Query psy14122
Match_columns 168
No_of_seqs 183 out of 1228
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 20:07:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471|consensus 99.9 6.7E-25 1.5E-29 180.9 5.1 134 35-168 54-228 (317)
2 KOG1470|consensus 99.9 5.7E-23 1.2E-27 168.2 8.0 131 35-168 58-216 (324)
3 PF00650 CRAL_TRIO: CRAL/TRIO 99.9 4.6E-23 1E-27 153.1 5.6 102 67-168 27-130 (159)
4 smart00516 SEC14 Domain in hom 99.8 2.4E-20 5.2E-25 138.3 10.4 99 67-168 28-128 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.8 7.2E-19 1.6E-23 128.7 9.2 99 69-168 31-130 (157)
6 PF13716 CRAL_TRIO_2: Divergen 98.0 1.4E-05 3.1E-10 58.7 5.4 84 78-165 29-113 (149)
7 KOG4406|consensus 95.4 0.058 1.3E-06 46.3 6.7 81 79-167 115-195 (467)
8 PF14213 DUF4325: Domain of un 72.5 16 0.00034 23.5 5.4 52 99-155 16-69 (74)
9 PF11964 SpoIIAA-like: SpoIIAA 65.3 26 0.00057 23.5 5.7 79 73-162 10-89 (109)
10 PF04378 RsmJ: Ribosomal RNA s 62.1 7.7 0.00017 31.3 2.7 28 139-166 206-233 (245)
11 PRK02399 hypothetical protein; 61.2 68 0.0015 27.9 8.4 89 68-162 303-403 (406)
12 COG2961 ComJ Protein involved 56.1 12 0.00027 30.4 3.0 28 139-166 237-264 (279)
13 PRK14484 phosphotransferase ma 53.8 47 0.001 23.9 5.4 46 99-158 58-103 (124)
14 COG1915 Uncharacterized conser 43.1 17 0.00037 30.6 1.9 35 11-52 301-337 (415)
15 TIGR03824 FlgM_jcvi flagellar 39.4 60 0.0013 21.9 3.9 39 34-72 42-83 (95)
16 TIGR02364 dha_pts dihydroxyace 34.9 1.7E+02 0.0036 20.9 6.6 49 99-159 60-108 (125)
17 cd07043 STAS_anti-anti-sigma_f 34.9 1.2E+02 0.0027 19.3 5.4 51 101-157 39-89 (99)
18 PRK13291 metal-dependent hydro 34.5 1.1E+02 0.0025 22.8 5.2 59 25-84 8-67 (173)
19 PF02875 Mur_ligase_C: Mur lig 34.4 1.1E+02 0.0024 19.9 4.6 29 99-136 12-40 (91)
20 cd07042 STAS_SulP_like_sulfate 32.8 1.4E+02 0.0031 19.4 5.3 50 101-156 42-91 (107)
21 KOG0534|consensus 30.3 39 0.00084 27.9 2.1 41 122-165 201-241 (286)
22 TIGR02886 spore_II_AA anti-sig 29.5 1.7E+02 0.0037 19.3 5.7 50 101-156 40-89 (106)
23 PF01740 STAS: STAS domain; I 29.4 78 0.0017 21.4 3.3 49 101-155 49-97 (117)
24 KOG2304|consensus 28.0 2.4E+02 0.0052 23.0 6.1 25 127-153 141-165 (298)
25 PF05344 DUF746: Domain of Unk 26.8 1.6E+02 0.0034 18.8 3.9 28 39-66 15-42 (65)
26 KOG3923|consensus 25.9 72 0.0016 26.9 2.9 43 99-154 182-224 (342)
27 TIGR02660 nifV_homocitr homoci 25.3 4.2E+02 0.009 22.4 8.1 81 54-150 108-199 (365)
28 cd07948 DRE_TIM_HCS Saccharomy 24.3 3.7E+02 0.008 21.6 6.8 42 101-150 157-198 (262)
29 PF04838 Baculo_LEF5: Baculovi 24.0 64 0.0014 24.2 2.0 41 122-163 16-58 (159)
30 TIGR00377 ant_ant_sig anti-ant 23.0 2.3E+02 0.005 18.6 5.1 52 100-157 43-94 (108)
31 cd07939 DRE_TIM_NifV Streptomy 22.9 3.9E+02 0.0084 21.2 7.7 81 54-150 105-196 (259)
32 TIGR03279 cyano_FeS_chp putati 22.6 61 0.0013 28.4 2.0 51 11-61 208-260 (433)
33 PF10443 RNA12: RNA12 protein; 22.5 2.1E+02 0.0045 25.2 5.2 68 54-136 1-75 (431)
34 PF05674 DUF816: Baculovirus p 22.5 2.6E+02 0.0057 21.2 5.1 23 67-89 107-130 (171)
35 KOG2305|consensus 22.1 49 0.0011 26.9 1.2 125 28-168 27-168 (313)
