BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14122
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 59/100 (59%)
Query: 69 WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
WDPKV + + RV + ++E E+Q G + D +G A Q TP+ + K+
Sbjct: 122 WDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAA 181
Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
+ D+ PL+V+ +H++ EP+ F+ V+ + KPF+ EK+++R
Sbjct: 182 VLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKER 221
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 58/100 (58%)
Query: 69 WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
WDPKV + + RV + ++E E+Q G + D +G A Q TP+ + K+
Sbjct: 106 WDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAA 165
Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
+ D+ PL+V+ +H++ EP+ F+ V+ KPF+ EK+++R
Sbjct: 166 VLTDSFPLKVRGIHLINEPVIFHAVFSXIKPFLTEKIKER 205
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 69 WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
W + ++ D+IL+ I + E+Q+ G I+ +F G + +QA + K++
Sbjct: 165 WQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVD 224
Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
+QD+ P R K +H + +P YF + + KPF++ KL +R
Sbjct: 225 MLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLER 264
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%)
Query: 69 WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
W + ++ D+IL+ I + E+Q+ G I+ +F G + +QA + K +
Sbjct: 165 WQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTXQQAASLRTSDLRKXVD 224
Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
+QD+ P K +H + +P YF + + KPF++ KL +R
Sbjct: 225 XLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLER 264
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 15/80 (18%)
Query: 89 AAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDA-------LPLRVKEV 141
A R V ++D G+S A Y +++++++A P R+ +
Sbjct: 158 ACSRAAGHLVETSCTIMDLKGISISSA--------YSVMSYVREASYISQNYYPERMGKF 209
Query: 142 HIVKEPIYFNLVWRLFKPFI 161
+I+ P F+ +RLFKPF+
Sbjct: 210 YIINAPFGFSTAFRLFKPFL 229
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 102 VIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFI 161
I+ D +GL K + + L ++ P +K + +VK P F + + L KPF+
Sbjct: 150 TIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFL 209
Query: 162 REKLQKR 168
E +K+
Sbjct: 210 SEDTRKK 216
>pdb|2QU7|A Chain A, Crystal Structure Of A Putative Transcription Regulator
From Staphylococcus Saprophyticus Subsp. Saprophyticus
pdb|2QU7|B Chain B, Crystal Structure Of A Putative Transcription Regulator
From Staphylococcus Saprophyticus Subsp. Saprophyticus
Length = 288
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 22 IMADPRFRIEDGELSEESKKVAEVELRETPERVQESLRQL---KQMLKGPWDPKVLSTDQ 78
++A+P G + +K ++E +L P + S +QL Q+ G K L +
Sbjct: 128 LLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKG 187
Query: 79 ILRVLYLIHL------AAIREPESQVRGGVIVLDFD 108
I ++ HL AI+E E +++ VI++ FD
Sbjct: 188 IKGIVATNHLLLLGALQAIKESEKEIKKDVIIVGFD 223
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 102 VIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFI 161
I+ D +GL K + + L ++ P +K + +VK P F + + L KPF+
Sbjct: 150 TIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFL 209
Query: 162 REKLQKR 168
E +K+
Sbjct: 210 SEDTRKK 216
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 102 VIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFI 161
I+ D +GL K + + L ++ P +K + +VK P F + + L KPF+
Sbjct: 150 TIIYDCEGLGLKHLWKPAVEAYGEFLCXFEENYPETLKRLFVVKAPKLFPVAYNLIKPFL 209
Query: 162 REKLQKR 168
E +K+
Sbjct: 210 SEDTRKK 216
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM
ITS CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM
ITS CRYSTAL Structure
Length = 354
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 33 GELSEESKKVAEVELRETPERVQESLRQL----KQMLKGPWDPKVLSTD 77
G+L EE K+ +VEL + ERV E+L Q ++ LKG KVL D
Sbjct: 25 GKLEEERAKLHDVELHQVAERV-EALGQFVMKTRRTLKGH-GNKVLCMD 71
>pdb|2FI2|A Chain A, Solution Structure Of The Scan Homodimer From Mzf-1ZNF42
pdb|2FI2|B Chain B, Solution Structure Of The Scan Homodimer From Mzf-1ZNF42
Length = 94
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 55 QESLRQLKQMLKGPWDPKVLSTDQILRVLYLIHLAAIREPESQVR 99
QE+L QL+++ + P+V S +Q+L +L L PE Q R
Sbjct: 25 QEALAQLRELCRQWLRPEVRSKEQMLELLVLEQFLGALPPEIQAR 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,459,170
Number of Sequences: 62578
Number of extensions: 160601
Number of successful extensions: 505
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 39
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)