RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14121
         (118 letters)



>gnl|CDD|236733 PRK10672, PRK10672, rare lipoprotein A; Provisional.
          Length = 361

 Score = 34.7 bits (80), Expect = 0.006
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 44  QVVATNFKIRAHLWRN-LHHHFRVPGKKTFNLILGRLGLGQSFYGNRQST----QRHRSE 98
           QV A + + RA  W+  L   F VPG+ T N  + R+ LG   + +RQ      QR ++E
Sbjct: 293 QVGAVSDQQRAQQWQQSLSQRFGVPGRVTQNGAVYRVQLGP--FASRQQASALQQRLQTE 350

Query: 99  YNSPSLI 105
               S I
Sbjct: 351 AQQQSFI 357


>gnl|CDD|224932 COG2021, MET2, Homoserine acetyltransferase [Amino acid transport
           and metabolism].
          Length = 368

 Score = 26.5 bits (59), Expect = 3.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 33  GPVRALDFNKFQVVATNF 50
           GP + +D  +F V+ TN 
Sbjct: 83  GPGKPIDTERFFVICTNV 100


>gnl|CDD|182848 PRK10931, PRK10931, adenosine-3'(2'),5'-bisphosphate
          nucleotidase; Provisional.
          Length = 246

 Score = 26.2 bits (58), Expect = 4.7
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 6  DGIIQMYNVDNIMSGDNKVDILSKKHSGPVRALDFNKFQVVA 47
          D I+Q+Y+      G   +D+ SK    PV A D     V+ 
Sbjct: 14 DAIMQVYD------GTKPLDVASKADDSPVTAADIAAHTVIK 49


>gnl|CDD|223620 COG0546, Gph, Predicted phosphatases [General function prediction
           only].
          Length = 220

 Score = 25.9 bits (57), Expect = 4.8
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 8   IIQMYNVDN---IMSGDNKVDILSKKHSG-PVRALDFNKFQVVATNFKIRAHLWRNLHHH 63
           +++   +D    +M GD+  DIL+ K +G P           V   +  R  L +     
Sbjct: 154 LLEKLGLDPEEALMVGDSLNDILAAKAAGVPAVG--------VTWGYNSREELAQAGADV 205


>gnl|CDD|237336 PRK13288, PRK13288, pyrophosphatase PpaX; Provisional.
          Length = 214

 Score = 26.1 bits (58), Expect = 4.9
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 7/40 (17%)

Query: 17  IMSGDNKVDILSKKHSGPVRALDFNKFQVVATNFKIRAHL 56
           +M GDN  DIL+ K++G        K   VA   K R +L
Sbjct: 159 LMVGDNHHDILAGKNAG-------TKTAGVAWTIKGREYL 191


>gnl|CDD|239399 cd03125, alpha_CA_VI, Carbonic anhydrase alpha, isozyme VI.
           Carbonic anhydrases (CAs) are zinc-containing enzymes
           that catalyze the reversible hydration of carbon dioxide
           in a two-step mechanism: a nucleophilic attack of a
           zinc-bound hydroxide ion on carbon dioxide, followed by
           the regeneration of the active site by ionization of the
           zinc-bound water molecule and removal of a proton from
           the active site. They are ubiquitous enzymes involved in
           fundamental processes like photosynthesis, respiration,
           pH homeostasis and ion transport. There are three
           evolutionary distinct groups - alpha, beta and gamma
           carbonic anhydrases - which show no significant sequence
           identity or structural similarity. Most alpha CAs are
           monomeric enzymes.  The zinc ion is complexed by three
           histidine residues. This sub-family comprises the
           secreted CA VI, which is found in saliva.
          Length = 249

 Score = 25.9 bits (57), Expect = 6.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 48  TNFKIRAHLWRNLHHHFRVPGKKT 71
           T+  +R  L  NLHH++   G  T
Sbjct: 167 TSLDVRDMLPENLHHYYTYQGSLT 190


>gnl|CDD|240373 PTZ00345, PTZ00345, glycerol-3-phosphate dehydrogenase;
          Provisional.
          Length = 365

 Score = 25.4 bits (56), Expect = 8.3
 Identities = 7/26 (26%), Positives = 16/26 (61%)

Query: 6  DGIIQMYNVDNIMSGDNKVDILSKKH 31
             ++M+ ++ I+ G+   DI++ KH
Sbjct: 41 HNEVRMWVLEEIVEGEKLSDIINTKH 66


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.140    0.442 

Gapped
Lambda     K      H
   0.267   0.0777    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,921,797
Number of extensions: 494213
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 14
Length of query: 118
Length of database: 10,937,602
Length adjustment: 81
Effective length of query: 37
Effective length of database: 7,344,928
Effective search space: 271762336
Effective search space used: 271762336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.1 bits)