36 COG1250 FadB 3-hydroxyacyl-CoA 21.9 48 0.001 27.7 1.2 105 28-151 27-149 (307)
37 PF05997 Nop52: Nucleolar prot 21.7 2.1E+02 0.0045 22.4 4.7 27 41-67 4-30 (217)
38 PLN02746 hydroxymethylglutaryl 21.7 5E+02 0.011 22.0 7.9 69 67-150 187-255 (347)
39 KOG2931|consensus 20.7 1.1E+02 0.0023 25.8 2.9 32 124-155 133-168 (326)
40 PF08269 Cache_2: Cache domain 20.4 2E+02 0.0044 18.8 3.9 18 99-116 56-73 (95)
41 PF15601 Imm42: Immunity prote 20.3 43 0.00093 24.5 0.5 38 6-52 30-67 (134)
No 1
>KOG1471|consensus
Probab=99.91 E-value=6.7e-25 Score=180.87 Aligned_cols=134 Identities=28% Similarity=0.482 Sum_probs=111.4
Q ss_pred CCHHHHHHHHHHhcCCHHHHHHH-HHHHHHH-------H----c-----------------CCCCC------------CC
Q psy14122 35 LSEESKKVAEVELRETPERVQES-LRQLKQM-------L----K-----------------GPWDP------------KV 73 (168)
Q Consensus 35 l~~~~~~~A~~~L~E~~~~R~~~-~~~lr~~-------i----~-----------------g~~dp------------~~ 73 (168)
..++++++|+++|..+..||.+. ++.+-.. . . |..|+ .+
T Consensus 54 a~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~ 133 (317)
T KOG1471|consen 54 ARKFDVEKAKQMLKRYLNWRKRNKLDEIFEDFEEDDELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLK 133 (317)
T ss_pred HccCCHHHHHHHHHHHHHHHHHhCCccHhhccccchhhhhhccccccccCCCCCEEEEeccCCCCcccceeeccHHHHHH
Confidence 46689999999999999999997 2222221 0 0 44443 34
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHHHH
Q psy14122 74 LSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLV 153 (168)
Q Consensus 74 ~s~~~~~r~~~~~~E~~~~~~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~i 153 (168)
++..++.+...+.+|......+.+++|++.|+|++|++++|+++..++.+++++.++|++||+|++++||||+|++|+++
T Consensus 134 ~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~ 213 (317)
T KOG1471|consen 134 YHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSAL 213 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHH
Confidence 55666666666677776666677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcHHhhcC
Q psy14122 154 WRLFKPFIREKLQKR 168 (168)
Q Consensus 154 ~~ivkpfL~~k~~~R 168 (168)
|+++||||+++|++|
T Consensus 214 ~~~ikpfL~~kt~~k 228 (317)
T KOG1471|consen 214 WKVVKPFLDEKTRKK 228 (317)
T ss_pred HHHHhccCCHHHHhh
Confidence 999999999999986
No 2
>KOG1470|consensus
Probab=99.88 E-value=5.7e-23 Score=168.23 Aligned_cols=131 Identities=21% Similarity=0.272 Sum_probs=112.0
Q ss_pred CCHHHHHHHHHHhcCCHHHHHHHHHH----HHHHHc------------------------CCCCCCCCCHHHHHHHHHHH
Q psy14122 35 LSEESKKVAEVELRETPERVQESLRQ----LKQMLK------------------------GPWDPKVLSTDQILRVLYLI 86 (168)
Q Consensus 35 l~~~~~~~A~~~L~E~~~~R~~~~~~----lr~~i~------------------------g~~dp~~~s~~~~~r~~~~~ 86 (168)
...+++++|.+||.++..||.+...+ -.+... ..+.++..|..++.|+.+++
T Consensus 58 Ar~wnv~kA~kml~~tL~WR~~~~~~~~~~~~Ev~~e~~tGK~yi~G~D~~gRPVl~~~~~~~~qn~~t~~~~~r~~Vy~ 137 (324)
T KOG1470|consen 58 ARKWNVKKASKMLSNTLKWRRSFGPEEVIEADEVAAELETGKAYILGHDKDGRPVLYLRPRPHRQNTKTQKELERLLVYT 137 (324)
T ss_pred HcCCcHHHHHHHHHHHhHHHHhcCCccccCHHHHHHHhhcCcEEEecccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHH
Confidence 45678999999999999999996111 122211 23345688999999999999
