7i_A PHND, subunit of alkylp 98.6 1.9E-07 6.4E-12 92.1 11.3 82 409-490 162-250 (321)
44 3qel_B Glutamate [NMDA] recept 98.6 8.2E-08 2.8E-12 96.5 7.7 76 48-124 259-358 (364)
45 3h6g_A Glutamate receptor, ion 98.5 1.3E-07 4.6E-12 95.7 8.0 107 9-124 245-384 (395)
46 3saj_A Glutamate receptor 1; r 98.5 2.9E-07 9.9E-12 93.0 8.4 109 9-123 236-377 (384)
47 2ozz_A Hypothetical protein YH 98.4 2.4E-07 8.4E-12 85.8 6.7 75 161-250 28-108 (231)
48 3qek_A NMDA glutamate receptor 98.0 1.8E-05 6.3E-10 79.6 9.1 74 48-122 277-374 (384)
49 3uif_A Sulfonate ABC transport 96.6 0.0077 2.6E-07 59.3 10.2 68 170-247 35-106 (348)
50 2f5x_A BUGD; periplasmic bindi 96.6 0.02 6.9E-07 55.6 12.9 82 408-490 169-275 (312)
51 2dvz_A BUGE, putative exported 96.6 0.016 5.4E-07 56.4 12.0 82 408-490 173-279 (314)
52 2x26_A Periplasmic aliphatic s 96.2 0.043 1.5E-06 52.6 12.5 81 411-492 139-232 (308)
53 4f11_A Gamma-aminobutyric acid 96.2 0.0032 1.1E-07 64.0 4.4 70 48-117 313-404 (433)
54 2qpq_A Protein BUG27; alpha/be 96.2 0.033 1.1E-06 53.7 11.4 82 408-490 160-266 (301)
55 4ab5_A Transcriptional regulat 95.7 0.13 4.5E-06 45.8 12.7 68 165-249 21-89 (222)
56 3qsl_A Putative exported prote 95.7 0.1 3.5E-06 50.6 12.7 63 174-248 58-124 (346)
57 3ho7_A OXYR; beta-alpha-barrel 95.2 0.13 4.3E-06 46.4 10.8 68 165-249 24-92 (232)
58 3un6_A Hypothetical protein sa 95.2 0.056 1.9E-06 52.9 8.8 81 412-492 190-283 (341)
59 3jv9_A OXYR, transcriptional r 95.1 0.31 1.1E-05 43.1 13.1 68 165-249 17-85 (219)
60 3oxn_A Putative transcriptiona 94.3 0.18 6.2E-06 45.8 9.6 84 133-249 16-100 (241)
61 1jdp_A NPR-C, atrial natriuret 94.3 0.047 1.6E-06 55.4 6.0 60 48-119 314-397 (441)
62 3ksx_A Nitrate transport prote 93.6 0.8 2.8E-05 44.0 13.2 52 412-463 166-219 (324)
63 1dp4_A Atrial natriuretic pept 93.0 0.1 3.6E-06 52.6 5.8 59 48-118 317-398 (435)
64 3ks9_A Mglur1, metabotropic gl 93.0 0.096 3.3E-06 54.2 5.6 71 50-123 384-481 (496)
65 1i6a_A OXYR, hydrogen peroxide 92.8 0.92 3.2E-05 40.3 11.4 69 165-250 18-87 (219)
66 3mq4_A Mglur7, metabotropic gl 92.8 0.067 2.3E-06 55.2 4.0 65 49-115 376-467 (481)
67 3i45_A Twin-arginine transloca 92.1 0.1 3.5E-06 51.7 4.2 38 27-67 267-304 (387)
68 4ddd_A Immunogenic protein; ss 91.9 1.1 3.8E-05 43.3 11.4 51 161-223 43-97 (327)
69 3fzv_A Probable transcriptiona 91.4 0.99 3.4E-05 42.4 10.3 83 134-249 93-177 (306)
70 3hhf_B Transcriptional regulat 90.5 2 6.9E-05 37.4 10.8 68 408-477 132-203 (213)
71 2esn_A Probable transcriptiona 89.8 1.5 5.1E-05 41.3 10.0 68 165-249 114-185 (310)
72 2fyi_A HTH-type transcriptiona 89.4 4.8 0.00016 35.7 12.7 69 165-249 27-96 (228)
73 3ix1_A N-formyl-4-amino-5-amin 89.2 0.46 1.6E-05 45.2 5.7 78 161-250 15-96 (302)
74 3td9_A Branched chain amino ac 89.0 0.4 1.4E-05 46.9 5.3 20 48-67 289-308 (366)
75 2k1e_A Water soluble analogue 88.8 0.3 1E-05 38.7 3.4 54 274-345 18-72 (103)
76 2y7p_A LYSR-type regulatory pr 88.1 1.5 5.2E-05 39.0 8.2 69 165-250 21-90 (218)
77 3fxq_A LYSR type regulator of 88.1 5.9 0.0002 37.1 12.9 70 165-249 105-175 (305)
78 2nr1_A NR1 M2, M2; receptor, s 88.0 0.094 3.2E-06 29.8 -0.1 21 307-327 4-24 (27)
79 2ih3_C Voltage-gated potassium 87.5 0.81 2.8E-05 37.4 5.4 35 308-345 58-93 (122)
80 2hxr_A HTH-type transcriptiona 87.3 14 0.00048 32.6 14.4 68 165-249 43-111 (238)
81 2ql3_A Probable transcriptiona 86.8 14 0.00047 31.8 13.8 68 165-249 18-86 (209)
82 2a9h_A Voltage-gated potassium 85.1 1.2 4.2E-05 38.0 5.5 33 310-345 83-116 (155)
83 3r26_A Molybdate-binding perip 84.4 9.8 0.00033 34.5 11.8 72 166-250 20-97 (237)
84 3eff_K Voltage-gated potassium 83.5 1.4 4.9E-05 36.7 5.1 35 308-345 37-72 (139)
85 2e4u_A Metabotropic glutamate 83.3 0.92 3.2E-05 47.4 4.7 20 48-67 365-384 (555)
86 1al3_A Cys regulon transcripti 83.2 6.2 0.00021 37.4 10.4 80 409-492 223-305 (324)
87 4evq_A Putative ABC transporte 81.4 2 6.7E-05 41.9 6.1 36 48-98 289-324 (375)
88 1uth_A LYSR-type regulatory pr 81.2 4.1 0.00014 38.5 8.1 68 165-249 118-186 (315)
89 3sm9_A Mglur3, metabotropic gl 80.6 1.2 4E-05 45.7 4.2 21 48-68 364-384 (479)
90 2h9b_A HTH-type transcriptiona 80.3 29 0.00099 32.3 13.9 68 165-249 103-171 (312)
91 1ixc_A CBNR, LYSR-type regulat 78.2 11 0.00039 34.6 10.1 83 134-249 89-172 (294)
92 3ipc_A ABC transporter, substr 77.9 2.5 8.7E-05 40.7 5.5 37 27-67 258-294 (356)
93 2h98_A HTH-type transcriptiona 77.8 45 0.0016 31.1 15.5 68 165-249 103-171 (313)
94 4h33_A LMO2059 protein; bilaye 74.7 3.7 0.00013 34.1 4.9 33 310-345 42-75 (137)
95 3gzg_A Molybdate-binding perip 73.7 28 0.00097 31.8 11.3 71 167-250 37-113 (253)
96 3ldc_A Calcium-gated potassium 69.6 6.8 0.00023 29.2 4.9 32 311-345 28-60 (82)
97 3ouf_A Potassium channel prote 68.1 7.4 0.00025 30.1 4.9 33 310-345 31-64 (97)
98 3vou_A ION transport 2 domain 67.9 6.5 0.00022 33.0 5.0 33 310-345 51-84 (148)
99 2q67_A Potassium channel prote 67.4 7.3 0.00025 31.1 4.9 33 310-345 48-81 (114)
100 1atg_A MODA, periplasmic molyb 66.5 4.9 0.00017 35.5 4.2 73 166-251 13-91 (231)
101 3hhg_A Transcriptional regulat 64.7 25 0.00087 32.3 9.1 69 408-478 218-290 (306)
102 4edp_A ABC transporter, substr 64.3 85 0.0029 29.3 13.0 78 410-487 216-296 (351)
103 1twy_A ABC transporter, peripl 64.2 9.2 0.00031 35.1 5.8 71 166-250 41-113 (290)
104 3lr1_A Tungstate ABC transport 63.2 6.9 0.00023 35.8 4.5 75 164-251 18-95 (236)
105 2zzv_A ABC transporter, solute 61.1 8.2 0.00028 37.7 5.0 64 168-238 53-118 (361)
106 3hut_A Putative branched-chain 60.8 6.5 0.00022 37.8 4.1 34 48-98 278-312 (358)
107 3muq_A Uncharacterized conserv 59.7 8.7 0.0003 35.2 4.5 75 164-251 18-95 (237)
108 4eyg_A Twin-arginine transloca 59.7 8.2 0.00028 37.1 4.7 36 48-99 281-316 (368)
109 3n0x_A Possible substrate bind 59.6 7.9 0.00027 37.6 4.5 34 48-98 284-317 (374)
110 3snr_A Extracellular ligand-bi 59.5 6 0.0002 37.9 3.6 41 48-98 283-323 (362)
111 3h5l_A Putative branched-chain 58.7 8.8 0.0003 37.9 4.8 42 48-99 304-345 (419)
112 1usg_A Leucine-specific bindin 57.7 11 0.00036 35.9 5.1 33 48-97 276-308 (346)
113 1orq_C Potassium channel; volt 57.1 11 0.00039 33.7 4.9 34 309-345 163-197 (223)
114 1pea_A Amidase operon; gene re 56.0 13 0.00044 36.2 5.4 55 27-99 265-319 (385)
115 4ecf_A ABC-type phosphate tran 52.5 19 0.00066 33.2 5.7 72 165-250 16-91 (264)
116 3lkb_A Probable branched-chain 51.0 9.8 0.00033 37.1 3.6 72 48-122 286-380 (392)
117 3cvg_A Putative metal binding 50.2 11 0.00037 35.5 3.6 74 165-251 33-116 (294)
118 3onm_A Transcriptional regulat 50.0 29 0.00098 30.6 6.4 68 165-251 40-108 (238)
119 2pfy_A Putative exported prote 48.5 15 0.00053 34.6 4.4 52 169-227 22-73 (301)
120 3sg0_A Extracellular ligand-bi 48.0 12 0.00042 36.1 3.7 41 48-98 307-347 (386)
121 3isp_A HTH-type transcriptiona 47.8 90 0.0031 28.5 9.8 66 408-477 219-285 (303)
122 1zbm_A Hypothetical protein AF 46.5 11 0.00038 34.8 3.1 49 201-249 46-97 (280)
123 3i09_A Periplasmic branched-ch 45.6 12 0.0004 36.3 3.1 36 48-100 279-314 (375)
124 4exl_A PBP 1, phosphate-bindin 45.3 30 0.001 31.9 5.8 71 166-250 17-91 (265)
125 2pfz_A Putative exported prote 44.9 16 0.00056 34.4 4.0 52 169-227 21-72 (301)
126 3n0w_A ABC branched chain amin 44.8 12 0.00041 36.2 3.1 35 48-99 282-316 (379)
127 1p7b_A Integral membrane chann 43.0 28 0.00096 33.5 5.3 33 310-345 95-128 (333)
128 3fd3_A Chromosome replication 42.7 1.5E+02 0.005 24.7 11.8 67 165-248 15-81 (208)
129 1ixh_A Phosphate-binding prote 41.0 21 0.00073 33.9 4.2 72 166-250 15-87 (321)
130 3beh_A MLL3241 protein; transm 40.9 22 0.00074 34.4 4.2 32 311-345 161-193 (355)
131 3eaf_A ABC transporter, substr 39.3 26 0.0009 33.9 4.6 19 48-66 289-307 (391)
132 1us5_A Putative GLUR0 ligand b 38.0 43 0.0015 31.1 5.8 70 169-250 38-121 (314)
133 3lop_A Substrate binding perip 37.6 14 0.00049 35.4 2.3 55 27-98 265-319 (364)
134 2qks_A KIR3.1-prokaryotic KIR 36.5 40 0.0014 32.2 5.2 33 310-345 77-110 (321)
135 1xl4_A Inward rectifier potass 35.0 34 0.0012 32.4 4.4 34 309-345 80-114 (301)
136 2hzl_A Trap-T family sorbitol/ 34.4 26 0.00089 34.0 3.6 53 169-228 53-105 (365)
137 3kn3_A Putative periplasmic pr 33.3 22 0.00075 32.6 2.7 74 164-250 18-94 (242)
138 2x7q_A Ca3427, possible thiami 32.8 33 0.0011 32.3 4.0 66 174-250 38-109 (321)
139 4gd5_A Phosphate ABC transport 31.6 54 0.0018 30.2 5.2 49 203-251 75-123 (279)
140 2r9r_B Paddle chimera voltage 31.1 53 0.0018 33.6 5.4 33 310-345 374-407 (514)
141 4f06_A Extracellular ligand-bi 29.8 22 0.00074 34.4 2.1 57 27-100 264-320 (371)
142 1pc3_A Phosphate-binding prote 26.6 45 0.0016 32.1 3.8 49 201-250 63-114 (350)
143 4gx0_A TRKA domain protein; me 25.8 66 0.0023 33.2 5.1 33 310-345 50-83 (565)
144 4gnr_A ABC transporter substra 24.7 23 0.00077 33.8 1.2 18 48-65 282-299 (353)
145 3l6g_A Betaine ABC transporter 24.5 1.4E+02 0.0049 27.0 6.7 72 166-250 16-94 (256)
146 3k6v_A Solute-binding protein 24.3 4.7E+02 0.016 24.9 13.2 70 169-251 59-134 (354)
147 3cfz_A UPF0100 protein MJ1186; 24.0 71 0.0024 29.5 4.6 73 165-250 17-95 (292)
148 3cij_A UPF0100 protein AF_0094 23.1 70 0.0024 29.6 4.3 72 166-250 18-95 (295)
149 4h1x_A PBP 2, phosphate-bindin 23.0 89 0.003 28.8 4.9 50 199-251 191-241 (265)
150 2xwv_A Sialic acid-binding per 22.3 59 0.002 30.7 3.6 46 169-221 23-68 (312)
151 2rin_A Putative glycine betain 22.2 1.8E+02 0.0062 27.0 7.0 68 169-249 24-99 (298)
152 3pjs_K KCSA, voltage-gated pot 21.8 28 0.00097 29.6 1.1 35 308-345 64-99 (166)
153 1ryo_A Serotransferrin; iron t 21.4 1E+02 0.0034 29.5 5.0 42 166-219 18-62 (327)
154 3tmg_A Glycine betaine, L-prol 21.3 1.6E+02 0.0056 27.1 6.4 69 168-249 32-107 (280)
155 3cfx_A UPF0100 protein MA_0280 20.6 97 0.0033 28.6 4.7 72 166-250 18-95 (296)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=3.1e-66 Score=580.43 Aligned_cols=474 Identities=39% Similarity=0.702 Sum_probs=396.1
Q ss_pred EEEEeeecCCCccccchhhhhhhcccccCCCc-----cc-cccccccchhhhHHHHHHHHHHHhhhcC-Cc--ccccCCC
Q psy1412 9 AAGLALLDKSSVIKTSNLSCDLEVPWRDGLSL-----YN-YINTAEPALMYDSVHVLAAGLALLDKSS-VI--KTSNLSC 79 (504)
Q Consensus 9 ~tg~r~~d~~~~~~~~~~~~~~~~~W~~g~~~-----~~-~i~~~~~~~~yDav~~~a~a~~~~~~~~-~~--~~~~~~c 79 (504)
+++++..+++.+. .+++.++|...... .. .+.. +++++||||+++|+|++++...+ .+ ...+.+|
T Consensus 233 ~~~~~~~~~~~~~-----~~~f~~~~~~~~~~~~~~~~~~~~~~-~a~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~c 306 (823)
T 3kg2_A 233 VSGFQIVDYDDSL-----VSKFIERWSTLEEKEYPGAHTATIKY-TSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDC 306 (823)
T ss_dssp EEEEESSCTTSHH-----HHHHHHHHTTSCTTTSTTCCSSCCCH-HHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCCCT
T ss_pred ceEeeeecCCchH-----HHHHHHHHHhhcccccCCCCccccch-hhHHHHHHHHHHHHHHHHHHhhccccccCCCCCCc
Confidence 5788887776655 78888888652111 00 2333 68999999999999999986422 11 2345688
Q ss_pred CCC--CcccCchhHHHHhhh----------------------ceEEEeeccceeeeeEecCCCCceeecCCCccccccCC
Q psy1412 80 DLE--VPWRDGLSLYNYINT----------------------LDLLKLKREELRKVGHWTPAEGINITDRSAFYETSTNN 135 (504)
Q Consensus 80 ~~~--~~~~~G~~l~~~l~~----------------------~~i~~~~~~~~~~vg~W~~~~gl~~~~~~~~~~~~~~~ 135 (504)
... .+|.+|..+.++|++ |+|+|+.++++++||.|++..|+.... +...++++
T Consensus 307 ~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g~~~~~---~~~~~~~~ 383 (823)
T 3kg2_A 307 LANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVLTE---DDTSGLEQ 383 (823)
T ss_dssp TCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETTTEEEECC---CCCSSCCC
T ss_pred cCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCeeEEEEcCCCCceecc---CcccccCC
Confidence 654 679999999999997 899999999999999999998888554 34557789
Q ss_pred eEEEEEeecccCeEEEecC-CCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccc
Q psy1412 136 VTLIVMTREEKPYVMVKND-ANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKA 214 (504)
Q Consensus 136 ~~l~V~~~~~~P~~~~~~~-~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~ 214 (504)
++|+|++...+||++.+++ +...++++++|||+||++++++++||+++++.+++++||..++.+|+|+|++++|.+|++
T Consensus 384 ~~l~v~~~~~~P~~~~~~~~~~~~~~~~~~G~~~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~ 463 (823)
T 3kg2_A 384 KTVVVTTILESPYVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 463 (823)
T ss_dssp CCEEEEECCCTTTSEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSC
T ss_pred CEEEEEEecCCCcEEEecCccccCCCCceEEEHHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhccccC
Confidence 9999999999999998654 334567899999999999999999999999999999999998889999999999999999
Q ss_pred cceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q psy1412 215 DLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYEWS 294 (504)
Q Consensus 215 D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~~~~ 294 (504)
|++++++++|++|.+.+|||.||+..+++++++++.+...+++.|++||++.+|++++++++++++++|+++|++|++|+
T Consensus 464 D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~ 543 (823)
T 3kg2_A 464 DIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWH 543 (823)
T ss_dssp SEECSCCBCCHHHHTTEEECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC--------
T ss_pred cEEecceecchhheeeEEeccchhhCCEEEEEECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhcc
Confidence 99999999999999999999999999999999999877788999999999999999999999999999999999999999
Q ss_pred CCCCCCCC---CCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehcc--------------ch---hhhhhhh
Q psy1412 295 NPHPCLAE---SPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDT--------------AL---DSKIEIY 354 (504)
Q Consensus 295 ~~~~~~~~---~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~--------------An---~Ltv~~~ 354 (504)
+++.|... .....+++++.+++|++++++++||.+..|++. ++|++++ || +||++
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~p~~~---~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~-- 618 (823)
T 3kg2_A 544 TEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSL---SGRIVGGVWWFFTLIIISSYTANLAAFLTVE-- 618 (823)
T ss_dssp ---------------CHHHHHHHHHHHTTTTSCC------CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CcccccccccccccccccccHHHHHHHHHHHHHhcCCCcCCcch---hhhhHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 88765532 223456788999999999999999999999999 9999987 33 89999
Q ss_pred hhhhhhcccchhhhhccCCCCceeeee----ecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhh--cCCeEEE
Q psy1412 355 QKMWRYMESKKCILFLGGQGDETFVTI----DLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVL--EGDYAFL 428 (504)
Q Consensus 355 ~~~~~~~~~i~s~~dL~~~~~i~~g~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~--~g~~A~i 428 (504)
++.++|++++||.+++.+.+|++ ...+|++++...|++|+++|+..++.+++.+.+|++++++ +|.|||+
T Consensus 619 ----~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 694 (823)
T 3kg2_A 619 ----RMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYL 694 (823)
T ss_dssp ----HHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHCCCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTTSEEEE
T ss_pred ----ccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhccchHHHHHHHHHHhcCCccccCCHHHHHHHHhccCCceEEE
Confidence 99999999999999888899876 5678899999999999999999888889999999999995 5669999
Q ss_pred eecchhhhhhhcC-CccEEcCCccCCcceEEEecCCCCCchHHHHHHHhhhccChhHHHHHhhccCCCCCCCCC
Q psy1412 429 MESTMLDYEVQRN-CNLTQIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGDVCNRD 501 (504)
Q Consensus 429 ~e~~~~~y~~~~~-c~l~~vg~~~~~~~~g~a~~k~Spl~~~in~ail~l~e~G~l~~l~~kw~~~~~~~C~~~ 501 (504)
.|.+.++|+.+++ |+++.+++.+...+|||++||||||++.||++|++|+|+|++++|+++||.++ ++|...
T Consensus 695 ~~~~~~~y~~~~~~c~l~~v~~~~~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~~~~~w~~~~-~~c~~~ 767 (823)
T 3kg2_A 695 LESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDK-GECGAK 767 (823)
T ss_dssp EEHHHHHHHHTSTTCCEEEESCCSSCEEECCEEETTCSSHHHHHHHHHHHHHTTHHHHHHHHHHTTS-CSCSST
T ss_pred echHHHHHHHhcCCCceEEccccccccceeEeecCCChHHHHHHHHHHHHHhCCcHHHHHHhhCcCC-CCCCCC
Confidence 9999999998877 99999999999999999999999999999999999999999999999999875 889764
No 2
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=100.00 E-value=3.5e-35 Score=291.43 Aligned_cols=285 Identities=49% Similarity=0.876 Sum_probs=219.3
Q ss_pred cccccCCeEEEEEeecccCeEEEecC-CCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHH
Q psy1412 129 YETSTNNVTLIVMTREEKPYVMVKND-ANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVK 207 (504)
Q Consensus 129 ~~~~~~~~~l~V~~~~~~P~~~~~~~-~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~ 207 (504)
.....++++|+|++...+||.+.... ....+++++.||++||++++++++|++++++.+++++||..+..+++|++++.
T Consensus 6 l~~i~~~~~l~V~~~~~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 85 (312)
T 1yae_A 6 ITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVR 85 (312)
T ss_dssp CTTTTCSCEEEEEECCBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHH
T ss_pred hhhhhcCceEEEEEeccCCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHH
Confidence 34556788999999988999887521 11113478999999999999999999999999999999998866689999999
Q ss_pred HHhhccccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHh
Q psy1412 208 ELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMAR 287 (504)
Q Consensus 208 ~l~~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r 287 (504)
+|.+|++|++++++++|++|.+.++||.||+..+.+++++++.....++|.|+.||+
T Consensus 86 ~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~----------------------- 142 (312)
T 1yae_A 86 ELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGS----------------------- 142 (312)
T ss_dssp HHHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC---------------------------------------
T ss_pred HHhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccc-----------------------
Confidence 999999999999999999999999999999999999999988766678999999998
Q ss_pred hCCCCccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhh
Q psy1412 288 FSPYEWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCI 367 (504)
Q Consensus 288 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~ 367 (504)
.+| + |++ ++..+|+++
T Consensus 143 ~~p------------------------------------------~----------------tv~------~~~~~i~~~ 158 (312)
T 1yae_A 143 LVP------------------------------------------R----------------GSE------RMESPIDSA 158 (312)
T ss_dssp ----------------------------------------------------------------------------CCSH
T ss_pred cCC------------------------------------------c----------------ccc------cccCCCCCH
Confidence 011 0 112 556778999
Q ss_pred hhccCCCCceeeee----ecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCCeEEEeecchhhhhhhcCCc
Q psy1412 368 LFLGGQGDETFVTI----DLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCN 443 (504)
Q Consensus 368 ~dL~~~~~i~~g~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~~A~i~e~~~~~y~~~~~c~ 443 (504)
+||.++..+++|++ ...+|.+...+.|..++..+......+.+.+.++++++|.+|++|++.+...+.|+++++|+
T Consensus 159 ~dL~g~~~~~vg~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~Da~i~~~~~~~~~~~~~~~ 238 (312)
T 1yae_A 159 DDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCN 238 (312)
T ss_dssp HHHHTCSSSEEECBTTSHHHHHHHHCCBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSSEEEEEEHHHHHHHHTTCTT
T ss_pred HHHhhccCceEEEEeCChHHHHHHhccCchHHHHHHHHHhcCCCcccCCHHHHHHHHHcCCcEEEeccHHHHHHHhcCCC
Confidence 99998765666654 34566666677788887766542234557899999999998889999999999999888899
Q ss_pred cEEcCCccCCcceEEEecCCCCCchHHHHHHHhhhccChhHHHHHhhccCCCCCCCCCC
Q psy1412 444 LTQIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGDVCNRDE 502 (504)
Q Consensus 444 l~~vg~~~~~~~~g~a~~k~Spl~~~in~ail~l~e~G~l~~l~~kw~~~~~~~C~~~~ 502 (504)
+.+++..+...+++|+++|++||++.||++|.+|+++|.+++|.+||+.. ..|+.++
T Consensus 239 l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~--~~c~~~~ 295 (312)
T 1yae_A 239 LTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRG--NGCPEEE 295 (312)
T ss_dssp EEEESSCSSCEEEEEEEETTCSSHHHHHHHHHHHHHHTHHHHHHHHHHCC--SCC----
T ss_pred EEEecccccccceEEEEeCCCCcHHHHHHHHHHHHHcCCHHHHHhhhcCC--CCCCCCC
Confidence 99999888899999999999999999999999999999999999999984 6898654
No 3
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=100.00 E-value=8.7e-34 Score=272.98 Aligned_cols=253 Identities=52% Similarity=0.938 Sum_probs=219.4
Q ss_pred CCeEEEEEeecccCeEEEecC-CCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhc
Q psy1412 134 NNVTLIVMTREEKPYVMVKND-ANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDK 212 (504)
Q Consensus 134 ~~~~l~V~~~~~~P~~~~~~~-~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g 212 (504)
++++|+|++...+||.+.... +...++++++||++||++++++++|++++++.+++++||..+..+++|++++..|.+|
T Consensus 2 ~~~~l~v~~~~~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~~g 81 (259)
T 3g3k_A 2 SNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDH 81 (259)
T ss_dssp -CCCEEEEECCBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTT
T ss_pred CCcEEEEEEecCCCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHHhcC
Confidence 357899999999999987653 2233468999999999999999999999999999999999886678999999999999
Q ss_pred cccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy1412 213 KADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYE 292 (504)
Q Consensus 213 ~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~~ 292 (504)
++|++++++++|++|.+.++||.||+..+.+++++++.
T Consensus 82 ~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~------------------------------------------ 119 (259)
T 3g3k_A 82 KADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGT------------------------------------------ 119 (259)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSS------------------------------------------
T ss_pred cccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCc------------------------------------------
Confidence 99999999999999999999999999999999997542
Q ss_pred ccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhccC
Q psy1412 293 WSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLGG 372 (504)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~~ 372 (504)
+|++++||..
T Consensus 120 ----------------------------------------------------------------------~i~~~~dL~g 129 (259)
T 3g3k_A 120 ----------------------------------------------------------------------PIDSADDLAK 129 (259)
T ss_dssp ----------------------------------------------------------------------SCCSHHHHHT
T ss_pred ----------------------------------------------------------------------cccCHHHhcc
Confidence 2467888887
Q ss_pred CCCceeeee----ecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCCeEEEeecchhhhhhhcCCccEEcC
Q psy1412 373 QGDETFVTI----DLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448 (504)
Q Consensus 373 ~~~i~~g~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~~A~i~e~~~~~y~~~~~c~l~~vg 448 (504)
+..+.+|++ ...++.+.....|..++..+....+.+.+.+.++++++|.+|++|++.+...+.|+.++.|++..++
T Consensus 130 ~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~da~i~~~~~~~~~~~~~~~l~~~~ 209 (259)
T 3g3k_A 130 QTKIEYGAVEDGATMTFFKRSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTQIG 209 (259)
T ss_dssp CSSSEEEEETTSHHHHHHHHCCSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHHSSEEEEEEHHHHHHHHHHCTTEEEES
T ss_pred CCCceEEEecCcHHHHHHhhccchhHHHHHHHHHhcCCCcccCCHHHHHHHHHhCCeEEEechHHHHHHhcCCceEEEec
Confidence 666667765 4566777778889988888876555567889999999999999999999999999998899999999
Q ss_pred CccCCcceEEEecCCCCCchHHHHHHHhhhccChhHHHHHhhccCCCCCCCC
Q psy1412 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGDVCNR 500 (504)
Q Consensus 449 ~~~~~~~~g~a~~k~Spl~~~in~ail~l~e~G~l~~l~~kw~~~~~~~C~~ 500 (504)
..+...+++|+++|++||++.||++|.+|+++|.+++|.+||+. ..+|++
T Consensus 210 ~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~--~~~c~~ 259 (259)
T 3g3k_A 210 GLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWR--GNGCPE 259 (259)
T ss_dssp SCSSCEEECCEEETTCTHHHHHHHHHHHHHHTC-CHHHHHHHHC--C--CC-
T ss_pred ccceeeeEEEEECCCCccHHHHHHHHHHHHhcChHHHHHHhhcC--CCCCCC
Confidence 99999999999999999999999999999999999999999998 367974
No 4
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=100.00 E-value=2.5e-33 Score=275.58 Aligned_cols=245 Identities=31% Similarity=0.535 Sum_probs=193.5
Q ss_pred eEEEEEeecccCeEEEecCCC---CC-----------------------------CCccceehhHHHHHHHHHHcCceEE
Q psy1412 136 VTLIVMTREEKPYVMVKNDAN---LT-----------------------------GNAMFEGFCIDLLKSIAAQVGFHFV 183 (504)
Q Consensus 136 ~~l~V~~~~~~P~~~~~~~~~---~~-----------------------------~~~~~~G~~idll~~la~~l~f~~~ 183 (504)
++|+|+|..++||++.+.... +. .+++++|||+||++++++++|++++
T Consensus 4 ~~l~v~t~~~~P~v~~~~~~~~~~c~~~~~~~~~~~~~~l~vg~~~~~~P~~~~~~~g~~~G~~vDll~~ia~~lg~~~~ 83 (292)
T 1pb7_A 4 TRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYE 83 (292)
T ss_dssp CCEEEEECCBTTTBEEEECCTTSSCCCCBCTTSCBCCCEEEEEEC--------CEEEEEEESHHHHHHHHHHHHHTCCEE
T ss_pred cEEEEEEEeeCCeEEEecCCCCCccccccccccccccceeecccCCCCCCccccccccCcceeHHHHHHHHHHHcCceEE
Confidence 568888888888887765311 00 1134799999999999999999999
Q ss_pred EEEcCCCCCccccCCC----CcchhhHHHHhhccccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccc
Q psy1412 184 LRLVPDHTYGVYDHET----KEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSF 259 (504)
Q Consensus 184 ~~~~~~~~~G~~~~~~----g~w~gli~~l~~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~f 259 (504)
++.++|++||..+..+ ++|++++++|.+|++|++++++++|++|++.++||.||+..+++++++++...
T Consensus 84 ~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~~i------- 156 (292)
T 1pb7_A 84 VHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRI------- 156 (292)
T ss_dssp EEECTTCCCCCEEECTTSSCEEECHHHHHHHHTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTCCC-------
T ss_pred EEEecCCcccccccccccccCcHHHHHHHHHcCCcCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCcCC-------
Confidence 9999999999987555 48999999999999999999999999999999999999999999999875321
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHhhCCCCccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCccccccc
Q psy1412 260 MNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYEWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGS 339 (504)
Q Consensus 260 l~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s 339 (504)
T Consensus 157 -------------------------------------------------------------------------------- 156 (292)
T 1pb7_A 157 -------------------------------------------------------------------------------- 156 (292)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceehccchhhhhhhhhhhhhhcccchhhhhcc--CC-CCceeeee----ecchhccchhHHHHHHHHHHHhcCCCcccCC
Q psy1412 340 SRTLDTALDSKIEIYQKMWRYMESKKCILFLG--GQ-GDETFVTI----DLSQRADSKIEIYQKMWRYMESKRPSVFVSD 412 (504)
Q Consensus 340 ~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~--~~-~~i~~g~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 412 (504)
++++||. .. ....+|++ ...+++.. ..+.+++..++ .+.+.+
T Consensus 157 -------------------------~~~~dl~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~ 205 (292)
T 1pb7_A 157 -------------------------TGINDPRLRNPSDKFIYATVKQSSVDIYFRRQ--VELSTMYRHME----KHNYES 205 (292)
T ss_dssp -------------------------CSTTCHHHHSCBTTBCEECBTTSHHHHHHHTC--GGGHHHHHHHT----TTCBSS
T ss_pred -------------------------CCCcCccccCcccceEEEEEcCchHHHHhhhc--ccHHHHHHHHH----hhcCCC
Confidence 1122221 00 01112222 12223221 12334444443 345789
Q ss_pred hHHHHHhhhcCC-eEEEeecchhhhhhhcCCccEEcCCccCCcceEEEecCCCCCchHHHHHHHhhhccChhHHHHHhhc
Q psy1412 413 YEEGVKRVLEGD-YAFLMESTMLDYEVQRNCNLTQIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWW 491 (504)
Q Consensus 413 ~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c~l~~vg~~~~~~~~g~a~~k~Spl~~~in~ail~l~e~G~l~~l~~kw~ 491 (504)
.++++++|.+|+ +|++.+...++|+++++|++.+++..+...+|||+++|++||++.||++|++|+++|.+++|.+|||
T Consensus 206 ~~~~~~~l~~G~vDa~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~ 285 (292)
T 1pb7_A 206 AAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWV 285 (292)
T ss_dssp HHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECSSCSEEEEECCEEETTCSSHHHHHHHHHHHHHSSHHHHHHHHHT
T ss_pred HHHHHHHHHcCCceEEEEcHHHHHHHHhcCCCEEEcCccccCCceEEEEeCCCHHHHHHHHHHHHHHhCCCHHHHHHhhC
Confidence 999999999999 9999999999999998999999998888999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q psy1412 492 KNTGDVCNR 500 (504)
Q Consensus 492 ~~~~~~C~~ 500 (504)
. ..+|++
T Consensus 286 ~--~~~c~~ 292 (292)
T 1pb7_A 286 R--YQECDS 292 (292)
T ss_dssp S--SSCCCC
T ss_pred C--CCCCCC
Confidence 8 468974
No 5
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.98 E-value=9.3e-32 Score=264.56 Aligned_cols=243 Identities=34% Similarity=0.598 Sum_probs=193.6
Q ss_pred CCeEEEEEeecccCeEEEecCCCCCC-----------------------------C--------ccceehhHHHHHHHHH
Q psy1412 134 NNVTLIVMTREEKPYVMVKNDANLTG-----------------------------N--------AMFEGFCIDLLKSIAA 176 (504)
Q Consensus 134 ~~~~l~V~~~~~~P~~~~~~~~~~~~-----------------------------~--------~~~~G~~idll~~la~ 176 (504)
.+.+|+|+|.+++||++.++.++ +| + ++++||++||++++++
T Consensus 3 ~~~~l~v~t~~~~P~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~G~~vdll~~ia~ 81 (294)
T 2rc8_A 3 NKLHLRVVTLIEHPFVFTREVDD-EGLCPAGQLCLDPMTNDSSMLDRLFSSLHSSNDTVPIKFKKCCYGYCIDLLEQLAE 81 (294)
T ss_dssp -CEEEEEEECCBTTTBEEECCCT-TSCCTTSEEEECCCCCCHHHHHHHHHHHHSSSCCCCGGGEEEEESHHHHHHHHHHH
T ss_pred CCCEEEEEEEeeCCcEEEecCCC-CCcCccCcccccccccccccchhhhhhcccCCCCCCccccCCceEEhHHHHHHHHH
Confidence 46899999999999999876532 11 0 1278999999999999
Q ss_pred HcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCc
Q psy1412 177 QVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRL 256 (504)
Q Consensus 177 ~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~ 256 (504)
++|++++++.+++++||... +++|++++++|.+|++|++++++++|++|++.++||.||+..+.+++++++..
T Consensus 82 ~lg~~~~~~~~~~~~~g~~~--~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~~~i~~~~~~~----- 154 (294)
T 2rc8_A 82 DMNFDFDLYIVGDGKYGAWK--NGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRGT----- 154 (294)
T ss_dssp HHTEEEEEEECTTCCCCCEE--TTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEEEEEEETTSC-----
T ss_pred HcCCcEEEEECCCCcccccC--CCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcceEEEEECCCC-----
Confidence 99999999999999999865 68999999999999999999999999999999999999999999999986531
Q ss_pred ccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCCCccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccc
Q psy1412 257 FSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYEWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQ 336 (504)
Q Consensus 257 ~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~ 336 (504)
T Consensus 155 -------------------------------------------------------------------------------- 154 (294)
T 2rc8_A 155 -------------------------------------------------------------------------------- 154 (294)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceehccchhhhhhhhhhhhhhcccchhhhhcc---CCCCceeeee----ecchhccchhHHHHHHHHHHHhcCCCcc
Q psy1412 337 QGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLG---GQGDETFVTI----DLSQRADSKIEIYQKMWRYMESKRPSVF 409 (504)
Q Consensus 337 ~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~---~~~~i~~g~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 409 (504)
+|++++||. .+...++|++ ...++++ .++.++..++. +.
