RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14121
(118 letters)
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 41.2 bits (97), Expect = 2e-05
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 2 GGCDDGIIQMYNVDNIMSGDNKVDILSKKHSGPVRALDFNKFQ 44
G D+G +++Y+ + + N + HS V+ + FN Q
Sbjct: 84 GALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNAKQ 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 32.0 bits (72), Expect = 0.028
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 3 GCDDGIIQMYNVDNIMSGDNKVDILSKKHSGPVRALDF 40
DGI+ +YN+ S D ++ + F
Sbjct: 188 YSPDGILDVYNLS---SPDQASSRFPVDEEAKIKEVKF 222
>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein,
structural genomics center for structural genomics,
JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis}
SCOP: d.17.4.17
Length = 170
Score = 28.8 bits (63), Expect = 0.36
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 8/63 (12%)
Query: 9 IQMYNVDNIMSGDN-------KVDILSKKHSGPVRALDFNKFQVVATN-FKIRAHLWRNL 60
+ +V ++GD + VVATN F+ W+
Sbjct: 90 FFLTDVHVSVTGDTALVTCTENILSGGPPPDDSDELGPLVGQLVVATNVFRRTPDGWKLW 149
Query: 61 HHH 63
HH
Sbjct: 150 SHH 152
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
3gfc_A 3cfs_B 3cfv_B
Length = 430
Score = 27.0 bits (60), Expect = 1.7
Identities = 6/45 (13%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 2 GGCDDGIIQMYNVDNIMS-----GDNKVDILSKKHSGPVRALDFN 41
+ +++ S G+ + D+ + H L +N
Sbjct: 146 TKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWN 190
Score = 26.2 bits (58), Expect = 3.1
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 3 GCDDGIIQMYNVDNIMSGDNKVDILSKKHSGPVRALDFNKFQ--VVAT 48
DD + +++ N + K H+ V L FN + ++AT
Sbjct: 250 VADDQKLMIWDTRNNNTS--KPSHTVDAHTAEVNCLSFNPYSEFILAT 295
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 1.8
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 18/45 (40%)
Query: 12 YNVDN---IMSGDNKVDILSKKHSGPVRALDFNKFQVVATNFKIR 53
YNV+N + +GD +RALD V K++
Sbjct: 1846 YNVENQQYVAAGD-------------LRALD--TVTNVLNFIKLQ 1875
Score = 25.8 bits (56), Expect = 4.4
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 23/93 (24%)
Query: 21 DNKVDILSKKHSGPVRALDFNKFQVVATNFKIRAHLWRN-LH-------HHFRVPGKKTF 72
+ V+ V L +F+ +L N +H KT
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFE--------NCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 73 NLILGRLGLGQSFYGNRQSTQRHRSEYNSPSLI 105
LI +++ R +R + ++ +L
Sbjct: 121 ELI-------KNYITARIMAKRPFDKKSNSALF 146
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 26.4 bits (57), Expect = 3.0
Identities = 4/60 (6%), Positives = 17/60 (28%), Gaps = 9/60 (15%)
Query: 3 GCDDGIIQMYNVDNIMSGDNKVDILSKKHSGPVRALDF-----NKFQVVATNFKIRAHLW 57
G +G + +++ + + H + ++ V +++
Sbjct: 283 GFKNGFVAEFDLTD----PEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIF 338
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 26.0 bits (58), Expect = 3.7
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 71 TFNLILGRLGLGQSFYGNRQSTQ 93
FN ++ + + S+ GNR T+
Sbjct: 280 VFNQVVKSISIVGSYVGNRADTR 302
>2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa
transferase; 2.20A {Leptospira interrogans} SCOP:
c.69.1.40
Length = 366
Score = 25.7 bits (57), Expect = 4.0
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 33 GPVRALDFNKFQVVATN 49
GP ++ D N++ ++ +N
Sbjct: 80 GPGKSFDTNQYFIICSN 96
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B*
4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Length = 383
Score = 25.8 bits (57), Expect = 4.5
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 3 GCDDGIIQMYNVDNIMSGDNKVDILSKKHSGPVRALDFN 41
G G I +++ D + I + + FN
Sbjct: 92 GSKGGDIILWDYD---VQNKTSFIQGMGPGDAITGMKFN 127
>2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway,
coenzyme A, structure-functi studies, alpha-beta
hydrolase fold; 1.65A {Haemophilus influenzae} SCOP:
c.69.1.40
Length = 377
Score = 25.7 bits (57), Expect = 4.6
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 33 GPVRALDFNKFQVVATN 49
G ALD +++ +++N
Sbjct: 89 GAGLALDTDRYFFISSN 105
>3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610,
O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A
{Bacillus anthracis str}
Length = 377
Score = 25.7 bits (57), Expect = 4.6
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 33 GPVRALDFNKFQVVATN 49
GP +A+D N++ V+ T+
Sbjct: 76 GPGKAIDTNQYFVICTD 92
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 25.4 bits (56), Expect = 5.2
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 3 GCDDGIIQMYNVDNIMSGDNKVDILSKKHSGPVRALDF 40
G ++++N + + +V + + PVRA F
Sbjct: 31 TLYSGRVEIWNYE---TQ-VEVRSI-QVTETPVRAGKF 63
>2oct_A Cystatin B; stefin, amyloid, domain-swapping, hand shaking, PR
isomerization, protein binding; 1.40A {Homo sapiens}
PDB: 1stf_I*
Length = 98
Score = 24.5 bits (53), Expect = 5.8
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 42 KFQVVA-TNFKIRAHLWRNLHHHFRV 66
K QVVA TN+ I+ H+ H RV
Sbjct: 44 KSQVVAGTNYFIKVHVGDEDFVHLRV 69
>1cyu_A Cystatin A, stefin A; proteinase inhibitor (cysteine); NMR {Homo
sapiens} SCOP: d.17.1.2 PDB: 1cyv_A 1gd3_A 1dvc_A
1dvd_A 1n9j_A 1nb3_I* 1nb5_I* 3k9m_C 3kfq_C 3kse_D*
1gd4_A
Length = 98
Score = 24.1 bits (52), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 42 KFQVVA-TNFKIRAHLWRNLHHHFRV 66
K QVVA TN+ I+ N + H +V
Sbjct: 44 KTQVVAGTNYYIKVRAGDNKYLHLKV 69
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 24.5 bits (54), Expect = 9.5
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 66 VPGKKTFNLILGRLGLGQSFYGNRQSTQ 93
+ FNLI+ R + S G TQ
Sbjct: 294 HKSPEVFNLIMKRRAIAGSMIGGIPETQ 321
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.442
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,870,263
Number of extensions: 95699
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 32
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)