Q ss_pred HHHHHhcCCCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHHHHHHHHhhhhcHHhh
Q psy14122 87 HLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQ 166 (168)
Q Consensus 87 ~E~~~~~~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~i~~ivkpfL~~k~~ 166 (168)
+|.++.....+++.+++++|++|+|++ ..+.+..+.+++++|++||+||+..+++|+||+|..+|+++|||++++|+
T Consensus 138 mE~Ai~~lp~~qe~~~~L~D~~~fs~s---N~d~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~ 214 (324)
T KOG1470|consen 138 LENAILFLPPGQEQFVWLFDLTGFSMS---NPDIKFLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTA 214 (324)
T ss_pred HHHHHHhCCCCcceEEEEEecccCccc---CCCcHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhh
Confidence 999997666556889999999999999 56899999999999999999999999999999999999999999999998
Q ss_pred cC
Q psy14122 167 KR 168 (168)
Q Consensus 167 ~R 168 (168)
++
T Consensus 215 ~K 216 (324)
T KOG1470|consen 215 SK 216 (324)
T ss_pred ce
Confidence 64
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.88 E-value=4.6e-23 Score=153.08 Aligned_cols=102 Identities=28% Similarity=0.657 Sum_probs=84.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhc-CC-CeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEE
Q psy14122 67 GPWDPKVLSTDQILRVLYLIHLAAIRE-PE-SQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIV 144 (168)
Q Consensus 67 g~~dp~~~s~~~~~r~~~~~~E~~~~~-~~-~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iI 144 (168)
|++|++.++.+++.++.++.+|.++.. ++ .+++|+++|+|++|++++++...+++.++.+++++|++||+|++++|++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ii 106 (159)
T PF00650_consen 27 GRFDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLSNFDWWPISFLKKIIQLLQDHYPERLGKIYII 106 (159)
T ss_dssp TT--HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEE
T ss_pred ccCCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEeccccchhhhhhhhhhhhcccCCccceeEEEE
Confidence 788999999999999999999999854 33 5799999999999999998865558999999999999999999999999
Q ss_pred eCChhHHHHHHHHhhhhcHHhhcC
Q psy14122 145 KEPIYFNLVWRLFKPFIREKLQKR 168 (168)
Q Consensus 145 N~P~~f~~i~~ivkpfL~~k~~~R 168 (168)
|+|++|+++|++++|||++++++|
T Consensus 107 n~p~~~~~~~~~~~~~l~~~~~~k 130 (159)
T PF00650_consen 107 NAPWFFRVLWKIVKPFLSPKTREK 130 (159)
T ss_dssp S--TTHHHHHHHHGGGS-HHHHCT
T ss_pred ecChhhhhhHhHHHhhcCHhhhee
Confidence 999999999999999999999987
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.83 E-value=2.4e-20 Score=138.28 Aligned_cols=99 Identities=27% Similarity=0.585 Sum_probs=93.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhc--CCCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEE
Q psy14122 67 GPWDPKVLSTDQILRVLYLIHLAAIRE--PESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIV 144 (168)
Q Consensus 67 g~~dp~~~s~~~~~r~~~~~~E~~~~~--~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iI 144 (168)
++++++.++.++++++.++.+|.++.+ +..++.|+++|+|++|++++| ++++.+|+++..++++||+|++++||+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~---~~~~~lk~~~~~~~~~yp~~l~~i~iv 104 (158)