T Consensus 155 --------------------------~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~----~~~~~~~~i~~----~~ 200 (294)
T 2rc8_A 155 --------------------------ELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQ----SFPEMHEYMRR----YN 200 (294)
T ss_dssp --------------------------CCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHH----HCHHHHHHHGG----GC
T ss_pred --------------------------CcCChhhhhhcCcccCeEEEEEcCChHHHHHHH----HHHHHHHHHHH----hc
Confidence 123344443 2223344444 2233332 13334333432 23
Q ss_pred cCChHHHHHhhhc--CC-eEEEeecchhhhhhhcC--CccEEcCCccCCcceEEEecCCCCCchHHHHHHHhhhccChhH
Q psy1412 410 VSDYEEGVKRVLE--GD-YAFLMESTMLDYEVQRN--CNLTQIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQ 484 (504)
Q Consensus 410 ~~~~~egi~~v~~--g~-~A~i~e~~~~~y~~~~~--c~l~~vg~~~~~~~~g~a~~k~Spl~~~in~ail~l~e~G~l~ 484 (504)
+.+.++++++|.+ |+ +|++.+...+.|++++. |++..++..+...+|+|+++|++||++.||++|++|+++|.++
T Consensus 201 ~~~~~~~~~~l~~~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~ 280 (294)
T 2rc8_A 201 VPATPDGVQYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMD 280 (294)
T ss_dssp BSSHHHHHHHHHSSSCCCSEEEEEHHHHHHHHHTCSSSCEEECSCCEEEEEECCEECTTCTHHHHHHHHHHHHHHTTHHH
T ss_pred CCCHHHHHHHHHhccCceeEEEecHHHHHHHHhhCCCCCEEEcCCcccccceEEEecCCCHHHHHHHHHHHHHHhCCCHH
Confidence 6789999999998 88 99999999999998764 8999999888889999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCCC
Q psy1412 485 MLYDKWWKNTGDVCNR 500 (504)
Q Consensus 485 ~l~~kw~~~~~~~C~~ 500 (504)
+|.+|||. ...|++
T Consensus 281 ~l~~kw~~--~~~c~~ 294 (294)
T 2rc8_A 281 VLHDKWYK--VVPCGK 294 (294)
T ss_dssp HHHHHHCC--C-----
T ss_pred HHHHhhcC--CCCCCC
Confidence 99999998 478974
No 6
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.97 E-value=1.3e-30 Score=255.11 Aligned_cols=248 Identities=31% Similarity=0.563 Sum_probs=190.2
Q ss_pred CCeEEEEEeecccCeEEEecCCCCC--------------------C-----CccceehhHHHHHHHHHHcCceEEEEEcC
Q psy1412 134 NNVTLIVMTREEKPYVMVKNDANLT--------------------G-----NAMFEGFCIDLLKSIAAQVGFHFVLRLVP 188 (504)
Q Consensus 134 ~~~~l~V~~~~~~P~~~~~~~~~~~--------------------~-----~~~~~G~~idll~~la~~l~f~~~~~~~~ 188 (504)
++++|+|+|.+++||++..+.++.. + .++++|||+||++++++++|++++++.++
T Consensus 3 ~~~~l~v~t~~~~P~v~~~~~~~~~~~~lrvgv~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~i~~~lg~~~~~~~~~ 82 (284)
T 2a5s_A 3 DDNHLSIVTLEEAPFVIVEDIDPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVT 82 (284)
T ss_dssp --CCEEEEECCBTTTBEEEECCCC-CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCCEEEEEEEccCCeEEeeccCCCCCccccccccccccccccccccCCCCCcceeeEEhHHHHHHHHHHCCCCEEEEEcc
Confidence 4678999999999999876542111 1 12589999999999999999999999999
Q ss_pred CCCCccccCCCCcchhhHHHHhhccccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHH
Q psy1412 189 DHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIW 268 (504)
Q Consensus 189 ~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vW 268 (504)
+++||... +++|++++++|.+|++|++++++++|++|.+.++||.||+..+.+++++++.... ++
T Consensus 83 ~~~~g~~~--~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~~~-~~------------ 147 (284)
T 2a5s_A 83 NGKHGKKV--NNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVT-GL------------ 147 (284)
T ss_dssp SSSSCCEE--TTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTCCCC-ST------------
T ss_pred CCccCccc--CCCHHHHHHHHhcCCcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCcccc-cc------------
Confidence 99999863 6799999999999999999999999999999999999999999999998754210 00
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchh
Q psy1412 269 LYVLAAYLLVSFTLFVMARFSPYEWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALD 348 (504)
Q Consensus 269 l~i~~~~~~v~~~~~~i~r~~p~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~ 348 (504)
T Consensus 148 -------------------------------------------------------------------------------- 147 (284)
T 2a5s_A 148 -------------------------------------------------------------------------------- 147 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhhhcccchhhhhccCCCCceeeee----ecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC
Q psy1412 349 SKIEIYQKMWRYMESKKCILFLGGQGDETFVTI----DLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD 424 (504)
Q Consensus 349 Ltv~~~~~~~~~~~~i~s~~dL~~~~~i~~g~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~ 424 (504)
.....++++||.. ..++|++ ....+.. .|+.++..+... ...+.++++++|.+|+
T Consensus 148 -----------~dl~~~~~~~l~~--~~~vg~v~~~s~~~~l~~----~~~~~~~~i~~~----~~~~~~~~l~~l~~G~ 206 (284)
T 2a5s_A 148 -----------SDKKFQRPHDYSP--PFRFGTVPNGSTERNIRN----NYPYMHQYMTRF----NQRGVEDALVSLKTGK 206 (284)
T ss_dssp -----------TSHHHHSGGGSSS--CCCEECCTTSHHHHHHHT----TCHHHHHHHGGG----CCSSHHHHHHHHHTTS
T ss_pred -----------cccccCChhHcCC--CceEEEEeCCchHHHHHH----HHHHHHHHHHhc----cCCCHHHHHHHHHcCC
Confidence 0001123344431 1223332 1112221 233333223221 1368999999999999
Q ss_pred -eEEEeecchhhhhhhcC--CccEEcC--CccCCcceEEEecCCCCCchHHHHHHHhhhccChhHHHHHhhccCCCCCCC
Q psy1412 425 -YAFLMESTMLDYEVQRN--CNLTQIG--GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGDVCN 499 (504)
Q Consensus 425 -~A~i~e~~~~~y~~~~~--c~l~~vg--~~~~~~~~g~a~~k~Spl~~~in~ail~l~e~G~l~~l~~kw~~~~~~~C~ 499 (504)
+|++.+.+.+.|++++. |++..++ ..+...+|+|+++|+++|++.||++|.+++++|.+++|.+||+. +.|+
T Consensus 207 vDa~i~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~~i~~kw~~---~~c~ 283 (284)
T 2a5s_A 207 LDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLT---GICH 283 (284)
T ss_dssp CSEEEEEHHHHHHHHHTCTTSCEEEEECCCGGGCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHTC---CCCC
T ss_pred eeEEEEchHHHHHHHhcCCCCCEEEeCCccccccCceEEEecCCCHHHHHHHHHHHHHHhCChHHHHHHHhhh---ccCC
Confidence 89999999999998875 8998885 56888999999999999999999999999999999999999997 4696
Q ss_pred C
Q psy1412 500 R 500 (504)
Q Consensus 500 ~ 500 (504)
+
T Consensus 284 ~ 284 (284)
T 2a5s_A 284 N 284 (284)
T ss_dssp -
T ss_pred C
Confidence 3
No 7
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.97 E-value=7.2e-30 Score=246.13 Aligned_cols=253 Identities=47% Similarity=0.812 Sum_probs=211.4
Q ss_pred CeEEEEEeecccCeEEEecC-CCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhcc
Q psy1412 135 NVTLIVMTREEKPYVMVKND-ANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKK 213 (504)
Q Consensus 135 ~~~l~V~~~~~~P~~~~~~~-~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~ 213 (504)
+++|+|++...+||.+...+ .+..+++.+.||++||++++++++|++++++.+++++||..++.+.+|++++..|.+|+
T Consensus 3 ~~~l~v~~~~~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~ 82 (263)
T 1mqi_A 3 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGK 82 (263)
T ss_dssp CCCEEEEECCBTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTTS
T ss_pred CeEEEEEEecCCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHHHHcCC
Confidence 56799999999999887542 11122478999999999999999999999999999999988874448999999999999
Q ss_pred ccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q psy1412 214 ADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYEW 293 (504)
Q Consensus 214 ~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~~~ 293 (504)
+|++++++++|++|.+.++||.||+..+.++++++..
T Consensus 83 ~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------- 119 (263)
T 1mqi_A 83 ADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT------------------------------------------- 119 (263)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC-------------------------------------------
T ss_pred cCEEEEeeEecHHHHhhcccccceecccEEEEEcCcc-------------------------------------------
Confidence 9999999999999999999999999999999997542
Q ss_pred cCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhccCC
Q psy1412 294 SNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLGGQ 373 (504)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~~~ 373 (504)
++++++||...
T Consensus 120 ---------------------------------------------------------------------~i~~~~dL~g~ 130 (263)
T 1mqi_A 120 ---------------------------------------------------------------------PIESAEDLSKQ 130 (263)
T ss_dssp ---------------------------------------------------------------------SCCSHHHHHTC
T ss_pred ---------------------------------------------------------------------ccCCHHHHhcc
Confidence 24567777766
Q ss_pred CCceeeee----ecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhh--hcCCeEEEeecchhhhhhhcC-CccEE
Q psy1412 374 GDETFVTI----DLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRV--LEGDYAFLMESTMLDYEVQRN-CNLTQ 446 (504)
Q Consensus 374 ~~i~~g~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v--~~g~~A~i~e~~~~~y~~~~~-c~l~~ 446 (504)
..+.+|++ ....+.+..++.|++++..+......+.+.+.++++++| .+|++|++.+.+.+.|+.++. |++..
T Consensus 131 ~~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~da~~~~~~~~~~~~~~~~~~~~~ 210 (263)
T 1mqi_A 131 TEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMK 210 (263)
T ss_dssp SSSEEECBSSSHHHHHHHHCCSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTTTSEEEEEEHHHHHHHTTSTTCCEEE
T ss_pred cCeeEEEEeccHHHHHHHhccchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcCCcEEEEechHHHHHHHhcCCCceEE
Confidence 54444543 233455555667888887776655567788999999999 899999999999999888766 78888
Q ss_pred cCCccCCcceEEEecCCCCCchHHHHHHHhhhccChhHHHHHhhccCCCCCCCC
Q psy1412 447 IGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGDVCNR 500 (504)
Q Consensus 447 vg~~~~~~~~g~a~~k~Spl~~~in~ail~l~e~G~l~~l~~kw~~~~~~~C~~ 500 (504)
++..+...+++|+++|++++++.||++|.+|+++|.+++|.+||+... ++|+.
T Consensus 211 ~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~k~~~~~-~~C~~ 263 (263)
T 1mqi_A 211 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK-GECGS 263 (263)
T ss_dssp ESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHTTT-CSCC-
T ss_pred cCCcccccceEEEEeCCCccHHHHHHHHHHHHhcccHHHHHHHHcCCC-CCCCC
Confidence 888888899999999999999999999999999999999999999985 88973
No 8
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.96 E-value=4.1e-29 Score=240.64 Aligned_cols=251 Identities=34% Similarity=0.673 Sum_probs=196.7
Q ss_pred CCeEEEEEeecccCeEEEecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhcc
Q psy1412 134 NNVTLIVMTREEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKK 213 (504)
Q Consensus 134 ~~~~l~V~~~~~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~ 213 (504)
++++|+|++...+||.+...+. ....+.+.||++||++++++++|++++++.+++++||.... +++|++++..|.+|+
T Consensus 1 ~~~~l~v~~~~~pP~~~~~~~~-~g~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~-~~~~~~~~~~l~~g~ 78 (265)
T 2v3u_A 1 GGVVLRVVTVLEEPFVMVSENV-LGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQE-DGTWNGLVGELVFKR 78 (265)
T ss_dssp CCCEEEEEECCBTTTBEEECCS-TTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCT-TSCBCHHHHHHHTTS
T ss_pred CCeEEEEEEeccCCeEEEecCC-CCCcceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCC-CCCcchHHHHHHcCC
Confidence 3678999999999998875431 11126899999999999999999999999999999998765 789999999999999
Q ss_pred ccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q psy1412 214 ADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYEW 293 (504)
Q Consensus 214 ~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~~~ 293 (504)
+|++++++++|++|.+.++||.||+..+.+++++++.
T Consensus 79 ~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------- 115 (265)
T 2v3u_A 79 ADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGT------------------------------------------- 115 (265)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC-------------------------------------------
T ss_pred cCeEEeeeEeehhhhccccccceeeeccEEEEEECCC-------------------------------------------
Confidence 9999999999999999999999999999999997642
Q ss_pred cCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhccCC
Q psy1412 294 SNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLGGQ 373 (504)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~~~ 373 (504)
+|++++||.++
T Consensus 116 ---------------------------------------------------------------------~i~~~~dL~~~ 126 (265)
T 2v3u_A 116 ---------------------------------------------------------------------SIQSLQDLSKQ 126 (265)
T ss_dssp ---------------------------------------------------------------------CCCSHHHHHTC
T ss_pred ---------------------------------------------------------------------Cccchhhhhhh
Confidence 13445566532
Q ss_pred CCceeeeeec----chhccch------hHHHHHHHHHHHhcC-CCcccCChHHHHHhhhcCCeEEEeecchhhhhhhcC-
Q psy1412 374 GDETFVTIDL----SQRADSK------IEIYQKMWRYMESKR-PSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRN- 441 (504)
Q Consensus 374 ~~i~~g~~~~----~~~~~s~------~~~~~~~~~~~~~~~-~~~~~~~~~egi~~v~~g~~A~i~e~~~~~y~~~~~- 441 (504)
..+..|+... .++++.. ...|.+++..++..+ ..+.+.+.++++++|.+|+.|++.+...+.|+.+++
T Consensus 127 v~v~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~G~~a~~~~~~~~~~~~~~~~ 206 (265)
T 2v3u_A 127 TDIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINDP 206 (265)
T ss_dssp SSSCEECBTTSHHHHHHHHHHTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHHSSCEEEEEHHHHHHHHHHCT
T ss_pred hcEEEEEeccHHHHHHHHhcCCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHcCCEEEEEcchHHHHHHhcCC
Confidence 2334454421 1222211 123566666554321 234578999999999999988899999998887654
Q ss_pred -CccEEcCCccCCcceEEEecCCCCCchHHHHHHHhhhccChhHHHHHhhccCCCCCCC
Q psy1412 442 -CNLTQIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGDVCN 499 (504)
Q Consensus 442 -c~l~~vg~~~~~~~~g~a~~k~Spl~~~in~ail~l~e~G~l~~l~~kw~~~~~~~C~ 499 (504)
|++..++..+...+++|+++|++|+++.||++|.+|+++|.+++|.+||+... ++|+
T Consensus 207 ~~~l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~kw~~~~-~~c~ 264 (265)
T 2v3u_A 207 DCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKN-GQCD 264 (265)
T ss_dssp TCCEEEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHCCCC-CC--
T ss_pred CccEEEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhCChHHHHHhhcCCCc-CcCC
Confidence 88999998888899999999999999999999999999999999999999975 8896
No 9
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.90 E-value=7.1e-24 Score=202.05 Aligned_cols=223 Identities=17% Similarity=0.223 Sum_probs=168.7
Q ss_pred cCCeEEEEEeecc-cCeEEEecCCCCCCCccceehhHHHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHh
Q psy1412 133 TNNVTLIVMTREE-KPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELM 210 (504)
Q Consensus 133 ~~~~~l~V~~~~~-~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~ 210 (504)
.+.++|+||+..+ |||.+..+ ++.++||++||+++++++| |++++++.. .|++++..|.
T Consensus 6 ~~~~tl~vg~~~~~pP~~~~d~------~G~~~G~~vdl~~~ia~~l~g~~~~~~~~-------------~~~~~~~~l~ 66 (243)
T 4gvo_A 6 QKVQTITVGTGTQFPNVCFLDE------NGKLTGYDVELVKEIDKRLPGYKFKFKTM-------------DFSNLLVSLG 66 (243)
T ss_dssp --CEEEEEEECSEETTTEEECT------TSCEESHHHHHHHHHHHTCTTEEEEEEEC-------------CGGGHHHHHH
T ss_pred ccCCeEEEEECCCCCCeEEECC------CCcEEEhHHHHHHHHHHhccCCeEEEEEC-------------CHHHHHHHHH
Confidence 4678999999754 88887654 3789999999999999998 999999854 6999999999
Q ss_pred hccccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCC
Q psy1412 211 DKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSP 290 (504)
Q Consensus 211 ~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p 290 (504)
+|++|++++++++|++|.+.++||.||+.....+++.++..
T Consensus 67 ~g~~D~~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~--------------------------------------- 107 (243)
T 4gvo_A 67 AGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSN--------------------------------------- 107 (243)
T ss_dssp TTSCSEECSCCBCCHHHHHHSEECSSCCEECCEEEEEETTC---------------------------------------
T ss_pred CCCCCEecccCCCCHHHhhhhhhhhhhcccccceEEEeccc---------------------------------------
Confidence 99999999999999999999999999877665555543321
Q ss_pred CCccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhc
Q psy1412 291 YEWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFL 370 (504)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL 370 (504)
..+++++||
T Consensus 108 -----------------------------------------------------------------------~~~~~~~dL 116 (243)
T 4gvo_A 108 -----------------------------------------------------------------------NSINSTKDL 116 (243)
T ss_dssp -----------------------------------------------------------------------CSCSSGGGG
T ss_pred -----------------------------------------------------------------------cccCchHHh
Confidence 134566777
Q ss_pred cCCCCceeeeeecchhccchh-HHHHHHHHHHHhcCCC--cccCChHHHHHhhhcCC-eEEEeecchhhhhhhcC-CccE
Q psy1412 371 GGQGDETFVTIDLSQRADSKI-EIYQKMWRYMESKRPS--VFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRN-CNLT 445 (504)
Q Consensus 371 ~~~~~i~~g~~~~~~~~~s~~-~~~~~~~~~~~~~~~~--~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~-c~l~ 445 (504)
.+.. .|+... +.. ...+.+..... .... ....+.++++++|.+|+ +|++.+...+.|+.++. .++.
T Consensus 117 ~g~~---v~v~~g-----s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~ 187 (243)
T 4gvo_A 117 AGKR---VITSAT-----SNGALVLKKINEEQG-NNFEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEK 187 (243)
T ss_dssp TTCE---EEECTT-----CHHHHHHHHHHHHTT-SCSEEEECCSGGGSHHHHHHHTSCSBEEECHHHHHHHHHTCSSCEE
T ss_pred cCCe---EEEecC-----chHHHHHHHHHHhcc-ccceeccccCChHHHHHHHHcCCccEEEccHHHHHHHHhhCCCceE
Confidence 6432 222200 000 01111111000 0111 12457789999999999 89999999998887765 5788
Q ss_pred EcCCccCCcceEEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhccC
Q psy1412 446 QIGGLLDSKGYGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWWKN 493 (504)
Q Consensus 446 ~vg~~~~~~~~g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~~~ 493 (504)
.+++.+...+++++++|++| |++.||++|.+|+++|.+++|.+|||+.
T Consensus 188 ~~~~~~~~~~~~~~~~k~~~~l~~~in~~l~~l~~~G~~~~i~~kw~g~ 236 (243)
T 4gvo_A 188 VVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGA 236 (243)
T ss_dssp EEEEEEECCEECCEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCG
T ss_pred EeccCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHCCC
Confidence 88888888999999999988 9999999999999999999999999973
No 10
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.90 E-value=1.5e-23 Score=199.73 Aligned_cols=223 Identities=21% Similarity=0.283 Sum_probs=168.4
Q ss_pred CCeEEEEEeecc-cCeEEEecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhc
Q psy1412 134 NNVTLIVMTREE-KPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDK 212 (504)
Q Consensus 134 ~~~~l~V~~~~~-~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g 212 (504)
+.++|+|++..+ |||.+.... .+++.++||++||++++++++|++++++.+ .|++++..|.+|
T Consensus 10 ~~g~L~Vg~~~~~pP~~~~~~~---d~~g~~~G~~vdl~~~ia~~lg~~~~~~~~-------------~~~~~~~~l~~g 73 (243)
T 4h5g_A 10 QKGKLVVATSPDYAPFEFQSLV---DGKNQVVGADIDMAQAIADELGVKLEILSM-------------SFDNVLTSLQTG 73 (243)
T ss_dssp HHTEEEEEECCCBTTTBEEEEE---TTEEEEESHHHHHHHHHHHHHTSEEEEEEC-------------CGGGHHHHHHTT
T ss_pred hCCEEEEEECCCCCCcEeeecc---CCCCcEEEeHHHHHHHHHHHhCCceEEecc-------------cHHHHHHHHHcC
Confidence 457899999764 888775321 135789999999999999999999999843 699999999999
Q ss_pred cccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy1412 213 KADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYE 292 (504)
Q Consensus 213 ~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~~ 292 (504)
++|++++++++|++|.+.++||.||+..+.++++++.+..
T Consensus 74 ~~d~~~~~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~~~---------------------------------------- 113 (243)
T 4h5g_A 74 KADLAVAGISATDERKEVFDFSIPYYENKISFLVHKADVE---------------------------------------- 113 (243)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSBCCCEEEEEEGGGTT----------------------------------------
T ss_pred CCCcccccccCChhHccEEEccCccccCcccccccccccc----------------------------------------
Confidence 9999999999999999999999999999999999865321
Q ss_pred ccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhccC
Q psy1412 293 WSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLGG 372 (504)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~~ 372 (504)
.+.+++||..
T Consensus 114 ----------------------------------------------------------------------~~~~~~dl~g 123 (243)
T 4h5g_A 114 ----------------------------------------------------------------------KYKDLTSLES 123 (243)
T ss_dssp ----------------------------------------------------------------------TCCSHHHHHT
T ss_pred ----------------------------------------------------------------------cccccccCCC
Confidence 1234555543
Q ss_pred CCCceeeeeecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcCCccEE--c-C
Q psy1412 373 QGDETFVTIDLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNCNLTQ--I-G 448 (504)
Q Consensus 373 ~~~i~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c~l~~--v-g 448 (504)
.. .|..... .+.............+.+.+.++++++|.+|+ +|++.+...+.+++.++.++.. + .
T Consensus 124 ~~---i~v~~g~--------~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~ 192 (243)
T 4h5g_A 124 AN---IAAQKGT--------VPESMVKEQLPKAQLTSLTNMGEAVNELQAGKIDAVHMDEPVALSYAAKNAGLAVATVSL 192 (243)
T ss_dssp SE---EEEETTS--------HHHHHHHHHCTTSEEEEESCHHHHHHHHHHTSCSEEEEEHHHHHHHHHHCTTEEECSCCC
T ss_pred CE---EEecCCc--------HHHHHHHHhcccceeEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHHCCCCceeeccC
Confidence 31 2221000 00000000001122345788999999999999 8999999888877776644332 3 3
Q ss_pred CccCCcceEEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhccC
Q psy1412 449 GLLDSKGYGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWWKN 493 (504)
Q Consensus 449 ~~~~~~~~g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~~~ 493 (504)
......+++|+++|++| |++.||++|.+|+++|.+++|.+||+.-
T Consensus 193 ~~~~~~~~~~a~~k~~~~L~~~~n~aL~~l~~dG~~~~i~~Kw~~~ 238 (243)
T 4h5g_A 193 KMKDGDANAVALRKNSDDLKEVVDKVIQKLKDEGTYQSYLEKAASL 238 (243)
T ss_dssp CCCSSCCBCCEEESSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTS
T ss_pred CcccCceEEEEEeCCCHHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 34566789999999998 9999999999999999999999999863
No 11
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.89 E-value=5.3e-23 Score=194.37 Aligned_cols=207 Identities=22% Similarity=0.327 Sum_probs=167.1
Q ss_pred CeEEEEEeec-ccCeEEEecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhcc
Q psy1412 135 NVTLIVMTRE-EKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKK 213 (504)
Q Consensus 135 ~~~l~V~~~~-~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~ 213 (504)
.++|+|++.. .+||.+... ++.++||++||++++++++|++++++.. +|.+++..|.+|+
T Consensus 4 a~~l~v~~~~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g~ 64 (232)
T 3i6v_A 4 ADTVRMGTEGAYPPYNFIND------AGEVDGFERELGDELCKRAGLTCEWVKN-------------DWDSIIPNLVSGN 64 (232)
T ss_dssp --CEEEEECSEETTTEEECT------TSCEESHHHHHHHHHHHHHTCCEEEEEC-------------CGGGHHHHHHTTS
T ss_pred CCEEEEEECCCCCCeeEECC------CCCEeeehHHHHHHHHHHcCCceEEEEC-------------CHHHHHHHHHCCC
Confidence 4679999984 589988654 3789999999999999999999999853 6999999999999
Q ss_pred ccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q psy1412 214 ADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYEW 293 (504)
Q Consensus 214 ~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~~~ 293 (504)
+|++++++++|++|.+.++||.||+..+.++++++..
T Consensus 65 ~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------- 101 (232)
T 3i6v_A 65 YDTIIAGMSITDERDEVIDFTQNYIPPTASSYVATSD------------------------------------------- 101 (232)
T ss_dssp CSEECSSCBCCHHHHTTSEEEEEEECCCEEEEEESST-------------------------------------------
T ss_pred CCEEEeCCcCCHHHHhhcCcccccccCCeEEEEECCC-------------------------------------------
Confidence 9999999999999999999999999999999998642
Q ss_pred cCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhccCC
Q psy1412 294 SNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLGGQ 373 (504)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~~~ 373 (504)
++||.+
T Consensus 102 -------------------------------------------------------------------------~~dL~g- 107 (232)
T 3i6v_A 102 -------------------------------------------------------------------------GADLSG- 107 (232)
T ss_dssp -------------------------------------------------------------------------TCCTTS-
T ss_pred -------------------------------------------------------------------------hHHhCC-
Confidence 111111
Q ss_pred CCceeeee----ecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcC-CccEEc
Q psy1412 374 GDETFVTI----DLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRN-CNLTQI 447 (504)
Q Consensus 374 ~~i~~g~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~-c~l~~v 447 (504)
++|+. ...+++.. ....+.+.+.++++++|.+|+ +|++.+...+.|++++. +++..+
T Consensus 108 ---~igv~~g~~~~~~l~~~--------------~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~ 170 (232)
T 3i6v_A 108 ---IVAAQTATIQAGYIAES--------------GATLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFV 170 (232)
T ss_dssp ---EEEEETTSHHHHHHHHS--------------SSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTTSSEEE
T ss_pred ---CEEEecCchHHHHHHhc--------------CCeEEEeCCHHHHHHHHHcCCcCEEEEChHHHHHHHHhCCCCeEEe
Confidence 11111 01111110 122344678999999999999 89999999999998877 788888
Q ss_pred CC-ccCCcceEEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhccCC
Q psy1412 448 GG-LLDSKGYGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWWKNT 494 (504)
Q Consensus 448 g~-~~~~~~~g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~~~~ 494 (504)
+. .+...+++|+++|++| +++.||++|.+|.++|.+++|.+||+...
T Consensus 171 ~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~G~~~~i~~k~~~~~ 219 (232)
T 3i6v_A 171 GDDVPLGGGVGMGLRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGED 219 (232)
T ss_dssp EEEEECSSCEEEEECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHCTT
T ss_pred cCCCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCChHHHHHHHHcCCC
Confidence 75 4677889999999987 99999999999999999999999999964
No 12
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.88 E-value=1.4e-22 Score=191.72 Aligned_cols=222 Identities=19% Similarity=0.271 Sum_probs=171.9
Q ss_pred CeEEEEEeec-ccCeEEE-ecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhc
Q psy1412 135 NVTLIVMTRE-EKPYVMV-KNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDK 212 (504)
Q Consensus 135 ~~~l~V~~~~-~~P~~~~-~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g 212 (504)
.++|+|++.. .+||.+. .+ ++.+.|+++||++++++++|++++++.. +|+.++..|.+|
T Consensus 2 ~~~l~v~~~~~~~P~~~~~~~------~g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g 62 (237)
T 3kzg_A 2 SLNLTIGTSKFNPPFEVWSGN------NSSLYGFDIDLMQEICRRLHATCTFEAY-------------IFDDLFPALKNR 62 (237)
T ss_dssp CCEEEEEEESEETTTEECCCT------TSCCBSHHHHHHHHHHHHTTCEEEEEEE-------------CGGGHHHHHHTT
T ss_pred CceEEEEECCCCCCeEEEeCC------CCCEeeehHHHHHHHHHHhCCceEEEEc-------------CHHHHHHHHhCC
Confidence 3689999987 5898876 33 4678999999999999999999999854 589999999999
Q ss_pred cccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy1412 213 KADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYE 292 (504)
Q Consensus 213 ~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~~ 292 (504)
++|+++++++.+++|.+.++||.||+..+.++++++...
T Consensus 63 ~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~~----------------------------------------- 101 (237)
T 3kzg_A 63 EVDLVIASMIITDERKKHFIFSLPYMESNSQYITTVDSK----------------------------------------- 101 (237)
T ss_dssp SSSEECSSCBCCTTGGGTCEECCCSBCCEEEEEEETTCS-----------------------------------------
T ss_pred CCCEEEEccccChhHhccceeeeeeeecceEEEEECCCC-----------------------------------------
Confidence 999999999999999999999999999999999875421
Q ss_pred ccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhccC
Q psy1412 293 WSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLGG 372 (504)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~~ 372 (504)
+++++||.+
T Consensus 102 -----------------------------------------------------------------------~~~~~dL~g 110 (237)
T 3kzg_A 102 -----------------------------------------------------------------------ISTFDDLHG 110 (237)
T ss_dssp -----------------------------------------------------------------------CCSGGGGTT
T ss_pred -----------------------------------------------------------------------CCCHHHhCC
Confidence 355666654
Q ss_pred CCCceeeeeecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcCC--------c
Q psy1412 373 QGDETFVTIDLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNC--------N 443 (504)
Q Consensus 373 ~~~i~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c--------~ 443 (504)
. ++|........ ..+ .+.. .....+.+.+.++++++|.+|+ +|++.+...+.|+.++.. +
T Consensus 111 ~---~i~~~~g~~~~----~~~---~~~~-~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~ 179 (237)
T 3kzg_A 111 K---KIGVRKGTPYA----RQV---LSEN-RNNQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKK 179 (237)
T ss_dssp C---EEEEETTSTHH----HHH---HHTC-SSCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHTTSSTTHHHHCCS
T ss_pred C---EEEEecCCHHH----HHH---HHhC-CCCcEEEeCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhCCccccccCCc
Confidence 3 22222100000 000 0000 0012345678999999999999 999999999999988765 7
Q ss_pred cEEcCCcc-CCcceEEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhccCCCCCCC
Q psy1412 444 LTQIGGLL-DSKGYGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWWKNTGDVCN 499 (504)
Q Consensus 444 l~~vg~~~-~~~~~g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~~~~~~~C~ 499 (504)
+..++..+ ...+++++++|++| +++.||++|.+|+++|.+++|.+||+... ..|+
T Consensus 180 l~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~G~~~~i~~k~~~~~-~~~~ 236 (237)
T 3kzg_A 180 YKLIGKKISIGEGYSIMANPDQFVLIKKINKILLEMEADGTYLRLYSEYFEGH-HHHH 236 (237)
T ss_dssp EEEEEEEEECTTCBCCEECGGGHHHHHHHHHHHHHHHHSSHHHHHHHHHC--------
T ss_pred eEEecCccccCccEEEEEcCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHhCcc-cccC
Confidence 88888777 88899999999976 99999999999999999999999999863 4443
No 13
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.88 E-value=4.2e-22 Score=189.37 Aligned_cols=223 Identities=22% Similarity=0.334 Sum_probs=178.2
Q ss_pred CCeEEEEEee-cccCeEEEecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhc
Q psy1412 134 NNVTLIVMTR-EEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDK 212 (504)
Q Consensus 134 ~~~~l~V~~~-~~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g 212 (504)
+.++|+|++. ..+||.+..++ +.+.|+++||++++++++|++++++.+ +|.+++..|.+|
T Consensus 3 ~~~~l~v~~~~~~~P~~~~~~~------g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g 63 (245)
T 3k4u_A 3 LRGELRVGLEPGYLPFEMKDKK------GNVIGFDVDLAREMAKAMGVKLKLVPT-------------SWDGLIPGLVTE 63 (245)
T ss_dssp CCSEEEEEECTTSTTTCEEETT------TEEESHHHHHHHHHHHHHTCEEEEEEC-------------CGGGHHHHHHTT
T ss_pred cCCeEEEEECCCcCCeeEECCC------CCCccchHHHHHHHHHHhCCeEEEEEc-------------cHHHHHHHHhCC
Confidence 4678999999 67999887543 689999999999999999999999854 599999999999
Q ss_pred cccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy1412 213 KADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYE 292 (504)
Q Consensus 213 ~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~~ 292 (504)
++|+++++++.+.+|.+.++||.||+..+.++++++...
T Consensus 64 ~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~----------------------------------------- 102 (245)
T 3k4u_A 64 KFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLE----------------------------------------- 102 (245)
T ss_dssp SCSEECSSCBCCHHHHTTSEECSCSEEECEEEEEETTTT-----------------------------------------
T ss_pred CcCEEEecCcCCHHHHhhcCcchhhheeceEEEEECCcc-----------------------------------------
Confidence 999998899999999999999999999999999986521
Q ss_pred ccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhccC
Q psy1412 293 WSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLGG 372 (504)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~~ 372 (504)
.++++++||.+
T Consensus 103 ---------------------------------------------------------------------~~i~~~~dL~~ 113 (245)
T 3k4u_A 103 ---------------------------------------------------------------------KGVKSYKDLDK 113 (245)
T ss_dssp ---------------------------------------------------------------------TTCCSGGGGCC
T ss_pred ---------------------------------------------------------------------cccCCHHHhcc
Confidence 13466777764
Q ss_pred CCCceeeeeecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcC--CccEEcCC
Q psy1412 373 QGDETFVTIDLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRN--CNLTQIGG 449 (504)
Q Consensus 373 ~~~i~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~--c~l~~vg~ 449 (504)
. ..++|...... +.............+.+.+.++++++|.+|+ +|++.+...+.+++++. +.+..++.
T Consensus 114 ~-g~~i~v~~g~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~ 184 (245)
T 3k4u_A 114 P-ELTLVTKFGVS--------AEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDT 184 (245)
T ss_dssp S-SCEEEEETTSH--------HHHHHHHHCSSSEEEEESSHHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEEECC
T ss_pred C-CcEEEEeCCcH--------HHHHHHhhCCcCCEEEeCCHHHHHHHHHcCCCcEEEEcHHHHHHHHhcCCccceeecCC
Confidence 2 22333331110 1111111111123345778999999999999 89999999888887665 57888888
Q ss_pred ccCCcceEEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhccCC
Q psy1412 450 LLDSKGYGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWWKNT 494 (504)
Q Consensus 450 ~~~~~~~g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~~~~ 494 (504)
.+...+++++++|++| +++.||++|.+++++|.+++|.+||+...
T Consensus 185 ~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~ 230 (245)
T 3k4u_A 185 SLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDT 230 (245)
T ss_dssp CCSCEEECCEECTTCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTCC
T ss_pred CcccccEEEEEcCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhcCcc
Confidence 8889999999999998 99999999999999999999999999975
No 14
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.87 E-value=1.1e-21 Score=185.96 Aligned_cols=222 Identities=19% Similarity=0.252 Sum_probs=174.1
Q ss_pred cCCeEEEEEee-cccCeEEEecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhh
Q psy1412 133 TNNVTLIVMTR-EEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMD 211 (504)
Q Consensus 133 ~~~~~l~V~~~-~~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~ 211 (504)
...++|+|++. ..+||.+... ++.++|+++||++++++++|++++++.. +|++++..|.+
T Consensus 8 ~~~~~l~v~~~~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~ 68 (242)
T 3del_B 8 SNSEKFIVGTNATYPPFEFVDK------RGEVVGFDIDLAREISNKLGKTLDVREF-------------SFDALILNLKQ 68 (242)
T ss_dssp ---CEEEEEECSCBTTTBEECT------TSCEESHHHHHHHHHHHHHTCEEEEEEC-------------CGGGHHHHHHT
T ss_pred ccCCcEEEEeCCCCCCeeEECC------CCCEEEeeHHHHHHHHHHcCCceEEEEc-------------CHHHHHHHHhC
Confidence 35678999997 4589887644 3789999999999999999999999853 69999999999
Q ss_pred ccccceecceeeecccceeeeecccee--eccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhC
Q psy1412 212 KKADLAVASMTINYARESVIDFTKPFM--NLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFS 289 (504)
Q Consensus 212 g~~D~av~~~tit~~R~~~vdFs~p~~--~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~ 289 (504)
|++|+++++++.+.+|.+.++| .||+ ..+.++++++..
T Consensus 69 g~~D~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~--------------------------------------- 108 (242)
T 3del_B 69 HRIDAVITGMSITPSRLKEILM-IPYYGEEIKHLVLVFKGE--------------------------------------- 108 (242)
T ss_dssp TSSSEECSSBBCCHHHHTTEEE-EEEEEEEESEEEEEEESC---------------------------------------
T ss_pred CCcCEEEecCcCCHHHHhcccc-eeeeecCCceEEEEeCCC---------------------------------------
Confidence 9999999899999999999999 9999 999999987541
Q ss_pred CCCccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhh
Q psy1412 290 PYEWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILF 369 (504)
Q Consensus 290 p~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~d 369 (504)
++++++|
T Consensus 109 -------------------------------------------------------------------------~i~~~~d 115 (242)
T 3del_B 109 -------------------------------------------------------------------------NKHPLPL 115 (242)
T ss_dssp -------------------------------------------------------------------------CSCCCCG
T ss_pred -------------------------------------------------------------------------CCCCHHH
Confidence 2345566
Q ss_pred ccCCCCceeeeeecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcCCccEEcC
Q psy1412 370 LGGQGDETFVTIDLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNCNLTQIG 448 (504)
Q Consensus 370 L~~~~~i~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c~l~~vg 448 (504)
|.... +|..... .+...... ......+.+.+.++++++|.+|+ +|++.+...+.|++++...+..++
T Consensus 116 L~g~~---i~v~~g~--------~~~~~l~~-~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~ 183 (242)
T 3del_B 116 TQYRS---VAVQTGT--------YQEAYLQS-LSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTAT 183 (242)
T ss_dssp GGSSC---EEEETTS--------HHHHHHHH-STTCCEEEESSHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEE
T ss_pred hCCCE---EEEEcCc--------HHHHHHHh-CCCceEEEECCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCeEEec
Confidence 65432 2222100 01000000 11123345678999999999999 899999999999988887788888
Q ss_pred CccCCcc----eEEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhccCCCCCCCC
Q psy1412 449 GLLDSKG----YGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWWKNTGDVCNR 500 (504)
Q Consensus 449 ~~~~~~~----~g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~~~~~~~C~~ 500 (504)
..+...+ ++|+++|++| +++.||++|.+|.++|.+++|.+||+.. ..|+.
T Consensus 184 ~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~--~~~~~ 238 (242)
T 3del_B 184 IDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLN--NLEHH 238 (242)
T ss_dssp EECCGGGCEEEEEEEEETTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTGG--GCSST
T ss_pred CccCcccccceEEEEEeCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHCCC--CCccc
Confidence 7777777 9999999987 9999999999999999999999999985 44544
No 15
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.86 E-value=2.1e-21 Score=182.39 Aligned_cols=219 Identities=16% Similarity=0.281 Sum_probs=173.1
Q ss_pred CCeEEEEEeecccCeEEE--ecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhh
Q psy1412 134 NNVTLIVMTREEKPYVMV--KNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMD 211 (504)
Q Consensus 134 ~~~~l~V~~~~~~P~~~~--~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~ 211 (504)
+.++|+|++...+||.+. .. ++.+.|+++|+++++++++|++++++.. .+|++++..|.+
T Consensus 2 ~~~~l~v~~~~~~P~~~~~~~~------~g~~~G~~~dl~~~i~~~~g~~~~~~~~------------~~~~~~~~~l~~ 63 (233)
T 1ii5_A 2 SAMALKVGVVGNPPFVFYGEGK------NAAFTGISLDVWRAVAESQKWNSEYVRQ------------NSISAGITAVAE 63 (233)
T ss_dssp CSCCEEEEECCCTTTCEEC-----------CEESHHHHHHHHHHHHHTCCEEEEEC------------SCHHHHHHHHHT
T ss_pred CCceEEEEecCCCCeEEEecCC------CCCEEEEeHHHHHHHHHHcCCcEEEEEe------------CCHHHHHHHHHC
Confidence 356799999888999886 33 3689999999999999999999999854 269999999999
Q ss_pred ccccceecceeeecccc--eeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhC
Q psy1412 212 KKADLAVASMTINYARE--SVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFS 289 (504)
Q Consensus 212 g~~D~av~~~tit~~R~--~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~ 289 (504)
|++|+++++++++.+|. +.++||.||+..+.++++++...
T Consensus 64 g~~D~~~~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~-------------------------------------- 105 (233)
T 1ii5_A 64 GELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTAT-------------------------------------- 105 (233)
T ss_dssp TSCSEEEEEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGT--------------------------------------
T ss_pred CCcCEEEeeeecCccccccceeEEccceeecCeEEEEECCCC--------------------------------------
Confidence 99999998899999999 99999999999999999986531
Q ss_pred CCCccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhh
Q psy1412 290 PYEWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILF 369 (504)
Q Consensus 290 p~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~d 369 (504)
.++.+++|
T Consensus 106 ------------------------------------------------------------------------~~i~~~~d 113 (233)
T 1ii5_A 106 ------------------------------------------------------------------------PLFRSVGD 113 (233)
T ss_dssp ------------------------------------------------------------------------TTCSSGGG
T ss_pred ------------------------------------------------------------------------CCCCCHHH
Confidence 12456677
Q ss_pred ccCCCCceeeeeecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcC--CccEE
Q psy1412 370 LGGQGDETFVTIDLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRN--CNLTQ 446 (504)
Q Consensus 370 L~~~~~i~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~--c~l~~ 446 (504)
|... ++|...... +....... ....+.+.+.++++++|.+|+ +|++.+...+.|+.++. .++..
T Consensus 114 L~g~---~v~~~~g~~--------~~~~l~~~--~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~ 180 (233)
T 1ii5_A 114 LKNK---EVAVVRDTT--------AVDWANFY--QADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEV 180 (233)
T ss_dssp GTTC---EEEEETTSH--------HHHHHHHT--TCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEE
T ss_pred hCCC---eEEEECCcc--------HHHHHHHc--CCCeEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCcEEE
Confidence 7643 233221100 00100000 122345678999999999999 89999999999888776 37888
Q ss_pred cCCccCCcceEEEecCCCCCchHHHHHHHhhhccChhHHHHHhhccC
Q psy1412 447 IGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKN 493 (504)
Q Consensus 447 vg~~~~~~~~g~a~~k~Spl~~~in~ail~l~e~G~l~~l~~kw~~~ 493 (504)
++..+...+++++++|++|+.+.+|++|.+|+++|.+++|.+||+..
T Consensus 181 ~~~~~~~~~~~~~~~k~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~ 227 (233)
T 1ii5_A 181 TEIRVSLEPYGFVLKENSPLQKTINVEMLNLLYSRVIAEFTERWLGP 227 (233)
T ss_dssp CSCCSEEEEEEEEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHC-
T ss_pred eCccccccceEEEEcCCchHHHHHHHHHHHHHhCCcHHHHHHHHcCC
Confidence 88777788999999999999999999999999999999999999974
No 16
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.86 E-value=2.7e-21 Score=184.34 Aligned_cols=220 Identities=20% Similarity=0.383 Sum_probs=174.3
Q ss_pred cCCeEEEEEee-cccCeEEEecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhh
Q psy1412 133 TNNVTLIVMTR-EEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMD 211 (504)
Q Consensus 133 ~~~~~l~V~~~-~~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~ 211 (504)
...++|+|++. ..+||.+. + ++.+.|+++||++++++++|++++++.. +|..++..|.+
T Consensus 21 ~~~~~l~v~~~~~~~P~~~~-~------~g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~ 80 (249)
T 4f3p_A 21 SMAKELVVGTDTSFMPFEFK-Q------GDKYVGFDLDLWAEIAKGAGWTYKIQPM-------------DFAGLIPALQT 80 (249)
T ss_dssp ---CCEEEEEESCBTTTBEE-E------TTEEESHHHHHHHHHHHHHTCCEEEEEE-------------CGGGHHHHHHT
T ss_pred ccCceEEEEeCCCCCCeEEe-c------CCeEEEEhHHHHHHHHHHcCCceEEEec-------------CHHHHHHHHHC
Confidence 35678999998 56999876 3 3688999999999999999999999864 58999999999
Q ss_pred ccccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCC
Q psy1412 212 KKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPY 291 (504)
Q Consensus 212 g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~ 291 (504)
|++|+++++++.+.+|.+.++||.||+..+.++++++...
T Consensus 81 g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~---------------------------------------- 120 (249)
T 4f3p_A 81 QNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNT---------------------------------------- 120 (249)
T ss_dssp TSCSEEEEEEECCHHHHTTEEECSCCEEEEEEEEEETTCC----------------------------------------
T ss_pred CCCCEEEeccccCHHHHcCcceecceeeccEEEEEECCCC----------------------------------------
Confidence 9999999999999999999999999999999999875431
Q ss_pred CccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhcc
Q psy1412 292 EWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLG 371 (504)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~ 371 (504)
.+++++||.
