BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14121
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F1N|A Chain A, Structure Of Cdtb, The Biologically Active Subunit Of
Cytolethal Distending Toxin
Length = 262
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 13 NVDNIMSGDNKVDILSKKHSG--PVRALDFNKFQVVATNFKIRAHLWRNLHHHFR 65
NV ++SG+N VDIL+ + +G P A+D + + + +R +W NL + R
Sbjct: 37 NVRQLISGENAVDILAVQEAGSPPSTAVDTGRV-IPSPGIPVRELIW-NLSTNSR 89
>pdb|1O94|C Chain C, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|E Chain E, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|C Chain C, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|E Chain E, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O96|A Chain A, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|C Chain C, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|E Chain E, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|Q Chain Q, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O97|C Chain C, Structure Of Electron Transferring Flavoprotein From
Methylophilus Methylotrophus, Recognition Loop Removed
By Limited Proteolysis
pdb|3CLR|C Chain C, Crystal Structure Of The R236a Etf Mutant From M.
Methylotrophus
pdb|3CLS|C Chain C, Crystal Structure Of The R236c Mutant Of Etf From
Methylophilus Methylotrophus
pdb|3CLT|C Chain C, Crystal Structure Of The R236e Mutant Of Methylophilus
Methylotrophus Etf
pdb|3CLU|C Chain C, Crystal Structure Of The R236k Mutant From Methylophilus
Methylotrophus Etf
Length = 264
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 32/80 (40%)
Query: 20 GDNKVDILSKKHSGPVRALDFNKFQVVATNFKIRAHLWRNLHHHFRVPGKKTFNLILGRL 79
GDNK I + G ++ ++ N V+ I + +L + K + L +
Sbjct: 154 GDNKAVIRRELEGGMLQEVEINCPAVLTIQLGINKPRYASLRGIKQAATKPIEEVSLADI 213
Query: 80 GLGQSFYGNRQSTQRHRSEY 99
GL + G QS R R Y
Sbjct: 214 GLSANDVGAAQSMSRVRRMY 233
>pdb|1PT2|A Chain A, Crystal Structure Of Levansucrase (E342a) Complexed With
Sucrose
Length = 447
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 61 HHHFRVPGKKTFNLILGRLGLGQSFYGNRQST 92
+ HF VP K N+++ + FY ++QST
Sbjct: 385 YSHFAVPQAKGNNVVITSYMTNRGFYADKQST 416
>pdb|1OYG|A Chain A, Crystal Structure Of Bacillus Subtilis Levansucrase
Length = 447
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 61 HHHFRVPGKKTFNLILGRLGLGQSFYGNRQST 92
+ HF VP K N+++ + FY ++QST
Sbjct: 385 YSHFAVPQAKGNNVVITSYMTNRGFYADKQST 416
>pdb|2VDT|A Chain A, Crystallographic Structure Of Levansucrase From Bacillus
Subtilis Mutant S164a
Length = 439
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 61 HHHFRVPGKKTFNLILGRLGLGQSFYGNRQST 92
+ HF VP K N+++ + FY ++QST
Sbjct: 378 YSHFAVPQAKGNNVVITSYMTNRGFYADKQST 409
>pdb|3BYK|A Chain A, Crystal Structure Of B. Subtilis Levansucrase Mutant D247a
Length = 473
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 61 HHHFRVPGKKTFNLILGRLGLGQSFYGNRQST 92
+ HF VP K N+++ + FY ++QST
Sbjct: 411 YSHFAVPQAKGNNVVITSYMTNRGFYADKQST 442
>pdb|3BYJ|A Chain A, Crystal Structure Of B. Subtilis Levansucrase Mutant D86a
Length = 473
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 61 HHHFRVPGKKTFNLILGRLGLGQSFYGNRQST 92
+ HF VP K N+++ + FY ++QST
Sbjct: 411 YSHFAVPQAKGNNVVITSYMTNRGFYADKQST 442
>pdb|3BYL|A Chain A, Crystal Structure Of B. Subtilis Levansucrase Mutant E342a
pdb|3BYN|A Chain A, Crystal Structure Of B. Subtilis Levansucrase Mutant E342a
Bound To Raffinose
Length = 473
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 61 HHHFRVPGKKTFNLILGRLGLGQSFYGNRQST 92
+ HF VP K N+++ + FY ++QST
Sbjct: 411 YSHFAVPQAKGNNVVITSYMTNRGFYADKQST 442
>pdb|3SQI|A Chain A, Dna Binding Domain Of Ndc10
Length = 534
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 21 DNKVDILSKKHSGPVRALDFNKFQVVATNFKIRAHLW 57
+N V +L ++ G V+ L+F+ V+A KI +LW
Sbjct: 82 NNDVLVLQQRLYGLVKLLEFDYSNVIAILQKISINLW 118
>pdb|3T79|A Chain A, Ndc10: A Platform For Inner Kinetochore Assembly In
Budding Yeast
pdb|3T79|D Chain D, Ndc10: A Platform For Inner Kinetochore Assembly In
Budding Yeast
Length = 402
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 21 DNKVDILSKKHSGPVRALDFNKFQVVATNFKIRAHLW 57
+N V +L ++ G V+ L+F+ V+A KI +LW
Sbjct: 82 NNDVLVLQQRLYGLVKLLEFDYSNVIAILQKISINLW 118
>pdb|2VC9|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With 2-Acetamido-1,2-Dideoxynojirmycin
pdb|2VCA|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With Beta-N-Acetyl-D-Glucosamine
pdb|2VCB|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With Pugnac
pdb|2VCC|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
Length = 891
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 11 MYNVDNIMSGDNKVDILSKKHSGPVRALDFNKF 43
M+ +DN+ +G ++D++ +S V + N F
Sbjct: 96 MHTIDNVRAGKIRIDVVQNSNSDRVNIAEINVF 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,073,401
Number of Sequences: 62578
Number of extensions: 147535
Number of successful extensions: 361
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 14
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)