T smart00516 28 GRFDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSN---PDLSVLRKILKILQDHYPERLGKVLII 104 (158)
T ss_pred cccccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCccc---ccHHHHHHHHHHHHHHhHHHhCeEEEE
Confidence 678889999999999999999999976 667799999999999999997 578999999999999999999999999
Q ss_pred eCChhHHHHHHHHhhhhcHHhhcC
Q psy14122 145 KEPIYFNLVWRLFKPFIREKLQKR 168 (168)
Q Consensus 145 N~P~~f~~i~~ivkpfL~~k~~~R 168 (168)
|+|+++.++|++++||+++++++|
T Consensus 105 n~p~~~~~~~~~~~~~l~~~~~~k 128 (158)
T smart00516 105 NPPWFFRVLWKIIKPFLDEKTREK 128 (158)
T ss_pred CCCHHHHHHHHHHHhhcChhhhcc
Confidence 999999999999999999999876
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.78 E-value=7.2e-19 Score=128.70 Aligned_cols=99 Identities=34% Similarity=0.640 Sum_probs=89.9
Q ss_pred CCCCC-CCHHHHHHHHHHHHHHHHhcCCCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCC
Q psy14122 69 WDPKV-LSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEP 147 (168)
Q Consensus 69 ~dp~~-~s~~~~~r~~~~~~E~~~~~~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P 147 (168)
.++.. .+.++++++.++.+|.++.++..+..|+++|+|++|++++++. .+++.+++++++++++||+|++++|++|+|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~-~~~~~~k~~~~~~~~~yp~~l~~v~ivn~p 109 (157)
T cd00170 31 KDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLL-PDPSLLKKILKILQDNYPERLKAVYIINPP 109 (157)
T ss_pred cchhhcCCHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCChhccc-hhHHHHHHHHHHHHHhChHhhCeEEEECCC
Confidence 34443 3449999999999999998887777899999999999999887 688899999999999999999999999999
Q ss_pred hhHHHHHHHHhhhhcHHhhcC
Q psy14122 148 IYFNLVWRLFKPFIREKLQKR 168 (168)
Q Consensus 148 ~~f~~i~~ivkpfL~~k~~~R 168 (168)
++|..+|+++++|+++++++|
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~k 130 (157)
T cd00170 110 WFFKVLWKIVKPFLSEKTRKK 130 (157)
T ss_pred HhHHHHHHHHHHhcCHhhhhh
Confidence 999999999999999999876
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=97.98 E-value=1.4e-05 Score=58.72 Aligned_cols=84 Identities=19% Similarity=0.328 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHhcCCCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHHHHH-HH
Q psy14122 78 QILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVW-RL 156 (168)
Q Consensus 78 ~~~r~~~~~~E~~~~~~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~i~-~i 156 (168)
|.-+...+++..+..+. ...+.++|+|++|++..+ ..+.+.++++...+...|+..++++||+|+++++..++ .+
T Consensus 29 ~~~~ll~yl~~~l~~~~--~~~~f~vVid~~~~~~~~--~~~~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~ 104 (149)
T PF13716_consen 29 DLERLLLYLLSTLSEEV--VDKPFSVVIDHTGFSRSS--EPSLSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATL 104 (149)
T ss_dssp HHHHHHHHHHHHH-TTT--TTS-EEEEEE-TT--GGG-----HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHh--cCCCEEEEEEcCCCcccc--CCchHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHH
Confidence 56666666666654432 236799999999998853 33577899999999999999999999999999999999 66
Q ss_pred HhhhhcHHh
Q psy14122 157 FKPFIREKL 165 (168)
Q Consensus 157 vkpfL~~k~ 165 (168)
.+++.+.+.