T Consensus 121 -----------------------------------------------------------------------~i~~~~dL~ 129 (249)
T 4f3p_A 121 -----------------------------------------------------------------------TIKSIDDLN 129 (249)
T ss_dssp -----------------------------------------------------------------------SCCSSGGGT
T ss_pred -----------------------------------------------------------------------CcCChHHhC
Confidence 245566775
Q ss_pred CCCCceeeeeecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcC--CccEEcC
Q psy1412 372 GQGDETFVTIDLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRN--CNLTQIG 448 (504)
Q Consensus 372 ~~~~i~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~--c~l~~vg 448 (504)
+. ++|...... +.............+.+.+.++++++|.+|+ +|++.+...+.|+.++. .++..++
T Consensus 130 g~---~i~v~~g~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~ 198 (249)
T 4f3p_A 130 GK---VIAAKTGTA--------TIDWIKAHLKPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAG 198 (249)
T ss_dssp TS---EEEEETTSH--------HHHHHHHHCCCSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEE
T ss_pred CC---EEEEeCCCh--------HHHHHHhcCCCceEEEcCCHHHHHHHHHcCCeeEEEeCcHHHHHHHHhCCCCceEEec
Confidence 43 233221100 0000000001122345678999999999999 89999999999998776 4588888
Q ss_pred CccCCcceEEEecCCCCCchHHHHHHHhhhccChhHHHHHhhccCC
Q psy1412 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNT 494 (504)
Q Consensus 449 ~~~~~~~~g~a~~k~Spl~~~in~ail~l~e~G~l~~l~~kw~~~~ 494 (504)
..+...+++++++|++|+++.||++|.+++++|.+++|.+||+...
T Consensus 199 ~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 244 (249)
T 4f3p_A 199 APVSGDKYGIGFPKGSPLVAKVNAELARMKADGRYAKIYKKWFGSE 244 (249)
T ss_dssp EEEEEEEEEEEEETTCTHHHHHHHHHHHHHHHTHHHHHHHHHHSSC
T ss_pred CCCCCccEEEEEcCCchHHHHHHHHHHHHHhCCcHHHHHHHHcCCC
Confidence 8888889999999999999999999999999999999999999853
No 17
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.86 E-value=4.7e-21 Score=181.09 Aligned_cols=222 Identities=15% Similarity=0.263 Sum_probs=173.1
Q ss_pred cCCeEEEEEeec-ccCeEEEecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhh
Q psy1412 133 TNNVTLIVMTRE-EKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMD 211 (504)
Q Consensus 133 ~~~~~l~V~~~~-~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~ 211 (504)
.+.++|+|++.. .+||.+... ++.+.|+++||++++++++|++++++.. +|+.++..|.+
T Consensus 12 ~~~~~l~v~~~~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~ 72 (239)
T 3kbr_A 12 LESGVLRVATTGDYKPFSYRTE------EGGYAGFDVDMAQRLAESLGAKLVVVPT-------------SWPNLMRDFAD 72 (239)
T ss_dssp HHHTEEEEEECSEETTTEEECT------TSCEESHHHHHHHHHHHHTTCEEEEEEC-------------CTTTHHHHHHT
T ss_pred hhCCeEEEEECCCCCCeeEECC------CCCEEeehHHHHHHHHHHHCCceEEEEe-------------CHHHHHHHHHC
Confidence 356789999975 489888654 3789999999999999999999999854 58999999999
Q ss_pred ccccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCC
Q psy1412 212 KKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPY 291 (504)
Q Consensus 212 g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~ 291 (504)
|++|+++++++.+++|.+.++||.||+..+.++++++...
T Consensus 73 g~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~---------------------------------------- 112 (239)
T 3kbr_A 73 DRFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEE---------------------------------------- 112 (239)
T ss_dssp TCCSEECSSCBCCHHHHTTCEECSCSEEECEEEEEEGGGG----------------------------------------
T ss_pred CCcCEEEeCCcCCHHHcCccccchHHhccCcEEEEECCcc----------------------------------------
Confidence 9999998999999999999999999999999999986431
Q ss_pred CccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhcc
Q psy1412 292 EWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLG 371 (504)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~ 371 (504)
.++++++||.
T Consensus 113 ----------------------------------------------------------------------~~i~~~~dL~ 122 (239)
T 3kbr_A 113 ----------------------------------------------------------------------ARFQTLEQID 122 (239)
T ss_dssp ----------------------------------------------------------------------GGGSSHHHHS
T ss_pred ----------------------------------------------------------------------cccCCHHHhc
Confidence 1356777887
Q ss_pred CCCCceeeeeecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcCCccEEcC--
Q psy1412 372 GQGDETFVTIDLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNCNLTQIG-- 448 (504)
Q Consensus 372 ~~~~i~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c~l~~vg-- 448 (504)
+.. .++|..... .+.............+.+.+.++++++|.+|+ +|++.+...+.|+.+++.++..+.
T Consensus 123 ~~g-~~v~~~~g~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~ 193 (239)
T 3kbr_A 123 QPG-VTAIVNPGG--------TNEKFARANLKKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQ 193 (239)
T ss_dssp STT-CEEEECTTS--------HHHHHHHHHCSSSEEEECCCTTTHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECCCC
T ss_pred CCC-cEEEEcCCC--------cHHHHHHHhCCCCceEEeCCHHHHHHHHHcCCcCEEEEchHHHHHHHHhCCCcEEecCC
Confidence 322 233333111 01111111111122344678899999999999 899999999999988877776665
Q ss_pred CccCCcceEEEecCCCCCchHHHHHHHhhhccChhHHHHHhhcc
Q psy1412 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWK 492 (504)
Q Consensus 449 ~~~~~~~~g~a~~k~Spl~~~in~ail~l~e~G~l~~l~~kw~~ 492 (504)
..+...+++++++|+..+++.||++|.+|+++|.+++|.+||++
T Consensus 194 ~~~~~~~~~~~~~k~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~ 237 (239)
T 3kbr_A 194 QPFDFAEKAYLLPRDEAFKRYVDQWLHIAEQSGLLRQRMEHWLE 237 (239)
T ss_dssp -CCCCEEECCEECSCHHHHHHHHHHHHHHHHHTHHHHHHHHHC-
T ss_pred CCccccceEEEEcCCHHHHHHHHHHHHHHHHCCcHHHHHHHHhc
Confidence 35778899999999334999999999999999999999999986
No 18
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.85 E-value=3e-21 Score=186.09 Aligned_cols=221 Identities=15% Similarity=0.268 Sum_probs=174.6
Q ss_pred cCCeEEEEEeecc-cCeEEEecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhh
Q psy1412 133 TNNVTLIVMTREE-KPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMD 211 (504)
Q Consensus 133 ~~~~~l~V~~~~~-~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~ 211 (504)
...++|+|++..+ +||.+..+ ++.+.|+++||++++++++|++++++.. +|..++..|.+
T Consensus 18 ~~~~~l~v~~~~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~ 78 (268)
T 3hv1_A 18 TKEKKIKIGFDATFVPMGYEEK------DGSYIGFDIDLANAVFKLYGIDVEWQAI-------------DWDMKETELKN 78 (268)
T ss_dssp HHHTEEEEEECTEETTTEEECT------TSCEECHHHHHHHHHHHTTTCEEEEEEC-------------CGGGHHHHHHH
T ss_pred hcCCcEEEEECCCCCCceEECC------CCCEEEehHHHHHHHHHHhCCcEEEEEC-------------CHHHHHHHHHC
Confidence 4567899999854 89988654 3789999999999999999999999854 59999999999
Q ss_pred ccccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCC
Q psy1412 212 KKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPY 291 (504)
Q Consensus 212 g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~ 291 (504)
|++|+++++++.+.+|.+.++||.||+..+.++++++..
T Consensus 79 g~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~----------------------------------------- 117 (268)
T 3hv1_A 79 GTIDLIWNGYSVTDERKQSADFTEPYMVNEQVLVTKKSS----------------------------------------- 117 (268)
T ss_dssp TSCSEECSSCBCCHHHHTTCEECCCCEEECEEEEEEGGG-----------------------------------------
T ss_pred CCCCEEEecCccCHHHHhcCcCcHHHeeCceEEEEECCC-----------------------------------------
Confidence 999999989999999999999999999999999988642
Q ss_pred CccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhcc
Q psy1412 292 EWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLG 371 (504)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~ 371 (504)
+|++++||.
T Consensus 118 -----------------------------------------------------------------------~i~~~~dL~ 126 (268)
T 3hv1_A 118 -----------------------------------------------------------------------GIDSVAGMA 126 (268)
T ss_dssp -----------------------------------------------------------------------CCCSSGGGT
T ss_pred -----------------------------------------------------------------------CCCCHHHhC
Confidence 234556664
Q ss_pred CCCCcee--eeeecchhccchhHHHHHHHHHHHh---cCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcC---C
Q psy1412 372 GQGDETF--VTIDLSQRADSKIEIYQKMWRYMES---KRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRN---C 442 (504)
Q Consensus 372 ~~~~i~~--g~~~~~~~~~s~~~~~~~~~~~~~~---~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~---c 442 (504)
+.. |.+ |+.....+.... ..++. ....+.+.+.++++++|.+|+ +|++.+...+.|++++. +
T Consensus 127 g~~-i~v~~g~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~ 197 (268)
T 3hv1_A 127 GKT-LGAQAGSSGYDAFNASP--------KILKDVVANQKVVQYSTFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLD 197 (268)
T ss_dssp TCC-EEEETTCHHHHHHHHCT--------TTTTTTSGGGCEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGG
T ss_pred CCE-EEEEeCCchHHHHHHhh--------HHHhhhcccceEEEeCCHHHHHHHHHcCCCCEEEeCHHHHHHHHHhCCCCC
Confidence 331 111 111111111000 00000 012344678999999999999 89999999999888765 5
Q ss_pred ccEEcCCccCCcceEEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhccC
Q psy1412 443 NLTQIGGLLDSKGYGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWWKN 493 (504)
Q Consensus 443 ~l~~vg~~~~~~~~g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~~~ 493 (504)
++..++..+...+++++++|++| +++.||++|.++.++|.+++|.+||+..
T Consensus 198 ~l~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~ 249 (268)
T 3hv1_A 198 QYNVMPAGYEGESFAVGARKVDKTLIKKINQGFETLYKNGEFQKISNKWFGE 249 (268)
T ss_dssp GEEEEECSSCCEEECCEECTTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred ceEECCCCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHhcCC
Confidence 78888888888999999999997 9999999999999999999999999985
No 19
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.85 E-value=8.3e-21 Score=179.94 Aligned_cols=219 Identities=17% Similarity=0.323 Sum_probs=169.9
Q ss_pred CCeEEEEEee-cccCeEEEecCCCCCCCccceehhHHHHHHHHHHcC-ceEEEEEcCCCCCccccCCCCcchhhHHHHhh
Q psy1412 134 NNVTLIVMTR-EEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVG-FHFVLRLVPDHTYGVYDHETKEWNGIVKELMD 211 (504)
Q Consensus 134 ~~~~l~V~~~-~~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~-f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~ 211 (504)
..++|+|++. ..+||.+. + ++.+.|+++||++++++++| ++++++.. +|.+++..|.+
T Consensus 6 ~~~~l~v~~~~~~~P~~~~-~------~g~~~G~~~dl~~~i~~~~g~~~~~~~~~-------------~~~~~~~~l~~ 65 (246)
T 4eq9_A 6 SKKEIIVATNGSPRPFIYE-E------NGELTGYEIEVVRAIFKDSDKYDVKFEKT-------------EWSGVFAGLDA 65 (246)
T ss_dssp -CEEEEEEECCCSTTTSEE-E------TTEEESHHHHHHHHHHTTCSSEEEEEEEC-------------CHHHHHHHHHT
T ss_pred CCCEEEEEeCCCcCCeEEc-C------CCCCcccHHHHHHHHHHHcCCceEEEEeC-------------CHHHHHHHHhC
Confidence 4578999998 45898873 3 36899999999999999999 99999854 69999999999
Q ss_pred ccccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCC
Q psy1412 212 KKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPY 291 (504)
Q Consensus 212 g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~ 291 (504)
|++|+++++++++.+|.+.++||.||+..+.++++++...
T Consensus 66 g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~---------------------------------------- 105 (246)
T 4eq9_A 66 DRYNMAVNNLSYTKERAEKYLYAAPIAQNPNVLVVKKDDS---------------------------------------- 105 (246)
T ss_dssp TSCSEECSSCCCCHHHHHHEEECCCCEECCEEEEEETTCC----------------------------------------
T ss_pred CCcCEEecccccChhhhhceeeccceecCceEEEEECCCC----------------------------------------
Confidence 9999999999999999999999999999999999986211
Q ss_pred CccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhcc
Q psy1412 292 EWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLG 371 (504)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~ 371 (504)
++++++||.
T Consensus 106 -----------------------------------------------------------------------~i~~~~dL~ 114 (246)
T 4eq9_A 106 -----------------------------------------------------------------------SIKSLDDIG 114 (246)
T ss_dssp -----------------------------------------------------------------------SCSSGGGCT
T ss_pred -----------------------------------------------------------------------CCCCHHHhC
Confidence 245566776
Q ss_pred CCCCceeeeeecchhccchhHHHHHHHHHHHhcC--CCcc--c-CChHHHHHhhhcCC-eEEEeecchhhhhhhcC--Cc
Q psy1412 372 GQGDETFVTIDLSQRADSKIEIYQKMWRYMESKR--PSVF--V-SDYEEGVKRVLEGD-YAFLMESTMLDYEVQRN--CN 443 (504)
Q Consensus 372 ~~~~i~~g~~~~~~~~~s~~~~~~~~~~~~~~~~--~~~~--~-~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~--c~ 443 (504)
.. ++|....... . ..+........ .... . .+.++++++|.+|+ +|++.+...+.|++++. .+
T Consensus 115 g~---~i~~~~g~~~-----~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~ 184 (246)
T 4eq9_A 115 GK---STEVVQATTS-----A--KQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQFDYKIFDKIGVETVIKNQGLDN 184 (246)
T ss_dssp TC---EEEECTTCHH-----H--HHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHHTCTT
T ss_pred CC---EEEEecCccH-----H--HHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCCceEEEecHHHHHHHHHhCCCCC
Confidence 43 2232211000 0 01111111111 1111 2 48899999999999 89999999999888765 36
Q ss_pred cEEcCCccCCcc-eEEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhccC
Q psy1412 444 LTQIGGLLDSKG-YGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWWKN 493 (504)
Q Consensus 444 l~~vg~~~~~~~-~g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~~~ 493 (504)
+..++......+ ++++++|++| +++.||++|.+|+++|.+++|.+||+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~ 236 (246)
T 4eq9_A 185 LKVIELPSDQQPYVYPLLAQGQDELKSFVDKRIKELYKDGTLEKLSKQFFGD 236 (246)
T ss_dssp EEEEECCCSSCCEECCEEETTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred ceEecCcCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhcCC
Confidence 888887666665 8999999997 9999999999999999999999999984
No 20
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.84 E-value=4.3e-21 Score=179.39 Aligned_cols=218 Identities=30% Similarity=0.463 Sum_probs=169.3
Q ss_pred eEEEEEeecccCeEEEecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhcccc
Q psy1412 136 VTLIVMTREEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKAD 215 (504)
Q Consensus 136 ~~l~V~~~~~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D 215 (504)
++|+|++...+||.+. + ++.+.|+++|+++++++++|++++++..+ .|.+++..|.+|++|
T Consensus 3 ~~l~v~~~~~~P~~~~-~------~g~~~G~~~dl~~~~~~~~g~~~~~~~~~------------~~~~~~~~l~~g~~D 63 (228)
T 2pyy_A 3 QPLLVATRVIPPFVLS-N------KGELSGFSIDLWRSIATQIGIESKLIEYS------------SVPELISAIKDNKVN 63 (228)
T ss_dssp -CEEEEECCBTTTBBC-C---------CBSHHHHHHHHHHHHHTCCEEEEECS------------SHHHHHHHHHTTSCS
T ss_pred ceEEEEecCCCCeEEe-c------CCceEEEeHHHHHHHHHHhCCcEEEEEcC------------CHHHHHHHHHCCCcC
Confidence 5799999988998875 3 36789999999999999999999998653 589999999999999
Q ss_pred ceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCCCccC
Q psy1412 216 LAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYEWSN 295 (504)
Q Consensus 216 ~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~~~~~ 295 (504)
+++++++.+.+|.+.+.|+.||...+.++++++.++
T Consensus 64 ~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~-------------------------------------------- 99 (228)
T 2pyy_A 64 LGIAAISITAEREQNFDFSLPIFASGLQIMVRNLES-------------------------------------------- 99 (228)
T ss_dssp EECSSCBCCHHHHHHSEECSCSEEEEEEEEEEC-----------------------------------------------
T ss_pred EEEeccccCHHHHccceecccchhcceEEEEECCcc--------------------------------------------
Confidence 999889999999999999999999999999986531
Q ss_pred CCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhccCCCC
Q psy1412 296 PHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLGGQGD 375 (504)
Q Consensus 296 ~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~~~~~ 375 (504)
...++.+++||.+.
T Consensus 100 ----------------------------------------------------------------~~~~~~~~~dL~g~-- 113 (228)
T 2pyy_A 100 ----------------------------------------------------------------GTGDIRSIDDLPGK-- 113 (228)
T ss_dssp ------------------------------------------------------------------CCCCSGGGCTTC--
T ss_pred ----------------------------------------------------------------ccCCcCCHHHcCCC--
Confidence 01235667777643
Q ss_pred ceeeeeecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcC--CccEEcCCccC
Q psy1412 376 ETFVTIDLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRN--CNLTQIGGLLD 452 (504)
Q Consensus 376 i~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~--c~l~~vg~~~~ 452 (504)
++|...... +....+. ..-..+.+.+.++++++|.+|+ +|++.+...+.++.++. +++..++..+.
T Consensus 114 -~i~~~~g~~--------~~~~l~~--~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2pyy_A 114 -VVATTAGST--------AATYLRE--HHISVLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILR 182 (228)
T ss_dssp -EEEEETTSH--------HHHHHHH--TTCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEE
T ss_pred -eEEEEcCcH--------HHHHHHH--cCCceEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEeccccc
Confidence 233321110 1111110 0112344678999999999999 89999999888887765 57887776677
Q ss_pred CcceEEEecCCCCCchHHHHHHHhhhccChhHHHHHhhccC
Q psy1412 453 SKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKN 493 (504)
Q Consensus 453 ~~~~g~a~~k~Spl~~~in~ail~l~e~G~l~~l~~kw~~~ 493 (504)
..+++++++|++++.+.+|++|.+++++|.+++|.+||+..
T Consensus 183 ~~~~~~~~~~~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~ 223 (228)
T 2pyy_A 183 EESYGIILPNNSPYRKPINQALLNLKENGTYQSLYDKWFDP 223 (228)
T ss_dssp EEEECCEECTTCTTHHHHHHHHHHHHHTTHHHHHHHHHHCC
T ss_pred ceeEEEEEeCChHHHHHHHHHHHHHHhCCcHHHHHHHHcCC
Confidence 77899999999999999999999999999999999999974
No 21
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.84 E-value=2.5e-20 Score=174.11 Aligned_cols=216 Identities=19% Similarity=0.273 Sum_probs=166.0
Q ss_pred eEEEEEeec-ccCeEEEecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccc
Q psy1412 136 VTLIVMTRE-EKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKA 214 (504)
Q Consensus 136 ~~l~V~~~~-~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~ 214 (504)
++|+|++.. .+||.+..+ ++.+.|+++|+++++++++|++++++.. +|..++..|.+|++
T Consensus 2 ~~l~v~~~~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g~~ 62 (227)
T 3tql_A 2 DTIKFATEATYPPYVYMGP------SGQVEGFGADIVKAVCKQMQAVCTISNQ-------------PWDSLIPSLKLGKF 62 (227)
T ss_dssp CEEEEEECSCBTTTBEEC--------CCEESHHHHHHHHHHHHTTCEEEEEEC-------------CHHHHHHHHHHTSC
T ss_pred ceEEEEEcCCCCCeeEECC------CCCcccchHHHHHHHHHHhCCeEEEEeC-------------CHHHHHHHHhCCCC
Confidence 579999986 689887654 3679999999999999999999999853 59999999999999
Q ss_pred cceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q psy1412 215 DLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYEWS 294 (504)
Q Consensus 215 D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~~~~ 294 (504)
|+++++++.+.+|.+.++||.||...+.++++++..+.
T Consensus 63 D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~~------------------------------------------ 100 (227)
T 3tql_A 63 DALFGGMNITTARQKEVDFTDPYYTNSVSFIADKNTPL------------------------------------------ 100 (227)
T ss_dssp SEECSSCBCCTTGGGTEEECSCSBCCEEEEEEETTSCC------------------------------------------
T ss_pred CEEEecCcCCHhHHhheecccceeccceEEEEeCCCCC------------------------------------------
Confidence 99988999999999999999999999999998865321
Q ss_pred CCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhccCCC
Q psy1412 295 NPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLGGQG 374 (504)
Q Consensus 295 ~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~~~~ 374 (504)
+++++||.+.
T Consensus 101 ---------------------------------------------------------------------~~~~~dL~g~- 110 (227)
T 3tql_A 101 ---------------------------------------------------------------------TLSKQGLKGK- 110 (227)
T ss_dssp ---------------------------------------------------------------------CCSTTTTTTC-
T ss_pred ---------------------------------------------------------------------CCCHHHhCCC-
Confidence 1344555432
Q ss_pred CceeeeeecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcCC--ccEEcCCcc
Q psy1412 375 DETFVTIDLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNC--NLTQIGGLL 451 (504)
Q Consensus 375 ~i~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c--~l~~vg~~~ 451 (504)
++|........ . .+.+........+.+.+.++++++|.+|+ +|++.+...+.+++++.. ++..++..+
T Consensus 111 --~v~~~~g~~~~-----~--~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (227)
T 3tql_A 111 --IIGVQGGTTFD-----S--YLQDSFGNSITIQRYPSEEDALMDLTSGRVDAVVGDTPLIKQWLKQNGRREYVLIGKPV 181 (227)
T ss_dssp --EEEEETTSHHH-----H--HHHHHHGGGSEEEEESSHHHHHHHHTTTSSSEEESCHHHHHHHHHHTTCCSEEEEEEEC
T ss_pred --EEEEEecccHH-----H--HHHHhccccceEEEcCCHHHHHHHHHcCCcCEEEeChHHHHHHHHhCCCCCEEEecCcc
Confidence 22222111000 0 01111111023345778999999999999 899999999998887764 477776544
Q ss_pred CCc-----ceEEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhc
Q psy1412 452 DSK-----GYGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWW 491 (504)
Q Consensus 452 ~~~-----~~g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~ 491 (504)
... +++++++|++| +++.||++|.++.++|.+++|.+|||
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~ 227 (227)
T 3tql_A 182 NDPNYFGKGVGIAVKKGNQALLLKLNKALAAIKANGVYAAIVQKYF 227 (227)
T ss_dssp CCGGGCCSCBCCEEETTCHHHHHHHHHHHHHHHHTSHHHHHHHHHC
T ss_pred cCccccccceEEEEcCCCHHHHHHHHHHHHHHHhCChHHHHHHhhC
Confidence 443 45999999998 99999999999999999999999996
No 22
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.83 E-value=2.3e-20 Score=175.39 Aligned_cols=215 Identities=19% Similarity=0.298 Sum_probs=171.8
Q ss_pred cCCeEEEEEee-cccCeEEEecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhh
Q psy1412 133 TNNVTLIVMTR-EEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMD 211 (504)
Q Consensus 133 ~~~~~l~V~~~-~~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~ 211 (504)
...++|+|++. ..+||.+... ++.+.|+++||++++++++|++++++.. +|..++..|.+
T Consensus 8 ~~~~~l~v~~~~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~ 68 (234)
T 3h7m_A 8 DRHRTIVVGGDRDYPPYEFIDQ------NGKPAGYNVELTRAIAEVMGMTVEFRLG-------------AWSEMFSALKS 68 (234)
T ss_dssp CSSSCEEEEEETEETTTEEECT------TSCEESHHHHHHHHHHHHHTCCEEEEEE-------------CGGGHHHHHHT
T ss_pred CCCCEEEEEecCCCCCeEEECC------CCCEeeeEHHHHHHHHHHcCCceEEEeC-------------CHHHHHHHHhC
Confidence 35678999986 4589887654 3679999999999999999999999843 59999999999
Q ss_pred ccccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCC
Q psy1412 212 KKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPY 291 (504)
Q Consensus 212 g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~ 291 (504)
|++|++ ++++.+.+|.+.++||.||...+.++++++...
T Consensus 69 g~~D~~-~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~---------------------------------------- 107 (234)
T 3h7m_A 69 GRVDVL-QGISWSEKRARQIDFTPPHTIVYHAIFARRDSP---------------------------------------- 107 (234)
T ss_dssp TSSSEE-EEEECCHHHHTTEEEEEEEEEEEEEEEEESSSC----------------------------------------
T ss_pred CCeeEE-EeccCCHhHHhhcCCCccccccceEEEEECCCC----------------------------------------
Confidence 999994 789999999999999999999999999876432
Q ss_pred CccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhcc
Q psy1412 292 EWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLG 371 (504)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~ 371 (504)
.+++++||.
T Consensus 108 -----------------------------------------------------------------------~~~~~~dL~ 116 (234)
T 3h7m_A 108 -----------------------------------------------------------------------PAAGLEDLR 116 (234)
T ss_dssp -----------------------------------------------------------------------CCSSGGGGT
T ss_pred -----------------------------------------------------------------------CCCCHHHhC
Confidence 245567775
Q ss_pred CCCCceeeee----ecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcC--Ccc
Q psy1412 372 GQGDETFVTI----DLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRN--CNL 444 (504)
Q Consensus 372 ~~~~i~~g~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~--c~l 444 (504)
... +|+. ...++++.. .....+.+.+.++++++|.+|+ +|++.+...+.|++++. .++
T Consensus 117 g~~---i~~~~g~~~~~~l~~~~------------~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~ 181 (234)
T 3h7m_A 117 GRK---VALHRDGIMHEYLAERG------------YGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNL 181 (234)
T ss_dssp TSC---EEEETTSHHHHHHHTTT------------CGGGEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTCTTE
T ss_pred CCE---EEEEeCchHHHHHHhcC------------CCceEEEeCCHHHHHHHHHcCCceEEEeccHHHHHHHHhcCCCce
Confidence 432 2222 111111100 0012344678999999999999 89999999998888765 578
Q ss_pred EEcCCccCCcceEEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhccC
Q psy1412 445 TQIGGLLDSKGYGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWWKN 493 (504)
Q Consensus 445 ~~vg~~~~~~~~g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~~~ 493 (504)
..++..+...+++++++|++| +++.||++|.+|.++|.+++|.+||+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 231 (234)
T 3h7m_A 182 VPVARSIAAQRYGYAVRQGDAELLARFSEGLAILRKTGQYEAIRAKWLGV 231 (234)
T ss_dssp EEEEEEEEEEEEEEEEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHSTTC
T ss_pred EEeccccCCCceEEEEeCCCHHHHHHHHHHHHHHHHcCcHHHHHHHhccc
Confidence 888877888899999999997 9999999999999999999999999974
No 23
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.83 E-value=8.6e-20 Score=170.96 Aligned_cols=217 Identities=17% Similarity=0.238 Sum_probs=168.7
Q ss_pred cCCeEEEEEee-cccCeEEEecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhh
Q psy1412 133 TNNVTLIVMTR-EEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMD 211 (504)
Q Consensus 133 ~~~~~l~V~~~-~~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~ 211 (504)
...++|+|++. ..+||.+... ++.+.|+++|+++++++++|++++++.. +|+.++..|.+
T Consensus 3 ~~a~~l~v~~~~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~ 63 (229)
T 2y7i_A 3 VSARTLHFGTSATYAPYEFVDA------DNKIVGFDIDVANAVCKEMQAECSFTNQ-------------SFDSLIPSLRF 63 (229)
T ss_dssp CSCCEEEEEECCCBTTTBEECT------TSCEESHHHHHHHHHHHHTTCEEEEEEC-------------CGGGHHHHHHT
T ss_pred ccCCcEEEEeCCCcCCceEECC------CCCCcceeHHHHHHHHHHhCCeEEEEEc-------------CHHHHHHHHhC
Confidence 35678999997 5689887643 3678999999999999999999999853 58999999999
Q ss_pred ccccceecceeeecccceeeeeccceeec-cEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCC
Q psy1412 212 KKADLAVASMTINYARESVIDFTKPFMNL-GIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSP 290 (504)
Q Consensus 212 g~~D~av~~~tit~~R~~~vdFs~p~~~~-g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p 290 (504)
|++|+++++++.+.+|.+.++|+.||... ..++++++..
T Consensus 64 g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~---------------------------------------- 103 (229)
T 2y7i_A 64 KKFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGA---------------------------------------- 103 (229)
T ss_dssp TSCSEECSSCBCCHHHHTTSEECSCSBCCCCEEEEEETTS----------------------------------------
T ss_pred CCceEEEecCccCHHHhcceeeccccccCCcEEEEEeCCC----------------------------------------
Confidence 99999988899999999999999999999 9999987542
Q ss_pred CCccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhc
Q psy1412 291 YEWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFL 370 (504)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL 370 (504)
+++++||
T Consensus 104 -------------------------------------------------------------------------~~~~~dL 110 (229)
T 2y7i_A 104 -------------------------------------------------------------------------YHTFADL 110 (229)
T ss_dssp -------------------------------------------------------------------------CCSTGGG
T ss_pred -------------------------------------------------------------------------CCCHHHH
Confidence 3445666
Q ss_pred cCCCCceeeeeecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcCCccEEcCC
Q psy1412 371 GGQGDETFVTIDLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNCNLTQIGG 449 (504)
Q Consensus 371 ~~~~~i~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c~l~~vg~ 449 (504)
.+. ++|....... ..+ +.+.. .....+.+.+.++++++|.+|+ +|++.+...+.|++++..++..++.
T Consensus 111 ~g~---~v~~~~g~~~-----~~~--l~~~~-~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~ 179 (229)
T 2y7i_A 111 KGK---KVGLENGTTH-----QRY--LQDKQ-QAITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIMDE 179 (229)
T ss_dssp TTC---EEEEETTSHH-----HHH--HHHHC-TTSEEEEESCHHHHHHHHHTTSCSEEEEEHHHHHHHHTTCTTEEECSC
T ss_pred CCC---EEEEecCCcH-----HHH--HHHhC-CCCeEEecCCHHHHHHHHHcCCcCEEEechHHHHHHHHhCCCeEEecc
Confidence 533 2222210000 000 00000 0112344678999999999999 8999999999998887778888876
Q ss_pred ccC-----CcceEEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhcc
Q psy1412 450 LLD-----SKGYGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWWK 492 (504)
Q Consensus 450 ~~~-----~~~~g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~~ 492 (504)
.+. ..+++++++|++| +++.||++|.++.++|.+++|.+||+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 180 RASDPDYYGKGLGIAVRKDNDALLQEINAALDKVKASPEYAQMQEKWFT 228 (229)
T ss_dssp CBCCTTTSCCCBCCEECTTCHHHHHHHHHHHHHHHTSHHHHHHHHHHHC
T ss_pred ccccccccccceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 543 2478999999988 999999999999999999999999985
No 24
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.82 E-value=6.5e-20 Score=176.97 Aligned_cols=216 Identities=19% Similarity=0.305 Sum_probs=169.9
Q ss_pred ccCCeEEEEEeecc-cCeEEEecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHh
Q psy1412 132 STNNVTLIVMTREE-KPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELM 210 (504)
Q Consensus 132 ~~~~~~l~V~~~~~-~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~ 210 (504)
..+.++|+|++..+ +||.+..+ ++.+.|+++||++++++++|++++++.++ +|++++..|.
T Consensus 28 i~~~~~l~v~~~~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~lg~~~~~~~~~------------~~~~~~~~l~ 89 (267)
T 3mpk_A 28 MADHPVVKVAVLNLFAPFTLFRT------DEQFGGISAAVLQLLQLRTGLDFEIIGVD------------TVEELIAKLR 89 (267)
T ss_dssp HHHCSEEEEEEETEETTTEECCT------TCCCBSHHHHHHHHHHHHHCCEEEEEEES------------SHHHHHHHHH
T ss_pred HHhCCcEEEEeCCCCCCeEEECC------CCcEeeeHHHHHHHHHHHHCCeEEEEecC------------CHHHHHHHHH
Confidence 34578999999874 89887643 36799999999999999999999998653 5999999999
Q ss_pred hccccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCC
Q psy1412 211 DKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSP 290 (504)
Q Consensus 211 ~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p 290 (504)
+|++|++. +++.+.+|.+.++||.||+..+.++++++...
T Consensus 90 ~G~~D~~~-~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~--------------------------------------- 129 (267)
T 3mpk_A 90 SGEADMAG-ALFVNSARESFLSFSRPYVRNGMVIVTRQDPD--------------------------------------- 129 (267)
T ss_dssp HTSCSEEE-EEECCGGGTTTEEECSCSEEECEEEEEESSTT---------------------------------------
T ss_pred CCCccEEe-cccCChhhhcceEechhhccCceEEEEECCCC---------------------------------------
Confidence 99999965 89999999999999999999999999885421
Q ss_pred CCccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhc
Q psy1412 291 YEWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFL 370 (504)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL 370 (504)
.+++++||
T Consensus 130 ------------------------------------------------------------------------~i~~~~dL 137 (267)
T 3mpk_A 130 ------------------------------------------------------------------------APVDADHL 137 (267)
T ss_dssp ------------------------------------------------------------------------SCSSGGGC
T ss_pred ------------------------------------------------------------------------CCCCHHHH
Confidence 23556677
Q ss_pred cCCCCceeeee----ecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcC--Cc
Q psy1412 371 GGQGDETFVTI----DLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRN--CN 443 (504)
Q Consensus 371 ~~~~~i~~g~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~--c~ 443 (504)
.+. ++|.. ...+++ + .......+.+.+.++++++|.+|+ +|++.+...+.|++++. .+
T Consensus 138 ~g~---~i~v~~g~~~~~~l~-----------~-~~~~~~~~~~~~~~~~l~~L~~GrvDa~i~~~~~~~~~~~~~~~~~ 202 (267)
T 3mpk_A 138 DGR---TVALVRNSAAIPLLQ-----------R-RYPQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGK 202 (267)
T ss_dssp TTC---EEEEETTCTHHHHHH-----------H-HCTTSEEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTT
T ss_pred CCC---EEEEeCCchhHHHHH-----------H-hCCCcEEEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhcCCCc
Confidence 643 22322 111111 0 000122345778999999999999 89999999999888763 56
Q ss_pred cEEcCCcc-CCcceEEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhccC
Q psy1412 444 LTQIGGLL-DSKGYGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWWKN 493 (504)
Q Consensus 444 l~~vg~~~-~~~~~g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~~~ 493 (504)
+.+++... ...+++|+++|++| +++.||++|.+|.++| +++|.+||+..
T Consensus 203 l~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~~-~~~i~~kw~~~ 253 (267)
T 3mpk_A 203 LRIASALDLPPAEIALATTRGQTELMSILNKALYSISNDE-LASIISRWRGS 253 (267)
T ss_dssp EEEEEECSSCCEEEEEEEETTCHHHHHHHHHHHHTSCHHH-HHHHHHTTC--
T ss_pred eEEEeccCCCceeEEEEEcCCCHHHHHHHHHHHHhCCHHH-HHHHHHhhccC
Confidence 87777543 47789999999998 9999999999999996 99999999974
No 25
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.82 E-value=8.6e-20 Score=172.25 Aligned_cols=219 Identities=17% Similarity=0.204 Sum_probs=165.5
Q ss_pred CeEEEEEee-cccCeEEEecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhcc
Q psy1412 135 NVTLIVMTR-EEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKK 213 (504)
Q Consensus 135 ~~~l~V~~~-~~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~ 213 (504)
.++|+|++. ..+||.+..+ ++.+.|+++||++++++++|++++++.. +|++++..|.+|+
T Consensus 3 ~~~l~v~~~~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g~ 63 (239)
T 1lst_A 3 PQTVRIGTDTTYAPFSSKDA------KGEFIGFDIDLGNEMCKRMQVKCTWVAS-------------DFDALIPSLKAKK 63 (239)
T ss_dssp CSEEEEEECSCBTTTBEECT------TCCEESHHHHHHHHHHHHHTCEEEEEEC-------------CGGGHHHHHHTTS
T ss_pred cceEEEEECCCcCCeeEECC------CCCEeeEHHHHHHHHHHHHCCeEEEEeC-------------CHHHHHHHHhCCC
Confidence 568999984 4689887653 3679999999999999999999999853 6999999999999
Q ss_pred ccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q psy1412 214 ADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYEW 293 (504)
Q Consensus 214 ~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~~~ 293 (504)
+|+++++++.+.+|.+.++||.||+..+.++++++..+.
T Consensus 64 ~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~~----------------------------------------- 102 (239)
T 1lst_A 64 IDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPI----------------------------------------- 102 (239)
T ss_dssp CSEECSSCBCCHHHHHHCEECSCSBCCCEEEEEETTCCC-----------------------------------------
T ss_pred CCEEEECcCcCHHHhhceeecccceeCceEEEEeCCCCC-----------------------------------------
Confidence 999998899999999999999999999999999865321
Q ss_pred cCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhccCC
Q psy1412 294 SNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLGGQ 373 (504)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~~~ 373 (504)
. .+++||.+.
T Consensus 103 -----------------------------------------------------------------~-----~~~~dL~g~ 112 (239)
T 1lst_A 103 -----------------------------------------------------------------Q-----PTLESLKGK 112 (239)
T ss_dssp -----------------------------------------------------------------C-----SSHHHHTTC
T ss_pred -----------------------------------------------------------------C-----CCHHHhCCC
Confidence 0 245666543
Q ss_pred CCceeeeeecchhccchhHHHHHHHHHHH-hcCCCcccCChHHHHHhhhcCC-eEEEeecchhhh-hhhcC--CccEEcC
Q psy1412 374 GDETFVTIDLSQRADSKIEIYQKMWRYME-SKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDY-EVQRN--CNLTQIG 448 (504)
Q Consensus 374 ~~i~~g~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y-~~~~~--c~l~~vg 448 (504)
. +|....... .. .+.+... ..-..+.+.+.++++++|.+|+ +|++.+...+.+ +.++. +++..++
T Consensus 113 ~---v~~~~g~~~-----~~--~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (239)
T 1lst_A 113 H---VGVLQGSTQ-----EA--YANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAG 182 (239)
T ss_dssp E---EEEETTSHH-----HH--HHHHHTGGGTCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHTTTSGGGTTEEECS
T ss_pred E---EEEEcCccH-----HH--HHHHhcccCCCeEEEcCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhccCCCceEEec
Confidence 2 222200000 00 0111110 0112345678999999999999 899988887653 33333 5688777
Q ss_pred CccCCc-----ceEEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhccC
Q psy1412 449 GLLDSK-----GYGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWWKN 493 (504)
Q Consensus 449 ~~~~~~-----~~g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~~~ 493 (504)
..+... +++++++|++| +.+.||++|.+++++|.+++|.+||+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~l~~~G~~~~i~~k~~~~ 233 (239)
T 1lst_A 183 PSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDF 233 (239)
T ss_dssp SCBCCHHHHCSSBCCEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHTTCSS
T ss_pred cccccccccCcceEEEEeCCCHHHHHHHHHHHHHHHHCccHHHHHHHHcCC
Confidence 655443 78999999998 9999999999999999999999999974
No 26
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.82 E-value=4.2e-20 Score=177.39 Aligned_cols=219 Identities=19% Similarity=0.249 Sum_probs=171.4
Q ss_pred CCeEEEEEeec-ccCeEEEecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhc
Q psy1412 134 NNVTLIVMTRE-EKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDK 212 (504)
Q Consensus 134 ~~~~l~V~~~~-~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g 212 (504)
..++|+|++.. .+||.+... ++.+.||++|+++++++++|++++++.. +|++++..|.+|
T Consensus 27 ~~~~l~v~~~~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g 87 (259)
T 4dz1_A 27 EGRTLNVAVSPASPPMLFKSA------DGKLQGIDLELFSSYCQSRHCKLNITEY-------------AWDGMLGAVASG 87 (259)
T ss_dssp TTCEEEEEECCCBTTTBEECT------TCCEESHHHHHHHHHHHHHTCEEEEEEC-------------CHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCeEEECC------CCCEEEeHHHHHHHHHHHhCCeEEEEEc-------------CHHHHHHHHhCC
Confidence 45789999985 489887653 3689999999999999999999999853 699999999999
Q ss_pred cccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy1412 213 KADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYE 292 (504)
Q Consensus 213 ~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~~ 292 (504)
++|+++++++.+++|.+.++||.||+..+.+++++++..
