RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1412
(504 letters)
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat
(Rattus norvegicus), GluR2 [TaxId: 10116]}
Length = 260
Score = 102 bits (253), Expect = 5e-25
Identities = 58/145 (40%), Positives = 79/145 (54%), Gaps = 3/145 (2%)
Query: 354 YQKMWRYMESKKCILFLGGQGDETFVTIDLSQRADSKIEIYQKMWRYMESKRPSVFVSDY 413
+K ++ SKI ++ KMW YM S PSVFV
Sbjct: 113 IKKGTPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTT 172
Query: 414 EEGVKRVLEG--DYAFLMESTMLDYEVQRN-CNLTQIGGLLDSKGYGIATPKGSPWRDRI 470
EGV RV + YA+L+ESTM +Y QR C+ ++GG LDSKGYGIATPKGS + +
Sbjct: 173 AEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAV 232
Query: 471 SLAILELQEKGTIQMLYDKWWKNTG 495
+LA+L+L E+G + L +KWW + G
Sbjct: 233 NLAVLKLNEQGLLDKLKNKWWYDKG 257
Score = 99.3 bits (246), Expect = 4e-24
Identities = 56/110 (50%), Positives = 73/110 (66%), Gaps = 1/110 (0%)
Query: 135 NVTLIVMTREEKPYVMVKNDAN-LTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYG 193
N T++V T E PYVM+K + L GN +EG+C+DL IA GF + L +V D YG
Sbjct: 1 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYG 60
Query: 194 VYDHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIG 243
D +TK WNG+V EL+ KAD+A+A +TI RE VIDF+KPFM+LGI
Sbjct: 61 ARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS 110
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand
binding core {Rat (Rattus norvegicus), GluR5 [TaxId:
10116]}
Length = 246
Score = 93.3 bits (230), Expect = 4e-22
Identities = 62/104 (59%), Positives = 84/104 (80%)
Query: 389 SKIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIG 448
SKI Y+KMW +M S++ S V + +EG++RVL DYA LMEST ++Y QRNCNLTQIG
Sbjct: 143 SKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIG 202
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWK 492
GL+DSKGYG+ TP GSP+RD+I++AIL+LQE+G + M+ +KWW+
Sbjct: 203 GLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWR 246
Score = 83.7 bits (205), Expect = 8e-19
Identities = 65/133 (48%), Positives = 86/133 (64%), Gaps = 2/133 (1%)
Query: 137 TLIVMTREEKPYVMVK-NDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVY 195
TLIV T E+PYVM + +D L GN FEG+C+DLLK ++ +GF + ++LVPD YG
Sbjct: 1 TLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQ 60
Query: 196 DHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTR 255
+ + EWNG+VKEL+D +ADLAVA +TI Y RE VIDF+KPFM LGI IL++ P
Sbjct: 61 N-DKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPIDSADD 119
Query: 256 LFSFMNPLAVEIW 268
L +
Sbjct: 120 LAKQTKIEYGAVR 132
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor
subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId:
10116]}
Length = 277
Score = 83.5 bits (205), Expect = 2e-18
Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 28/156 (17%)
Query: 138 LIVMTREEKPYVMVK-------------------------NDANLTGNAMFEGFCIDLLK 172
L ++T EE P+V+V+ + + +GFCID+LK
Sbjct: 3 LSIVTLEEAPFVIVEDIDPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILK 62
Query: 173 SIAAQVGFHFVLRLVPDHTYGVYDHETKEWNGIVKELMDKKADLAVASMTINYARESVID 232
++ V F + L LV + +G WNG++ E++ ++A +AV S+TIN R V+D
Sbjct: 63 KLSRTVKFTYDLYLVTNGKHG--KKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVD 120
Query: 233 FTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAVEIW 268
F+ PF+ GI ++ F P
Sbjct: 121 FSVPFVETGISVMVSRQ-VTGLSDKKFQRPHDYSPP 155
Score = 73.1 bits (178), Expect = 4e-15
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 394 YQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAF-LMESTMLDYEVQRN--CNLTQIGG- 449
+ + YM E+ + + G + ++ +L+Y+ R+ C L IG
Sbjct: 170 IRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSG 229