T Consensus 105 ~~~~~~~~~ 113 (149)
T PF13716_consen 105 LRPFVSSKF 113 (149)
T ss_dssp TTTGGGGTT
T ss_pred hcccccccc
Confidence 677777765
No 7
>KOG4406|consensus
Probab=95.36 E-value=0.058 Score=46.34 Aligned_cols=81 Identities=16% Similarity=0.316 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhcCCCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHHHHHHHHh
Q psy14122 79 ILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFK 158 (168)
Q Consensus 79 ~~r~~~~~~E~~~~~~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~i~~ivk 158 (168)
++++.++.+|..++++ ++.++=-.|+....- -....+.....-+..+|---++.+|+|++-|+..++|+++|
T Consensus 115 li~~~v~~id~~Ve~D------Yt~vYfh~gl~s~nk--p~l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~k 186 (467)
T KOG4406|consen 115 LISYLVYTIDKYVEND------YTLVYFHHGLPSDNK--PYLQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFK 186 (467)
T ss_pred HHHHHHHHHHHHHhcc------ceeeehhcCCccccc--chHHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHh
Confidence 8899999999988765 445544555544421 12333444444444458888999999999999999999999
Q ss_pred hhhcHHhhc
Q psy14122 159 PFIREKLQK 167 (168)
Q Consensus 159 pfL~~k~~~ 167 (168)
||++.|-.+
T Consensus 187 plIS~KF~r 195 (467)
T KOG4406|consen 187 PLISLKFTR 195 (467)
T ss_pred hhcchhhhc
Confidence 999998654
No 8
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=72.54 E-value=16 Score=23.46 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=38.2
Q ss_pred ccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccc--eeeeeEEEEeCChhHHHHHH
Q psy14122 99 RGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALP--LRVKEVHIVKEPIYFNLVWR 155 (168)
Q Consensus 99 ~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP--~Rl~~i~iIN~P~~f~~i~~ 155 (168)
.|-.+++|++|++. ++.+++-.++.-+...|| .--+.+.++|+......+.+
T Consensus 16 ~~~~V~lDF~gv~~-----~~ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I~ 69 (74)
T PF14213_consen 16 EGEKVVLDFEGVES-----ITSSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMIK 69 (74)
T ss_pred cCCeEEEECCCccc-----ccHHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHHH
Confidence 34448999999944 477888888888888888 44578899998776655443
No 9
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=65.31 E-value=26 Score=23.49 Aligned_cols=79 Identities=11% Similarity=0.201 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeeccEEEEEeCC-CCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHH
Q psy14122 73 VLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFD-GLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFN 151 (168)
Q Consensus 73 ~~s~~~~~r~~~~~~E~~~~~~~~qi~G~v~I~Dl~-g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~ 151 (168)
..|.+|+-+ ..-.++..+.. -..+-+++|++ ++. .+++........+... ....++++-+|-.+.+..