T Consensus 88 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~----------------------------------------- 126 (259)
T 4dz1_A 88 QADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHK----------------------------------------- 126 (259)
T ss_dssp SSSEEEEEEECCHHHHTTEEECCCSEEEEEEEEEETTSC-----------------------------------------
T ss_pred CCCEEEECCcCCHHHhhccccccchhhCceEEEEEcCCC-----------------------------------------
Confidence 999999999999999999999999999999999986532
Q ss_pred ccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhccC
Q psy1412 293 WSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLGG 372 (504)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~~ 372 (504)
.+|++++||.+
T Consensus 127 ---------------------------------------------------------------------~~i~~~~dL~g 137 (259)
T 4dz1_A 127 ---------------------------------------------------------------------ITLNNLNELNK 137 (259)
T ss_dssp ---------------------------------------------------------------------CCCCSGGGGGG
T ss_pred ---------------------------------------------------------------------CCCCCHHHhCC
Confidence 12456777764
Q ss_pred CCC-ceeeeeecchhccchhHHHHHHHHHHHhc-----CCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcC-Ccc
Q psy1412 373 QGD-ETFVTIDLSQRADSKIEIYQKMWRYMESK-----RPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRN-CNL 444 (504)
Q Consensus 373 ~~~-i~~g~~~~~~~~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~-c~l 444 (504)
..- +.-|+....+++ +..... ...+.+.+.++++++|.+|+ +|++.+.+.+.++.++. .++
T Consensus 138 ~~v~v~~g~~~~~~l~-----------~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~ 206 (259)
T 4dz1_A 138 YSIGYPRGMAYSDLIK-----------NDLEPKGYYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPI 206 (259)
T ss_dssp SCEEEETTSTHHHHHH-----------HHTGGGTSCCGGGCEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTSCCCE
T ss_pred CEEEEeCCcHHHHHHH-----------HhcccccccccceeEecCCHHHHHHHHHcCCCCEEEecHHHHHHHhccCCCce
Confidence 321 111211111111 111110 12344678999999999999 89999998887776554 577
Q ss_pred EEcCCccCCcceEEEecCCCCCchHHHHHHHhhhccChhHHHHHhhccC
Q psy1412 445 TQIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKN 493 (504)
Q Consensus 445 ~~vg~~~~~~~~g~a~~k~Spl~~~in~ail~l~e~G~l~~l~~kw~~~ 493 (504)
..........+++|+++|++++++.||++|.+ ..+|.++++.++|.+.
T Consensus 207 ~~~~~~~~~~~~~~~~~k~~~l~~~ln~~l~~-~g~~~l~~~~~~~~~~ 254 (259)
T 4dz1_A 207 ESRYVFKNVDQLGIAFKKGSPVRDDFNLWLKE-QGPQKISGIVDSWMKH 254 (259)
T ss_dssp EEEEEEEEEEEEEEEEETTCHHHHHHHHHHHH-HCHHHHHHHHHHHTCC
T ss_pred EeecccCCCceEEEEEeCChHHHHHHHHHHHh-CCCeehHHHHHHHHhh
Confidence 77666667788999999999999999999999 9999999999999874
No 27
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.82 E-value=1.2e-19 Score=169.37 Aligned_cols=217 Identities=24% Similarity=0.427 Sum_probs=168.4
Q ss_pred CeEEEEEee-cccCeEEEecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhcc
Q psy1412 135 NVTLIVMTR-EEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKK 213 (504)
Q Consensus 135 ~~~l~V~~~-~~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~ 213 (504)
.++|+|++. ..+||.+..+ +.+.|+++|+++++++++|++++++.. +|..++..|.+|+
T Consensus 2 ~~~l~v~~~~~~~P~~~~~~-------g~~~G~~~dl~~~~~~~~g~~~~~~~~-------------~~~~~~~~l~~g~ 61 (226)
T 1wdn_A 2 DKKLVVATDTAFVPFEFKQG-------DLYVGFDVDLWAAIAKELKLDYELKPM-------------DFSGIIPALQTKN 61 (226)
T ss_dssp --CEEEEEESSBTTTBEEET-------TEEESHHHHHHHHHHHHHTCCEEEEEE-------------CGGGHHHHHHTTS
T ss_pred CceEEEEECCCCCCeeEecC-------CcEEEeeHHHHHHHHHHhCCEEEEEEC-------------CHHHHHHHHhCCC
Confidence 357999998 5689887642 578999999999999999999999853 5899999999999
Q ss_pred ccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q psy1412 214 ADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYEW 293 (504)
Q Consensus 214 ~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~~~ 293 (504)
+|+++++++++.+|.+.++|+.||.....++++++..+
T Consensus 62 ~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~------------------------------------------ 99 (226)
T 1wdn_A 62 VDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNN------------------------------------------ 99 (226)
T ss_dssp SSEEEEEEECCHHHHTTSEECSCCEEEEEEEEEETTCC------------------------------------------
T ss_pred CCEEEEcCcCCHHHhCccccccchhcCceEEEEeCCCC------------------------------------------
Confidence 99999889999999999999999999999999986431
Q ss_pred cCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhccCC
Q psy1412 294 SNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLGGQ 373 (504)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~~~ 373 (504)
.+++++||...
T Consensus 100 ---------------------------------------------------------------------~i~~~~dL~g~ 110 (226)
T 1wdn_A 100 ---------------------------------------------------------------------DVKSVKDLDGK 110 (226)
T ss_dssp ---------------------------------------------------------------------SCSSSTTTTTC
T ss_pred ---------------------------------------------------------------------CCCCHHHhCCC
Confidence 13455666543
Q ss_pred CCceeeeeecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcC--CccEEcCCc
Q psy1412 374 GDETFVTIDLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRN--CNLTQIGGL 450 (504)
Q Consensus 374 ~~i~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~--c~l~~vg~~ 450 (504)
++|...... +.............+.+.+.++++++|.+|+ +|++.+...+.++.++. +++..++..
T Consensus 111 ---~i~~~~g~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~ 179 (226)
T 1wdn_A 111 ---VVAVKSGTG--------SVDYAKANIKTKDLRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDS 179 (226)
T ss_dssp ---EEEEETTSH--------HHHHHHHHCCCSEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTTTTEEEEEEE
T ss_pred ---EEEEEcCCc--------HHHHHHHhCCCceEEEeCCHHHHHHHHHcCCcCEEEeCcHHHHHHHHhCCCCceEEecCC
Confidence 122221000 1110000000112234678899999999999 89999999988887765 578888776
Q ss_pred cCCcceEEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhccC
Q psy1412 451 LDSKGYGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWWKN 493 (504)
Q Consensus 451 ~~~~~~g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~~~ 493 (504)
+...+++++++|++| +.+.+|++|.++.++|.+++|.+||+..
T Consensus 180 ~~~~~~~~~~~k~~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~ 223 (226)
T 1wdn_A 180 LEAQQYGIAFPKGSDELRDKVNGALKTLRENGTYNEIYKKWFGT 223 (226)
T ss_dssp EEEEEEEEEECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHSS
T ss_pred cccCceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 777789999999985 9999999999999999999999999975
No 28
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.81 E-value=9.2e-20 Score=176.34 Aligned_cols=220 Identities=15% Similarity=0.246 Sum_probs=167.6
Q ss_pred cCCeEEEEEee-cccCeEEEecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhh
Q psy1412 133 TNNVTLIVMTR-EEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMD 211 (504)
Q Consensus 133 ~~~~~l~V~~~-~~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~ 211 (504)
.+.++|+|++. ..+||.+..++ ++.+.+.||++|+++++++++|++++++.. +|++++..|.+
T Consensus 18 ~~~~~l~v~~~~~~pP~~~~~~~---~~~g~~~G~~~dl~~~i~~~~g~~v~~~~~-------------~~~~~~~~l~~ 81 (271)
T 2iee_A 18 KDKGKIVVATSGTLYPTSYHDTD---SGSDKLTGYEVEVVREAAKRLGLKVEFKEM-------------GIDGMLTAVNS 81 (271)
T ss_dssp HHHTEEEEEECSCBTTTBEEETT---TTCCEEECHHHHHHHHHHHHTTCEEEEEEC-------------CSTTHHHHHHH
T ss_pred ccCCeEEEEECCCCCCeeEeCCC---CCCCCceeeHHHHHHHHHHHcCCeEEEEEC-------------CHHHHHHHHHC
Confidence 45678999997 56899876432 122688999999999999999999999854 58999999999
Q ss_pred ccccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCC
Q psy1412 212 KKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPY 291 (504)
Q Consensus 212 g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~ 291 (504)
|++|+++++++++++|.+.++||.||...+.++++++...
T Consensus 82 G~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~---------------------------------------- 121 (271)
T 2iee_A 82 GQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDL---------------------------------------- 121 (271)
T ss_dssp TSSSEECSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTG----------------------------------------
T ss_pred CCcCEEEeCCcCChhhccceEEeecceeCCeEEEEECCCC----------------------------------------
Confidence 9999999889999999999999999999999999875421
Q ss_pred CccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhcc
Q psy1412 292 EWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLG 371 (504)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~ 371 (504)
.+|++++||.
T Consensus 122 ----------------------------------------------------------------------~~i~~~~dL~ 131 (271)
T 2iee_A 122 ----------------------------------------------------------------------SGIKTLKDLK 131 (271)
T ss_dssp ----------------------------------------------------------------------GGCSSGGGGT
T ss_pred ----------------------------------------------------------------------CCCCCHHHhC
Confidence 1245677775
Q ss_pred CCCCceeeeeecchhccchhHHHHHHHHHHHhcCCCcccCChHHH--HHhhhcCC-eEEEeecchhhhhhh-cC--CccE
Q psy1412 372 GQGDETFVTIDLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEG--VKRVLEGD-YAFLMESTMLDYEVQ-RN--CNLT 445 (504)
Q Consensus 372 ~~~~i~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~eg--i~~v~~g~-~A~i~e~~~~~y~~~-~~--c~l~ 445 (504)
.. ++|..... .+....+.. ....+.+.+.+++ +++|.+|+ + ++.+.....++.. +. .++.
T Consensus 132 g~---~i~v~~g~--------~~~~~l~~~--~~~~~~~~~~~~~~l~~~L~~GrvD-~i~~~~~~~~~~~~~~~~~~~~ 197 (271)
T 2iee_A 132 GK---KAAGAATT--------VYMEVARKY--GAKEVIYDNATNEQYLKDVANGRTD-VILNDYYLQTLALAAFPDLNIT 197 (271)
T ss_dssp TC---EEESCTTS--------HHHHHHHHT--TCEEEECSSCCHHHHHHHHHHTSSC-EEEEEHHHHHHHHHHCTTSSCE
T ss_pred CC---EEEEeCCc--------cHHHHHHHc--CCceEEeCChhhHHHHHHHHcCCcc-EEeccHHHHHHHHHhCCCCceE
Confidence 43 22322100 011000000 0123446778888 99999999 8 6666666655544 43 4688
Q ss_pred Ec-CCccCCcceEEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhcc
Q psy1412 446 QI-GGLLDSKGYGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWWK 492 (504)
Q Consensus 446 ~v-g~~~~~~~~g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~~ 492 (504)
.+ +..+...+++++++|++| +++.||++|.+|+++|.+++|.+||+.
T Consensus 198 ~~~~~~~~~~~~~~~~~k~~~~l~~~ln~al~~l~~~G~~~~i~~k~~~ 246 (271)
T 2iee_A 198 IHPDIKYMPNKQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFN 246 (271)
T ss_dssp ECSSCCEEEEEECCEEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred EecCCCcccceEEEEEcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHhCC
Confidence 77 667777889999999987 999999999999999999999999998
No 29
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.80 E-value=4.9e-19 Score=169.94 Aligned_cols=215 Identities=20% Similarity=0.227 Sum_probs=171.0
Q ss_pred CCeEEEEEeec-ccCeEEEecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhc
Q psy1412 134 NNVTLIVMTRE-EKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDK 212 (504)
Q Consensus 134 ~~~~l~V~~~~-~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g 212 (504)
..++++|++.. .+||.+... ++.+.|+++|+++++++++|++++++.. +|.+++..|.+|
T Consensus 29 ~~~~l~v~~~~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~~~~~~~~-------------~~~~~~~~l~~g 89 (268)
T 3qax_A 29 RNRIWIVGTNATYPPFEYVDA------QGEVVGFDIDLAKAISEKLGKQLEVREF-------------AFDALILNLKKH 89 (268)
T ss_dssp --CEEEEEECSCBTTTBEECT------TSCEESHHHHHHHHHHHHHTCEEEEEEC-------------CGGGHHHHHHHT
T ss_pred cCCeEEEEECCCCCCceEECC------CCCEEEEEHHHHHHHHHHhCCeEEEEec-------------CHHHHHHHHhCC
Confidence 45689999975 488887644 3688999999999999999999998843 689999999999
Q ss_pred cccceecceeeecccceeeeecccee--eccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCC
Q psy1412 213 KADLAVASMTINYARESVIDFTKPFM--NLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSP 290 (504)
Q Consensus 213 ~~D~av~~~tit~~R~~~vdFs~p~~--~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p 290 (504)
++|+++++++.+.+|.+.++| .||. ..+.++++++..
T Consensus 90 ~~D~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~---------------------------------------- 128 (268)
T 3qax_A 90 RIDAILAGMSITPSRQKEIAL-LPYYGDEVQELMVVSKRS---------------------------------------- 128 (268)
T ss_dssp SSSEECSCCBCCHHHHTTSEE-EEEECCCBCEEEEEEETT----------------------------------------
T ss_pred CccEEeecCccCHhHhcceee-ecceecccceEEEEECCC----------------------------------------
Confidence 999999899999999999999 9999 999999987642
Q ss_pred CCccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhc
Q psy1412 291 YEWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFL 370 (504)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL 370 (504)
.++++++||
T Consensus 129 -----------------------------------------------------------------------~~i~~~~dL 137 (268)
T 3qax_A 129 -----------------------------------------------------------------------LETPVLPLT 137 (268)
T ss_dssp -----------------------------------------------------------------------SCSCCCCGG
T ss_pred -----------------------------------------------------------------------CCCCCHHHh
Confidence 124556667
Q ss_pred cCCCCcee--eeeecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcCCccEEc
Q psy1412 371 GGQGDETF--VTIDLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNCNLTQI 447 (504)
Q Consensus 371 ~~~~~i~~--g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c~l~~v 447 (504)
.+.. |.. |+....++.. ......+.+.+.+++++++.+|+ +|++.+...+.++.++..++..+
T Consensus 138 ~g~~-i~~~~g~~~~~~l~~-------------~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~ 203 (268)
T 3qax_A 138 QYSS-VAVQTGTYQEHYLLS-------------QPGICVRSFDSTLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPNLVAT 203 (268)
T ss_dssp GSSC-EEEETTSHHHHHHHT-------------STTCCEEEESCHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEE
T ss_pred CCCE-EEEecCcHHHHHHHh-------------CCCceEEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCcEEe
Confidence 6442 111 1111111111 00122344678999999999999 89999999999998887778888
Q ss_pred CCccCCcc----eEEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhccC
Q psy1412 448 GGLLDSKG----YGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWWKN 493 (504)
Q Consensus 448 g~~~~~~~----~g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~~~ 493 (504)
+..+...+ ++++++|++| +++.||++|.++.++|.+++|.+||+..
T Consensus 204 ~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 254 (268)
T 3qax_A 204 RLELPPECWVLGCGLGVAKDRPEEIQTIQQAITDLKSEGVIQSLTKKWQLS 254 (268)
T ss_dssp EEECCGGGCBCCEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred cCccCcccccccEEEEEeCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCC
Confidence 77777777 9999999997 9999999999999999999999999875
No 30
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.80 E-value=1.6e-19 Score=172.69 Aligned_cols=219 Identities=15% Similarity=0.234 Sum_probs=166.5
Q ss_pred CCeEEEEEeecccCeEEEecCCCCCCCccceehhHHHHHHHHHHcCce-EEEEEcCCCCCccccCCCCcchhhHHHHhhc
Q psy1412 134 NNVTLIVMTREEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFH-FVLRLVPDHTYGVYDHETKEWNGIVKELMDK 212 (504)
Q Consensus 134 ~~~~l~V~~~~~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~-~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g 212 (504)
..++|+|++...+||.+..+ ++.+.|+++||++++++++|++ ++++.. +|++++..|.+|
T Consensus 11 ~~~~l~v~~~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~g~~~~~~~~~-------------~~~~~~~~l~~g 71 (257)
T 2q88_A 11 EQGFARIAIANEPPFTAVGA------DGKVSGAAPDVAREIFKRLGVADVVASIS-------------EYGAMIPGLQAG 71 (257)
T ss_dssp HHTEEEEEECCCTTTCEECT------TCCEESHHHHHHHHHHHHTTCCEEEEEEC-------------CGGGHHHHHHTT
T ss_pred cCCeEEEEcCCCCCeeEECC------CCCcccccHHHHHHHHHHcCCCeeeEEeC-------------CHHHHHHHHHCC
Confidence 45789999997799987643 3689999999999999999998 888743 599999999999
Q ss_pred cccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy1412 213 KADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYE 292 (504)
Q Consensus 213 ~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~~ 292 (504)
++|+++++++.+.+|.+.++||.||...+.++++++..+.
T Consensus 72 ~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~---------------------------------------- 111 (257)
T 2q88_A 72 RHDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPL---------------------------------------- 111 (257)
T ss_dssp SCSEECSCCBCCHHHHTTSEECSCCCEECEEEEEETTCTT----------------------------------------
T ss_pred CcCEEEecccCCHHHHhccccccchhcCceEEEEECCCcc----------------------------------------
Confidence 9999988899999999999999999999999999865310
Q ss_pred ccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhccC
Q psy1412 293 WSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLGG 372 (504)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~~ 372 (504)
.+++++||.+
T Consensus 112 ----------------------------------------------------------------------~i~~~~dL~~ 121 (257)
T 2q88_A 112 ----------------------------------------------------------------------GLKSYKDIAD 121 (257)
T ss_dssp ----------------------------------------------------------------------CCCBHHHHHH
T ss_pred ----------------------------------------------------------------------CCCCHHHHhc
Confidence 2456677762
Q ss_pred CCCceeeee----ecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcCC--ccE
Q psy1412 373 QGDETFVTI----DLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNC--NLT 445 (504)
Q Consensus 373 ~~~i~~g~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c--~l~ 445 (504)
+...++|.. ...+++....+ ....+.+.+.++++++|.+|+ +|++.+...+.|++++.. .+.
T Consensus 122 ~~g~~i~~~~g~~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~l~~grvDa~i~~~~~~~~~~~~~~~~~~~ 190 (257)
T 2q88_A 122 NPDAKIGAPGGGTEEKLALEAGVP-----------RDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVE 190 (257)
T ss_dssp CTTCCEEECTTSHHHHHHHHTTCC-----------GGGEEECSSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCCTTEE
T ss_pred cCCceEEEECCcccHHHHHhcCCC-----------CceEEEcCCHHHHHHHHHcCCCcEEEcCHHHHHHHHHhCCCccee
Confidence 211122322 11111110000 012345678999999999999 899999999988876653 455
Q ss_pred EcCCccC--CcceEEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhcc
Q psy1412 446 QIGGLLD--SKGYGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWWK 492 (504)
Q Consensus 446 ~vg~~~~--~~~~g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~~ 492 (504)
.+++... ..+++++++|+++ +++.||++|.++.++|.+++|.+||.-
T Consensus 191 ~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~~~~~g~~~~i~~k~~~ 240 (257)
T 2q88_A 191 VLAPVEGAPVYCDGAAFRKGDEALRDAFDVELAKLKESGEFAKIIEPYGF 240 (257)
T ss_dssp EECSCBTCCCEEBCCEECGGGHHHHHHHHHHHHHHHHHTHHHHHHGGGTC
T ss_pred eecccCCccccceEEEEcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhCC
Confidence 5443221 3567889999976 999999999999999999999999943
No 31
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.80 E-value=1.4e-18 Score=169.15 Aligned_cols=223 Identities=21% Similarity=0.310 Sum_probs=170.4
Q ss_pred CCeEEEEEeec-ccCeEEEecCCCCCCCccceehhHHHHHHHHHH----cC---ceEEEEEcCCCCCccccCCCCcchhh
Q psy1412 134 NNVTLIVMTRE-EKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQ----VG---FHFVLRLVPDHTYGVYDHETKEWNGI 205 (504)
Q Consensus 134 ~~~~l~V~~~~-~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~----l~---f~~~~~~~~~~~~G~~~~~~g~w~gl 205 (504)
..++|+|++.. .+||.+... ++.+.|+++|+++++++. +| ++++++.. .|..+
T Consensus 15 ~~~~l~v~~~~~~~P~~~~~~------~g~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~~-------------~~~~~ 75 (287)
T 2vha_A 15 KNGVIVVGHRESSVPFSYYDN------QQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPI-------------TSQNR 75 (287)
T ss_dssp HHTEEEEEECSEETTTEEECS------SSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEEC-------------CTTTH
T ss_pred hCCeEEEEEcCCCCCceEECC------CCCcccccHHHHHHHHHHHHHhcCCCCceEEEEEC-------------CHHHH
Confidence 45789999974 689887653 367899999999999976 56 78887743 57889
Q ss_pred HHHHhhccccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHH
Q psy1412 206 VKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVM 285 (504)
Q Consensus 206 i~~l~~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i 285 (504)
+..|.+|++|+++++++.+.+|.+.++||.||+..+.++++++..
T Consensus 76 ~~~l~~g~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~----------------------------------- 120 (287)
T 2vha_A 76 IPLLQNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG----------------------------------- 120 (287)
T ss_dssp HHHHHTTSCSEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS-----------------------------------
T ss_pred HHHHHCCCeeEEeccccCCcchhhcccccceeeecceEEEEECCC-----------------------------------
Confidence 999999999999988999999999999999999999999987542
Q ss_pred HhhCCCCccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccch
Q psy1412 286 ARFSPYEWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKK 365 (504)
Q Consensus 286 ~r~~p~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~ 365 (504)
+|+
T Consensus 121 -----------------------------------------------------------------------------~i~ 123 (287)
T 2vha_A 121 -----------------------------------------------------------------------------DIK 123 (287)
T ss_dssp -----------------------------------------------------------------------------SCC
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 245
Q ss_pred hhhhccCCCCceeeeeecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcC---
Q psy1412 366 CILFLGGQGDETFVTIDLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRN--- 441 (504)
Q Consensus 366 s~~dL~~~~~i~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~--- 441 (504)
+++||... ++|........ ................+.+.+.++++++|.+|+ +|++.+...+.++.++.
T Consensus 124 sl~dL~g~---~v~~~~g~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~i~~~~~~~~~~~~~~~~ 196 (287)
T 2vha_A 124 DFADLKGK---AVVVTSGTTSE----VLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKP 196 (287)
T ss_dssp SGGGGTTC---EEEEETTSHHH----HHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSG
T ss_pred CHHHcCCC---EEEEeCCCcHH----HHHHHHhhccCCCceEEEcCCHHHHHHHHHcCCeeEEEeChHHHHHHHHhCCCC
Confidence 56677543 22322100000 001111100000112345678999999999999 89999999888887764
Q ss_pred CccEEcCCccCCcceEEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhccCC
Q psy1412 442 CNLTQIGGLLDSKGYGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWWKNT 494 (504)
Q Consensus 442 c~l~~vg~~~~~~~~g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~~~~ 494 (504)
+++..++..+...+++++++|++| +++.||++|.++.++|.+++|.+||+...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 250 (287)
T 2vha_A 197 DNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKNP 250 (287)
T ss_dssp GGEEEESCCSCEEEEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHSC
T ss_pred CceEecCCccccCceEEEEeCCCHHHHHHHHHHHHHHHhCchHHHHHHHHcCCC
Confidence 478888877788899999999987 99999999999999999999999999853
No 32
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.78 E-value=1.2e-18 Score=169.84 Aligned_cols=216 Identities=18% Similarity=0.256 Sum_probs=170.0
Q ss_pred CCeEEEEEeec-ccCeEEEecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhc
Q psy1412 134 NNVTLIVMTRE-EKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDK 212 (504)
Q Consensus 134 ~~~~l~V~~~~-~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g 212 (504)
..++|+|++.. .+||.+... ++.+.|+.+|+++++++++|++++++.. .|..++..|.+|
T Consensus 55 ~~~~l~v~~~~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~G~~v~~~~~-------------~~~~~~~~l~~G 115 (283)
T 2yln_A 55 NKGTVTVGTEGTYAPFTYHDK------DGKLTGYDVEVTRAVAEKLGVKVEFKET-------------QWDSMMAGLKAG 115 (283)
T ss_dssp HTCEEEEEECSEETTTEEECT------TSCEESHHHHHHHHHHHHHTCEEEEEEC-------------CGGGHHHHHHHT
T ss_pred cCCeEEEEECCCCCCeeEECC------CCCEeeehHHHHHHHHHHcCCceEEEEC-------------CHHHHHHHHHCC
Confidence 45789999977 688887653 3678999999999999999999999854 489999999999
Q ss_pred cccceecceee-ecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCC
Q psy1412 213 KADLAVASMTI-NYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPY 291 (504)
Q Consensus 213 ~~D~av~~~ti-t~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~ 291 (504)
++|++++.+++ +.+|.+.++|+.||...+.++++++..
T Consensus 116 ~~D~~~~~~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~----------------------------------------- 154 (283)
T 2yln_A 116 RFDVVANQVGLTSPERQATFDKSEPYSWSGAVLVAHNDS----------------------------------------- 154 (283)
T ss_dssp SCSEECSSCCCCSHHHHHHEEECSCSEEECEEEEEETTC-----------------------------------------
T ss_pred CcCEEEecCccCChhhhcceEeccCeeeecEEEEEECCC-----------------------------------------
Confidence 99999988888 999999999999999999999987542
Q ss_pred CccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhcc
Q psy1412 292 EWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLG 371 (504)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~ 371 (504)
+|++++||.
T Consensus 155 -----------------------------------------------------------------------~i~s~~dL~ 163 (283)
T 2yln_A 155 -----------------------------------------------------------------------NIKSIADIK 163 (283)
T ss_dssp -----------------------------------------------------------------------SCCSGGGCT
T ss_pred -----------------------------------------------------------------------CCCCHHHhC
Confidence 145566774
Q ss_pred CCCCceeeeeecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcCC--ccEEcC
Q psy1412 372 GQGDETFVTIDLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNC--NLTQIG 448 (504)
Q Consensus 372 ~~~~i~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c--~l~~vg 448 (504)
.. ++|..... .+....+.. .-..+.+.+..+++++|.+|+ +|++.+.+.+.+++++.. ++.+++
T Consensus 164 G~---~v~v~~g~--------~~~~~l~~~--~~~~~~~~~~~~~~~~l~~g~vDa~i~~~~~~~~~~~~~~~~~l~~~~ 230 (283)
T 2yln_A 164 GV---KTAQSLTS--------NYGEKAKAA--GAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVW 230 (283)
T ss_dssp TS---EEEECTTS--------HHHHHHHHT--TCEEEECSSHHHHHHHHHTTSCCEEEEEHHHHHHHHHHSTTSSEEEEE
T ss_pred CC---EEEEecCc--------hHHHHHHHc--CCeEEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEcc
Confidence 32 22222000 011111100 112234568899999999999 899999999888877653 488887
Q ss_pred -CccC-CcceEEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhccC
Q psy1412 449 -GLLD-SKGYGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWWKN 493 (504)
Q Consensus 449 -~~~~-~~~~g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~~~ 493 (504)
..+. ..+++|+++|++| +++.||++|.+++++|.+++|.+||+..
T Consensus 231 ~~~~~~~~~~~i~~~k~~~~l~~~i~~al~~l~~~g~~~~i~~k~~~~ 278 (283)
T 2yln_A 231 SAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGK 278 (283)
T ss_dssp ECCGGGCEEECCEEESSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred CcccCCcccEEEEEeCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCC
Confidence 6677 7889999999987 8999999999999999999999999975
No 33
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.77 E-value=1.8e-18 Score=166.05 Aligned_cols=223 Identities=20% Similarity=0.283 Sum_probs=171.1
Q ss_pred CCeEEEEEeec-ccCeEEEecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhc
Q psy1412 134 NNVTLIVMTRE-EKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDK 212 (504)
Q Consensus 134 ~~~~l~V~~~~-~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g 212 (504)
..++++|++.. .+||.+.... .+++.+.|+++|+++++++++|++++++.. +|..++..|.+|
T Consensus 37 ~~~~l~v~~~~~~~P~~~~~~~---~~~g~~~G~~~dl~~~~~~~~g~~~~~~~~-------------~~~~~~~~l~~g 100 (269)
T 4i62_A 37 SKGKLVVALNPDFAPFEYQKVV---DGKNQIVGSDIELAKAIATELGVELELSPM-------------SFDNVLASVQSG 100 (269)
T ss_dssp HHTEEEEEECSCBTTTBEEEEE---TTEEEEESHHHHHHHHHHHHHTCEEEEEEC-------------CHHHHHHHHHTT
T ss_pred cCCeEEEEecCCCCCceeeccc---CCCCcEeeecHHHHHHHHHHHCCceEEEEc-------------CHHHHHHHHhCC
Confidence 34689999975 5888772110 124789999999999999999999999853 699999999999
Q ss_pred cccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy1412 213 KADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSPYE 292 (504)
Q Consensus 213 ~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p~~ 292 (504)
++|+++++++.+.+|.+.+.|+.||...+.++++++...
T Consensus 101 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~----------------------------------------- 139 (269)
T 4i62_A 101 KADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDL----------------------------------------- 139 (269)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCCEECCEEEEEEGGGT-----------------------------------------
T ss_pred CccEEecCCcCCHhHhhceecccchhhcceEEEEECCcc-----------------------------------------
Confidence 999999999999999999999999999999999986521
Q ss_pred ccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhccC
Q psy1412 293 WSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFLGG 372 (504)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL~~ 372 (504)
.+|++++||.+
T Consensus 140 ---------------------------------------------------------------------~~i~~~~dL~g 150 (269)
T 4i62_A 140 ---------------------------------------------------------------------ATYQSVNDLAQ 150 (269)
T ss_dssp ---------------------------------------------------------------------TTCSSGGGGC-
T ss_pred ---------------------------------------------------------------------ccccCHHHhCC
Confidence 13566777764
Q ss_pred CCCceeeeeecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcCCccEEcCCcc
Q psy1412 373 QGDETFVTIDLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNCNLTQIGGLL 451 (504)
Q Consensus 373 ~~~i~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c~l~~vg~~~ 451 (504)
. ++|..... .+.............+.+.+.+++++++.+|+ +|++.+.+.+.++.+++.++......+
T Consensus 151 ~---~i~~~~g~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (269)
T 4i62_A 151 K---KVGAQKGS--------IQETMAKDLLQNSSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDLAIADLNF 219 (269)
T ss_dssp C---EEEEETTS--------HHHHHHHHHCTTSEEEEESCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEECSCCC
T ss_pred C---eEEEecCc--------hHHHHHHHhCCCCcEEecCCHHHHHHHHHcCCCCEEEeChHHHHHHHHhCCCCeEEeecc
Confidence 3 22322100 01111111101122345678999999999999 899999999988888777766665444
Q ss_pred C---CcceEEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhccC
Q psy1412 452 D---SKGYGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWWKN 493 (504)
Q Consensus 452 ~---~~~~g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~~~ 493 (504)
. ..+++++++|++| +.+.||++|.+++++|.+++|.+||+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 265 (269)
T 4i62_A 220 EKEQDDSYAVAMKKDSKELKEAVDKTIQKLKESGELDKLIEDAFKA 265 (269)
T ss_dssp CC-CCCEECCEEESSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCCcccceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHhCC
Confidence 3 6788999999997 9999999999999999999999999974
No 34
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.77 E-value=4.8e-18 Score=164.12 Aligned_cols=220 Identities=20% Similarity=0.352 Sum_probs=170.3
Q ss_pred ccCCeEEEEEee-cccCeEEEecCCCCCCCccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHh
Q psy1412 132 STNNVTLIVMTR-EEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELM 210 (504)
Q Consensus 132 ~~~~~~l~V~~~-~~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~ 210 (504)
....++|+|++. ..+||.+.+ ++.+.|+.+|+++++++++|++++++.. .|..++..|.
T Consensus 38 ~~~~~~l~v~~~~~~~P~~~~~-------~g~~~G~~~dl~~~i~~~~g~~v~~~~~-------------~~~~~~~~l~ 97 (272)
T 2pvu_A 38 GATKKKVVVGTDAAFAPFEYMQ-------KGKIVGFDVDLLDAVMKAAGLDYELKNI-------------GWDPLFASLQ 97 (272)
T ss_dssp CCCCCCEEEEECCCBTTTBEEE-------TTEEESHHHHHHHHHHHHHTCCEEEEEC-------------CHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCeEEec-------CCeEEEEHHHHHHHHHHHhCCceEEEEC-------------CHHHHHHHHh
Confidence 345678999997 568988763 2678999999999999999999998853 4999999999
Q ss_pred hccccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCC
Q psy1412 211 DKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSP 290 (504)
Q Consensus 211 ~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p 290 (504)
+|++|+++++++.+.+|.+.++|+.||.....++++++..
T Consensus 98 ~G~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~---------------------------------------- 137 (272)
T 2pvu_A 98 SKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGS---------------------------------------- 137 (272)
T ss_dssp HTSSSEECSSCBCCHHHHTTEEECSCCEEECEEEEEETTC----------------------------------------
T ss_pred CCCCCEEEeCCcCCHHHHhcCccchhhhccceEEEEECCC----------------------------------------
Confidence 9999999988899999999999999999999999987542
Q ss_pred CCccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhc
Q psy1412 291 YEWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFL 370 (504)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL 370 (504)
++++++||
T Consensus 138 ------------------------------------------------------------------------~i~~~~dL 145 (272)
T 2pvu_A 138 ------------------------------------------------------------------------PVKNALDL 145 (272)
T ss_dssp ------------------------------------------------------------------------CCCSGGGG
T ss_pred ------------------------------------------------------------------------CCCCHHHh
Confidence 13556677
Q ss_pred cCCCCceeeeeecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcCC--ccEEc
Q psy1412 371 GGQGDETFVTIDLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNC--NLTQI 447 (504)
Q Consensus 371 ~~~~~i~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c--~l~~v 447 (504)
.... +|....... .. .+.+........+.+.+.++++++|.+|+ +|++.+...+.++.++.. ++..+
T Consensus 146 ~g~~---i~~~~g~~~-----~~--~l~~~~~~~~~i~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~l~~~ 215 (272)
T 2pvu_A 146 KGKT---IGVQNATTG-----QE--AAEKLFGKGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVI 215 (272)
T ss_dssp TTSC---EEEETTSHH-----HH--HHHHHHCSSTTEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEEE
T ss_pred CCCe---EEEEcCchH-----HH--HHHHhcCCCCeEEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCceEEe
Confidence 5432 222210000 00 01111110122345678999999999999 899999999988877663 48887
Q ss_pred CCcc--CCcceEEEecCCCCCchHHHHHHHhhhccChhHHHHHhhccC
Q psy1412 448 GGLL--DSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKN 493 (504)
Q Consensus 448 g~~~--~~~~~g~a~~k~Spl~~~in~ail~l~e~G~l~~l~~kw~~~ 493 (504)
+... ...+++++++|+..+++.||++|.++.++|.+++|.+||+..
T Consensus 216 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 263 (272)
T 2pvu_A 216 EDPKNFASEYYGMIFPKNSELKAKVDEALKNVINSGKYTEIYKKWFGK 263 (272)
T ss_dssp CCTTTSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred ccccccCCceEEEEEeCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 7653 667899999999559999999999999999999999999874
No 35
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.76 E-value=2.1e-18 Score=168.55 Aligned_cols=217 Identities=19% Similarity=0.214 Sum_probs=169.7
Q ss_pred CeEEEEEee-cccCeEEEecCCCCCCCccceehhHHHHHHHHHHc---CceEEEEEcCCCCCccccCCCCcchhhHHHHh
Q psy1412 135 NVTLIVMTR-EEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQV---GFHFVLRLVPDHTYGVYDHETKEWNGIVKELM 210 (504)
Q Consensus 135 ~~~l~V~~~-~~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l---~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~ 210 (504)
.++|+|++. ..+||.+..+ ++.+.|+++|+++++++++ |++++++.. .|+.++..|.
T Consensus 43 ~~~l~v~~~~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~~~~g~~~~~~~~-------------~~~~~~~~l~ 103 (292)
T 1xt8_A 43 NGVVRIGVFGDKPPFGYVDE------KGNNQGYDIALAKRIAKELFGDENKVQFVLV-------------EAANRVEFLK 103 (292)
T ss_dssp HSSEEEEECSEETTTEEECT------TSCEESHHHHHHHHHHHHHHSCTTCEEEEEC-------------CGGGHHHHHH
T ss_pred CCeEEEEECCCCCCeeEECC------CCCEeeEhHHHHHHHHHHhccCCceEEEEEc-------------CHHHHHHHHh
Confidence 456999985 4588887653 3678999999999999999 999999854 4889999999
Q ss_pred hccccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCC
Q psy1412 211 DKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSP 290 (504)
Q Consensus 211 ~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p 290 (504)
+|++|+++++++.+.+|.+.++|+.||...+.++++++..
T Consensus 104 ~G~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~---------------------------------------- 143 (292)
T 1xt8_A 104 SNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDS---------------------------------------- 143 (292)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECCCCEEEEEEEEEETTC----------------------------------------
T ss_pred CCCeeEEeecCCCCcchhcceeeeccceecceEEEEECCC----------------------------------------
Confidence 9999999888889999999999999999999999987542
Q ss_pred CCccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhc
Q psy1412 291 YEWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFL 370 (504)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL 370 (504)
++++++||
T Consensus 144 ------------------------------------------------------------------------~i~~~~dL 151 (292)
T 1xt8_A 144 ------------------------------------------------------------------------NITSVEDL 151 (292)
T ss_dssp ------------------------------------------------------------------------CCCSSGGG
T ss_pred ------------------------------------------------------------------------CCCCHHHh
Confidence 23556666
Q ss_pred cCCCCceeeeeecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcCCccEEcCC
Q psy1412 371 GGQGDETFVTIDLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNCNLTQIGG 449 (504)
Q Consensus 371 ~~~~~i~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c~l~~vg~ 449 (504)
.+. ++|..... .+.............+.+.+.+++++++.+|+ +|++.+...+.++.++..++..++.
T Consensus 152 ~g~---~i~~~~g~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~~~~~~~~~~~~~~~~~l~~~~~ 220 (292)
T 1xt8_A 152 KDK---TLLLNKGT--------TADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIK 220 (292)
T ss_dssp TTS---EEEEETTS--------HHHHHHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEEE
T ss_pred CCC---EEEEeCCC--------cHHHHHHHhCCCceEEEcCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEEccc
Confidence 533 22222100 00000000001112244678899999999999 8999999999988887767888776
Q ss_pred ccCCcce-EEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhccC
Q psy1412 450 LLDSKGY-GIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWWKN 493 (504)
Q Consensus 450 ~~~~~~~-g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~~~ 493 (504)
.+...++ +++++|++| +++.||++|.++.++|.+++|.+||+..
T Consensus 221 ~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 266 (292)
T 1xt8_A 221 ELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKA 266 (292)
T ss_dssp EEEEEEEECCEEETTCHHHHHHHHHHHHHHHTTTHHHHHHHHHTGG
T ss_pred ccccCceeEEEEeCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhcCC
Confidence 6777788 999999988 9999999999999999999999999874
No 36
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.76 E-value=1.5e-18 Score=169.63 Aligned_cols=217 Identities=18% Similarity=0.234 Sum_probs=171.1
Q ss_pred CeEEEEEee-cccCeEEEecCCCCCCCccceehhHHHHHHHHHHc---CceEEEEEcCCCCCccccCCCCcchhhHHHHh
Q psy1412 135 NVTLIVMTR-EEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQV---GFHFVLRLVPDHTYGVYDHETKEWNGIVKELM 210 (504)
Q Consensus 135 ~~~l~V~~~-~~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l---~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~ 210 (504)
.++|+|++. ..+||.+..+ ++.+.|+.+|+++++++++ |++++++.. .|..++..|.
T Consensus 54 ~~~l~vg~~~~~~P~~~~~~------~g~~~G~~~dl~~~i~~~~~~~g~~v~~~~~-------------~~~~~~~~l~ 114 (291)
T 2yjp_A 54 KGVIRIGVFGDKPPFGYVDA------NGKNQGFDVEIAKDLAKDLLGSPDKVEFVLT-------------EAANRVEYVR 114 (291)
T ss_dssp HTCEEEEECSEETTTEEECT------TSCEESHHHHHHHHHHHHHHSCGGGEEEEEC-------------CGGGHHHHHH
T ss_pred CCeEEEEEcCCCCCceEECC------CCCEeehHHHHHHHHHHHhccCCceEEEEEc-------------cHHHHHHHHh
Confidence 457999985 4588887653 3678999999999999999 999999854 4889999999
Q ss_pred hccccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhCC
Q psy1412 211 DKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFSP 290 (504)
Q Consensus 211 ~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~p 290 (504)
+|++|+++++++.+.+|.+.++|+.||...+.++++++..
T Consensus 115 ~G~~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~---------------------------------------- 154 (291)
T 2yjp_A 115 SGKVDLILANFTQTPERAEAVDFADPYMKVALGVVSPKNK---------------------------------------- 154 (291)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTS----------------------------------------
T ss_pred CCCeeEEEeCCCCChHHHccceeccCeeecceEEEEeCCC----------------------------------------
Confidence 9999999988999999999999999999999999987542
Q ss_pred CCccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhhc
Q psy1412 291 YEWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILFL 370 (504)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~dL 370 (504)
+|++++||
T Consensus 155 ------------------------------------------------------------------------~i~sl~dL 162 (291)
T 2yjp_A 155 ------------------------------------------------------------------------PITDMAQL 162 (291)
T ss_dssp ------------------------------------------------------------------------CCCSGGGG
T ss_pred ------------------------------------------------------------------------CCCCHHHh
Confidence 24567777
Q ss_pred cCCCCceeeeeecchhccchhHHHHHHHHHHHhcCCCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcCCccEEcCC
Q psy1412 371 GGQGDETFVTIDLSQRADSKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNCNLTQIGG 449 (504)
Q Consensus 371 ~~~~~i~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c~l~~vg~ 449 (504)
... ++|...... ... .+.... .....+.+.+.+++++++.+|+ +|++.+.+.+.++.++..++.+++.