Query: 450 -LLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTGDVCN 499
+ + GYGIA KGSPW+ +I LA+L+ G ++ L W +C+
Sbjct: 230 YIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWL---TGICH 277
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 289
Score = 80.1 bits (196), Expect = 3e-17
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 390 KIEIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGD-YAFLMESTMLDYEVQRNCNLTQIG 448
+ M+R+ME E ++ V + +AF+ +S +L++E + C+L G
Sbjct: 184 RQVELSTMYRHMEKHN----YESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTG 239
Query: 449 GLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWWKNTG 495
L G+GI K SPW+ +SL+IL+ E G ++ L W +
Sbjct: 240 ELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQE 286
Score = 73.2 bits (178), Expect = 6e-15
Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 36/146 (24%)
Query: 138 LIVMTREEKPYVMVKNDA--------------------------------NLTGNAMFEG 165
L ++T ++P+V VK T G
Sbjct: 3 LKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYG 62
Query: 166 FCIDLLKSIAAQVGFHFVLRLVPDHTYGVYDH----ETKEWNGIVKELMDKKADLAVASM 221
FCIDLL +A + F + + LV D +G + KEWNG++ EL+ +AD+ VA +
Sbjct: 63 FCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPL 122
Query: 222 TINYARESVIDFTKPFMNLGIGILFK 247
TIN R I+F+KPF G+ IL K
Sbjct: 123 TINNERAQYIEFSKPFKYQGLTILVK 148
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA
{Campylobacter jejuni [TaxId: 197]}
Length = 248
Score = 50.4 bits (119), Expect = 1e-07
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 424 DYAFLMESTMLDYEVQRNCNLTQIGGLLDSKGYGIATPKGSP-WRDRISLAILELQEKGT 482
D + + + I L + A KG ++ I I++L ++
Sbjct: 163 DALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQF 222
Query: 483 IQMLYDKWWK 492
YD+ K
Sbjct: 223 FHKAYDETLK 232
Score = 28.1 bits (61), Expect = 2.4
Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 17/104 (16%)
Query: 137 TLIVMTREE-KPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVY 195
+ + + P+ V N G + I L K IA ++
Sbjct: 12 VVRIGVFGDKPPFGYVDEKGNNQG------YDIALAKRIAKELFGDEN----------KV 55
Query: 196 DHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMN 239
E V+ L K D+ +A+ T R +DF P+M
Sbjct: 56 QFVLVEAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMK 99
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core
{Synechocystis sp., GluR0 [TaxId: 1143]}
Length = 226
Score = 46.3 bits (108), Expect = 2e-06
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 441 NCNLTQIGGLLDSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKW 490
N NL + + YG + SP + I++ +L L I ++W
Sbjct: 175 NLNLEVTEIRVSLEPYGFVLKENSPLQKTINVEMLNLLYSRVIAEFTERW 224
Score = 35.9 bits (81), Expect = 0.006
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 137 TLIVMTREEKPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYD 196
L V P+V N A F G +D+ +++A ++ + G+
Sbjct: 5 ALKVGVVGNPPFVFYGEGKN----AAFTGISLDVWRAVAESQKWNSEYVRQNSISAGITA 60
Query: 197 HETKEWN 203
E +
Sbjct: 61 VAEGELD 67
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli
[TaxId: 562]}
Length = 223
Score = 46.1 bits (108), Expect = 3e-06
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 441 NCNLTQIGGLLDSKGYGIATPKGSP-WRDRISLAILELQEKGTIQMLYDKWW 491
N +G L+++ YGIA PKGS RD+++ A+ L+E GT +Y KW+
Sbjct: 167 NGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGTYNEIYKKWF 218
Score = 40.4 bits (93), Expect = 2e-04
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 21/111 (18%)
Query: 138 LIVMTREE-KPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVYD 196
L+V T P+ + D + GF +DL +IA ++ + L+
Sbjct: 2 LVVATDTAFVPFEFKQGDL-------YVGFDVDLWAAIAKELKLDYELK----------- 43
