RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14121
         (118 letters)



>d1nb5i_ d.17.1.2 (I:) Cystatin A (stefin A) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 98

 Score = 28.9 bits (65), Expect = 0.055
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 23 KVDILSK--KHSGPVRALDFNKFQVVA-TNFKIRAHLWRNLHHHFRV 66
          K  +  K  +  G + A+ + K QVVA TN+ I+     N + H +V
Sbjct: 24 KPQLEEKTNETYGKLEAVQY-KTQVVAGTNYYIKVRAGDNKYMHLKV 69


>d1stfi_ d.17.1.2 (I:) Cystatin B (stefin B) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 98

 Score = 27.8 bits (62), Expect = 0.14
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 28 SKKHSGPVRALDFNKFQVVA-TNFKIRAHLWRNLHHHFRV 66
            K     +A+ F K QVVA TN+ I+ H+      H RV
Sbjct: 31 YNKKFPVFKAVSF-KSQVVAGTNYFIKVHVGDEDFVHLRV 69


>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow
          (Bos taurus) [TaxId: 9913]}
          Length = 371

 Score = 27.1 bits (58), Expect = 0.53
 Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 3/40 (7%)

Query: 3  GCDDGIIQMYNVDNIMSGDNKVDILSKKHSGPVRALDFNK 42
            ++  + +Y                K+H+G V  +D+  
Sbjct: 25 CPNNHEVHIYEKSG---NKWVQVHELKEHNGQVTGVDWAP 61


>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 342

 Score = 26.4 bits (56), Expect = 0.95
 Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 3  GCDDGIIQMYNVDNIMSGDNKVDILSKKHSGPVRALDFN 41
             DG + +Y  D      N   + S ++  P+   +F 
Sbjct: 29 TSWDGSLTVYKFDI--QAKNVDLLQSLRYKHPLLCCNFI 65


>d3cnxa1 d.17.4.17 (A:5-157) Uncharacterized protein SAV4671
           {Streptomyces avermitilis [TaxId: 33903]}
          Length = 153

 Score = 24.9 bits (53), Expect = 2.7
 Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 1/61 (1%)

Query: 4   CDDGIIQMYNVDNIMSGDNKVDILSKKHSGPVRALDFNKFQVVATN-FKIRAHLWRNLHH 62
             D  + +     +++    +                    VVATN F+     W+   H
Sbjct: 87  LTDVHVSVTGDTALVTCTENILSGGPPPDDSDELGPLVGQLVVATNVFRRTPDGWKLWSH 146

Query: 63  H 63
           H
Sbjct: 147 H 147


>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 293

 Score = 24.4 bits (51), Expect = 4.5
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 3   GCDDGIIQMYNVDNIMSGDNKVDILSKK----HSGPVRALDFNKFQVVATNFKIRAHLW 57
           G  DG I+++++   +        L  +    HSG V  L F++FQ+V+++      +W
Sbjct: 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292


>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
           7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 342

 Score = 24.4 bits (51), Expect = 5.1
 Identities = 8/39 (20%), Positives = 17/39 (43%)

Query: 3   GCDDGIIQMYNVDNIMSGDNKVDILSKKHSGPVRALDFN 41
             DDG ++++++       N V + S    G V  +  +
Sbjct: 276 SSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 314


>d1xbwa_ d.58.4.5 (A:) Hypothetical protein IsdG {Staphylococcus
          aureus [TaxId: 1280]}
          Length = 109

 Score = 23.7 bits (51), Expect = 5.4
 Identities = 4/37 (10%), Positives = 9/37 (24%)

Query: 41 NKFQVVATNFKIRAHLWRNLHHHFRVPGKKTFNLILG 77
          N+  +     K     +   H    + G     +   
Sbjct: 9  NRLTLTKGTAKDIIERFYTRHGIETLEGFDGMFVTQT 45


>d1fx0a2 b.49.1.1 (A:25-96) F1 ATP synthase alpha subunit, domain
          1 {Spinach (Spinacia oleracea), chloroplast [TaxId:
          3562]}
          Length = 72

 Score = 23.1 bits (50), Expect = 5.7
 Identities = 6/16 (37%), Positives = 13/16 (81%)

Query: 6  DGIIQMYNVDNIMSGD 21
          DGI +++ +D +M+G+
Sbjct: 13 DGIARIHGLDEVMAGE 28


>d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C
          acetyltransferase CefG {Acremonium chrysogenum [TaxId:
          5044]}
          Length = 376

 Score = 23.6 bits (50), Expect = 8.4
 Identities = 5/18 (27%), Positives = 11/18 (61%)

Query: 33 GPVRALDFNKFQVVATNF 50
          G  RA D +++ ++  N+
Sbjct: 68 GQGRAFDTSRYFIICLNY 85


>d1txka2 b.30.5.9 (A:23-396) Glucans biosynthesis protein G (MdoG,
          OpgG), N-terminal domain {Escherichia coli [TaxId:
          562]}
          Length = 374

 Score = 23.5 bits (51), Expect = 9.6
 Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 2/34 (5%)

Query: 33 GPVRALDFNKFQVVATNFKIRAHLWRNLHHHFRV 66
             R + +  +Q     F      W NL   F++
Sbjct: 27 SVFRDMKYADYQ--QIQFNHDKAYWNNLKTPFKL 58


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.442 

Gapped
Lambda     K      H
   0.267   0.0461    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 464,210
Number of extensions: 18818
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 14
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.5 bits)