T Consensus 163 ~gk---~v~~~~g~~-----~~~--~l~~~~-~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~ 231 (291)
T 2yjp_A 163 KDQ---TLLVNKGTT-----ADA--FFTKSH-PEVKLLKFDQNTETFDALKDGRGVALAHDNALLWAWAKENPNFEVAIG 231 (291)
T ss_dssp TTS---EEEEETTSH-----HHH--HHHHHC-TTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEEC
T ss_pred CCC---EEEEecCCc-----HHH--HHHHhC-CCceEEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEEcCC
Confidence 643 223221000 000 001100 1112344678999999999999 8999999999988877767888887
Q ss_pred ccCCcce-EEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhccC
Q psy1412 450 LLDSKGY-GIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWWKN 493 (504)
Q Consensus 450 ~~~~~~~-g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~~~ 493 (504)
.+...++ +++++|++| +++.||++|.++.++|.+++|.+||+..
T Consensus 232 ~~~~~~~~~~~~~k~~~~l~~~l~~al~~l~~~g~~~~i~~k~~~~ 277 (291)
T 2yjp_A 232 NLGPAEFIAPAVQKGNADLLNWVNGEIAAMKKDGRLKAAYEKTLLP 277 (291)
T ss_dssp CSSSCEEECCEEETTCHHHHHHHHHHHHHHHHHSHHHHHHHHHTHH
T ss_pred cccCCcceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHhccc
Confidence 7888888 999999987 9999999999999999999999999874
No 37
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.68 E-value=2.5e-16 Score=149.92 Aligned_cols=214 Identities=19% Similarity=0.270 Sum_probs=162.1
Q ss_pred CCeEEEEEeecc-cCeEEEecCCCCCCCccceehhHHHHHHHHHHc---CceEEEEEcCCCCCccccCCCCcchhhHHHH
Q psy1412 134 NNVTLIVMTREE-KPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQV---GFHFVLRLVPDHTYGVYDHETKEWNGIVKEL 209 (504)
Q Consensus 134 ~~~~l~V~~~~~-~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l---~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l 209 (504)
..++|+|++... +||.+.... ++.+.|+++|+++++++++ |++++++.. .|..++..|
T Consensus 36 ~~~~l~vg~~~~~~p~~~~~~~-----~g~~~G~~~~l~~~~~~~~~~pg~~v~~~~~-------------~~~~~~~~l 97 (259)
T 2v25_A 36 SKGQLIVGVKNDVPHYALLDQA-----TGEIKGFEVDVAKLLAKSILGDDKKIKLVAV-------------NAKTRGPLL 97 (259)
T ss_dssp HHTCEEEEECSEETTTEEEETT-----TTEEESHHHHHHHHHHHHHHSCTTSEEEEEC-------------CTTTHHHHH
T ss_pred hCCeEEEEECCCCCCeEEEECC-----CCeEEEeeHHHHHHHHHHhcCCCcceEEEEc-------------CHHHHHHHH
Confidence 346799998754 888776522 3679999999999999999 999998853 578899999
Q ss_pred hhccccceecceeeecccceeeeeccceeeccEEEEEEccCCCCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHhhC
Q psy1412 210 MDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIWLYVLAAYLLVSFTLFVMARFS 289 (504)
Q Consensus 210 ~~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~~~~~~~~fl~Pf~~~vWl~i~~~~~~v~~~~~~i~r~~ 289 (504)
.+|++|+++++++.+.+|.+.++|+.||.....++++++..
T Consensus 98 ~~g~~D~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--------------------------------------- 138 (259)
T 2v25_A 98 DNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEK--------------------------------------- 138 (259)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGG---------------------------------------
T ss_pred hCCCCCEEEecCccCHHHHhcCcccccceeCceEEEEeCCC---------------------------------------
Confidence 99999999988889999999999999999999999987542
Q ss_pred CCCccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCCCCCCcccccccceehccchhhhhhhhhhhhhhcccchhhhh
Q psy1412 290 PYEWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGSGLNPKVLQQGSSRTLDTALDSKIEIYQKMWRYMESKKCILF 369 (504)
Q Consensus 290 p~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~~~~p~~~~~~s~R~v~~An~Ltv~~~~~~~~~~~~i~s~~d 369 (504)
++++++|
T Consensus 139 -------------------------------------------------------------------------~i~~~~d 145 (259)
T 2v25_A 139 -------------------------------------------------------------------------KYKSLAD 145 (259)
T ss_dssp -------------------------------------------------------------------------CCCSGGG
T ss_pred -------------------------------------------------------------------------CCCCHHH
Confidence 2345666
Q ss_pred ccCCCCceeeeeecchhccchhHHHHHHHHHHHhcC---CCcccCChHHHHHhhhcCC-eEEEeecchhhhhhhcCCccE
Q psy1412 370 LGGQGDETFVTIDLSQRADSKIEIYQKMWRYMESKR---PSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNCNLT 445 (504)
Q Consensus 370 L~~~~~i~~g~~~~~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c~l~ 445 (504)
|.+.. +|... .+... ..+........ ..+.+.+.++++++|.+|+ +|++.+.+.+.++.++..+
T Consensus 146 L~g~~---i~~~~-----g~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~-- 213 (259)
T 2v25_A 146 MKGAN---IGVAQ-----AATTK--KAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSE-- 213 (259)
T ss_dssp CTTCE---EEEET-----TCSHH--HHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTEE--
T ss_pred hCCCE---EEEec-----CCchH--HHHHHHHHhcCCceeEEEeCCHHHHHHHHHcCCCcEEEecHHHHHHHHHhCCC--
Confidence 65432 22210 00000 00111111110 2245678899999999999 8999999888887766554
Q ss_pred EcCCccCCcceEEEecCCCC-CchHHHHHHHhhhccChhHHHHHhhc
Q psy1412 446 QIGGLLDSKGYGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWW 491 (504)
Q Consensus 446 ~vg~~~~~~~~g~a~~k~Sp-l~~~in~ail~l~e~G~l~~l~~kw~ 491 (504)
.++..+...+++++++|++| +++.+|++|.++.++ ++++.+||.
T Consensus 214 ~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~~~~~~--~~~i~~k~~ 258 (259)
T 2v25_A 214 ILPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEHKNE--IDALAKKWG 258 (259)
T ss_dssp ECSCCCSEEEECCEEETTCHHHHHHHHHHHHHTHHH--HHHHHHHTT
T ss_pred ccccccccceeEEEEcCCCHHHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 55666777789999999985 999999999999999 999999984
No 38
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=98.97 E-value=1.2e-09 Score=110.17 Aligned_cols=111 Identities=23% Similarity=0.416 Sum_probs=85.3
Q ss_pred eEEEEeeecCCCccccchhhhhhhcccccCCC-----ccccccccccchhhhHHHHHHHHHHHhhhcCC-c----ccccC
Q psy1412 8 LAAGLALLDKSSVIKTSNLSCDLEVPWRDGLS-----LYNYINTAEPALMYDSVHVLAAGLALLDKSSV-I----KTSNL 77 (504)
Q Consensus 8 ~~tg~r~~d~~~~~~~~~~~~~~~~~W~~g~~-----~~~~i~~~~~~~~yDav~~~a~a~~~~~~~~~-~----~~~~~ 77 (504)
.+++++..++..+. ..++.++|..... ....+.. .++++||||+++|+|++++.+... . .....
T Consensus 237 ~i~~~~~~~~~~~~-----~~~f~~~~~~~~~~~~~~~~~~~~~-~~a~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~ 310 (389)
T 4gpa_A 237 NVTGFQLVDFNTPM-----VTKLMDRWKKLDQREYPGSETPPKY-TSALTYDGVLVMAETFRSLRRQKIDISRRGNAGDC 310 (389)
T ss_dssp EEEEEECSCTTSHH-----HHHHHHHHTTSCTTTSTTTTSCCCH-HHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCCT
T ss_pred ceEEEEeecCCChH-----HHHHHHHHHHHhhhhcccCCCChhH-HHHHHHHHHHHHHHHHHHHHhhcccccccCCcccc
Confidence 45889988777766 7788888865211 1113444 789999999999999999874322 1 12233
Q ss_pred CCCCCCcccCchhHHHHhhh----------------------ceEEEeeccceeeeeEecCCCCceeec
Q psy1412 78 SCDLEVPWRDGLSLYNYINT----------------------LDLLKLKREELRKVGHWTPAEGINITD 124 (504)
Q Consensus 78 ~c~~~~~~~~G~~l~~~l~~----------------------~~i~~~~~~~~~~vg~W~~~~gl~~~~ 124 (504)
.|+...+|++|..|+++|++ |+|+|++++++++||+|++..||.+..
T Consensus 311 ~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~gl~~~~ 379 (389)
T 4gpa_A 311 LANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLVLIQ 379 (389)
T ss_dssp TCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEETTTEEEECC
T ss_pred ccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEEEEEEECCCCeEECC
Confidence 55777899999999999997 899999999999999999999998654
No 39
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=98.78 E-value=1.2e-08 Score=103.61 Aligned_cols=109 Identities=19% Similarity=0.364 Sum_probs=82.6
Q ss_pred EEEEeeecCCCccccchhhhhhhcccccCCCc-----c-ccccccccchhhhHHHHHHHHHHHhhhcC-Cc--ccccCCC
Q psy1412 9 AAGLALLDKSSVIKTSNLSCDLEVPWRDGLSL-----Y-NYINTAEPALMYDSVHVLAAGLALLDKSS-VI--KTSNLSC 79 (504)
Q Consensus 9 ~tg~r~~d~~~~~~~~~~~~~~~~~W~~g~~~-----~-~~i~~~~~~~~yDav~~~a~a~~~~~~~~-~~--~~~~~~c 79 (504)
+++++..+++.+. .++|.++|+..... . ..+.. +++++||||+++|+|++++.... .+ ...+.+|
T Consensus 239 ~~~~~~~~~~~~~-----~~~F~~~~~~~~~~~~~~~~~~~~~~-~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~ 312 (389)
T 3o21_A 239 ITGFQIVNNENPM-----VQQFIQRWVRLDEREFPEAKNAPLKY-TSALTHDAILVIAEAFRYLRRQRVDVSRRGSAGDC 312 (389)
T ss_dssp EEEEESCCTTCHH-----HHHHHHHHTTSCTTTSTTSSSSCCCH-HHHHHHHHHHHHHHHHHHHHHTTCCCC-----CCS
T ss_pred eEEEEEecCCChh-----HHHHHHHHHhccccccCCCCCCccch-hHHHHHHHHHHHHHHHHHHHhhCcccccCCCCCcC
Confidence 5889988777666 88888889652111 0 12333 78999999999999999986422 12 2345688
Q ss_pred --CCCCcccCchhHHHHhhh----------------------ceEEEeeccceeeeeEecCCCCceee
Q psy1412 80 --DLEVPWRDGLSLYNYINT----------------------LDLLKLKREELRKVGHWTPAEGINIT 123 (504)
Q Consensus 80 --~~~~~~~~G~~l~~~l~~----------------------~~i~~~~~~~~~~vg~W~~~~gl~~~ 123 (504)
+...+|.+|..|+++|++ |+|+|+.++++++||+|++..|+...
T Consensus 313 ~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~~~ 380 (389)
T 3o21_A 313 LANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYERFVPF 380 (389)
T ss_dssp CSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTEEECC
T ss_pred CCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceeeeEEcCCCCcccc
Confidence 455789999999999997 89999999999999999999998843
No 40
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=98.77 E-value=1.3e-08 Score=102.61 Aligned_cols=109 Identities=24% Similarity=0.507 Sum_probs=83.8
Q ss_pred EEEEeeecCCCccccchhhhhhhcccccCCCc-c-----ccccccccchhhhHHHHHHHHHHHhhhcC-Ccc--cccCCC
Q psy1412 9 AAGLALLDKSSVIKTSNLSCDLEVPWRDGLSL-Y-----NYINTAEPALMYDSVHVLAAGLALLDKSS-VIK--TSNLSC 79 (504)
Q Consensus 9 ~tg~r~~d~~~~~~~~~~~~~~~~~W~~g~~~-~-----~~i~~~~~~~~yDav~~~a~a~~~~~~~~-~~~--~~~~~c 79 (504)
+++++..+++.+. .++|.++|+..... . ..... .++++||||+++++|++++.... .+. ....+|
T Consensus 233 ~~~~~~~~~~~~~-----~~~F~~~~~~~~~~~~~~~~~~~~~~-~aa~~YDav~~la~Ai~~~~~~~~~~~~~~~~~~~ 306 (376)
T 3hsy_A 233 VSGFQIVDYDDSL-----VSKFIERWSTLEEKEYPGAHTATIKY-TSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDC 306 (376)
T ss_dssp EEEEESCCTTSHH-----HHHHHHHHTTSCTTTSTTCSCSSCCH-HHHHHHHHHHHHHHHHHHHHHTTCCCSCCCCCCCT
T ss_pred ceEEEEecCCchH-----HHHHHHHHHhccccccCCCCCcccch-hHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCcc
Confidence 5889988776666 78888888652111 0 02333 78999999999999999986421 111 234578
Q ss_pred --CCCCcccCchhHHHHhhh----------------------ceEEEeeccceeeeeEecCCCCceee
Q psy1412 80 --DLEVPWRDGLSLYNYINT----------------------LDLLKLKREELRKVGHWTPAEGINIT 123 (504)
Q Consensus 80 --~~~~~~~~G~~l~~~l~~----------------------~~i~~~~~~~~~~vg~W~~~~gl~~~ 123 (504)
++..+|.+|..|+++|++ |+|+|+.++++++||+|++..||...
T Consensus 307 ~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~~~ 374 (376)
T 3hsy_A 307 LANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVT 374 (376)
T ss_dssp TCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTTEEEEC
T ss_pred CCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCceEEEEEcCCCCceec
Confidence 777889999999999997 89999999999999999999998753
No 41
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=98.76 E-value=1.3e-08 Score=103.21 Aligned_cols=114 Identities=25% Similarity=0.501 Sum_probs=82.4
Q ss_pred EEEEeeecCCCccccchhhhhhhcccccCCCcc--ccccccccchhhhHHHHHHHHHHHhhhcCCcccccCCCCCCCccc
Q psy1412 9 AAGLALLDKSSVIKTSNLSCDLEVPWRDGLSLY--NYINTAEPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWR 86 (504)
Q Consensus 9 ~tg~r~~d~~~~~~~~~~~~~~~~~W~~g~~~~--~~i~~~~~~~~yDav~~~a~a~~~~~~~~~~~~~~~~c~~~~~~~ 86 (504)
++|++..++..+. ..+++.++.++|....... ..... .++++||||+++++|++++.+...+....++|....+|.
T Consensus 245 ~~g~~~~~~~~~~-~~~f~~~~~~~~~~~~~~~~~~~p~~-~a~~~YDAv~~la~Al~~~~~~~~~~~~~~~c~~~~~~~ 322 (393)
T 3om0_A 245 ILGFSMFNTSHPF-YPEFVRSLNMSWRENCEASTYPGPAL-SAALMFDAVHVVVSAVRELNRSQEIGVKPLACTSANIWP 322 (393)
T ss_dssp EEEEECCCTTSTT-HHHHHHHHHHHHTTTSCGGGCCSCCH-HHHHHHHHHHHHHHHHHHHTTTSCCCCCCCCTTCCCCCT
T ss_pred EEEEEEecCCccH-HHHHHHHHHHHhhhhccCCCCCCCch-HHHHHHhHHHHHHHHHHHHhhcccCcCCCcCCCCCCccc
Confidence 5888887765543 2234666667776311100 01222 789999999999999999875555666778999889999
Q ss_pred CchhHHHHhhh----------------------ceEEEeeccceeeeeEecCCCCceeec
Q psy1412 87 DGLSLYNYINT----------------------LDLLKLKREELRKVGHWTPAEGINITD 124 (504)
Q Consensus 87 ~G~~l~~~l~~----------------------~~i~~~~~~~~~~vg~W~~~~gl~~~~ 124 (504)
+|..+.++|++ |+|+++.++++++||+|++..|+.+..
T Consensus 323 ~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~gl~~~~ 382 (393)
T 3om0_A 323 HGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNRTLAMNA 382 (393)
T ss_dssp THHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEEEEEECC-------
T ss_pred CchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEeeeEcCCCCccccc
Confidence 99999999997 899999999999999999999988654
No 42
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.63 E-value=1.1e-07 Score=93.27 Aligned_cols=82 Identities=7% Similarity=-0.041 Sum_probs=65.2
Q ss_pred ccCChHHHHHhhhcCC-eEEEeecchhhhhhhcC----CccEEcCCccCCcceEEEecCCCC--CchHHHHHHHhhhccC
Q psy1412 409 FVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRN----CNLTQIGGLLDSKGYGIATPKGSP--WRDRISLAILELQEKG 481 (504)
Q Consensus 409 ~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~----c~l~~vg~~~~~~~~g~a~~k~Sp--l~~~in~ail~l~e~G 481 (504)
+..+.++++..|.+|+ +|.+.+.+...++.++. .++..+.......+++|++||+-| +++.++.+|.++.++|
T Consensus 153 ~~g~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~~~~~~~lrvl~~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~d~ 232 (310)
T 3n5l_A 153 LNSSHEVNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVIWKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGANA 232 (310)
T ss_dssp EECCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEEEEEEEEECCEEEEETTSCHHHHHHHHHHHHHCCCSH
T ss_pred ccCCHHHHHHHHHcCCccEEEecchhHHHHHHhCccchhCEEEEEECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCCCh
Confidence 3456778999999999 88888888877776654 467766644344567999999954 9999999999999999
Q ss_pred hhHHHHHhh
Q psy1412 482 TIQMLYDKW 490 (504)
Q Consensus 482 ~l~~l~~kw 490 (504)
...++.++|
T Consensus 233 ~~~~~l~~~ 241 (310)
T 3n5l_A 233 EQKKVLADL 241 (310)
T ss_dssp HHHHHHHHT
T ss_pred hHHHHHHhc
Confidence 999888776
No 43
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.60 E-value=1.9e-07 Score=92.09 Aligned_cols=82 Identities=13% Similarity=-0.009 Sum_probs=65.8
Q ss_pred ccCChHHHHHhhhcCC-eEEEeecchhhhhhhcC----CccEEcCCccCCcceEEEecCCCC--CchHHHHHHHhhhccC
Q psy1412 409 FVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRN----CNLTQIGGLLDSKGYGIATPKGSP--WRDRISLAILELQEKG 481 (504)
Q Consensus 409 ~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~----c~l~~vg~~~~~~~~g~a~~k~Sp--l~~~in~ail~l~e~G 481 (504)
+..+..+++..|.+|+ +|.+.+.+....+.++. .++.++.......+++|+++|+-| +++.|+.+|+++.++|
T Consensus 162 ~~~~~~~a~~al~~G~vDa~~~~~~~~~~~~~~~p~~~~~lrvl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d~ 241 (321)
T 3p7i_A 162 VNAGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTP 241 (321)
T ss_dssp EECCHHHHHHHHHTTSSSEEEEEHHHHHTHHHHCHHHHTTEEEEEECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTCSH
T ss_pred ecCCHHHHHHHHHCCCceEEEechHHHHHHHHhCcchhccEEEEEEcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCCCH
Confidence 3456788999999999 88888888877776643 467777655455567999999954 9999999999999999
Q ss_pred hhHHHHHhh
Q psy1412 482 TIQMLYDKW 490 (504)
Q Consensus 482 ~l~~l~~kw 490 (504)
...++.+++
T Consensus 242 ~~~~~l~~~ 250 (321)
T 3p7i_A 242 EEKAVLERL 250 (321)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 988887765
No 44
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=98.56 E-value=8.2e-08 Score=96.49 Aligned_cols=76 Identities=18% Similarity=0.318 Sum_probs=63.0
Q ss_pred ccchhhhHHHHHHHHHHHhhhc-CCcccccCCCCCC--CcccCchhHHHHhhh--------------------ceEEEee
Q psy1412 48 EPALMYDSVHVLAAGLALLDKS-SVIKTSNLSCDLE--VPWRDGLSLYNYINT--------------------LDLLKLK 104 (504)
Q Consensus 48 ~~~~~yDav~~~a~a~~~~~~~-~~~~~~~~~c~~~--~~~~~G~~l~~~l~~--------------------~~i~~~~ 104 (504)
..+++||||+++|+|++++.+. ..+.....+|... .+|.+|..|+++|++ |+|+|++
T Consensus 259 ~~~~~yDaV~~~A~A~~~~~~~~~~i~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl~i~F~~~G~~~~~~~~Iinl~ 338 (364)
T 3qel_B 259 LPARVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGRDLSFSEDGYQMHPKLVIILLN 338 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCCCCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTEECCBCTTSSBSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccCCHHHHHHHHhhceEeCceEEECCCCCcccceEEEEEEc
Confidence 5789999999999999998653 3456667899665 379999999999997 9999998
Q ss_pred -ccceeeeeEecCCCCceeec
Q psy1412 105 -REELRKVGHWTPAEGINITD 124 (504)
Q Consensus 105 -~~~~~~vg~W~~~~gl~~~~ 124 (504)
+.++++||+|++ .+|.+..
T Consensus 339 ~~~~~~~VG~W~~-~~L~~~~ 358 (364)
T 3qel_B 339 KERKWERVGKWKD-KSLQMKY 358 (364)
T ss_dssp TTSCEEEEEEECS-SCEEESC
T ss_pred CCCCcEEEEEECC-CeEEeCc
Confidence 678999999995 4777653
No 45
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=98.52 E-value=1.3e-07 Score=95.73 Aligned_cols=107 Identities=33% Similarity=0.693 Sum_probs=84.5
Q ss_pred EEEEeeecCCCccccchhhhhhhcccccC-----CC----ccc-cccccccchhhhHHHHHHHHHHHhhhcCCcccccCC
Q psy1412 9 AAGLALLDKSSVIKTSNLSCDLEVPWRDG-----LS----LYN-YINTAEPALMYDSVHVLAAGLALLDKSSVIKTSNLS 78 (504)
Q Consensus 9 ~tg~r~~d~~~~~~~~~~~~~~~~~W~~g-----~~----~~~-~i~~~~~~~~yDav~~~a~a~~~~~~~~~~~~~~~~ 78 (504)
++|++..+++.+. .++|.++|... +. ..+ .+.. .++++||||+++++|++++. ......++
T Consensus 245 ~~~~~~~~~~~~~-----~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~-~aa~~YDav~~~a~Al~~a~---~~~~~~~~ 315 (395)
T 3h6g_A 245 MTGFRILNTENTQ-----VSSIIEKWSMERLQAPPKPDSGLLDGFMTT-DAALMYDAVHVVSVAVQQFP---QMTVSSLQ 315 (395)
T ss_dssp EEEEECSCTTSHH-----HHHHHHHHHHC------CCSSCBCTTCCCH-HHHHHHHHHHHHHHHHHTCT---TCCCCCCC
T ss_pred eEEEEEecCCcHH-----HHHHHHHHHhcccccCcccCCCcCCCccch-hHHHHHhHHHHHHHHHHhhh---cCCCcCCC
Confidence 5899988877666 77888888531 10 000 1333 78999999999999999763 33456678
Q ss_pred CCCCCcccCchhHHHHhhh-----------------------ceEEEeeccceeeeeEecCCCCceeec
Q psy1412 79 CDLEVPWRDGLSLYNYINT-----------------------LDLLKLKREELRKVGHWTPAEGINITD 124 (504)
Q Consensus 79 c~~~~~~~~G~~l~~~l~~-----------------------~~i~~~~~~~~~~vg~W~~~~gl~~~~ 124 (504)
|....+|.+|..+.++|++ |+|+++++.+++.||+|++..|+.+..
T Consensus 316 c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~~~~ 384 (395)
T 3h6g_A 316 CNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTE 384 (395)
T ss_dssp TTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEEETTTEECCCC
T ss_pred CCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCceEEEEEcCCCCccccC
Confidence 9999999999999999997 889999999999999999999998654
No 46
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=98.45 E-value=2.9e-07 Score=93.00 Aligned_cols=109 Identities=23% Similarity=0.491 Sum_probs=81.6
Q ss_pred EEEEeeecCCCccccchhhhhhhcccccC-----CCccc-cccccccchhhhHHHHHHHHHHHhhhcC-Cc--ccccCCC
Q psy1412 9 AAGLALLDKSSVIKTSNLSCDLEVPWRDG-----LSLYN-YINTAEPALMYDSVHVLAAGLALLDKSS-VI--KTSNLSC 79 (504)
Q Consensus 9 ~tg~r~~d~~~~~~~~~~~~~~~~~W~~g-----~~~~~-~i~~~~~~~~yDav~~~a~a~~~~~~~~-~~--~~~~~~c 79 (504)
+++++..+++.+. .++|.++|... +...+ .... .++++||||+++++|++++.... .+ .....+|
T Consensus 236 v~~~~~~~~~~~~-----~~~F~~~~~~~~~~~~p~~~~~~~~~-~aa~~YDav~~~a~Al~~~~~~~~~~~~~~~~~~c 309 (384)
T 3saj_A 236 VTGFQLVNYTDTI-----PARIMQQWRTSDSRDHTRVDWKRPKY-TSALTYDGVKVMAEAFQSLRRQRIDISRRGNAGDC 309 (384)
T ss_dssp EEEEECCCTTSHH-----HHHHHHHHHHHHHHC------CCCCH-HHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSCCCS
T ss_pred eEEEEeecCCChH-----HHHHHHHHHhcCccccCCCCCCccch-hHHHHHHHHHHHHHHHHHHHhhccceecCCCCCCC
Confidence 5788887776666 78888888541 10000 1222 68999999999999999986422 12 2345689
Q ss_pred CCC--CcccCchhHHHHhhh----------------------ceEEEeeccceeeeeEecCCCCceee
Q psy1412 80 DLE--VPWRDGLSLYNYINT----------------------LDLLKLKREELRKVGHWTPAEGINIT 123 (504)
Q Consensus 80 ~~~--~~~~~G~~l~~~l~~----------------------~~i~~~~~~~~~~vg~W~~~~gl~~~ 123 (504)
... .+|.+|..+.++|++ |+|++++++++++||+|++..|+...
T Consensus 310 ~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~W~~~~gl~~~ 377 (384)
T 3saj_A 310 LANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFVPA 377 (384)
T ss_dssp CCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTEEEEC
T ss_pred CCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCcceeEEEcCCCCcccc
Confidence 653 679999999999997 89999999999999999999888754
No 47
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.44 E-value=2.4e-07 Score=85.77 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=65.4
Q ss_pred ccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecc------cceeeeec
Q psy1412 161 AMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYA------RESVIDFT 234 (504)
Q Consensus 161 ~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~------R~~~vdFs 234 (504)
.+|+|+.--|-+.+. |+++++..+. .|++.+..|.+|++|+|+.+++.+++ |...+||+
T Consensus 28 ~~yeGlatgl~~~f~---gi~~~i~~mr------------g~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg 92 (231)
T 2ozz_A 28 RLYEGLASGLKAQFD---GIPFYYAHMR------------GADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELG 92 (231)
T ss_dssp HHHHHHHHHHHHTTT---TSCEEEEECS------------CHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECC
T ss_pred hhhhHHHHHHHHHhc---CCcEEEEEcc------------ChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcC
Confidence 578899888887773 8888888542 58999999999999999999999999 99999999
Q ss_pred cceeeccEEEEEEccC
Q psy1412 235 KPFMNLGIGILFKVPT 250 (504)
Q Consensus 235 ~p~~~~g~~ilv~~~~ 250 (504)
.||+..+-.++++++.
T Consensus 93 ~~yYv~~h~li~~~~~ 108 (231)
T 2ozz_A 93 PHTYVGEHQLICRKGE 108 (231)
T ss_dssp TTSSSCCEEEEEETTC
T ss_pred CCccccCeEEEEeCCC
Confidence 9999888888888653
No 48
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=97.95 E-value=1.8e-05 Score=79.55 Aligned_cols=74 Identities=22% Similarity=0.295 Sum_probs=60.8
Q ss_pred ccchhhhHHHHHHHHHHHhhhcCCcccccCCCC-CCCcccCchhHHHHhhh-----------------------ceEEEe
Q psy1412 48 EPALMYDSVHVLAAGLALLDKSSVIKTSNLSCD-LEVPWRDGLSLYNYINT-----------------------LDLLKL 103 (504)
Q Consensus 48 ~~~~~yDav~~~a~a~~~~~~~~~~~~~~~~c~-~~~~~~~G~~l~~~l~~-----------------------~~i~~~ 103 (504)
.++++||||+++|+|++++.+...+..+..+|. ...+|+.|..|.+++++ |+|+|+
T Consensus 277 ~~~~~YdAV~~~a~Al~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~~~~I~~~ 356 (384)
T 3qek_A 277 ESAHISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYSIMNL 356 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCCCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSCCEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCcccEEEEEE
Confidence 478999999999999999976555555667894 46789999999998765 899999
Q ss_pred eccceeeeeEecCCCCcee
Q psy1412 104 KREELRKVGHWTPAEGINI 122 (504)
Q Consensus 104 ~~~~~~~vg~W~~~~gl~~ 122 (504)
.+.++++||.|+.. .+.+
T Consensus 357 ~~~~~~~VG~w~~~-~l~i 374 (384)
T 3qek_A 357 QNRKLVQVGIFNGS-YIIQ 374 (384)
T ss_dssp ETTEEEEEEEECSS-SEEE
T ss_pred cCCceEEEEEEeCC-eEee
Confidence 99999999999843 4543
No 49
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=96.62 E-value=0.0077 Score=59.33 Aligned_cols=68 Identities=9% Similarity=-0.059 Sum_probs=42.2
Q ss_pred HHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeee----cccceeeeeccceeeccEEEE
Q psy1412 170 LLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTIN----YARESVIDFTKPFMNLGIGIL 245 (504)
Q Consensus 170 ll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit----~~R~~~vdFs~p~~~~g~~il 245 (504)
+.+.+++. |++++++.+.. .+.+..++..|..|++|+++.+.+.. .++.....++.++...+..++
T Consensus 35 l~~~~~~~-G~~v~~~~~~~---------~g~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~lv 104 (348)
T 3uif_A 35 FPEELRKQ-GIKVEWVPAAM---------ASVGPVINEGFASGKIDFGIYGDLPPIILNASKPTVQLVAPWGTTSNSYLV 104 (348)
T ss_dssp HHHHHHHT-TEEEEEEEECT---------TCHHHHHHHHHHTTCCCEEEEESHHHHHHHHHSCCEEEEEECCCCCCCEEE
T ss_pred HHHHHHhc-CCeEEEEeccc---------CCCcHHHHHHHHcCCCCEEecCcHHHHHHHhCCCCEEEEEeccCCCceEEE
Confidence 44455555 98888854432 34567799999999999998555433 344444444445555555555
Q ss_pred EE
Q psy1412 246 FK 247 (504)
Q Consensus 246 v~ 247 (504)
++
T Consensus 105 v~ 106 (348)
T 3uif_A 105 VP 106 (348)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 50
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=96.61 E-value=0.02 Score=55.55 Aligned_cols=82 Identities=12% Similarity=0.111 Sum_probs=56.9
Q ss_pred cccCChHHHHHhhhcCC-eEEEeecchhhhhhhcCCccEEcC---C----------ccC---------CcceEEEecCCC
Q psy1412 408 VFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNCNLTQIG---G----------LLD---------SKGYGIATPKGS 464 (504)
Q Consensus 408 ~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c~l~~vg---~----------~~~---------~~~~g~a~~k~S 464 (504)
+..+...+++..+..|+ ++.+........+++. .++..+. + .+. ...+|++.|||-
T Consensus 169 Vpy~G~~~a~~aL~~G~VD~~~~~~~~~~~~i~~-g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~ 247 (312)
T 2f5x_A 169 IPYKGTAPAMNDLLGKQVDLMCDQTTNTTQQITS-GKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGT 247 (312)
T ss_dssp EECSSHHHHHHHHHTTSSCEEEEEHHHHHHHHHT-TSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTC
T ss_pred eccCChHHHHHHHHcCCccEEEechHHHHHHHHc-CCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCC
Confidence 44577889999999999 7777766555433332 2332221 0 111 123689999997
Q ss_pred C--CchHHHHHHHhhhccChhHHHHHhh
Q psy1412 465 P--WRDRISLAILELQEKGTIQMLYDKW 490 (504)
Q Consensus 465 p--l~~~in~ail~l~e~G~l~~l~~kw 490 (504)
| .++.++++|.++.+++.+.+..+++
T Consensus 248 p~~vv~~l~~al~~~~~~p~~~~~~~~~ 275 (312)
T 2f5x_A 248 PKPVVDKLVKSLQAGLADPKFQERMKQL 275 (312)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 6 9999999999999999888776664
No 51
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=96.61 E-value=0.016 Score=56.38 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=56.6
Q ss_pred cccCChHHHHHhhhcCC-eEEEeecchhhhhhhcCCccEEcC---C----------cc---------CCcceEEEecCCC
Q psy1412 408 VFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNCNLTQIG---G----------LL---------DSKGYGIATPKGS 464 (504)
Q Consensus 408 ~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c~l~~vg---~----------~~---------~~~~~g~a~~k~S 464 (504)
+..+...+++..+..|+ ++++.......-+++. +++..+. + .+ ....+|++.|+|-
T Consensus 173 Vpy~G~~~a~~al~~G~vD~~~~~~~~~~~~i~~-g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~ 251 (314)
T 2dvz_A 173 VPYKGSGPAVADAVGGQIELIFDNLPSSMPQIQA-GKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGT 251 (314)
T ss_dssp EECSSHHHHHHHHHHTSSSEEEEEHHHHHHHHHT-TSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTC
T ss_pred cccCCHHHHHHHHHcCCceEEEEcHHHHHHHHHc-CCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCC
Confidence 44577889999999999 7777766554433332 2332221 0 01 1224699999997
Q ss_pred C--CchHHHHHHHhhhccChhHHHHHhh
Q psy1412 465 P--WRDRISLAILELQEKGTIQMLYDKW 490 (504)
Q Consensus 465 p--l~~~in~ail~l~e~G~l~~l~~kw 490 (504)
| .++.+++++.++.+++.+.+..+++
T Consensus 252 p~~vv~~l~~al~~~~~~p~~~~~~~~~ 279 (314)
T 2dvz_A 252 PMDVVNKLRDAAVVALKDPKVIKALDDQ 279 (314)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 6 9999999999999999888876665
No 52
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=96.19 E-value=0.043 Score=52.61 Aligned_cols=81 Identities=9% Similarity=0.042 Sum_probs=47.8
Q ss_pred CChHHHHHhhhcCC-eEEEeecchhhhhhhcCCccEEcCC--ccCCcceEEEec----CCCC-CchHHHHHHHh----hh
Q psy1412 411 SDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNCNLTQIGG--LLDSKGYGIATP----KGSP-WRDRISLAILE----LQ 478 (504)
Q Consensus 411 ~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c~l~~vg~--~~~~~~~g~a~~----k~Sp-l~~~in~ail~----l~ 478 (504)
.+..+.+.++.+|+ +|++...+...+...+. .+..+.. .+....-.+++. ++.| +.+.|.+++.+ +.
T Consensus 139 ~~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~al~~a~~~~~ 217 (308)
T 2x26_A 139 LTPADARAAFQQGNVDAWAIWDPYYSAALLQG-GVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTR 217 (308)
T ss_dssp CCHHHHHHHHHTTSSSEEEEETTHHHHHHHHS-SEEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHcCCCCEEEecchhHHHHHhcC-CcEEEecCCCcCCcceEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999 88888777776665432 3343322 121111223332 3334 77888888776 44
Q ss_pred ccC-hhHHHHHhhcc
Q psy1412 479 EKG-TIQMLYDKWWK 492 (504)
Q Consensus 479 e~G-~l~~l~~kw~~ 492 (504)
+++ ...++..+|+.
T Consensus 218 ~~~~~~~~~~~~~~~ 232 (308)
T 2x26_A 218 SQREQSIALLAKTMG 232 (308)
T ss_dssp HTHHHHHHHHHHHHT
T ss_pred HCHHHHHHHHHHHhC
Confidence 454 45566666654
No 53
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=96.17 E-value=0.0032 Score=63.96 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=49.7
Q ss_pred ccchhhhHHHHHHHHHHHhhhcCCcccccCCCC--CCCcccCchhHHHHhhh--------------------ceEEEeec
Q psy1412 48 EPALMYDSVHVLAAGLALLDKSSVIKTSNLSCD--LEVPWRDGLSLYNYINT--------------------LDLLKLKR 105 (504)
Q Consensus 48 ~~~~~yDav~~~a~a~~~~~~~~~~~~~~~~c~--~~~~~~~G~~l~~~l~~--------------------~~i~~~~~ 105 (504)
.++++||||+++|+|++++...........+|. ....|.+|..+.++|++ |+|+++++
T Consensus 313 ~a~~~YDAv~~la~Al~~a~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f~~Gd~~~~~~I~~~~~ 392 (433)
T 4f11_A 313 FHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFRNGERMGTIKFTQFQD 392 (433)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEEETTEEECEEEEEEEET
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEEecCceeeeEEEEEEEC
Confidence 678999999999999999853210000001121 12256678999999987 78899988
Q ss_pred cceeeeeEecCC
Q psy1412 106 EELRKVGHWTPA 117 (504)
Q Consensus 106 ~~~~~vg~W~~~ 117 (504)
.+++.||.|++.
T Consensus 393 g~~~~VG~~~~~ 404 (433)
T 4f11_A 393 SREVKVGEYNAV 404 (433)
T ss_dssp TEEEEEEEEETT
T ss_pred CceEEEEEEECC
Confidence 889999999764
No 54
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=96.16 E-value=0.033 Score=53.75 Aligned_cols=82 Identities=12% Similarity=0.127 Sum_probs=57.0
Q ss_pred cccCChHHHHHhhhcCC-eEEEeecchhhhhhhcCCccEEcC---C----------c--------c-CCcceEEEecCCC
Q psy1412 408 VFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNCNLTQIG---G----------L--------L-DSKGYGIATPKGS 464 (504)
Q Consensus 408 ~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c~l~~vg---~----------~--------~-~~~~~g~a~~k~S 464 (504)
+..++..+++..+..|+ ++++.......-+++. +++..+. + . + ....+|++.|||-
T Consensus 160 Vpy~g~~~a~~al~~G~vD~~~~~~~~~~~~i~~-g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~ 238 (301)
T 2qpq_A 160 VPYKGCGPALNDVLGSQIGLAVVTASSAIPFIKA-GKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGAT 238 (301)
T ss_dssp EECSSHHHHHHHHHTTSSSCEEEEHHHHHHHHHT-TSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTC
T ss_pred eccCChHHHHHHHHCCCccEEEEcHHHHHHHHhc-CCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCC
Confidence 44678889999999999 7777665554333332 3333321 0 0 1 1224689999996
Q ss_pred C--CchHHHHHHHhhhccChhHHHHHhh
Q psy1412 465 P--WRDRISLAILELQEKGTIQMLYDKW 490 (504)
Q Consensus 465 p--l~~~in~ail~l~e~G~l~~l~~kw 490 (504)
| .++.++++|.++.+++.+.+..+++
T Consensus 239 p~~vv~~l~~al~~~~~~~~~~~~~~~~ 266 (301)
T 2qpq_A 239 PMAVRQKLYDGIAKVMQRDDVQKKLADL 266 (301)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 6 9999999999999999888877665
No 55
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=95.69 E-value=0.13 Score=45.81 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=47.9
Q ss_pred ehhHHHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccceeeeeccceeeccEE
Q psy1412 165 GFCIDLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIG 243 (504)
Q Consensus 165 G~~idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ 243 (504)
.+-.+++..+.++. +.++++. .+..+.++..|.+|++|++++...... ..+. ..++....++
T Consensus 21 ~~l~~~l~~f~~~~P~i~i~i~-------------~~~~~~~~~~l~~g~~Di~i~~~~~~~---~~~~-~~~l~~~~~~ 83 (222)
T 4ab5_A 21 DWLMPAMGEFRPMWPQVELDIV-------------SGFQADPVGLLLQHRADLAIVSEAEKQ---NGIS-FQPLFAYEMV 83 (222)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEE-------------CCCCSCTHHHHHTTSCSEEEESCCCCC---TTEE-EEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEe-------------cCCHHHHHHHHHcCCcCEEEecCCCCc---CCeE-EEEeecCcEE
Confidence 45557888888776 5666665 445677999999999999987543322 2244 3588888888
Q ss_pred EEEEcc
Q psy1412 244 ILFKVP 249 (504)
Q Consensus 244 ilv~~~ 249 (504)
+++++.