Query: 197 HETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMNLGIGILFK 247
+++GI+ L K DLA+A +TI R+ IDF+ + G+ ++ K
Sbjct: 44 --PMDFSGIIPALQTKNVDLALAGITITDERKKAIDFSDGYYKSGLLVMVK 92
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO)
protein {Salmonella typhimurium [TaxId: 90371]}
Length = 238
Score = 39.7 bits (91), Expect = 5e-04
Identities = 22/151 (14%), Positives = 41/151 (27%), Gaps = 13/151 (8%)
Query: 348 DSKIEIYQKMWRYMESKKCILFLGGQGDETFVTIDLSQRADSKIEIYQKMWRYMESKRPS 407
D ++ S +G V +Q A + K +
Sbjct: 85 DKLYAADSRLIAAKGSPIQPTLESLKGKHVGVLQGSTQEAYANDNWRTKGVDVVAYANQD 144
Query: 408 VFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRN-------CNLTQIGGLLDSKGYGIAT 460
+ SD G D A E + +++ + G G+
Sbjct: 145 LIYSDLTAG-----RLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGL 199
Query: 461 PKGSP-WRDRISLAILELQEKGTIQMLYDKW 490
K + A+ EL++ GT + K+
Sbjct: 200 RKDDTELKAAFDKALTELRQDGTYDKMAKKY 230
Score = 30.0 bits (66), Expect = 0.60
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 20/104 (19%)
Query: 137 TLIVMTREE-KPYVMVKNDANLTGNAMFEGFCIDLLKSIAAQVGFHFVLRLVPDHTYGVY 195
T+ + T P+ G F IDL + ++
Sbjct: 5 TVRIGTDTTYAPFSSKDAKGEFIG------FDIDLGNEMCKRMQVKCTWVASD------- 51
Query: 196 DHETKEWNGIVKELMDKKADLAVASMTINYARESVIDFTKPFMN 239
++ ++ L KK D ++S++I R+ I F+
Sbjct: 52 ------FDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYA 89
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 477
Score = 29.5 bits (65), Expect = 0.94
Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 30/111 (27%)
Query: 41 YNYINTAEPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGLSLYNYIN---- 96
NY+ ++ + ++++ +A L + + ++ + DG L +++
Sbjct: 367 ENYVQDSKMGFVINAIYAMA--HGLQNMHHALCPGHVGLCDAMKPIDGRKLLDFLIKSSF 424
Query: 97 ------------------TLDLLKLKR-----EELRKVGHWTPAEGINITD 124
D++ L+ + VG W +NI D
Sbjct: 425 VGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDYVHVGTWHE-GVLNIDD 474
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia
coli [TaxId: 562]}
Length = 130
Score = 28.2 bits (63), Expect = 1.0
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 258 SFM-NPLAVEIWLYVLAAYLLVSFTLFVMA 286
F+ NP+ V I L LAA LL + T F +A
Sbjct: 61 DFLQNPVIVIINLITLAAALLHTKTWFELA 90
>d1e5qa2 d.81.1.2 (A:125-391) Saccharopine reductase {Rice blast
fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 267
Score = 27.7 bits (61), Expect = 3.2
Identities = 14/96 (14%), Positives = 19/96 (19%), Gaps = 5/96 (5%)
Query: 42 NYINTAEPALMYDSVHVLAAGLALLDKSSVIKTSNLSCDLEVPWRDGLSLYNYINTLDLL 101
N A D AG L+ + + P RD +
Sbjct: 58 ALRNAAS--FYKDGKVTNVAGPELMATAKPYFIYPGFAFVAYPNRDSTPYKERYQIPEAD 115
Query: 102 KLKREELRKVGH---WTPAEGINITDRSAFYETSTN 134
+ R LR G I
Sbjct: 116 NIVRGTLRYQGFPQFIKVLVDIGFLSDEEQPFLKEA 151
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 27.4 bits (59), Expect = 4.3
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 13/100 (13%)
Query: 392 EIYQKMWRYMESKRPSVFVSDYEEGVKRVLEGDYAFLMESTMLDYEVQRNCNLTQIGGLL 451
++Y ++ +P V + YE VK L +
Sbjct: 34 KVYGPVFTLYFGLKPIVVLHGYE-AVKEALIDLGEEFSGRGIFPL------------AER 80
Query: 452 DSKGYGIATPKGSPWRDRISLAILELQEKGTIQMLYDKWW 491
++G+GI G W++ +++ L+ G + +
Sbjct: 81 ANRGFGIVFSNGKKWKEIRRFSLMTLRNFGMGKRSIEDRV 120
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.410
Gapped
Lambda K H
0.267 0.0377 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,874,307
Number of extensions: 85795
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 23
Length of query: 504
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 415
Effective length of database: 1,185,626
Effective search space: 492034790
Effective search space used: 492034790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.9 bits)