T Consensus 10 ~~t~ed~~~-~~~~~~~~~~~----~~~~~ll~d~~~~~~-----~~~~~a~~~~~~~~~~-~~~~~~r~AvV~~~~~~~ 78 (109)
T PF11964_consen 10 KLTEEDYKE-LLPALEELIAD----HGKIRLLVDLRRDFE-----GWSPEARWEDAKFGLK-HLKHFRRIAVVGDSEWIR 78 (109)
T ss_dssp EE-HHHHHH-HHHHHHHHHTT----SSSEEEEEEEC-CEE-----EEHHHHHHHHHHHHCC-CCGGEEEEEEE-SSCCCH
T ss_pred eeCHHHHHH-HHHHHHHHHhc----CCceEEEEEecCccC-----CCCHHHHHHHHHhchh-hhcccCEEEEEECcHHHH
Confidence 356677766 34444444442 13467888888 651 2345555555555555 888899999999999999
Q ss_pred HHHHHHhhhhc
Q psy14122 152 LVWRLFKPFIR 162 (168)
Q Consensus 152 ~i~~ivkpfL~ 162 (168)
.+.+++.+|.+
T Consensus 79 ~~~~~~~~~~~ 89 (109)
T PF11964_consen 79 MIANFFAAFPP 89 (109)
T ss_dssp HHHHHHHHH-S
T ss_pred HHHHHHHhcCC
Confidence 99999988733
No 10
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=62.11 E-value=7.7 Score=31.28 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=22.5
Q ss_pred eeEEEEeCChhHHHHHHHHhhhhcHHhh
Q psy14122 139 KEVHIVKEPIYFNLVWRLFKPFIREKLQ 166 (168)
Q Consensus 139 ~~i~iIN~P~~f~~i~~ivkpfL~~k~~ 166 (168)
.++.|||+||-+.-...-+-|+|.+.+.
T Consensus 206 SGm~iiNPPw~l~~~l~~~l~~L~~~L~ 233 (245)
T PF04378_consen 206 SGMLIINPPWTLDEELEEILPWLAETLA 233 (245)
T ss_dssp EEEEEES--TTHHHHHHHHHHHHHHHSS
T ss_pred ceEEEEcCCccHHHHHHHHHHHHHHHhC
Confidence 5799999999999999999999887654
No 11
>PRK02399 hypothetical protein; Provisional
Probab=61.17 E-value=68 Score=27.88 Aligned_cols=89 Identities=11% Similarity=0.192 Sum_probs=67.9
Q ss_pred CCCCC----CCCHHHHHHHHHHHHHHHHhcCCCeeccEEEEEeCCCCCcccc-cc--cCHHHHHHHHHHhhhccceeeee
Q psy14122 68 PWDPK----VLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQA-LQ--FTPTFSYKLLTFIQDALPLRVKE 140 (168)
Q Consensus 68 ~~dp~----~~s~~~~~r~~~~~~E~~~~~~~~qi~G~v~I~Dl~g~sl~~~-~~--~~~~~~k~~~~~~q~~yP~Rl~~ 140 (168)
.|||. ..+++|..+..-++.|.+-... .-+.+++-++|+|.-.. .+ .+|..-..+++.++++.+..+.
T Consensus 303 ~HNp~vTlmRTt~eE~~~~g~~ia~kLn~a~----gpv~vllP~~G~S~~D~~G~~f~Dpead~alf~~l~~~l~~~~~- 377 (406)
T PRK02399 303 KHNPQVTLMRTTPEENRQIGRWIAEKLNRAK----GPVAFLIPLGGVSALDRPGQPFHDPEADAAFFDALEETVTETRR- 377 (406)
T ss_pred ecCCcceeeecCHHHHHHHHHHHHHHHhcCC----CCeEEEEeCCCCccccCCCCCccChhHHHHHHHHHHHhCCCCce-
Confidence 46665 4599999999999999984332 34779999999988552 11 3788888899999999977644
Q ss_pred EEE-----EeCChhHHHHHHHHhhhhc
Q psy14122 141 VHI-----VKEPIYFNLVWRLFKPFIR 162 (168)
Q Consensus 141 i~i-----IN~P~~f~~i~~ivkpfL~ 162 (168)
.+ ||.|.|...+...+.-++.