T Consensus 84 ~v~~~~ 89 (222)
T 4ab5_A 84 GICAPD 89 (222)
T ss_dssp EEECTT
T ss_pred EEecCC
Confidence 888754
No 56
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=95.66 E-value=0.1 Score=50.60 Aligned_cols=63 Identities=10% Similarity=0.025 Sum_probs=46.1
Q ss_pred HHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeee----cccceeeeeccceeeccEEEEEEc
Q psy1412 174 IAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTIN----YARESVIDFTKPFMNLGIGILFKV 248 (504)
Q Consensus 174 la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit----~~R~~~vdFs~p~~~~g~~ilv~~ 248 (504)
..++.|++++++.. ++|..++..|.+|++|+++++.... .++.....+..++...+..+++++
T Consensus 58 ~~~~~g~~v~~~~~------------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 124 (346)
T 3qsl_A 58 FFKDEGLDVSIADF------------AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSK 124 (346)
T ss_dssp HHHHTTCEEEEEEC------------SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEET
T ss_pred chHhhCCeEEEEec------------CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEec
Confidence 34677999988743 3688999999999999998776544 456666777666666666666654
No 57
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=95.19 E-value=0.13 Score=46.36 Aligned_cols=68 Identities=6% Similarity=0.022 Sum_probs=48.6
Q ss_pred ehhHHHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccceeeeeccceeeccEE
Q psy1412 165 GFCIDLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIG 243 (504)
Q Consensus 165 G~~idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ 243 (504)
.+-.+++..+.+.. +.++++. .+....++..|.+|++|+++....... ..+. +.|..+..++
T Consensus 24 ~~l~~~l~~~~~~~P~v~i~~~-------------~~~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l~-~~~l~~~~~~ 86 (232)
T 3ho7_A 24 YLLPRVFPIWKKELAGLEIHVS-------------EMQTSRCLASLLSGEIDMAIIASKAET---EGLE-DDLLYYEEFL 86 (232)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEE-------------ECCHHHHHHHHHHTSCSEEEESSCCCC---TTEE-EEEEEEEEEE
T ss_pred hhhHHHHHHHHHHCCCcEEEEE-------------eCCHHHHHHHHHcCCCCEEEEcCCCCC---CCeE-EEEecccCEE
Confidence 45567888887776 4566665 345678999999999999987654432 2333 3688888899
Q ss_pred EEEEcc
Q psy1412 244 ILFKVP 249 (504)
Q Consensus 244 ilv~~~ 249 (504)
+++++.
T Consensus 87 ~v~~~~ 92 (232)
T 3ho7_A 87 GYVSRC 92 (232)
T ss_dssp EEECTT
T ss_pred EEEcCC
Confidence 988754
No 58
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=95.17 E-value=0.056 Score=52.89 Aligned_cols=81 Identities=5% Similarity=-0.024 Sum_probs=51.3
Q ss_pred ChHHHHHhhhcCC-eEEEeecchhhhhhhcC-CccEEcCCcc-CC-cceEEEecCC----CC-----CchHHHHHHHhhh
Q psy1412 412 DYEEGVKRVLEGD-YAFLMESTMLDYEVQRN-CNLTQIGGLL-DS-KGYGIATPKG----SP-----WRDRISLAILELQ 478 (504)
Q Consensus 412 ~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~-c~l~~vg~~~-~~-~~~g~a~~k~----Sp-----l~~~in~ail~l~ 478 (504)
+..+.+..+.+|+ +|++...+.......+. .........+ .. ...+++++++ .| +.+.+++++..+.
T Consensus 190 ~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~ 269 (341)
T 3un6_A 190 SPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMN 269 (341)
T ss_dssp CGGGHHHHHHTTSCSEEEEETTHHHHHHHSSCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHcCCCCEEEecCCHHHHHHhcCCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999 89888888776655543 2222222222 22 2356777654 44 6667777777787
Q ss_pred ccChhHHHHHhhcc
Q psy1412 479 EKGTIQMLYDKWWK 492 (504)
Q Consensus 479 e~G~l~~l~~kw~~ 492 (504)
+++.-.++..+|+.
T Consensus 270 ~~~~~~~~~~~~~~ 283 (341)
T 3un6_A 270 DRKQSVDIMTHHFK 283 (341)
T ss_dssp SHHHHHHHHHHHSS
T ss_pred hCHHHHHHHHHHhC
Confidence 77654467777764
No 59
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=95.11 E-value=0.31 Score=43.05 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=48.3
Q ss_pred ehhHHHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccceeeeeccceeeccEE
Q psy1412 165 GFCIDLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIG 243 (504)
Q Consensus 165 G~~idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ 243 (504)
.+-.+++..+.++. +.++++.. +....+...|.+|++|++++...... ..+. ..|..+..++
T Consensus 17 ~~l~~~l~~~~~~~P~i~i~i~~-------------~~~~~~~~~l~~g~~Dl~i~~~~~~~---~~~~-~~~l~~~~~~ 79 (219)
T 3jv9_A 17 YLLPKLIVSLRRTAPKMPLMLEE-------------NYTHTLTESLKRGDVDAIIVAEPFQE---PGIV-TEPLYDEPFF 79 (219)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEE-------------ECHHHHHHHHHHTSSSEEEEESSCCC---TTEE-EEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEe-------------CCcHHHHHHHHcCCCCEEEEcCCCCC---CCee-EEEeeeceEE
Confidence 45557788887765 67777763 35677999999999999987553322 2333 3678888899
Q ss_pred EEEEcc
Q psy1412 244 ILFKVP 249 (504)
Q Consensus 244 ilv~~~ 249 (504)
+++++.
T Consensus 80 ~v~~~~ 85 (219)
T 3jv9_A 80 VIVPKG 85 (219)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 988754
No 60
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=94.34 E-value=0.18 Score=45.79 Aligned_cols=84 Identities=15% Similarity=0.120 Sum_probs=57.2
Q ss_pred cCCeEEEEEeecccCeEEEecCCCCCCCccceehhHHHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHhh
Q psy1412 133 TNNVTLIVMTREEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMD 211 (504)
Q Consensus 133 ~~~~~l~V~~~~~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~ 211 (504)
...++|+||+.... ...+-..++..+.++. +.++++.. +....++..|.+
T Consensus 16 ~~~g~l~Ig~~~~~----------------~~~~l~~~l~~f~~~~P~i~l~~~~-------------~~~~~~~~~l~~ 66 (241)
T 3oxn_A 16 QCDQTFTIATTDYA----------------MQTILPFALPRIYQEAPNVSFNFLP-------------LQHDRLSDQLTY 66 (241)
T ss_dssp SCCCEEEEEECSHH----------------HHHTHHHHHHHHHHHCTTCEEEEEE-------------CCGGGHHHHHHT
T ss_pred cCCceEEEEechHH----------------HHHHHHHHHHHHHHHCCCCEEEEEE-------------CCcccHHHHHHc
Confidence 34567888874221 1245567888888776 56777763 456789999999
Q ss_pred ccccceecceeeecccceeeeeccceeeccEEEEEEcc
Q psy1412 212 KKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVP 249 (504)
Q Consensus 212 g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~ 249 (504)
|++|++++.... ....+.+ .|+....+++++++.
T Consensus 67 g~~Dl~i~~~~~---~~~~~~~-~~l~~~~~~~v~~~~ 100 (241)
T 3oxn_A 67 EGADLAICRPTG---PVEPLRS-EILGRVGVLCLLSKQ 100 (241)
T ss_dssp SCCSEEEECCSS---CCTTEEE-EEEECCCEEEEEETT
T ss_pred CCCCEEEecCCC---CCcccee-EEeecccEEEEEeCC
Confidence 999999874332 2233443 678888888888754
No 61
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=94.33 E-value=0.047 Score=55.40 Aligned_cols=60 Identities=12% Similarity=0.171 Sum_probs=42.8
Q ss_pred ccchhhhHHHHHHHHHHHhhhcCCcccccCCCCCCCcccCchhHHHHhhh---------------------ceEEEeec-
Q psy1412 48 EPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGLSLYNYINT---------------------LDLLKLKR- 105 (504)
Q Consensus 48 ~~~~~yDav~~~a~a~~~~~~~~~~~~~~~~c~~~~~~~~G~~l~~~l~~---------------------~~i~~~~~- 105 (504)
.++.+||||+++|+|++++.... . .|.+|..+.++|++ |+|+++..
T Consensus 314 ~~~~~YdAv~~~A~Al~~~~~~~----------~--~~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~~~~~I~~~~~~ 381 (441)
T 1jdp_A 314 FVEGFHDAILLYVLALHEVLRAG----------Y--SKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRYGDFSVIAMTDV 381 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT----------C--CTTCHHHHHHHHSSEEEEETTEEEEECTTSBBCCEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC----------C--CCCCHHHHHHHHhCCeeECCccceEECCCCCccccEEEEecccC
Confidence 57899999999999999985211 0 13456677777765 77888753
Q ss_pred -c-ceeeeeEecCCCC
Q psy1412 106 -E-ELRKVGHWTPAEG 119 (504)
Q Consensus 106 -~-~~~~vg~W~~~~g 119 (504)
+ .++.||.|++..+
T Consensus 382 ~~g~~~~VG~~~~~~~ 397 (441)
T 1jdp_A 382 EAGTQEVIGDYFGKEG 397 (441)
T ss_dssp TTTEEEEEEEEETTTT
T ss_pred CCCceEEEEEEcCCCC
Confidence 2 3788899887654
No 62
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=93.64 E-value=0.8 Score=43.99 Aligned_cols=52 Identities=12% Similarity=0.008 Sum_probs=31.4
Q ss_pred ChHHHHHhhhcCC-eEEEeecchhhhhhhcC-CccEEcCCccCCcceEEEecCC
Q psy1412 412 DYEEGVKRVLEGD-YAFLMESTMLDYEVQRN-CNLTQIGGLLDSKGYGIATPKG 463 (504)
Q Consensus 412 ~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~-c~l~~vg~~~~~~~~g~a~~k~ 463 (504)
+..+.+..+.+|+ +|++...+.......+. .........+......+++.+.
T Consensus 166 ~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (324)
T 3ksx_A 166 SPANARAAFAAGQVDAWAIWDPWYSALTLDGSARLLANGEGLGLTGGFFLSSRR 219 (324)
T ss_dssp CHHHHHHHHHTTCCSEEEEETTHHHHHHHTTSEEEEEESTTSCCCCEEEEEEHH
T ss_pred CHHHHHHHHHcCCCCEEEEccHHHHHHHhcCCcEEEecccccCCCccEEEECHH
Confidence 6788999999999 88887777766554433 3333333333333345555543
No 63
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=93.03 E-value=0.1 Score=52.57 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=40.6
Q ss_pred ccchhhhHHHHHHHHHHHhhhcCCcccccCCCCCCCcccCchhHHHHhhh---------------------ceEEEe--e
Q psy1412 48 EPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGLSLYNYINT---------------------LDLLKL--K 104 (504)
Q Consensus 48 ~~~~~yDav~~~a~a~~~~~~~~~~~~~~~~c~~~~~~~~G~~l~~~l~~---------------------~~i~~~--~ 104 (504)
.++.+||||+++|+|++++..... .+.+|..+.++|++ |+|+++ .
T Consensus 317 ~~~~~ydav~~~a~Al~~~~~~~~------------~~~~~~~l~~~l~~~~f~g~~G~v~fd~~g~~~~~~~i~~~~~~ 384 (435)
T 1dp4_A 317 IPASFHDGLLLYVQAVTETLAQGG------------TVTDGENITQRMWNRSFQGVTGYLKIDRNGDRDTDFSLWDMDPE 384 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC------------CTTCHHHHHHTTTTEEEEETTEEEEECTTSBBCCCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC------------CCCCHHHHHHHHhCceeeccceeEEECCCCCccceeEEEEecCC
Confidence 678899999999999998842110 12234455555544 788888 3
Q ss_pred ccceeeeeEecCCC
Q psy1412 105 REELRKVGHWTPAE 118 (504)
Q Consensus 105 ~~~~~~vg~W~~~~ 118 (504)
+..++.||.|++..
T Consensus 385 ~g~~~~vg~~~~~~ 398 (435)
T 1dp4_A 385 TGAFRVVLNYNGTS 398 (435)
T ss_dssp TCCEEEEEEECTTT
T ss_pred CCcEEEEEEecCCC
Confidence 34488999998764
No 64
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=92.99 E-value=0.096 Score=54.24 Aligned_cols=71 Identities=23% Similarity=0.448 Sum_probs=46.6
Q ss_pred chhhhHHHHHHHHHHHhhhcCCcccccCCCCCCCcccCchhHHHHhhh----------------------ceEEEeec--
Q psy1412 50 ALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGLSLYNYINT----------------------LDLLKLKR-- 105 (504)
Q Consensus 50 ~~~yDav~~~a~a~~~~~~~~~~~~~~~~c~~~~~~~~G~~l~~~l~~----------------------~~i~~~~~-- 105 (504)
..+|+||.++|+||++|..... ......|....++ .+..|..+|++ |||+|...
T Consensus 384 ~~vy~AVyavAhALh~m~~~~~-~~~~~~c~~~~~~-~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~~~~YdI~n~~~~~ 461 (496)
T 3ks9_A 384 GFVINAIYAMAHGLQNMHHALC-PGHVGLCDAMKPI-DGSKLLDFLIKSSFIGVSGEEVWFDEKGDAPGRYDIMNLQYTE 461 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-TTCSSCCGGGSSC-CHHHHHHHHHTCEEECTTSCEEECCTTSCCCCEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHhccC-CCCCCCCcCCCCC-CHHHHHHHHHhcCCcCCCCCEEEECCCCCccceEEEEEEEECC
Confidence 4599999999999999863211 1122456543333 45678889887 89999763
Q ss_pred c---ceeeeeEecCCCCceee
Q psy1412 106 E---ELRKVGHWTPAEGINIT 123 (504)
Q Consensus 106 ~---~~~~vg~W~~~~gl~~~ 123 (504)
+ .+.+||.|.. ..|.+.
T Consensus 462 ~~~~~~~~VG~~~~-~~l~i~ 481 (496)
T 3ks9_A 462 ANRYDYVHVGTWHE-GVLNID 481 (496)
T ss_dssp --CEEEEEEEEEET-TEEEEC
T ss_pred CCCEEEEEEEEEeC-CeEEEe
Confidence 2 2578999973 234443
No 65
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=92.80 E-value=0.92 Score=40.27 Aligned_cols=69 Identities=7% Similarity=0.086 Sum_probs=47.5
Q ss_pred ehhHHHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccceeeeeccceeeccEE
Q psy1412 165 GFCIDLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIG 243 (504)
Q Consensus 165 G~~idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ 243 (504)
.+-.+++..+.++. +.++++. .+..+.++..|.+|++|+++...... ...+.+ .|+.+..++
T Consensus 18 ~~l~~~l~~f~~~~P~v~l~l~-------------~~~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~~-~~l~~~~~~ 80 (219)
T 1i6a_A 18 YLLPHIIPMLHQTFPKLEMYLH-------------EAQTHQLLAQLDSGKLDAVILALVKE---SEAFIE-VPLFDEPML 80 (219)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEE-------------ECCHHHHHHHHHHTSCSEEEEECCGG---GTTSEE-EEEEEEEEE
T ss_pred hhhhHHHHHHHHHCCCeEEEEE-------------ECChHHHHHHHHcCCeeEEEecCCCC---CCCcce-eeeecccEE
Confidence 45567888888877 4556665 34567899999999999998543221 222333 578888888
Q ss_pred EEEEccC
Q psy1412 244 ILFKVPT 250 (504)
Q Consensus 244 ilv~~~~ 250 (504)
+++++..
T Consensus 81 ~v~~~~h 87 (219)
T 1i6a_A 81 LAIYEDH 87 (219)
T ss_dssp EEEETTS
T ss_pred EEEcCCC
Confidence 8887653
No 66
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=92.79 E-value=0.067 Score=55.16 Aligned_cols=65 Identities=23% Similarity=0.398 Sum_probs=41.7
Q ss_pred cchhhhHHHHHHHHHHHhhhcCCcccccCCCCCCCcccCchhHHHHhhh----------------------ceEEEeec-
Q psy1412 49 PALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGLSLYNYINT----------------------LDLLKLKR- 105 (504)
Q Consensus 49 ~~~~yDav~~~a~a~~~~~~~~~~~~~~~~c~~~~~~~~G~~l~~~l~~----------------------~~i~~~~~- 105 (504)
...+||||.++|+||++|..... ......|....++ .+..|..+|++ |+|+|...
T Consensus 376 ~~~vy~AVyavA~ALh~m~~~~~-~~~~~~c~~~~~~-~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~~~~YdI~n~~~~ 453 (481)
T 3mq4_A 376 VQFVIDAVYAMAHALHHMNKDLC-ADYRGVCPEMEQA-GGKKLLKYIRNVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTT 453 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-C----CCHHHHTS-CHHHHHHHHHTCEEECTTSSEEECCTTSCCCCEEEEEEEC--
T ss_pred hhhHHHHHHHHHHHHHHHHHhhC-CCCCCCCCCCCCc-CHHHHHHHHhcceeecCCCCEEEECCCCCCceeEEEEEEEEC
Confidence 34699999999999999863211 1112356432222 45678889887 88888752
Q ss_pred -c---ceeeeeEec
Q psy1412 106 -E---ELRKVGHWT 115 (504)
Q Consensus 106 -~---~~~~vg~W~ 115 (504)
. .+++||.|+
T Consensus 454 ~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 454 NTSNPGYRLIGQWT 467 (481)
T ss_dssp ---CCCEEEEEEEE
T ss_pred CCCcEEEEEEEEEc
Confidence 1 357899997
No 67
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=92.05 E-value=0.1 Score=51.70 Aligned_cols=38 Identities=8% Similarity=0.053 Sum_probs=25.6
Q ss_pred hhhhhcccccCCCccccccccccchhhhHHHHHHHHHHHhh
Q psy1412 27 SCDLEVPWRDGLSLYNYINTAEPALMYDSVHVLAAGLALLD 67 (504)
Q Consensus 27 ~~~~~~~W~~g~~~~~~i~~~~~~~~yDav~~~a~a~~~~~ 67 (504)
.+.|.++|...... .... .++++|||++++++|+++..
T Consensus 267 ~~~f~~~~~~~~~~--~p~~-~~~~~Yda~~~~a~Al~~ag 304 (387)
T 3i45_A 267 HRAFVEAYRARWKE--DPFV-GSLVGYNTLTAMAVAFEKAG 304 (387)
T ss_dssp HHHHHHHHHHHHSS--CCCH-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCC--CCCc-HHHHHHHHHHHHHHHHHHhC
Confidence 66666666431111 1122 67899999999999999874
No 68
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=91.87 E-value=1.1 Score=43.34 Aligned_cols=51 Identities=8% Similarity=0.041 Sum_probs=37.5
Q ss_pred ccceehhHHHHHHHHHH----cCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceee
Q psy1412 161 AMFEGFCIDLLKSIAAQ----VGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTI 223 (504)
Q Consensus 161 ~~~~G~~idll~~la~~----l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~ti 223 (504)
+.+..+...|.+.+.+. +|.++++.. .+...+.+..|.+|++|+++....+
T Consensus 43 G~~~~~~~~la~~l~~~~~~~~g~~v~v~~------------~~g~~~~i~~l~~g~~D~~~~~~~~ 97 (327)
T 4ddd_A 43 GVYYPIGGSICRFIASDYGKDNKIICSISS------------TTGSVYNLNSIRYSNMDISIVQSDL 97 (327)
T ss_dssp SSHHHHHHHHHHHHHHHHGGGTSEEEEEEC------------CCCHHHHHHHHHTTSCSEEEEEHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCCCeEEEEEe------------cCcHHHHHHHHHcCCCcEEEECcHH
Confidence 44556677788888887 688877762 2345678899999999999876543
No 69
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=91.39 E-value=0.99 Score=42.43 Aligned_cols=83 Identities=18% Similarity=0.102 Sum_probs=53.0
Q ss_pred CCeEEEEEeecccCeEEEecCCCCCCCccceehhHHHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHhhc
Q psy1412 134 NNVTLIVMTREEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDK 212 (504)
Q Consensus 134 ~~~~l~V~~~~~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g 212 (504)
..++|+|++.... ...+-.+++..+.++. +.++++. .+....++..|.+|
T Consensus 93 ~~g~l~i~~~~~~----------------~~~~l~~~l~~f~~~~P~i~i~l~-------------~~~~~~~~~~l~~g 143 (306)
T 3fzv_A 93 IAGQIDIGCFETV----------------APLYLPGLIAGFRQAYPGVEIRIR-------------DGEQQELVQGLTSG 143 (306)
T ss_dssp CCEEEEEEEEGGG----------------HHHHHHHHHHHHHHHCTTEEEEEE-------------EECHHHHHHHHHHT
T ss_pred CCceEEEEechhh----------------hHHHHHHHHHHHHHHCCCeEEEEE-------------eCCHHHHHHHHHCC
Confidence 4578999985321 1245567888888776 5667766 33567889999999
Q ss_pred cccceecceeeecccceeeeecccee-eccEEEEEEcc
Q psy1412 213 KADLAVASMTINYARESVIDFTKPFM-NLGIGILFKVP 249 (504)
Q Consensus 213 ~~D~av~~~tit~~R~~~vdFs~p~~-~~g~~ilv~~~ 249 (504)
++|+++....... ..+.+ .|.. ....+++++..
T Consensus 144 ~~Dl~i~~~~~~~---~~l~~-~~l~~~~~~~~v~~~~ 177 (306)
T 3fzv_A 144 RFDLAFLYEHDLD---STIET-EPLMPPQRPHALLPEG 177 (306)
T ss_dssp SCSEEEECSSSCC---TTEEE-EESSCCBCCEEEEETT
T ss_pred CccEEEEeccccc---cccce-eeeeeccccEEEecCC
Confidence 9999986432222 22332 4555 66667777644
No 70
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=90.45 E-value=2 Score=37.43 Aligned_cols=68 Identities=12% Similarity=-0.017 Sum_probs=40.8
Q ss_pred cccCChHHHHHhhhcCC-eEEEeecchhhhhhhcCCccEEc-CCccC--CcceEEEecCCCCCchHHHHHHHhh
Q psy1412 408 VFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNCNLTQI-GGLLD--SKGYGIATPKGSPWRDRISLAILEL 477 (504)
Q Consensus 408 ~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c~l~~v-g~~~~--~~~~g~a~~k~Spl~~~in~ail~l 477 (504)
..+.+.+..++.|.+|. .+++-+.....+.... .+..+ ..... ...++++.+|+.+....+...+..+
T Consensus 132 ~~~~~~~~~~~~v~~g~Gi~~lp~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 203 (213)
T 3hhf_B 132 FTASSGEILRSLCLSGCGIVCLSDFLVDNDIAEG--KLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFL 203 (213)
T ss_dssp SEESSHHHHHHHHHTTSCBEEEEHHHHHHHHHHT--SSEEECTTTBCCCCEEEEEEEEGGGGGCHHHHHHHHHH
T ss_pred eeeCCHHHHHHHHHcCCcEEEeeHHHhhHHHhcC--CcEEecCCCCCCceeeEEEEEcCCCCCChHHHHHHHHH
Confidence 44678888899999998 6666555444443332 33333 22222 4578899998866555555544444
No 71
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=89.81 E-value=1.5 Score=41.34 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=45.8
Q ss_pred ehhHHHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecc---eeeecccceeeeeccceeec
Q psy1412 165 GFCIDLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVAS---MTINYARESVIDFTKPFMNL 240 (504)
Q Consensus 165 G~~idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~---~tit~~R~~~vdFs~p~~~~ 240 (504)
.+-.+++..+.++. +.++++. .+....++..|.+|++|+++.. .... ...+. +.|..+.
T Consensus 114 ~~l~~~l~~f~~~~P~i~i~l~-------------~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~---~~~l~-~~~l~~~ 176 (310)
T 2esn_A 114 ALLPPLMNRLQHSAPGVRLRLV-------------NAERKLSVEALASGRIDFALGYDEEHERL---PEGIQ-AHDWFAD 176 (310)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEE-------------CCSSSCCHHHHHHTSSSEEEECCSTTCCC---CTTEE-EEEEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEEEE-------------eCCcccHHHHHHcCCCCEEEecCcccccC---CcCcc-eeeeecc
Confidence 44557778887776 4566665 3345668899999999999865 3222 12233 2578888
Q ss_pred cEEEEEEcc
Q psy1412 241 GIGILFKVP 249 (504)
Q Consensus 241 g~~ilv~~~ 249 (504)
.++++++..
T Consensus 177 ~~~~v~~~~ 185 (310)
T 2esn_A 177 RYVVVARRD 185 (310)
T ss_dssp CEEEEEESS
T ss_pred ceEEEEeCC
Confidence 888888754
No 72
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=89.41 E-value=4.8 Score=35.73 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=46.4
Q ss_pred ehhHHHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccceeeeeccceeeccEE
Q psy1412 165 GFCIDLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIG 243 (504)
Q Consensus 165 G~~idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ 243 (504)
.+-.+++..+.++. +.++++. .+..+.++..|.+|++|++++.... .....+.+ .|.....++
T Consensus 27 ~~l~~~l~~f~~~~P~v~l~l~-------------~~~~~~~~~~l~~g~~Dl~i~~~~~--~~~~~l~~-~~l~~~~~~ 90 (228)
T 2fyi_A 27 YSLPEVIKAFRELFPEVRLELI-------------QGTPQEIATLLQNGEADIGIASERL--SNDPQLVA-FPWFRWHHS 90 (228)
T ss_dssp HTHHHHHHHHHHHCTTEEEEEE-------------ECCHHHHHHHHHHTSCSEEEESSSS--TTCTTEEE-EEEEEECEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEE-------------eCCHHHHHHHHHcCCccEEEEeccc--CCCCCceE-EEeeecceE
Confidence 44567888888877 4566665 3456789999999999999864221 11122332 578888888
Q ss_pred EEEEcc
Q psy1412 244 ILFKVP 249 (504)
Q Consensus 244 ilv~~~ 249 (504)
+++++.
T Consensus 91 ~v~~~~ 96 (228)
T 2fyi_A 91 LLVPHD 96 (228)
T ss_dssp EEEETT
T ss_pred EEecCC
Confidence 888754
No 73
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=89.18 E-value=0.46 Score=45.18 Aligned_cols=78 Identities=9% Similarity=0.040 Sum_probs=59.3
Q ss_pred ccceehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecc-eeeec---ccceeeeeccc
Q psy1412 161 AMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVAS-MTINY---ARESVIDFTKP 236 (504)
Q Consensus 161 ~~~~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~-~tit~---~R~~~vdFs~p 236 (504)
..+.|+.+.+-+-+.++.|++++++.. +....++..|..|++|+++++ ..+.. ++...+.+..+
T Consensus 15 ~~~~~~~va~~~g~~~~~Gl~v~~~~~------------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~ 82 (302)
T 3ix1_A 15 AVHTFLYVAIENGYFAEEGLDVDIVFP------------TNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASV 82 (302)
T ss_dssp GGGHHHHHHHHTTHHHHTTEEEEEECC------------SSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEE
T ss_pred cccHHHHHHHHcChHHHcCCcEEEecC------------CCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEE
Confidence 456789888888899999999998732 234579999999999999887 33333 33446777777
Q ss_pred eeeccEEEEEEccC
Q psy1412 237 FMNLGIGILFKVPT 250 (504)
Q Consensus 237 ~~~~g~~ilv~~~~ 250 (504)
+...+..+++++.+
T Consensus 83 ~~~~~~~l~~~~~s 96 (302)
T 3ix1_A 83 VRSPLNHVMFLAEQ 96 (302)
T ss_dssp ECSCCEEEEEEGGG
T ss_pred eccCCEEEEEECCC
Confidence 77778899998754
No 74
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=88.98 E-value=0.4 Score=46.89 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=18.1
Q ss_pred ccchhhhHHHHHHHHHHHhh
Q psy1412 48 EPALMYDSVHVLAAGLALLD 67 (504)
Q Consensus 48 ~~~~~yDav~~~a~a~~~~~ 67 (504)
.++++|||++++++|+++..
T Consensus 289 ~~~~~yda~~~~~~al~~ag 308 (366)
T 3td9_A 289 LNALGYDAYMVLLDAIERAG 308 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHhC
Confidence 68899999999999999874
No 75
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=88.80 E-value=0.3 Score=38.68 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhhCCCCccCCCCCCCCCCcccCcccchhHHHHHHHHhhccCC-CCCCcccccccceehcc
Q psy1412 274 AYLLVSFTLFVMARFSPYEWSNPHPCLAESPIVENQFSVSNSFWFITGTFLRQGS-GLNPKVLQQGSSRTLDT 345 (504)
Q Consensus 274 ~~~~v~~~~~~i~r~~p~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~~~l~~qg~-~~~p~~~~~~s~R~v~~ 345 (504)
.+++.+++++.+++..|.. +..++.+++|+++.++...|. ++.|.+. .+|++..
T Consensus 18 ~~~~~a~~~~~~E~~~~~~---------------~~~~~~~a~y~~~~T~tTvGyGDi~P~t~---~gr~~~~ 72 (103)
T 2k1e_A 18 VLEEASKKAVEAERGAPGA---------------ALISYPDAIWWSVETATTVGYGDRYPVTE---EGRKVAE 72 (103)
T ss_dssp HHHHHHHHHHHHHTTSTTC---------------CCCCGGGTTTTTTGGGGCCSCCSSCCCSS---SCTHHHH
T ss_pred HHHHHHHhhhhhccCCCCc---------------ccccHHHHHHHHHHHHhcccCCCCCCCCh---hHHHHHH
Confidence 3334556677777654211 334689999999999999995 7899988 9999876
No 76
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=88.10 E-value=1.5 Score=39.02 Aligned_cols=69 Identities=10% Similarity=0.121 Sum_probs=48.8
Q ss_pred ehhHHHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccceeeeeccceeeccEE
Q psy1412 165 GFCIDLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIG 243 (504)
Q Consensus 165 G~~idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ 243 (504)
.+-..++.++.++. +.++++. .++...++..|.+|++|++++.... ....+++ .|..+..++
T Consensus 21 ~~lp~~l~~f~~~~P~v~l~l~-------------~~~~~~l~~~L~~g~iDl~i~~~~~---~~~~l~~-~~l~~~~~~ 83 (218)
T 2y7p_A 21 YFMPPLMEALAQRAPHIQISTL-------------RPNAGNLKEDMESGAVDLALGLLPE---LQTGFFQ-RRLFRHRYV 83 (218)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEE-------------CCCTTTHHHHHHHTSSCEEEECCTT---CCTTEEE-EEEEEECEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEE-------------eCCcccHHHHHhCCCceEEEecCCC---CCcceeE-EEeeeccEE
Confidence 45567888888776 5667766 3456789999999999999864321 1223444 588899999
Q ss_pred EEEEccC
Q psy1412 244 ILFKVPT 250 (504)
Q Consensus 244 ilv~~~~ 250 (504)
++++...
T Consensus 84 ~v~~~~h 90 (218)
T 2y7p_A 84 CMFRKDH 90 (218)
T ss_dssp EEEETTC
T ss_pred EEEcCCC
Confidence 9988654
No 77
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=88.08 E-value=5.9 Score=37.05 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=47.4
Q ss_pred ehhHHHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccceeeeeccceeeccEE
Q psy1412 165 GFCIDLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIG 243 (504)
Q Consensus 165 G~~idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ 243 (504)
.+-..++..+.++. +.++++.. +..+.++..|.+|++|++++...... ....+. +.|.....++
T Consensus 105 ~~l~~~l~~f~~~~P~i~i~l~~-------------~~~~~~~~~l~~g~~Dlai~~~~~~~-~~~~l~-~~~L~~~~~~ 169 (305)
T 3fxq_A 105 AALPLALASFAREFPDVTVNVRD-------------GMYPAVSPQLRDGTLDFALTAAHKHD-IDTDLE-AQPLYVSDVV 169 (305)
T ss_dssp THHHHHHHHHHHHCTTCEEEEEE-------------CCTTTTHHHHHHTSSSEEEEECCGGG-SCTTEE-EEEEEECCEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEE-------------CCHHHHHHHHHcCCCCEEEecCCCCC-CccCee-EEEeecCcEE
Confidence 45567888887776 56777763 34567899999999999986433221 112233 3688888899
Q ss_pred EEEEcc
Q psy1412 244 ILFKVP 249 (504)
Q Consensus 244 ilv~~~ 249 (504)
++++..
T Consensus 170 ~v~~~~ 175 (305)
T 3fxq_A 170 IVGQRQ 175 (305)
T ss_dssp EEEETT
T ss_pred EEEcCC
Confidence 988754
No 78
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=87.96 E-value=0.094 Score=29.78 Aligned_cols=21 Identities=29% Similarity=0.760 Sum_probs=17.2
Q ss_pred cCcccchhHHHHHHHHhhccC
Q psy1412 307 ENQFSVSNSFWFITGTFLRQG 327 (504)
Q Consensus 307 ~~~~~l~~~~w~~~~~l~~qg 327 (504)
+..+++..++||+|++++..|
T Consensus 4 ~~~~~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 4 GDALTLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred ccceehhhhHHHhhHhheecc
Confidence 356789999999999998654
No 79
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=87.55 E-value=0.81 Score=37.37 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=30.0
Q ss_pred CcccchhHHHHHHHHhhccCC-CCCCcccccccceehcc
Q psy1412 308 NQFSVSNSFWFITGTFLRQGS-GLNPKVLQQGSSRTLDT 345 (504)
Q Consensus 308 ~~~~l~~~~w~~~~~l~~qg~-~~~p~~~~~~s~R~v~~ 345 (504)
+..++.+++|+++.++...|. |..|.+. .+|++..
T Consensus 58 ~~~~~~~a~y~~~~T~tTvGyGDi~P~t~---~gr~~~~ 93 (122)
T 2ih3_C 58 QLITYPRALWWACETATTVAYGDLYPVTL---WGRLVAV 93 (122)
T ss_dssp CCCSHHHHHHHHHHHHTTCCCSSSCCCSH---HHHHHHH
T ss_pred ccCccccchhheeeeeeeeecCCCCCCCc---cHHHHHH
Confidence 345789999999999999995 7899988 9999876
No 80
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=87.30 E-value=14 Score=32.63 Aligned_cols=68 Identities=13% Similarity=0.188 Sum_probs=46.8
Q ss_pred ehhHHHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccceeeeeccceeeccEE
Q psy1412 165 GFCIDLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIG 243 (504)
Q Consensus 165 G~~idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ 243 (504)
.+-..++..+.++. +.++++.. +..+.++..|.+|++|+++...... ...+.+ .|..+..++
T Consensus 43 ~~l~~~l~~f~~~~P~v~l~~~~-------------~~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~~-~~l~~~~~~ 105 (238)
T 2hxr_A 43 YFIGPLMADFYARYPSITLQLQE-------------MSQEKIEDMLCRDELDVGIAFAPVH---SPELEA-IPLLTESLA 105 (238)
T ss_dssp TTHHHHHHHHHHHCTTSCEEEEE-------------CCHHHHHHHHHTTSCSEEEEESSCC---CTTEEE-EEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEEEE-------------CCHHHHHHHHHcCCCcEEEEcCCCC---ccccee-eeeccCcEE
Confidence 45567888888876 46677763 3457789999999999998643221 222333 578888888
Q ss_pred EEEEcc
Q psy1412 244 ILFKVP 249 (504)
Q Consensus 244 ilv~~~ 249 (504)
+++++.
T Consensus 106 ~v~~~~ 111 (238)
T 2hxr_A 106 LVVAQH 111 (238)
T ss_dssp EEEETT
T ss_pred EEEcCC
Confidence 888754
No 81
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=86.85 E-value=14 Score=31.83 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=45.9
Q ss_pred ehhHHHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccceeeeeccceeeccEE
Q psy1412 165 GFCIDLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIG 243 (504)
Q Consensus 165 G~~idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ 243 (504)
.+-.+++..+.++. +.++++. .+....++.+|.+|++|+++...... ...+. +.+..+..++
T Consensus 18 ~~l~~~l~~f~~~~P~i~i~l~-------------~~~~~~l~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~ 80 (209)
T 2ql3_A 18 TILPSMLYAFTAEYPRASVEFR-------------EDTQNRLRTQLEGGELDVAIVYDLDL---SPEWQ-TVPLMTREPM 80 (209)
T ss_dssp TTHHHHHHHHHHHCTTEEEEEE-------------ECCHHHHHHHHHTTSCSEEEEESSSC---CTTEE-EEEEEEECCE
T ss_pred hhHHHHHHHHHHHCCCceEEEE-------------ECcHHHHHHHHHcCCccEEEEecCCC---CCCce-EEEeecCceE
Confidence 44567888888877 4566665 33567899999999999998543211 12233 2577788888
Q ss_pred EEEEcc
Q psy1412 244 ILFKVP 249 (504)
Q Consensus 244 ilv~~~ 249 (504)
++++..
T Consensus 81 ~v~~~~ 86 (209)
T 2ql3_A 81 VVLGAE 86 (209)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 888744
No 82
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=85.12 E-value=1.2 Score=37.99 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=29.0
Q ss_pred ccchhHHHHHHHHhhccCC-CCCCcccccccceehcc
Q psy1412 310 FSVSNSFWFITGTFLRQGS-GLNPKVLQQGSSRTLDT 345 (504)
Q Consensus 310 ~~l~~~~w~~~~~l~~qg~-~~~p~~~~~~s~R~v~~ 345 (504)
.++.+++|+++.++...|. +..|.+. .+|++++
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~---~gr~~~~ 116 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTL---WGRCVAV 116 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSH---HHHHHHH
T ss_pred CcccceeheeeeeeecccCCCCCCCCh---hHHHHHH
Confidence 3689999999999999996 7799988 9999876
No 83
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=84.41 E-value=9.8 Score=34.47 Aligned_cols=72 Identities=11% Similarity=0.156 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhcc-ccceecceeeecc---cceeee--eccceee
Q psy1412 166 FCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKK-ADLAVASMTINYA---RESVID--FTKPFMN 239 (504)
Q Consensus 166 ~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~-~D~av~~~tit~~---R~~~vd--Fs~p~~~ 239 (504)
..-++++++.++-|.++++..- +-..++.++.+|. +|+.++.-.-..+ ....+. -..||..
T Consensus 20 ~~~~l~~~Fe~~~gi~V~~~~~-------------~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~~~~~~~~~~~~ 86 (237)
T 3r26_A 20 AMQDIATQFKKEKGVDVVSSFA-------------SSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLG 86 (237)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEE-------------CHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEEEEE
T ss_pred HHHHHHHHHHhccCCeEEEEEC-------------CHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCCCCCceeeeEc
Confidence 3346777777778888887632 2345888888887 8988763211111 122232 2358888
Q ss_pred ccEEEEEEccC
Q psy1412 240 LGIGILFKVPT 250 (504)
Q Consensus 240 ~g~~ilv~~~~ 250 (504)
..+++++++..
T Consensus 87 ~~lvl~~~~~~ 97 (237)
T 3r26_A 87 NSLVVVAPKAS 97 (237)
T ss_dssp ECEEEEEESSC
T ss_pred ceEEEEEeCCC
Confidence 99999998754
No 84
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=83.52 E-value=1.4 Score=36.73 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=30.3
Q ss_pred CcccchhHHHHHHHHhhccCC-CCCCcccccccceehcc
Q psy1412 308 NQFSVSNSFWFITGTFLRQGS-GLNPKVLQQGSSRTLDT 345 (504)
Q Consensus 308 ~~~~l~~~~w~~~~~l~~qg~-~~~p~~~~~~s~R~v~~ 345 (504)
...++.+++||++.++...|. ++.|.+. .+|++++
T Consensus 37 ~~~~~~~a~yf~~~T~tTvGyGd~~P~t~---~~r~~~~ 72 (139)
T 3eff_K 37 QLITYPRALWWSVETATTVGYGDLYPVTL---WGRLVAV 72 (139)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCSSSCCCSS---HHHHHHH
T ss_pred ccCCHHHHHHHHheeeecccCCCCcCCCc---CHHHHHH
Confidence 346789999999999999996 7899888 9999877
No 85
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=83.30 E-value=0.92 Score=47.41 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=18.1
Q ss_pred ccchhhhHHHHHHHHHHHhh
Q psy1412 48 EPALMYDSVHVLAAGLALLD 67 (504)
Q Consensus 48 ~~~~~yDav~~~a~a~~~~~ 67 (504)
.+..+||||+++|+||+++.
T Consensus 365 ~~~~~YdAVya~A~AL~~~~ 384 (555)
T 2e4u_A 365 KIMFVVNAVYAMAHALHKMQ 384 (555)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHH
Confidence 56789999999999999985
No 86
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=83.25 E-value=6.2 Score=37.42 Aligned_cols=80 Identities=13% Similarity=0.047 Sum_probs=48.3
Q ss_pred ccCChHHHHHhhhcCC-eEEEeecchhhhhhhcCCccEEcC--CccCCcceEEEecCCCCCchHHHHHHHhhhccChhHH
Q psy1412 409 FVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNCNLTQIG--GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQM 485 (504)
Q Consensus 409 ~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c~l~~vg--~~~~~~~~g~a~~k~Spl~~~in~ail~l~e~G~l~~ 485 (504)
.+.+.+..++.|.+|. .+++-+... .... ..++..+. .......++++.+++.+....+...+..+.+.- -+.
T Consensus 223 ~~~~~~~~~~lv~~G~Giailp~~~~-~~~~--~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~fi~~l~~~~-~~~ 298 (324)
T 1al3_A 223 TATDADVIKTYVRLGLGVGVIASMAV-DPVS--DPDLVKLDANGIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHL-TRD 298 (324)
T ss_dssp EESSHHHHHHHHHHTSCEEEEEGGGC-CTTT--CTTSEEEECBTTBCCEEEEEEEETTCCCCHHHHHHHHHHCTTC-CHH
T ss_pred EeCCHHHHHHHHHhCCCeEEechhhh-hhhc--cCCeEEEECCCCCcceEEEEEEeCCCCCCHHHHHHHHHHHHHh-ccc
Confidence 3567788888888888 566644322 2211 23455543 233456788999999887777777776666542 334
Q ss_pred HHHhhcc
Q psy1412 486 LYDKWWK 492 (504)
Q Consensus 486 l~~kw~~ 492 (504)
+.+++..
T Consensus 299 ~~~~~~~ 305 (324)
T 1al3_A 299 VVDTAVA 305 (324)
T ss_dssp HHHHHHH
T ss_pred hhhhhhh
Confidence 4444443
No 87
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=81.41 E-value=2 Score=41.85 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=27.3
Q ss_pred ccchhhhHHHHHHHHHHHhhhcCCcccccCCCCCCCcccCchhHHHHhhhc
Q psy1412 48 EPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGLSLYNYINTL 98 (504)
Q Consensus 48 ~~~~~yDav~~~a~a~~~~~~~~~~~~~~~~c~~~~~~~~G~~l~~~l~~~ 98 (504)
.++.+|||++++++|+++... .+.++..+.++|++.
T Consensus 289 ~~~~~yda~~~~~~al~~~g~---------------~~~~~~~l~~~l~~~ 324 (375)
T 4evq_A 289 FAVQGWDAGQLLDAGVKAVGG---------------DVAKRKELNAAMAAA 324 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT---------------CTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhCC---------------CCCCHHHHHHHHhcC
Confidence 678999999999999987631 124567777777764
No 88
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=81.17 E-value=4.1 Score=38.55 Aligned_cols=68 Identities=10% Similarity=0.133 Sum_probs=45.7
Q ss_pred ehhHHHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccceeeeeccceeeccEE
Q psy1412 165 GFCIDLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIG 243 (504)
Q Consensus 165 G~~idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ 243 (504)
.+-..++..+.+.. +.++++. .+....++..|.+|++|+++...... ...+. ..|..+..++
T Consensus 118 ~~l~~~l~~f~~~~P~v~l~l~-------------~~~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~ 180 (315)
T 1uth_A 118 YFMPPLMEALAQRAPHIQISTL-------------RPNAGNLKEDMESGAVDLALGLLPEL---QTGFF-QRRLFRHRYV 180 (315)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEE-------------CTTSSCHHHHHHHTSCCEEEECCTTC---CTTEE-EEEEEEECEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEE-------------eCCcccHHHHHHCCCCCEEEecCCCC---CCCce-EEEeeccceE
Confidence 34556778787776 4666665 34556799999999999998643221 12233 3577888888
Q ss_pred EEEEcc
Q psy1412 244 ILFKVP 249 (504)
Q Consensus 244 ilv~~~ 249 (504)
++++..
T Consensus 181 ~v~~~~ 186 (315)
T 1uth_A 181 CMFRKD 186 (315)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 888754
No 89
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=80.61 E-value=1.2 Score=45.71 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=17.8
Q ss_pred ccchhhhHHHHHHHHHHHhhh
Q psy1412 48 EPALMYDSVHVLAAGLALLDK 68 (504)
Q Consensus 48 ~~~~~yDav~~~a~a~~~~~~ 68 (504)
....+||||.++|+||++|..
T Consensus 364 ~~~~vy~AVyavA~ALh~m~~ 384 (479)
T 3sm9_A 364 KIMFVVNAVYAMAHALHKMQR 384 (479)
T ss_dssp THHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHH
Confidence 346799999999999999863
No 90
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=80.31 E-value=29 Score=32.32 Aligned_cols=68 Identities=10% Similarity=0.122 Sum_probs=47.2
Q ss_pred ehhHHHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccceeeeeccceeeccEE
Q psy1412 165 GFCIDLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIG 243 (504)
Q Consensus 165 G~~idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ 243 (504)
.+-.+++..+.+.. +.++++. .+..+.++..|.+|++|+++....... ..+. +.|.....++
T Consensus 103 ~~l~~~l~~f~~~~P~v~i~l~-------------~~~~~~~~~~l~~g~~Dlai~~~~~~~---~~l~-~~~L~~~~~~ 165 (312)
T 2h9b_A 103 GLLPRIIHLYRQAHPNLRIELY-------------EMGTKAQTEALKEGRIDAGFGRLKISD---PAIK-HSLLRNERLM 165 (312)
T ss_dssp TTHHHHHHHHHHTCTTCEEEEE-------------ECCHHHHHHHHHTTSCSEEEESSCCCC---TTEE-EEEEEEEEEE
T ss_pred hhHHHHHHHHHHHCCCcEEEEE-------------eCCHHHHHHHHHcCCCCEEEEeCCCCC---CCce-EEEeecceEE
Confidence 45567888888776 4667766 335678999999999999986543322 1233 3578888888
Q ss_pred EEEEcc
Q psy1412 244 ILFKVP 249 (504)
Q Consensus 244 ilv~~~ 249 (504)
++++..
T Consensus 166 ~v~~~~ 171 (312)
T 2h9b_A 166 VAVHAS 171 (312)
T ss_dssp EEEETT
T ss_pred EEEcCC
Confidence 888754
No 91
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=78.23 E-value=11 Score=34.61 Aligned_cols=83 Identities=10% Similarity=-0.023 Sum_probs=55.1
Q ss_pred CCeEEEEEeecccCeEEEecCCCCCCCccceehhHHHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHhhc
Q psy1412 134 NNVTLIVMTREEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDK 212 (504)
Q Consensus 134 ~~~~l~V~~~~~~P~~~~~~~~~~~~~~~~~G~~idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g 212 (504)
..++|+|++.... ...+-.+++..+.++. +.++++.. +....++..|.+|
T Consensus 89 ~~g~l~Ig~~~~~----------------~~~~l~~~l~~f~~~~P~i~l~~~~-------------~~~~~~~~~l~~g 139 (294)
T 1ixc_A 89 DVGELSVAYFGTP----------------IYRSLPLLLRAFLTSTPTATVSLTH-------------MTKDEQVEGLLAG 139 (294)
T ss_dssp CCEEEEEEECSGG----------------GGTHHHHHHHHHHHHCTTEEEEEEE-------------CCHHHHHHHHHHT
T ss_pred CCceEEEEEccch----------------hHHHHHHHHHHHHHHCCCcEEEEEe-------------CCHHHHHHHHHCC
Confidence 3567899875321 1245567888888876 45666652 3456789999999
Q ss_pred cccceecceeeecccceeeeeccceeeccEEEEEEcc
Q psy1412 213 KADLAVASMTINYARESVIDFTKPFMNLGIGILFKVP 249 (504)
Q Consensus 213 ~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~ 249 (504)
++|+++...... ...+. +.|.....++++++..
T Consensus 140 ~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~~ 172 (294)
T 1ixc_A 140 TIHVGFSRFFPR---HPGIE-IVNIAQEDLYLAVHRS 172 (294)
T ss_dssp SCSEEEESCCCC---CTTEE-EEEEEEEEEEEEEEGG
T ss_pred CccEEEEecCCC---CCCce-EEEEeeccEEEEEeCC
Confidence 999998654322 22233 2578888888888754
No 92
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=77.87 E-value=2.5 Score=40.71 Aligned_cols=37 Identities=8% Similarity=0.141 Sum_probs=25.4
Q ss_pred hhhhhcccccCCCccccccccccchhhhHHHHHHHHHHHhh
Q psy1412 27 SCDLEVPWRDGLSLYNYINTAEPALMYDSVHVLAAGLALLD 67 (504)
Q Consensus 27 ~~~~~~~W~~g~~~~~~i~~~~~~~~yDav~~~a~a~~~~~ 67 (504)
...+.++|... .. .... .++++|||++++++|+++..
T Consensus 258 ~~~f~~~~~~~-~~--~p~~-~~~~~yda~~~~~~al~~ag 294 (356)
T 3ipc_A 258 NKELVEKFKAA-GF--NPEA-YTLYSYAAMQAIAGAAKAAG 294 (356)
T ss_dssp GHHHHHHHHHT-TC--CCCT-THHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-CC--Ccch-hHHHHHHHHHHHHHHHHHhC
Confidence 55666666443 11 2222 68899999999999999864
No 93
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=77.80 E-value=45 Score=31.06 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=47.3
Q ss_pred ehhHHHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccceeeeeccceeeccEE
Q psy1412 165 GFCIDLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIG 243 (504)
Q Consensus 165 G~~idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ 243 (504)
.+-.+++..+.+.. +.++++. .+..+.++..|.+|++|+++....... ..+. ..|.....++
T Consensus 103 ~~l~~~l~~f~~~~P~v~l~l~-------------~~~~~~~~~~l~~g~~Dlai~~~~~~~---~~l~-~~~L~~~~~~ 165 (313)
T 2h98_A 103 GLLPEIIYLFRQQNPEIHIELI-------------ECGTKDQINALKQGKIDLGFGRLKITD---PAIR-RIMLHKEQLK 165 (313)
T ss_dssp TTHHHHHHHHHHHCTTSEEEEE-------------ECCHHHHHHHHHHTSCSEEEESSCCCC---TTEE-EEEEEEEEEE
T ss_pred hHHHHHHHHHHHHCCCeEEEEE-------------eCChHHHHHHHHcCCCCEEEEeCCCCC---CCee-EEEeeeCcEE
Confidence 45567888888776 5677776 235678999999999999986443221 2233 3578888888
Q ss_pred EEEEcc
Q psy1412 244 ILFKVP 249 (504)
Q Consensus 244 ilv~~~ 249 (504)
++++..
T Consensus 166 ~v~~~~ 171 (313)
T 2h98_A 166 LAIHKH 171 (313)
T ss_dssp EEEETT
T ss_pred EEEcCC
Confidence 888754
No 94
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=74.73 E-value=3.7 Score=34.12 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=29.2
Q ss_pred ccchhHHHHHHHHhhccCC-CCCCcccccccceehcc
Q psy1412 310 FSVSNSFWFITGTFLRQGS-GLNPKVLQQGSSRTLDT 345 (504)
Q Consensus 310 ~~l~~~~w~~~~~l~~qg~-~~~p~~~~~~s~R~v~~ 345 (504)
.++.+++|+++.++...|. |+.|.+. .+|+++.
T Consensus 42 ~~~~~a~y~~~~T~tTvGyGDi~P~t~---~gr~~~~ 75 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYGDIVPVTP---IGRILAS 75 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSH---HHHHHHH
T ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCH---hHHHHHH
Confidence 3688999999999999996 7899988 9998877
No 95
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=73.68 E-value=28 Score=31.84 Aligned_cols=71 Identities=4% Similarity=0.093 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhcc-ccceeccee--ee-cccceeee--eccceeec
Q psy1412 167 CIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKK-ADLAVASMT--IN-YARESVID--FTKPFMNL 240 (504)
Q Consensus 167 ~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~-~D~av~~~t--it-~~R~~~vd--Fs~p~~~~ 240 (504)
.-+|++++.++.|.++++..- .-..++.++.+|. +|+.++.-. +. ......++ -..+|...
T Consensus 37 ~~~l~~~Fe~~~gi~V~~~~~-------------~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~ 103 (253)
T 3gzg_A 37 MDEAATAYEKATGTPVRVSYA-------------ASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGN 103 (253)
T ss_dssp HHHHHHHHHHHHSCCEEEEEE-------------CHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEE
T ss_pred HHHHHHHHHHHhCCeEEEEEC-------------ChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEee
Confidence 346777777777888887632 2345888888886 898876421 11 11122222 12577888
Q ss_pred cEEEEEEccC
Q psy1412 241 GIGILFKVPT 250 (504)
Q Consensus 241 g~~ilv~~~~ 250 (504)
.+++++++..
T Consensus 104 ~lvl~~~~~~ 113 (253)
T 3gzg_A 104 TLVLVAPASS 113 (253)
T ss_dssp CEEEEEETTC
T ss_pred EEEEEEECCC
Confidence 9999998754
No 96
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=69.58 E-value=6.8 Score=29.18 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=28.0
Q ss_pred cchhHHHHHHHHhhccCC-CCCCcccccccceehcc
Q psy1412 311 SVSNSFWFITGTFLRQGS-GLNPKVLQQGSSRTLDT 345 (504)
Q Consensus 311 ~l~~~~w~~~~~l~~qg~-~~~p~~~~~~s~R~v~~ 345 (504)
++.+++|+++.++...|. |..|.+. .+|++..
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~---~~r~~~~ 60 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTP---LGMYFTC 60 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSH---HHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCc---cHHHHHH
Confidence 578999999999999996 6899888 8998766
No 97
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=68.12 E-value=7.4 Score=30.07 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=28.9
Q ss_pred ccchhHHHHHHHHhhccCC-CCCCcccccccceehcc
Q psy1412 310 FSVSNSFWFITGTFLRQGS-GLNPKVLQQGSSRTLDT 345 (504)
Q Consensus 310 ~~l~~~~w~~~~~l~~qg~-~~~p~~~~~~s~R~v~~ 345 (504)
+++.+++|+++.++...|. +..|.+. .+|++..
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~---~gr~~~~ 64 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQTD---FGKIFTI 64 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSH---HHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCc---cHHHHHH
Confidence 4689999999999999997 6799888 9999876
No 98
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=67.92 E-value=6.5 Score=32.98 Aligned_cols=33 Identities=12% Similarity=0.283 Sum_probs=29.1
Q ss_pred ccchhHHHHHHHHhhccCC-CCCCcccccccceehcc
Q psy1412 310 FSVSNSFWFITGTFLRQGS-GLNPKVLQQGSSRTLDT 345 (504)
Q Consensus 310 ~~l~~~~w~~~~~l~~qg~-~~~p~~~~~~s~R~v~~ 345 (504)
+++.+++|+++.++...|. ++.|.+. .+|++..
T Consensus 51 ~~~~~a~y~~~~t~tTvGyGd~~p~t~---~~r~~~~ 84 (148)
T 3vou_A 51 LRPLDALYFSVVTLTTVGDGNFSPQTD---FGKVFTI 84 (148)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCCCCSH---HHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCc---cHHHHHH
Confidence 4689999999999999996 6799888 9999877
No 99
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=67.35 E-value=7.3 Score=31.12 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=28.7
Q ss_pred ccchhHHHHHHHHhhccCC-CCCCcccccccceehcc
Q psy1412 310 FSVSNSFWFITGTFLRQGS-GLNPKVLQQGSSRTLDT 345 (504)
Q Consensus 310 ~~l~~~~w~~~~~l~~qg~-~~~p~~~~~~s~R~v~~ 345 (504)
+++.+++|+++.++...|. +..|.+. .+|++..
T Consensus 48 ~~~~~a~y~~~~T~tTvGyGdi~P~t~---~gr~~~~ 81 (114)
T 2q67_A 48 LRPIDALYFSVVTLTTVGAGNFSPQTD---FGKIFTI 81 (114)
T ss_dssp CCHHHHHHHHHHHHTSCCCSSCCCCSH---HHHHHHH
T ss_pred CCHHHHHHHHHHHhcceeCCCCccCCH---hHHHHHH
Confidence 4688999999999999997 6789888 8998876
No 100
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=66.55 E-value=4.9 Score=35.45 Aligned_cols=73 Identities=8% Similarity=-0.007 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhcc-ccceecceeeecc---cceeee--eccceee
Q psy1412 166 FCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKK-ADLAVASMTINYA---RESVID--FTKPFMN 239 (504)
Q Consensus 166 ~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~-~D~av~~~tit~~---R~~~vd--Fs~p~~~ 239 (504)
+.-++++.+.++-|.++++.. ++-..++..|.+|+ +|+++..-....+ +...+. -..|+..
T Consensus 13 ~l~~~~~~F~~~p~i~v~~~~-------------~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (231)
T 1atg_A 13 TLEQLAGQFAKQTGHAVVISS-------------GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAI 79 (231)
T ss_dssp HHHHHHHHHHHHHCCCEEEEE-------------ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEE
T ss_pred HHHHHHHHHHhccCCeEEEEE-------------CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeee
Confidence 344677777777788888763 23467889999998 9998763221111 122221 1468899
Q ss_pred ccEEEEEEccCC
Q psy1412 240 LGIGILFKVPTS 251 (504)
Q Consensus 240 ~g~~ilv~~~~~ 251 (504)
..+++++++..+
T Consensus 80 ~~~vlv~~~~~~ 91 (231)
T 1atg_A 80 GKLVLWSAKPGL 91 (231)
T ss_dssp CCEEEEESSTTT
T ss_pred eeEEEEEcCCCC
Confidence 999999986543
No 101
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=64.74 E-value=25 Score=32.35 Aligned_cols=69 Identities=12% Similarity=-0.053 Sum_probs=41.2
Q ss_pred cccCChHHHHHhhhcCC-eEEEeecchhhhhhhcCCccEEcCCcc-C--CcceEEEecCCCCCchHHHHHHHhhh
Q psy1412 408 VFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNCNLTQIGGLL-D--SKGYGIATPKGSPWRDRISLAILELQ 478 (504)
Q Consensus 408 ~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c~l~~vg~~~-~--~~~~g~a~~k~Spl~~~in~ail~l~ 478 (504)
..+.+.+..++.|..|. .+++-+.....+... ..+..+-+.. . ...++++.+++.+....+...+..++
T Consensus 218 ~~~~~~~~~~~~v~~G~Gia~lp~~~~~~~~~~--g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~ 290 (306)
T 3hhg_A 218 FTASSGEILRSLCLSGCGIVCLSDFLVDNDIAE--GKLIPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFLV 290 (306)
T ss_dssp SEESSHHHHHHHHHTTSCEEEEEHHHHHHHHHH--TSSEECSTTTBCCCEEEEEEEECSGGGGCHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHhCCCeEeccHHHHHHHHhC--CCcEEeCCCCcCCCCccEEEEecCCCcCCHHHHHHHHHHH
Confidence 34677888888999888 566655444444332 2344432222 2 24788899988776666555554443
No 102
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=64.30 E-value=85 Score=29.35 Aligned_cols=78 Identities=10% Similarity=-0.112 Sum_probs=45.3
Q ss_pred cCChHHHHHhhhcCCeE-EEeecchhhhhhhcCCccEEcCC--ccCCcceEEEecCCCCCchHHHHHHHhhhccChhHHH
Q psy1412 410 VSDYEEGVKRVLEGDYA-FLMESTMLDYEVQRNCNLTQIGG--LLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQML 486 (504)
Q Consensus 410 ~~~~~egi~~v~~g~~A-~i~e~~~~~y~~~~~c~l~~vg~--~~~~~~~g~a~~k~Spl~~~in~ail~l~e~G~l~~l 486 (504)
..+..+..+.+.+|+.+ .+........+.+..-++..+-+ -....+.+++++|+++-.+.--+.|.-|........+
T Consensus 216 ~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~e~q~~~ 295 (351)
T 4edp_A 216 YSKSSDLANMFSNGEIVAAVASDFAFGTISKAKPEVINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSKEVQEKT 295 (351)
T ss_dssp ECCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTTCEEECCTTCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSHHHHHHH
T ss_pred cCChHHHHHHHHcCCEEEEecCcHHHHHHHhcCCCeeeeCCCCCcccceeeEEEECCCCCHHHHHHHHHHhcCHHHHHHH
Confidence 45678888899999954 44333333333333333333321 1222345899999999877777777666654333333
Q ss_pred H
Q psy1412 487 Y 487 (504)
Q Consensus 487 ~ 487 (504)
.
T Consensus 296 ~ 296 (351)
T 4edp_A 296 A 296 (351)
T ss_dssp H
T ss_pred H
Confidence 3
No 103
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=64.17 E-value=9.2 Score=35.07 Aligned_cols=71 Identities=14% Similarity=0.069 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccc-eeeeeccceeeccEE
Q psy1412 166 FCIDLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARE-SVIDFTKPFMNLGIG 243 (504)
Q Consensus 166 ~~idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~-~~vdFs~p~~~~g~~ 243 (504)
+-.+++..+.++. +.++++. .+....++..|.+|++|+++.......++. ..+. ..|+....++
T Consensus 41 ~l~~~l~~f~~~~P~i~v~i~-------------~~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~ 106 (290)
T 1twy_A 41 IMDVLAEKYNQQHPETYVAVQ-------------GVGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLA 106 (290)
T ss_dssp HHHHHHHHHHHHCTTCEEEEE-------------ESCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEE
T ss_pred HHHHHHHHHHhhCCCceEEEE-------------ecCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEE
Confidence 3346777777776 6777776 335677999999999999986544332110 2233 3588888999
Q ss_pred EEEEccC
Q psy1412 244 ILFKVPT 250 (504)
Q Consensus 244 ilv~~~~ 250 (504)
+++++..
T Consensus 107 ~v~~~~~ 113 (290)
T 1twy_A 107 IVVNQAN 113 (290)
T ss_dssp EEECTTC
T ss_pred EEECCCC
Confidence 9987654
No 104
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=63.19 E-value=6.9 Score=35.84 Aligned_cols=75 Identities=12% Similarity=-0.071 Sum_probs=53.4
Q ss_pred eehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccc---eeeeeccceeec
Q psy1412 164 EGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARE---SVIDFTKPFMNL 240 (504)
Q Consensus 164 ~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~---~~vdFs~p~~~~ 240 (504)
+|+.-+|+.++.++.|.++++... .-..++.++.+|.+|+++..-....+.. ....-..||+..
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~-------------gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n 84 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVKVDVIAV-------------GTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYN 84 (236)
T ss_dssp HCHHHHHHHHHHHHHTCEEEEEEE-------------CHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEEC
T ss_pred hHHHHHHHHHHHHHhCCeEEEEEc-------------ChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcC
Confidence 467778999998888988888753 2345889999999999876544332221 111224699999
Q ss_pred cEEEEEEccCC
Q psy1412 241 GIGILFKVPTS 251 (504)
Q Consensus 241 g~~ilv~~~~~ 251 (504)
.+++++|+.++
T Consensus 85 ~lVlV~P~~~P 95 (236)
T 3lr1_A 85 DFVIVGPKNDP 95 (236)
T ss_dssp CEEEEECTTCT
T ss_pred cEEEEEECCCh
Confidence 99999987754
No 105
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=61.13 E-value=8.2 Score=37.65 Aligned_cols=64 Identities=6% Similarity=-0.063 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccceeee-ec-ccee
Q psy1412 168 IDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVID-FT-KPFM 238 (504)
Q Consensus 168 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~~~vd-Fs-~p~~ 238 (504)
-.+.+++.++.|-++++...+.+.. |.+..+++.|..|.+|+++........+...+. |+ .||.
T Consensus 53 ~~fa~~v~e~t~G~v~i~v~~~g~L-------g~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~~lP~~ 118 (361)
T 2zzv_A 53 QKFTERVKELTDGQLEVQPFPAGAV-------VGTFDMFDAVKTGVLDGMNPFTLYWAGRMPVTAFLSSYALG 118 (361)
T ss_dssp HHHHHHHHHHTTTSEEEEEECTTSS-------SCGGGHHHHHHHTSSSEEECBGGGGTTTCGGGGGSSCCTTS
T ss_pred HHHHHHHHHhcCCeEEEEEeCCCcc-------cCHHHHHHHHHcCceeEEEeccccccccCcHHHHHhcCCCC
Confidence 3567778888887777777765443 457789999999999999877766665554443 22 5554
No 106
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=60.79 E-value=6.5 Score=37.76 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=26.4
Q ss_pred ccchhhhHHHHHHHHHHHhhhcCCcccccCCCCCCCcccCchh-HHHHhhhc
Q psy1412 48 EPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGLS-LYNYINTL 98 (504)
Q Consensus 48 ~~~~~yDav~~~a~a~~~~~~~~~~~~~~~~c~~~~~~~~G~~-l~~~l~~~ 98 (504)
.++++|||+++++.|+++... .++.. +.++|++.
T Consensus 278 ~~~~~yda~~~~~~al~~ag~-----------------~~~~~~~~~~l~~~ 312 (358)
T 3hut_A 278 FAAHGYDAVGIMLAAVGRAGP-----------------EVTRESLRDALAAT 312 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-----------------TCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhCC-----------------CChHHHHHHHHHhc
Confidence 689999999999999998631 23456 88888764
No 107
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=59.75 E-value=8.7 Score=35.16 Aligned_cols=75 Identities=12% Similarity=0.027 Sum_probs=52.5
Q ss_pred eehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccc---eeeeeccceeec
Q psy1412 164 EGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARE---SVIDFTKPFMNL 240 (504)
Q Consensus 164 ~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~---~~vdFs~p~~~~ 240 (504)
+|+.-+|+.++.++.|.++++.... -..++.++.+|.+|+++..-....+.. .+..-..||+..
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~g-------------Sg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N 84 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYKVDVIAAG-------------TGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYN 84 (237)
T ss_dssp HTHHHHHHHHHHHHHCCEEEEEEEC-------------HHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHhCceEEEEEcC-------------hHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeC
Confidence 4667789999988889888887432 235789999999999876543332221 111224789999
Q ss_pred cEEEEEEccCC
Q psy1412 241 GIGILFKVPTS 251 (504)
Q Consensus 241 g~~ilv~~~~~ 251 (504)
.+++++|+.++
T Consensus 85 ~lVlV~P~~~P 95 (237)
T 3muq_A 85 DFVIVGPKADP 95 (237)
T ss_dssp EEEEEECTTCT
T ss_pred CEEEEEeCCCh
Confidence 99999987654
No 108
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=59.67 E-value=8.2 Score=37.13 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=28.8
Q ss_pred ccchhhhHHHHHHHHHHHhhhcCCcccccCCCCCCCcccCchhHHHHhhhce
Q psy1412 48 EPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGLSLYNYINTLD 99 (504)
Q Consensus 48 ~~~~~yDav~~~a~a~~~~~~~~~~~~~~~~c~~~~~~~~G~~l~~~l~~~~ 99 (504)
.++.+|||++++++|+++.. ...++..+.++|++.+
T Consensus 281 ~~~~~yda~~~~~~al~~~g----------------~~~~~~~l~~al~~~~ 316 (368)
T 4eyg_A 281 MAVGGYDGIHLVFEALKKTG----------------GKADGDSLIAAMKGMK 316 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----------------TCCSHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHHhC----------------CCCCHHHHHHHHHcCC
Confidence 68899999999999999763 1135778999988755
No 109
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=59.55 E-value=7.9 Score=37.62 Aligned_cols=34 Identities=9% Similarity=0.049 Sum_probs=27.5
Q ss_pred ccchhhhHHHHHHHHHHHhhhcCCcccccCCCCCCCcccCchhHHHHhhhc
Q psy1412 48 EPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGLSLYNYINTL 98 (504)
Q Consensus 48 ~~~~~yDav~~~a~a~~~~~~~~~~~~~~~~c~~~~~~~~G~~l~~~l~~~ 98 (504)
.++++|||++++++|+++... .++..+.++|++.
T Consensus 284 ~a~~~Yda~~~l~~Al~~ag~-----------------~~~~~v~~aL~~~ 317 (374)
T 3n0x_A 284 FTAGGFSAAMAVVTAVQKAKS-----------------TDTEKLIAAMEGM 317 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS-----------------CCHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHhCC-----------------CCHHHHHHHHhcC
Confidence 688999999999999998631 3567888888864
No 110
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=59.45 E-value=6 Score=37.91 Aligned_cols=41 Identities=17% Similarity=-0.015 Sum_probs=30.5
Q ss_pred ccchhhhHHHHHHHHHHHhhhcCCcccccCCCCCCCcccCchhHHHHhhhc
Q psy1412 48 EPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGLSLYNYINTL 98 (504)
Q Consensus 48 ~~~~~yDav~~~a~a~~~~~~~~~~~~~~~~c~~~~~~~~G~~l~~~l~~~ 98 (504)
.++++|||++++++|+++..+.. ..+.+.++..+.++|.+.
T Consensus 283 ~~~~~yda~~~~~~al~~a~~~~----------~~g~~~~~~~~~~al~~~ 323 (362)
T 3snr_A 283 FAGHSYDAFKVLERVVPVALKKA----------KPGTQEFREALREAFLTE 323 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----------CTTSHHHHHHHHHHHHHC
T ss_pred hhHhHHHHHHHHHHHHHHhhccc----------cCCCcchHHHHHHHHHhc
Confidence 68899999999999999875321 113345678888888764
No 111
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=58.68 E-value=8.8 Score=37.91 Aligned_cols=42 Identities=10% Similarity=0.024 Sum_probs=31.4
Q ss_pred ccchhhhHHHHHHHHHHHhhhcCCcccccCCCCCCCcccCchhHHHHhhhce
Q psy1412 48 EPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGLSLYNYINTLD 99 (504)
Q Consensus 48 ~~~~~yDav~~~a~a~~~~~~~~~~~~~~~~c~~~~~~~~G~~l~~~l~~~~ 99 (504)
.++++|||++++++|+++.. +|...+.+.++..+.++|++.+
T Consensus 304 ~a~~~Yda~~~~~~a~~~a~----------~~~~~g~~~~~~~l~~al~~~~ 345 (419)
T 3h5l_A 304 SGCQTYSALYAYSIAAALAG----------GPGAPYDDVQNKAVADRLRSLI 345 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----------SCCCTTCHHHHHHHHHHHHHCE
T ss_pred hhHHHHHHHHHHHHHHHHhc----------CCccCCCccCHHHHHHHHHhCC
Confidence 67899999999999998763 2223334567888999998743
No 112
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=57.73 E-value=11 Score=35.90 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=26.2
Q ss_pred ccchhhhHHHHHHHHHHHhhhcCCcccccCCCCCCCcccCchhHHHHhhh
Q psy1412 48 EPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGLSLYNYINT 97 (504)
Q Consensus 48 ~~~~~yDav~~~a~a~~~~~~~~~~~~~~~~c~~~~~~~~G~~l~~~l~~ 97 (504)
.++.+|||++++++|+++.. + .++..+.++|++
T Consensus 276 ~~~~~yda~~~~~~al~~~g----------~-------~~~~~l~~~l~~ 308 (346)
T 1usg_A 276 YVWITYAAVQSLATALERTG----------S-------DEPLALVKDLKA 308 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----------C-------CCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC----------C-------CCHHHHHHHHHh
Confidence 67899999999999999863 1 246778888776
No 113
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=57.13 E-value=11 Score=33.68 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=28.9
Q ss_pred cccchhHHHHHHHHhhccCC-CCCCcccccccceehcc
Q psy1412 309 QFSVSNSFWFITGTFLRQGS-GLNPKVLQQGSSRTLDT 345 (504)
Q Consensus 309 ~~~l~~~~w~~~~~l~~qg~-~~~p~~~~~~s~R~v~~ 345 (504)
..++.+++|+++.++...|. +..|.+. .+|+++.
T Consensus 163 ~~~~~~s~y~~~~t~tTvGyGdi~P~t~---~~~~~~~ 197 (223)
T 1orq_C 163 IKSVFDALWWAVVTATTVGYGDVVPATP---IGKVIGI 197 (223)
T ss_dssp CCSHHHHHHHHHHHHTTCCCCSSCCCSH---HHHHHHH
T ss_pred cCcchhHHHhHHhHHhccCCCCCCCCCH---hHHHHHH
Confidence 35789999999999999885 6789888 8998766
No 114
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=55.96 E-value=13 Score=36.15 Aligned_cols=55 Identities=9% Similarity=-0.044 Sum_probs=35.4
Q ss_pred hhhhhcccccCCCccccccccccchhhhHHHHHHHHHHHhhhcCCcccccCCCCCCCcccCchhHHHHhhhce
Q psy1412 27 SCDLEVPWRDGLSLYNYINTAEPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGLSLYNYINTLD 99 (504)
Q Consensus 27 ~~~~~~~W~~g~~~~~~i~~~~~~~~yDav~~~a~a~~~~~~~~~~~~~~~~c~~~~~~~~G~~l~~~l~~~~ 99 (504)
.+.|.++|............ .++.+|||++++++|+++.. + .++..+.++|++.+
T Consensus 265 ~~~f~~~~~~~~g~~~~~~~-~~~~~yda~~~~~~Al~~ag----------~-------~~~~~l~~al~~~~ 319 (385)
T 1pea_A 265 SRAFVQACHGFFPENATITA-WAEAAYWQTLLLGRAAQAAG----------N-------WRVEDVQRHLYDID 319 (385)
T ss_dssp HHHHHHHHHTTSCTTCCCCH-HHHHHHHHHHHHHHHHHHHT----------S-------CCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCCCCCCh-HHHHHHHHHHHHHHHHHHhC----------C-------CCHHHHHHHHhhCc
Confidence 55666666442111001222 68899999999999999873 1 24678888888754
No 115
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=52.46 E-value=19 Score=33.17 Aligned_cols=72 Identities=4% Similarity=-0.008 Sum_probs=49.0
Q ss_pred ehhHHHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecc---cceeeeeccceeec
Q psy1412 165 GFCIDLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYA---RESVIDFTKPFMNL 240 (504)
Q Consensus 165 G~~idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~---R~~~vdFs~p~~~~ 240 (504)
.+.-++++++.++. +.++++.. +.-...+.+|.+|++|+++.+..+..+ ....+. ..|+...
T Consensus 16 ~~l~~~~~~f~~~~P~v~i~v~~-------------~~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l~-~~~i~~d 81 (264)
T 4ecf_A 16 PLVEAAGEQYTGEHLGTFINVQG-------------GGTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQLV-DHRVAVV 81 (264)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEEE-------------ECHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGEE-CCEEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEEEe-------------CCCHHHHHHHHcCCCchhhccCCCChhHHhhccCCE-EEEEEEE
Confidence 34456777777765 56777653 234678999999999999877655432 111222 4799999
Q ss_pred cEEEEEEccC
Q psy1412 241 GIGILFKVPT 250 (504)
Q Consensus 241 g~~ilv~~~~ 250 (504)
+++++++...
T Consensus 82 ~lvvvv~~~~ 91 (264)
T 4ecf_A 82 GITPIVNKKV 91 (264)
T ss_dssp EEEEEECTTS
T ss_pred EEEEEEcCCC
Confidence 9999998654
No 116
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=50.96 E-value=9.8 Score=37.09 Aligned_cols=72 Identities=8% Similarity=-0.006 Sum_probs=41.7
Q ss_pred ccchhhhHHHHHHHHHHHhhhc-CCccc-------ccCC----CC--------CCCc--cc-CchhHHHHhhhceEEEee
Q psy1412 48 EPALMYDSVHVLAAGLALLDKS-SVIKT-------SNLS----CD--------LEVP--WR-DGLSLYNYINTLDLLKLK 104 (504)
Q Consensus 48 ~~~~~yDav~~~a~a~~~~~~~-~~~~~-------~~~~----c~--------~~~~--~~-~G~~l~~~l~~~~i~~~~ 104 (504)
.++.+|||++++++|+++.... ...+. ..+. .+ ..++ +. .|.. ..+.+.|++++
T Consensus 286 ~~~~~yda~~~~~~al~~ag~~~~~~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~---~~~~~~i~~~~ 362 (392)
T 3lkb_A 286 NYTNGMLAAAIAVEAIRRAQERFKRITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHT---GAEGLRILEAK 362 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCE---EECCBEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcC---CcccEEEEEEe
Confidence 4789999999999999987530 00000 0000 11 0111 11 1111 12337788888
Q ss_pred ccceeeeeEecCCCCcee
Q psy1412 105 REELRKVGHWTPAEGINI 122 (504)
Q Consensus 105 ~~~~~~vg~W~~~~gl~~ 122 (504)
+.+++.|+.|...+++..
T Consensus 363 ~g~~~~v~~w~~~~~~~~ 380 (392)
T 3lkb_A 363 GGRFVPVTEPFTSALFRK 380 (392)
T ss_dssp TTEEEECSCCBCCHHHHH
T ss_pred CCEEEEeccccchhHHHh
Confidence 888899999987766653
No 117
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=50.22 E-value=11 Score=35.48 Aligned_cols=74 Identities=9% Similarity=0.027 Sum_probs=49.3
Q ss_pred ehhHHHHHHHHHH---c---CceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccc--eeeee-cc
Q psy1412 165 GFCIDLLKSIAAQ---V---GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARE--SVIDF-TK 235 (504)
Q Consensus 165 G~~idll~~la~~---l---~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~--~~vdF-s~ 235 (504)
.+..+++.++.++ . +.++++.. +....++.+|.+|++|+++..-....+.. .-+.+ ..
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P~v~v~l~~-------------~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~ 99 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSAPFKVAWYK-------------SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPS 99 (294)
T ss_dssp THHHHHHHHHHHHHHSCC---CEEEEEE-------------CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSC
T ss_pred HHHHHHHHHHHhhhcccCCCCeEEEEEe-------------CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCccccee
Confidence 4556788888888 6 77787773 45678999999999999875432221110 01112 24
Q ss_pred -ceeeccEEEEEEccCC
Q psy1412 236 -PFMNLGIGILFKVPTS 251 (504)
Q Consensus 236 -p~~~~g~~ilv~~~~~ 251 (504)
|+....++++++...+
T Consensus 100 ~~l~~d~lvlv~~~~hp 116 (294)
T 3cvg_A 100 YYAFRDHFMLIGPPSNP 116 (294)
T ss_dssp EEEEEEEEEEEECTTCT
T ss_pred eeEEeccEEEEecCCCh
Confidence 8899999999886543
No 118
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=49.97 E-value=29 Score=30.63 Aligned_cols=68 Identities=16% Similarity=0.063 Sum_probs=49.2
Q ss_pred ehhHHHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccceeeeeccceeeccEE
Q psy1412 165 GFCIDLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIG 243 (504)
Q Consensus 165 G~~idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ 243 (504)
.+-.+++..+.++. +.++++. .+....++..|.+|++|+++...... .+. +.|..+..++
T Consensus 40 ~~l~~~l~~f~~~~P~i~l~i~-------------~~~~~~~~~~L~~g~~Dl~i~~~~~~-----~~~-~~~l~~~~~~ 100 (238)
T 3onm_A 40 TLLPFLLNRVATLYPRLAIDVR-------------VKRSPFIADMLSSGEVDLAITTAKVD-----SHP-HVILRTSPTL 100 (238)
T ss_dssp THHHHHHHHHHHHCTTCCEEEE-------------ECCHHHHHHHHHHTSCSEEEECSCC------CCC-EEEEEEECEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEE-------------ECCHHHHHHHHHCCCccEEEEecCCC-----Ccc-eEEeecCCEE
Confidence 45567888888776 5677776 34677899999999999998654321 133 4688889999
Q ss_pred EEEEccCC
Q psy1412 244 ILFKVPTS 251 (504)
Q Consensus 244 ilv~~~~~ 251 (504)
+++++..+
T Consensus 101 ~v~~~~~~ 108 (238)
T 3onm_A 101 WYCSVDYQ 108 (238)
T ss_dssp EEEETTCC
T ss_pred EEEcCCCC
Confidence 99987643
No 119
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=48.53 E-value=15 Score=34.58 Aligned_cols=52 Identities=4% Similarity=0.029 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeeccc
Q psy1412 169 DLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYAR 227 (504)
Q Consensus 169 dll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R 227 (504)
.+.+++.++.|-++++...+.+.-| .-..+++.|..|.+|++..+......+
T Consensus 22 ~fa~~v~e~s~G~i~i~~~~~g~Lg-------~~~~~~e~v~~G~id~~~~~~~~~~~~ 73 (301)
T 2pfy_A 22 QFADEVKAATAGALEIKVQSNSTLL-------KRPEVKRGVQQGVVQIGEVLVSALGNE 73 (301)
T ss_dssp HHHHHHHHHTTTSEEEEEECTTSSS-------CGGGHHHHHHHTSSSEEEEEGGGGTTT
T ss_pred HHHHHHHHHcCCeEEEEEccchhhC-------ChHHHHHHHHCCCeeeehhhhhhhhcc
Confidence 5667788888889999888876544 346799999999999987665444444
No 120
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=48.01 E-value=12 Score=36.08 Aligned_cols=41 Identities=10% Similarity=0.019 Sum_probs=30.0
Q ss_pred ccchhhhHHHHHHHHHHHhhhcCCcccccCCCCCCCcccCchhHHHHhhhc
Q psy1412 48 EPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGLSLYNYINTL 98 (504)
Q Consensus 48 ~~~~~yDav~~~a~a~~~~~~~~~~~~~~~~c~~~~~~~~G~~l~~~l~~~ 98 (504)
.++.+|||++++++|+++..+.. ..+.+.++..+.++|.+.
T Consensus 307 ~~~~~yda~~~~~~al~~a~~~~----------~~g~~~~~~~~~~al~~~ 347 (386)
T 3sg0_A 307 FGVHLWDSMTLVENAIPAALKAA----------KPGTPEFRAAIRDQIEKS 347 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----------CTTSHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHhhhcc----------CCCCcchHHHHHHHHHhc
Confidence 68899999999999999875321 112345577888888764
No 121
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=47.78 E-value=90 Score=28.47 Aligned_cols=66 Identities=9% Similarity=-0.076 Sum_probs=39.8
Q ss_pred cccCChHHHHHhhhcCC-eEEEeecchhhhhhhcCCccEEcCCccCCcceEEEecCCCCCchHHHHHHHhh
Q psy1412 408 VFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNCNLTQIGGLLDSKGYGIATPKGSPWRDRISLAILEL 477 (504)
Q Consensus 408 ~~~~~~~egi~~v~~g~-~A~i~e~~~~~y~~~~~c~l~~vg~~~~~~~~g~a~~k~Spl~~~in~ail~l 477 (504)
..+.+.+..+..|.+|. .+++-+.....+... ..+..+.+.. ..++++.+++.+....+...+..+
T Consensus 219 ~~~~~~~~~~~~v~~g~Gi~~lp~~~~~~~~~~--~~l~~l~~~~--~~~~l~~~~~~~~~~~~~~f~~~l 285 (303)
T 3isp_A 219 HFVPTTEGFTAAARAGLGWGMFPEKLAASPLAD--GSFVRVCDIH--LDVPLYWQCWKLDSPIIARITDTV 285 (303)
T ss_dssp CCCCSHHHHHHHHHTTSCBEEEEHHHHHHHHHH--SSCEESSSCC--EEEEEEEEEESSCCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHhCCeEEeccHHHHhhhhcC--CCeEEecCCC--CccceEEecCCCCChHHHHHHHHH
Confidence 34667788888888888 666655444443322 3455555444 667888887765555544444333
No 122
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=46.52 E-value=11 Score=34.77 Aligned_cols=49 Identities=2% Similarity=-0.054 Sum_probs=29.5
Q ss_pred cchhhHHHHhhccccceecceeeecccceeeeec--cceee-ccEEEEEEcc
Q psy1412 201 EWNGIVKELMDKKADLAVASMTINYARESVIDFT--KPFMN-LGIGILFKVP 249 (504)
Q Consensus 201 ~w~gli~~l~~g~~D~av~~~tit~~R~~~vdFs--~p~~~-~g~~ilv~~~ 249 (504)
+|+.++..|..|++|+++.+......+.+-+++. .++.. ....+++++.
T Consensus 46 ~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~ 97 (280)
T 1zbm_A 46 DIETLNRKAFNAEYEVTAISAHAYALLDDKYRILSAGASVGDGYGPVVVAKS 97 (280)
T ss_dssp CHHHHHHHGGGTCCSEEEEEHHHHTTSTTTEEECSSCCEEESSCCCEEEESS
T ss_pred CHHHHHHHHHcCCCCEEEECHHHHHHhcCCCcEEeeccccCCCeeEEEEEcC
Confidence 5889999999999999986433333333334443 23333 3234566654
No 123
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=45.62 E-value=12 Score=36.28 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=28.8
Q ss_pred ccchhhhHHHHHHHHHHHhhhcCCcccccCCCCCCCcccCchhHHHHhhhceE
Q psy1412 48 EPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGLSLYNYINTLDL 100 (504)
Q Consensus 48 ~~~~~yDav~~~a~a~~~~~~~~~~~~~~~~c~~~~~~~~G~~l~~~l~~~~i 100 (504)
.++.+|||++++++|+++.. ..++..+.++|++.+.
T Consensus 279 ~a~~~Yda~~~~~~Al~~ag-----------------~~~~~~l~~aL~~~~~ 314 (375)
T 3i09_A 279 LQAADYSSVTTYLKAVQAAG-----------------STDSDKVMAQLKKMKI 314 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-----------------SCCHHHHHHHHTTSCE
T ss_pred HHHHHHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHhCCCc
Confidence 67899999999999999863 1356788888887553
No 124
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=45.31 E-value=30 Score=31.91 Aligned_cols=71 Identities=6% Similarity=0.011 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeec-c--cceeeeeccceeecc
Q psy1412 166 FCIDLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINY-A--RESVIDFTKPFMNLG 241 (504)
Q Consensus 166 ~~idll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~-~--R~~~vdFs~p~~~~g 241 (504)
+.-.+++++.++. +.++++.. +.-...+.+|.+|++|+++.+..... + ....+. ..|+...+
T Consensus 17 ~~~~~~~~F~~~~P~v~i~v~~-------------~gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l~-~~~ia~d~ 82 (265)
T 4exl_A 17 LVEVAADEFGTIHVGKTVNVQG-------------GGSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASALV-DHKVAVAG 82 (265)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEE-------------ECHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGEE-CCEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEee-------------CCcHHHHHHHHcCCCccccccCCcchhhcccccCce-EeeEEEEE
Confidence 3345666776666 56777663 23457899999999999987643321 0 111122 47999999
Q ss_pred EEEEEEccC
Q psy1412 242 IGILFKVPT 250 (504)
Q Consensus 242 ~~ilv~~~~ 250 (504)
++++++...
T Consensus 83 lvvvv~~~~ 91 (265)
T 4exl_A 83 LALIVNKEV 91 (265)
T ss_dssp EEEEECTTC
T ss_pred EEEEECCCC
Confidence 999998643
No 125
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=44.92 E-value=16 Score=34.40 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeeccc
Q psy1412 169 DLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYAR 227 (504)
Q Consensus 169 dll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R 227 (504)
.+.+++.++.|-++++...+.+.-| .-..+++.|..|.+|++.........+
T Consensus 21 ~fa~~v~~~s~G~i~i~~~~~g~Lg-------~~~~~~~~v~~G~id~~~~~~~~~~~~ 72 (301)
T 2pfz_A 21 QFVKDVDSLSGGKLKITLHNNASLY-------KAPEIKRAVQGNQAQIGEILLTNFANE 72 (301)
T ss_dssp HHHHHHHHHHTTSCEEEEECTTSSS-------CGGGHHHHHHTTSSSEEEEEGGGGTTT
T ss_pred HHHHHHHHHcCCeEEEEEccCcccC-------ChHHHHHHHHCCceeeEechhhhcccc
Confidence 5667778888888888877765544 446799999999999987665544444
No 126
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=44.78 E-value=12 Score=36.24 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=27.8
Q ss_pred ccchhhhHHHHHHHHHHHhhhcCCcccccCCCCCCCcccCchhHHHHhhhce
Q psy1412 48 EPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGLSLYNYINTLD 99 (504)
Q Consensus 48 ~~~~~yDav~~~a~a~~~~~~~~~~~~~~~~c~~~~~~~~G~~l~~~l~~~~ 99 (504)
.++++|||++++++|+++.. ..++..+.++|++.+
T Consensus 282 ~~~~~Yda~~~~~~Al~~ag-----------------~~~~~~v~~aL~~~~ 316 (379)
T 3n0w_A 282 NQAGGYSAALQYLKAVNAIG-----------------SKDPQKVFAYLKTIK 316 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-----------------CCCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHhcCC
Confidence 67899999999999999863 135678888887644
No 127
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=43.03 E-value=28 Score=33.50 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=28.7
Q ss_pred ccchhHHHHHHHHhhccCC-CCCCcccccccceehcc
Q psy1412 310 FSVSNSFWFITGTFLRQGS-GLNPKVLQQGSSRTLDT 345 (504)
Q Consensus 310 ~~l~~~~w~~~~~l~~qg~-~~~p~~~~~~s~R~v~~ 345 (504)
.++.+++||++.++...|. ++.|.+. .+|+++.
T Consensus 95 ~s~~~a~yfs~vT~tTVGYGDi~P~t~---~gr~~~~ 128 (333)
T 1p7b_A 95 PGFVGAFFFSVETLATVGYGDMHPQTV---YAHAIAT 128 (333)
T ss_dssp SSTHHHHHHHTTTTTTCCCSCCCCCSH---HHHHHHH
T ss_pred CcHHHhHhhhheeeeecCCCCCcCCCH---HHHHHHH
Confidence 4688999999999999986 5789888 8998877
No 128
>3fd3_A Chromosome replication initiation inhibitor prote; structural genomics, LYSR, PSI-2, structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=42.68 E-value=1.5e+02 Score=24.71 Aligned_cols=67 Identities=10% Similarity=0.056 Sum_probs=41.6
Q ss_pred ehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccceeeeeccceeeccEEE
Q psy1412 165 GFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGI 244 (504)
Q Consensus 165 G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~i 244 (504)
.+-.+++..+.++.+.++++.. +....++..|.+|..|+++..-... ...+. +.|+.+..+++
T Consensus 15 ~~l~~~l~~f~~~~~v~l~l~~-------------~~~~~~~~~l~~g~d~~~i~~~~~~---~~~l~-~~~l~~~~~~~ 77 (208)
T 3fd3_A 15 TWFLDAVSKFTGGSDYLVNIAV-------------DDQDHTVEWLRGGRVLAAVTAHDKP---VQGCR-VTPLGVLRYHA 77 (208)
T ss_dssp TTHHHHHHHHHHTSSCEEEEEE-------------CCSSCHHHHHHTTSCSEEEESCCSC---CTTCE-EEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhcCeEEEEEe-------------CCcHhHHHHHhcCcceEEEecCCCC---CCCce-EEEccceEEEE
Confidence 5566888999888876777663 3445688999999444333321111 22233 35777788877
Q ss_pred EEEc
Q psy1412 245 LFKV 248 (504)
Q Consensus 245 lv~~ 248 (504)
+++.
T Consensus 78 v~~~ 81 (208)
T 3fd3_A 78 TASP 81 (208)
T ss_dssp EECH
T ss_pred EECh
Confidence 7753
No 129
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=41.00 E-value=21 Score=33.94 Aligned_cols=72 Identities=13% Similarity=0.159 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccceee-eeccceeeccEEE
Q psy1412 166 FCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVI-DFTKPFMNLGIGI 244 (504)
Q Consensus 166 ~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~~~v-dFs~p~~~~g~~i 244 (504)
+--.+++++.+.-+.++++.. +.-...+.+|.+|++|+++.+-.+..+..... --..|+...++++
T Consensus 15 ~l~~~~~~f~~~p~v~i~v~~-------------~gS~~~~~~l~~g~~Di~~~~~~~~~~e~~~~~l~~~~~~~d~lvv 81 (321)
T 1ixh_A 15 VYAKWADTYQKETGNKVNYQG-------------IGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIGGVVL 81 (321)
T ss_dssp HHHHHHHHHHHHHCCEEEEEE-------------CCHHHHHHHHHTTCSSEEEESSCCCHHHHHHHTEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCceEEEec-------------CCCHHHHHHHHcCCCcEEecccCCChhhHhhCCCEEeeeeeeeEEE
Confidence 334566666554466777652 23456899999999999998887765542100 0236999999999
Q ss_pred EEEccC
Q psy1412 245 LFKVPT 250 (504)
Q Consensus 245 lv~~~~ 250 (504)
+++.+.
T Consensus 82 vv~~~~ 87 (321)
T 1ixh_A 82 AVNIPG 87 (321)
T ss_dssp EECCTT
T ss_pred EEeCCC
Confidence 998653
No 130
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=40.86 E-value=22 Score=34.38 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=27.9
Q ss_pred cchhHHHHHHHHhhccCC-CCCCcccccccceehcc
Q psy1412 311 SVSNSFWFITGTFLRQGS-GLNPKVLQQGSSRTLDT 345 (504)
Q Consensus 311 ~l~~~~w~~~~~l~~qg~-~~~p~~~~~~s~R~v~~ 345 (504)
++.+++|+++.++...|. +..|.+. .+|+++.
T Consensus 161 ~~~~s~y~~~~t~ttvGygd~~p~t~---~~~~~~~ 193 (355)
T 3beh_A 161 SIPQAMWWAVVTLSTTGYGDTIPQSF---AGRVLAG 193 (355)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSH---HHHHHHH
T ss_pred cHHHHHHHHHhheeecCCCCCCCCCh---hHHHHHH
Confidence 688999999999999885 6789888 8998876
No 131
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=39.32 E-value=26 Score=33.95 Aligned_cols=19 Identities=11% Similarity=0.123 Sum_probs=17.5
Q ss_pred ccchhhhHHHHHHHHHHHh
Q psy1412 48 EPALMYDSVHVLAAGLALL 66 (504)
Q Consensus 48 ~~~~~yDav~~~a~a~~~~ 66 (504)
.++.+|||++++++|+++.
T Consensus 289 ~~~~~yda~~~l~~Al~~a 307 (391)
T 3eaf_A 289 RVVQGFVNVWLLIKAIESV 307 (391)
T ss_dssp HHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999876
No 132
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=37.95 E-value=43 Score=31.13 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=42.8
Q ss_pred HHHHHHHHH-cCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeec-c------------cceeeeec
Q psy1412 169 DLLKSIAAQ-VGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINY-A------------RESVIDFT 234 (504)
Q Consensus 169 dll~~la~~-l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~-~------------R~~~vdFs 234 (504)
.+.+.+.++ .|.+++++. .+....++..|.+|++|+++....... . +.+.+.+.
T Consensus 38 ~la~~~~~~~~g~~v~v~~------------~~~~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 105 (314)
T 1us5_A 38 GIAKLVNDANVGIRANARS------------TGGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGKPVKTIRAL 105 (314)
T ss_dssp HHHHHHHHHTSSEEEEEEC------------CSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTCCCTTEEEE
T ss_pred HHHHHHHhcCCCceEEEEe------------cCcHHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCCCCccchheh
Confidence 344555544 577777652 124567889999999999876433211 0 11234443
Q ss_pred cceeeccEEEEEEccC
Q psy1412 235 KPFMNLGIGILFKVPT 250 (504)
Q Consensus 235 ~p~~~~g~~ilv~~~~ 250 (504)
.++......++++..+
T Consensus 106 ~~~~~~~~~lvv~~~~ 121 (314)
T 1us5_A 106 AALYPEVVHVVARKDA 121 (314)
T ss_dssp EEEEEEEEEEEEETTS
T ss_pred hhcCcceEEEEEECCC
Confidence 4677778888888654
No 133
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=37.60 E-value=14 Score=35.41 Aligned_cols=55 Identities=9% Similarity=-0.022 Sum_probs=35.7
Q ss_pred hhhhhcccccCCCccccccccccchhhhHHHHHHHHHHHhhhcCCcccccCCCCCCCcccCchhHHHHhhhc
Q psy1412 27 SCDLEVPWRDGLSLYNYINTAEPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGLSLYNYINTL 98 (504)
Q Consensus 27 ~~~~~~~W~~g~~~~~~i~~~~~~~~yDav~~~a~a~~~~~~~~~~~~~~~~c~~~~~~~~G~~l~~~l~~~ 98 (504)
.+.|.+.|............ .++.+|||+++++.|+++.. .+.++..+.++|.+.
T Consensus 265 ~~~f~~~~~~~~~~~~~p~~-~a~~~yda~~~~~~al~~ag----------------~~~~~~~v~~aL~~~ 319 (364)
T 3lop_A 265 IREFNRARAAVGAKDVDLSF-RAVEGFVAAKVLAEAIRRAG----------------PKPTREQVRHALTEL 319 (364)
T ss_dssp HHHHHHHHHHHTCTTCCCCH-HHHHHHHHHHHHHHHHHHHC----------------SSCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCCCCCCh-HHHHHHHHHHHHHHHHHHhC----------------CCCCHHHHHHHHHhc
Confidence 56666666431110001222 67899999999999999862 124678888888864
No 134
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=36.50 E-value=40 Score=32.24 Aligned_cols=33 Identities=18% Similarity=0.382 Sum_probs=28.3
Q ss_pred ccchhHHHHHHHHhhccCC-CCCCcccccccceehcc
Q psy1412 310 FSVSNSFWFITGTFLRQGS-GLNPKVLQQGSSRTLDT 345 (504)
Q Consensus 310 ~~l~~~~w~~~~~l~~qg~-~~~p~~~~~~s~R~v~~ 345 (504)
.++.+++|+++.++...|. ++.|.+. .+|+++.
T Consensus 77 ~s~~~a~y~s~vT~tTVGYGDi~P~t~---~gr~~~~ 110 (321)
T 2qks_A 77 AGFGGAFFFSVETLATVGYGDMHPQTV---YAHWIAT 110 (321)
T ss_dssp TTHHHHHHHHHHHHTTCCCCSSCBCSH---HHHHHHH
T ss_pred cchhheeeeeeEEeccccCCCcCcccH---HHHHHHH
Confidence 3789999999999999996 6789888 9997765
No 135
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=34.97 E-value=34 Score=32.37 Aligned_cols=34 Identities=29% Similarity=0.270 Sum_probs=29.4
Q ss_pred cccchhHHHHHHHHhhccCC-CCCCcccccccceehcc
Q psy1412 309 QFSVSNSFWFITGTFLRQGS-GLNPKVLQQGSSRTLDT 345 (504)
Q Consensus 309 ~~~l~~~~w~~~~~l~~qg~-~~~p~~~~~~s~R~v~~ 345 (504)
..++.+++||++.++...|. ++.|.+. .+|+++.
T Consensus 80 ~~s~~~a~yfs~vT~tTvGYGDi~P~t~---~gr~~~~ 114 (301)
T 1xl4_A 80 PGSFTDAFFFSVQTMATIGYGKLIPIGP---LANTLVT 114 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCCSSSCCCHH---HHHHHHH
T ss_pred cCCHHHHHHHhhhheeccCCCCCcCCCH---HHHHHHH
Confidence 45789999999999998886 6789888 9999877
No 136
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=34.45 E-value=26 Score=34.02 Aligned_cols=53 Identities=6% Similarity=0.036 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccc
Q psy1412 169 DLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARE 228 (504)
Q Consensus 169 dll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~ 228 (504)
.+.+.+.++.|-++++...+.+.- |....+++.|..|.+|++..+......+.
T Consensus 53 ~fa~~v~e~s~G~v~i~~~~~g~L-------g~~~~~~eav~~G~iD~~~~~~~~~~~~~ 105 (365)
T 2hzl_A 53 VLSKMLSEATDGNFQIQVFSAGEL-------VPGLQAADAVTEGTVECCHTVGYYYWGKD 105 (365)
T ss_dssp HHHHHHHHHTTTSSEEEEECTTTS-------SCGGGHHHHHHTTSSSEEEECGGGGTTTC
T ss_pred HHHHHHHHhcCCeEEEEEecCCcc-------cCHHHHHHHHHcCccceeecchhhhcccC
Confidence 466778888887777777776543 35677999999999999876654444443
No 137
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=33.35 E-value=22 Score=32.55 Aligned_cols=74 Identities=12% Similarity=-0.052 Sum_probs=50.4
Q ss_pred eehhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeecccc---eeeeeccceeec
Q psy1412 164 EGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARE---SVIDFTKPFMNL 240 (504)
Q Consensus 164 ~G~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~~R~---~~vdFs~p~~~~ 240 (504)
+|+--+|..+..++.|.++++.... -..++.++.+|.+|+.+..=....+.. .+..=..||+..
T Consensus 18 s~ll~eL~~~Fek~~gv~V~~~~~g-------------Sg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N 84 (242)
T 3kn3_A 18 TGLLDVLAPAYKKDTGVDLKWVAVG-------------TGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYN 84 (242)
T ss_dssp HTHHHHHHHHHHHHHSCEEEEEEEC-------------HHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECS
T ss_pred chHHHHHHHHHHHHhCCeEEEEEcC-------------cHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcc
Confidence 3566678888888889888887532 245889999999999875433222221 111123689999
Q ss_pred cEEEEEEccC
Q psy1412 241 GIGILFKVPT 250 (504)
Q Consensus 241 g~~ilv~~~~ 250 (504)
.+++++|+.+
T Consensus 85 ~LVLV~P~~~ 94 (242)
T 3kn3_A 85 DFVIIGNPSF 94 (242)
T ss_dssp CEEEEECTHH
T ss_pred eEEEEEeCCC
Confidence 9999998754
No 138
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=32.81 E-value=33 Score=32.32 Aligned_cols=66 Identities=8% Similarity=0.057 Sum_probs=41.2
Q ss_pred HHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceeccee-eecccceeee-ec--cceeecc--EEEEEE
Q psy1412 174 IAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMT-INYARESVID-FT--KPFMNLG--IGILFK 247 (504)
Q Consensus 174 la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~t-it~~R~~~vd-Fs--~p~~~~g--~~ilv~ 247 (504)
+.++.|++++++..+. .-..++..|.+|++|+++++.+ +...|.+-.+ |. .++.... ..++++
T Consensus 38 ~~~~~Gl~V~~~~~~~-----------g~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~i~v~ 106 (321)
T 2x7q_A 38 YYKAHDLSIEFVKVPE-----------GSGRLINLLNSNEVDIAIGLTEAFIADIAKGNENIHVLDTYVKSPLLWAVSTG 106 (321)
T ss_dssp HHHHTTCCEEEEECTT-----------CHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTCTTEEEEEEEECSCCEEEEEEE
T ss_pred cHHHCCceEEEEECCC-----------CHHHHHHHHHcCCccEEecCcHHHHHHHHCCCCcEEEEEEecCCCcceEEEEC
Confidence 5567899999875431 1123789999999999987664 3444443333 33 3455444 367777
Q ss_pred ccC
Q psy1412 248 VPT 250 (504)
Q Consensus 248 ~~~ 250 (504)
+.+
T Consensus 107 ~ds 109 (321)
T 2x7q_A 107 SNR 109 (321)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 139
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=31.63 E-value=54 Score=30.19 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=34.8
Q ss_pred hhhHHHHhhccccceecceeeecccceeeeeccceeeccEEEEEEccCC
Q psy1412 203 NGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTS 251 (504)
Q Consensus 203 ~gli~~l~~g~~D~av~~~tit~~R~~~vdFs~p~~~~g~~ilv~~~~~ 251 (504)
.+.+.++.+|.+|++..+-.+..+..+.---..|+...++++++.+..+
T Consensus 75 g~g~~~~~~G~~di~~as~~~~~~e~~~~~~~~~ia~d~~~vivn~~n~ 123 (279)
T 4gd5_A 75 SAGIKNAMEGVSEIGMASRDLKGEEKQAGLKEVEIAYDGIALITHKNNP 123 (279)
T ss_dssp HHHHHHHHHTSSSEEEESSCCCHHHHTTCCEEEEEEEEEEEEEEETTCS
T ss_pred HHHHHHHHcCCCcEEEecchhhhhHhhcCceEEEEEeeceeeeeccCCc
Confidence 4578889999999998877666433222112368899999999986643
No 140
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=31.07 E-value=53 Score=33.64 Aligned_cols=33 Identities=15% Similarity=0.488 Sum_probs=27.8
Q ss_pred ccchhHHHHHHHHhhccCC-CCCCcccccccceehcc
Q psy1412 310 FSVSNSFWFITGTFLRQGS-GLNPKVLQQGSSRTLDT 345 (504)
Q Consensus 310 ~~l~~~~w~~~~~l~~qg~-~~~p~~~~~~s~R~v~~ 345 (504)
.++.+++|+++.++...|. ++.|.+. .+|++++
T Consensus 374 ~s~~~a~y~~~vT~TTvGYGDi~P~t~---~gr~f~~ 407 (514)
T 2r9r_B 374 PSIPDAFWWAVVSMTTVGYGDMVPTTI---GGKIVGS 407 (514)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSH---HHHHHHH
T ss_pred cchhhhhheeeeEEEecccCCCCCCCc---chHhheh
Confidence 4689999999999999885 6788887 8888766
No 141
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=29.78 E-value=22 Score=34.40 Aligned_cols=57 Identities=7% Similarity=0.041 Sum_probs=35.1
Q ss_pred hhhhhcccccCCCccccccccccchhhhHHHHHHHHHHHhhhcCCcccccCCCCCCCcccCchhHHHHhhhceE
Q psy1412 27 SCDLEVPWRDGLSLYNYINTAEPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGLSLYNYINTLDL 100 (504)
Q Consensus 27 ~~~~~~~W~~g~~~~~~i~~~~~~~~yDav~~~a~a~~~~~~~~~~~~~~~~c~~~~~~~~G~~l~~~l~~~~i 100 (504)
.+.|.+.|+........... .++.+|||++++++|+++... ..++..+.++|++.+.
T Consensus 264 ~~~f~~~~~~~~~~~~~~~~-~a~~~Yda~~~l~~Ai~~~ag----------------~~d~~~v~~al~~~~~ 320 (371)
T 4f06_A 264 NKAFLALLQKGGAKLDEVTM-TSVAAYDGARLIYKMIEATSG----------------KSDPDKAIAAVKGMKW 320 (371)
T ss_dssp HHHHHHHHHHTTCCGGGCCH-HHHHHHHHHHHHHHHHHHTTT----------------SCCHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHhcCCCCCccc-hHHHHHHHHHHHHHHHHHhcC----------------CCCHHHHHHHHhCCCe
Confidence 45555555432111112222 678899999999999986320 1356788888887553
No 142
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=26.56 E-value=45 Score=32.13 Aligned_cols=49 Identities=2% Similarity=0.070 Sum_probs=36.8
Q ss_pred cchhhHHHHhhccccceecceeeeccccee---eeeccceeeccEEEEEEccC
Q psy1412 201 EWNGIVKELMDKKADLAVASMTINYARESV---IDFTKPFMNLGIGILFKVPT 250 (504)
Q Consensus 201 ~w~gli~~l~~g~~D~av~~~tit~~R~~~---vdFs~p~~~~g~~ilv~~~~ 250 (504)
.-.+.+.+|.+|++|+++.+..+..+..+. + ...|+...+++++++.+.
T Consensus 63 gS~~g~~~l~~g~~Di~~~~~~~~~~e~~~~~~l-~~~pi~~d~lvvvvn~~~ 114 (350)
T 1pc3_A 63 GSGAGIAQAAAGTVNIGASDAYLSEGDMAAHKGL-MNIALAISAQQVNYNLPG 114 (350)
T ss_dssp CHHHHHHHHHTTSCSEEEESSCCCHHHHHHSTTE-EEEEEEEEEEEEEECCTT
T ss_pred CCHHHHHHHHcCCCcEEeccCCCCHHHHHhcCCC-EEeeEEeeeEEEEEeCCc
Confidence 345688999999999999888777553211 1 246899999999998764
No 143
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=25.77 E-value=66 Score=33.18 Aligned_cols=33 Identities=6% Similarity=0.125 Sum_probs=28.5
Q ss_pred ccchhHHHHHHHHhhccCC-CCCCcccccccceehcc
Q psy1412 310 FSVSNSFWFITGTFLRQGS-GLNPKVLQQGSSRTLDT 345 (504)
Q Consensus 310 ~~l~~~~w~~~~~l~~qg~-~~~p~~~~~~s~R~v~~ 345 (504)
+++.+++||++-++...|. ++.|.+. .+|+++.
T Consensus 50 ~~~~~~~y~~~~t~tTvGygd~~p~~~---~~~~~~~ 83 (565)
T 4gx0_A 50 YSFMAGIYWTITVMTTLGFGDITFESD---AGYLFAS 83 (565)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSH---HHHHHHH
T ss_pred CchhhhhheeeeeeeeecCCCcCCCCc---cHHHHHH
Confidence 4689999999999998887 5788888 8998877
No 144
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=24.65 E-value=23 Score=33.80 Aligned_cols=18 Identities=44% Similarity=0.490 Sum_probs=16.1
Q ss_pred ccchhhhHHHHHHHHHHH
Q psy1412 48 EPALMYDSVHVLAAGLAL 65 (504)
Q Consensus 48 ~~~~~yDav~~~a~a~~~ 65 (504)
.++.+|||+++++.|+++
T Consensus 282 ~a~~~Yda~~~la~Ai~~ 299 (353)
T 4gnr_A 282 FAALAYDSVHLVANAAKG 299 (353)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 678999999999999964
No 145
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=24.54 E-value=1.4e+02 Score=27.05 Aligned_cols=72 Identities=15% Similarity=0.106 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeec-------ccceeeeecccee
Q psy1412 166 FCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINY-------ARESVIDFTKPFM 238 (504)
Q Consensus 166 ~~idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~-------~R~~~vdFs~p~~ 238 (504)
+...|+..+.+.+|+++++... +-.-+...|.+|++|+.......+. ...+......-+.
T Consensus 16 i~~~i~~~~Le~~G~~Ve~~~~-------------~~~~~~~al~~G~iD~~~e~w~~~~~~~~~~~~~~~l~~l~~~~~ 82 (256)
T 3l6g_A 16 ASINVLTQAMKEHGFDVKTTAL-------------DNAVAWQTVANGQADGMVSAWLPNTHKTQWQKYGKSVDLLGPNLK 82 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEC-------------CHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEEC-------------ChHHHHHHHHCCCCeEEEcccCCcccHHHHHHhCCceEEccccCC
Confidence 3347788888888999998742 2245788999999999765433220 1122333332233
Q ss_pred eccEEEEEEccC
Q psy1412 239 NLGIGILFKVPT 250 (504)
Q Consensus 239 ~~g~~ilv~~~~ 250 (504)
....+++||+..
T Consensus 83 ~~~~~l~Vp~~~ 94 (256)
T 3l6g_A 83 GAKVGFVVPSYM 94 (256)
T ss_dssp EEEEEEEEETTS
T ss_pred CceEEEEECCcc
Confidence 457888888653
No 146
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=24.31 E-value=4.7e+02 Score=24.94 Aligned_cols=70 Identities=14% Similarity=0.107 Sum_probs=42.8
Q ss_pred HHHHHHHHHc-CceEEEEEcCCCCCccccCCCCcchhhHHHHh-hc-cccceecceeeeccc---ceeeeeccceeeccE
Q psy1412 169 DLLKSIAAQV-GFHFVLRLVPDHTYGVYDHETKEWNGIVKELM-DK-KADLAVASMTINYAR---ESVIDFTKPFMNLGI 242 (504)
Q Consensus 169 dll~~la~~l-~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~-~g-~~D~av~~~tit~~R---~~~vdFs~p~~~~g~ 242 (504)
+|.+++.++. |.++++..- .-..++.++. +| .+|+.++.-.-..++ ....+-..+|....+
T Consensus 59 ~l~~~Fe~~~pgv~V~~~~g-------------gSg~l~~qi~e~G~~aDVf~sad~~~~~~l~~~g~~~~~~~~a~n~l 125 (354)
T 3k6v_A 59 ELEAEFEAQHPGVDVQREAA-------------GSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQM 125 (354)
T ss_dssp HHHHHHHHHSTTCEEEEEEE-------------CHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCE
T ss_pred HHHHHHHHHCCCcEEEEEeC-------------CHHHHHHHHHhcCCCccEEEECCHHHHHHHHhCCCCCCceEeECCeE
Confidence 6777777776 888887632 2235777775 34 688876532111111 122344578889999
Q ss_pred EEEEEccCC
Q psy1412 243 GILFKVPTS 251 (504)
Q Consensus 243 ~ilv~~~~~ 251 (504)
++++++..+
T Consensus 126 Vliv~~~~p 134 (354)
T 3k6v_A 126 ILAYTNESK 134 (354)
T ss_dssp EEEECTTST
T ss_pred EEEEECCCc
Confidence 999987543
No 147
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=24.01 E-value=71 Score=29.51 Aligned_cols=73 Identities=14% Similarity=0.064 Sum_probs=46.7
Q ss_pred ehhHHHHHHHHHH-cCceEEEEEcCCCCCccccCCCCcchhhHHHHhh-cc-ccceeccee--ee-cccceeeeecccee
Q psy1412 165 GFCIDLLKSIAAQ-VGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMD-KK-ADLAVASMT--IN-YARESVIDFTKPFM 238 (504)
Q Consensus 165 G~~idll~~la~~-l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~-g~-~D~av~~~t--it-~~R~~~vdFs~p~~ 238 (504)
...-++++++.++ -|.++++.. ++-..++.++.+ |. +|+.++.-. +. ......++...||.
T Consensus 17 ~~~~~l~~~F~~~~~gi~V~~~~-------------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~ 83 (292)
T 3cfz_A 17 VPFEEYEKMFEKEHPNVDVEREP-------------AGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFA 83 (292)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEE-------------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEEEe-------------CCHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeE
Confidence 3344677777777 488887763 233468888888 64 898775321 11 11223345567888
Q ss_pred eccEEEEEEccC
Q psy1412 239 NLGIGILFKVPT 250 (504)
Q Consensus 239 ~~g~~ilv~~~~ 250 (504)
...+++++++..
T Consensus 84 ~~~lvi~~~~~~ 95 (292)
T 3cfz_A 84 RNEIVLAYTDKS 95 (292)
T ss_dssp ECCEEEEECTTS
T ss_pred eccEEEEEcCCC
Confidence 999999998754
No 148
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=23.12 E-value=70 Score=29.56 Aligned_cols=72 Identities=8% Similarity=0.113 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHH-cCceEEEEEcCCCCCccccCCCCcchhhHHHHhh-cc-ccceeccee--ee-cccceeeeeccceee
Q psy1412 166 FCIDLLKSIAAQ-VGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMD-KK-ADLAVASMT--IN-YARESVIDFTKPFMN 239 (504)
Q Consensus 166 ~~idll~~la~~-l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~-g~-~D~av~~~t--it-~~R~~~vdFs~p~~~ 239 (504)
..-++++.+.++ -|.++++.. ++...++.++.+ |. +|+.++.-. +. ......++...||..
T Consensus 18 ~~~~l~~~F~~~~~gi~V~~~~-------------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~ 84 (295)
T 3cij_A 18 PMKAFKRAFEEKHPNVEVQTEA-------------AGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAK 84 (295)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEE-------------ECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEEe-------------CcHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEe
Confidence 334677777777 488888763 234458888888 64 898875321 11 122233455678999
Q ss_pred ccEEEEEEccC
Q psy1412 240 LGIGILFKVPT 250 (504)
Q Consensus 240 ~g~~ilv~~~~ 250 (504)
..+++++++..
T Consensus 85 ~~lvl~~~~~~ 95 (295)
T 3cij_A 85 NQIVLAYRNDS 95 (295)
T ss_dssp CCEEEEECTTS
T ss_pred eeEEEEEeCCC
Confidence 99999998754
No 149
>4h1x_A PBP 2, phosphate-binding protein PSTS 2; periplasmic binding protein, PF12849 family; HET: MSE CIT; 1.77A {Streptococcus pneumoniae}
Probab=23.04 E-value=89 Score=28.78 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=37.0
Q ss_pred CCcchhhHHHHhhccccceecceeeecc-cceeeeeccceeeccEEEEEEccCC
Q psy1412 199 TKEWNGIVKELMDKKADLAVASMTINYA-RESVIDFTKPFMNLGIGILFKVPTS 251 (504)
Q Consensus 199 ~g~w~gli~~l~~g~~D~av~~~tit~~-R~~~vdFs~p~~~~g~~ilv~~~~~ 251 (504)
.|+=.| +.++..|.+|++.++-.++.+ ....++ .|....++++++.++.+
T Consensus 191 ~GSg~G-~~~~~~g~~di~~ssr~l~~~e~~~~~~--~~va~d~iavvvn~~n~ 241 (265)
T 4h1x_A 191 NGSSAG-ITAVKEKTADIGMVSRELTPEEGKSLTH--DAIALDGIAVVVNNDNK 241 (265)
T ss_dssp SCHHHH-HHHHHHTSCSEEEESSCCCHHHHTTCEE--EEEEEEEEEEEECTTCC
T ss_pred CCcHHH-HHHHHcCCCceeeccccCChHHHcCCeE--eeEEEEeEEEEECCCCC
Confidence 345444 678899999999998888754 344454 58899999999986543
No 150
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=22.34 E-value=59 Score=30.67 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecce
Q psy1412 169 DLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASM 221 (504)
Q Consensus 169 dll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~ 221 (504)
.+.+++.++.|-++++...+.+..| .-..+++.|..|.+|++....
T Consensus 23 ~fa~~v~e~s~G~i~i~v~~~g~Lg-------~~~~~~e~v~~G~id~~~~~~ 68 (312)
T 2xwv_A 23 MFAKEVKEKSQGKIEISLYPSSQLG-------DDRAMLKQLKDGSLDFTFAES 68 (312)
T ss_dssp HHHHHHHHHTTTSEEEEEECTTTTC-------CHHHHHHHHHHTSCCEEEECG
T ss_pred HHHHHHHHHcCCcEEEEEecCCCCC-------CHHHHHHHHHCCCceEEEeCc
Confidence 4667777778888888887765544 456799999999999987554
No 151
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=22.16 E-value=1.8e+02 Score=26.99 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeee----cc----cceeeeeccceeec
Q psy1412 169 DLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTIN----YA----RESVIDFTKPFMNL 240 (504)
Q Consensus 169 dll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit----~~----R~~~vdFs~p~~~~ 240 (504)
.++..+.+..|+++++.. ++-.-+...|.+|++|+......-+ .+ ....+....-+...
T Consensus 24 ~i~~~~Le~~G~~Ve~~~-------------~~~~~~~~Al~~G~iD~~~~~w~~~~~~~~~~~~~~~~l~~l~~~~~~~ 90 (298)
T 2rin_A 24 ATATTILEALGYETDVKV-------------LSVPVTYTSLKNKDIDVFLGNWMPTMEADIAPYREDKSVETVRENLAGA 90 (298)
T ss_dssp HHHHHHHHHHTCEEEEEC-------------CCHHHHHHHHHHTSCCEEEEEEETTTHHHHHHHHTTTSEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCceEEEE-------------CCcHHHHHHHHcCCcEEEhhhccCchHHHHHHHhhCCCEEEeccCCCCC
Confidence 455666677899998873 2234578899999999987543222 11 12333333223455
Q ss_pred cEEEEEEcc
Q psy1412 241 GIGILFKVP 249 (504)
Q Consensus 241 g~~ilv~~~ 249 (504)
..+++|++.
T Consensus 91 ~~~l~V~~~ 99 (298)
T 2rin_A 91 KYTLATNAK 99 (298)
T ss_dssp EEEEEEEHH
T ss_pred eEEEEEchh
Confidence 678888864
No 152
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=21.76 E-value=28 Score=29.60 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=30.4
Q ss_pred CcccchhHHHHHHHHhhccCC-CCCCcccccccceehcc
Q psy1412 308 NQFSVSNSFWFITGTFLRQGS-GLNPKVLQQGSSRTLDT 345 (504)
Q Consensus 308 ~~~~l~~~~w~~~~~l~~qg~-~~~p~~~~~~s~R~v~~ 345 (504)
...++.+++||++.++...|. ++.|.+. .+|++++
T Consensus 64 ~~~~~~~a~yf~~~T~tTvGyGDi~P~t~---~~r~~~~ 99 (166)
T 3pjs_K 64 QLITYPRALWWSVETATTVGYGDLYPVTL---WGRLVAV 99 (166)
T ss_dssp CCCSTTTTTTTTHHHHSCCCCSSSCCCSS---TTTTTTH
T ss_pred ccCCHHHHHHHHHHHhccccCCCCCCCCH---hHHHHHH
Confidence 346789999999999999996 7899888 9999877
No 153
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=21.38 E-value=1e+02 Score=29.47 Aligned_cols=42 Identities=10% Similarity=0.178 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHc---CceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceec
Q psy1412 166 FCIDLLKSIAAQV---GFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVA 219 (504)
Q Consensus 166 ~~idll~~la~~l---~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~ 219 (504)
-|-+|...+...+ +..++.+..+ ++.+.|..+.+|++|++..
T Consensus 18 KC~~l~~~~~~~~~~~~~~vecv~~~------------dy~~ci~ai~~g~aD~~~l 62 (327)
T 1ryo_A 18 KCQSFRDHMKSVIPSDGPSVACVKKA------------SYLDCIRAIAANEADAVTL 62 (327)
T ss_dssp HHHHHHHHHHHHSCTTSCEEEEEEES------------SHHHHHHHHHTTSCCBEEE
T ss_pred HHHHHHHHHhhccccCCCceEEEecC------------CHHHHHHHHHcCCCcEEEe
Confidence 4556666665556 6678877653 5899999999999999874
No 154
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=21.31 E-value=1.6e+02 Score=27.06 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCceEEEEEcCCCCCccccCCCCcchhhHHHHhhccccceecceeeec-------ccceeeeeccceeec
Q psy1412 168 IDLLKSIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINY-------ARESVIDFTKPFMNL 240 (504)
Q Consensus 168 idll~~la~~l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~g~~D~av~~~tit~-------~R~~~vdFs~p~~~~ 240 (504)
..+...+.+.+|+++++... +-.-+...|.+|++|+......-+. .+...+....-+...
T Consensus 32 ~~i~~~~Le~~G~~Ve~~~~-------------~~~~~~~AL~~G~iD~~~e~w~~~~~~~~~~~~~~~l~~l~~~~~~~ 98 (280)
T 3tmg_A 32 TNVLKVVFEKMGYNAEIFSV-------------TTSIMYQYLASGKIDGTVSSWVPTADKFYYEKLKTKFVDLGANYEGT 98 (280)
T ss_dssp HHHHHHHHHHTTEEEEEEEC-------------CHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCceEEEEC-------------CcHHHHHHHHCCCCcEEEeccCCcccHHHHHHhcCcEEEccccCCCc
Confidence 45677777779999998642 2245788999999999875433221 112333333223344
Q ss_pred cEEEEEEcc
Q psy1412 241 GIGILFKVP 249 (504)
Q Consensus 241 g~~ilv~~~ 249 (504)
..+++||+.
T Consensus 99 ~~~l~V~~~ 107 (280)
T 3tmg_A 99 IQGFVVPSY 107 (280)
T ss_dssp EEEEEEETT
T ss_pred eEEEEECCC
Confidence 688888875
No 155
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=20.62 E-value=97 Score=28.61 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHH-cCceEEEEEcCCCCCccccCCCCcchhhHHHHhh-cc-ccceeccee--ee-cccceeeeeccceee
Q psy1412 166 FCIDLLKSIAAQ-VGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMD-KK-ADLAVASMT--IN-YARESVIDFTKPFMN 239 (504)
Q Consensus 166 ~~idll~~la~~-l~f~~~~~~~~~~~~G~~~~~~g~w~gli~~l~~-g~-~D~av~~~t--it-~~R~~~vdFs~p~~~ 239 (504)
..-++++++.++ -|.++++.. ++-..++.++.+ |. +|+.++.-. +. ......++...||..
T Consensus 18 ~~~~l~~~F~~~~~gi~V~~~~-------------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~ 84 (296)
T 3cfx_A 18 PFEELEAEFEAQHPGVDVQREA-------------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFAR 84 (296)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEE-------------CCHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEEe-------------CchHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEe
Confidence 334677777777 488888763 233568888888 64 898775321 11 122233455678899
Q ss_pred ccEEEEEEccC
Q psy1412 240 LGIGILFKVPT 250 (504)
Q Consensus 240 ~g~~ilv~~~~ 250 (504)
..+++++++..
T Consensus 85 ~~l~i~~~~~~ 95 (296)
T 3cfx_A 85 NQMILAYTNES 95 (296)
T ss_dssp CCEEEEECTTS
T ss_pred eeEEEEEeCCC
Confidence 99999998654
Done!