T Consensus 378 -v~~~~~hIND~~FA~a~~~~l~~~~~ 403 (406)
T PRK02399 378 -LIEVPAHINDPEFAEAAVEAFEELMA 403 (406)
T ss_pred -EEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 34 7999999999888776664
No 12
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=56.11 E-value=12 Score=30.40 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=24.6
Q ss_pred eeEEEEeCChhHHHHHHHHhhhhcHHhh
Q psy14122 139 KEVHIVKEPIYFNLVWRLFKPFIREKLQ 166 (168)
Q Consensus 139 ~~i~iIN~P~~f~~i~~ivkpfL~~k~~ 166 (168)
.++.+||+||-+.--...+-|+|...+-
T Consensus 237 SGMivINPPwtle~ql~~~LP~L~~~L~ 264 (279)
T COG2961 237 SGMIVINPPWTLEQQLRAALPWLTTLLA 264 (279)
T ss_pred eeEEEECCCccHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999987653
No 13
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=53.81 E-value=47 Score=23.88 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=30.8
Q ss_pred ccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHHHHHHHHh
Q psy14122 99 RGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFK 158 (168)
Q Consensus 99 ~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~i~~ivk 158 (168)
+|++++.|+ |-|.. -....+.++.+- ++++++++|-+=..+-..+.
T Consensus 58 dGVlVltDL-Gssp~--------n~~~a~e~~~~~-----~~v~~~daPlVEGa~~Aav~ 103 (124)
T PRK14484 58 DGVLIFFDL-GSAEM--------NAEMAIEMLDGE-----KKIIIIDAPIVEGAFTAAVL 103 (124)
T ss_pred CCeEEEEeC-CChHH--------HHHHHHHhcCCC-----CcEEEECCcHHHHHHHHHHH
Confidence 899999999 75543 233344444322 88999999987665554443
No 14
>COG1915 Uncharacterized conserved protein [Function unknown]
Probab=43.13 E-value=17 Score=30.57 Aligned_cols=35 Identities=29% Similarity=0.232 Sum_probs=26.0
Q ss_pred ccCCCCccccCcCCCCceeeccCCCCH--HHHHHHHHHhcCCHH
Q psy14122 11 LNKISPFSSVSIMADPRFRIEDGELSE--ESKKVAEVELRETPE 52 (168)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~A~~~L~E~~~ 52 (168)
-|+.||+|-+++-|+| |||| -++-+|+++.+|..+
T Consensus 301 kNniPfvLAGSIRDDG-------PlPdvitdvm~Aq~~m~~~l~ 337 (415)
T COG1915 301 KNNIPFVLAGSIRDDG-------PLPDVITDVMEAQEEMREHLQ 337 (415)
T ss_pred hcCCCeEEecccccCC-------CCchHHHHHHHHHHHHHHHhc
Confidence 3789999999998887 6777 456677776665443
No 15
>TIGR03824 FlgM_jcvi flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.
Probab=39.44 E-value=60 Score=21.89 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=31.7
Q ss_pred CCCHH--HHHHHHHHhcCCHHHHHHHHHHHHHHHc-CCCCCC
Q psy14122 34 ELSEE--SKKVAEVELRETPERVQESLRQLKQMLK-GPWDPK 72 (168)
Q Consensus 34 ~l~~~--~~~~A~~~L~E~~~~R~~~~~~lr~~i~-g~~dp~ 72 (168)
.+|+. .+..+.+.+.+.|+.|.+-+++|++-|. |.+.++
T Consensus 42 ~lS~~a~~l~~~~~~~~~~p~v~~~kV~~ik~aI~~G~Y~vd 83 (95)
T TIGR03824 42 TLSSAAQQLQSLEAALASSPDVDAEKVAEIKAAIANGSYKVD 83 (95)
T ss_pred EECHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHcCCCCCC
Confidence 35553 4567788999999999999999999987 887774
No 16
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=34.92 E-value=1.7e+02 Score=20.89 Aligned_cols=49 Identities=16% Similarity=0.256 Sum_probs=33.9
Q ss_pred ccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHHHHHHHHhh
Q psy14122 99 RGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKP 159 (168)
Q Consensus 99 ~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~i~~ivkp 159 (168)
+|++++.|+ |-|.-+ ...++.+++ +...+.+..+|+|-+-..+...+..
T Consensus 60 dgVlvl~DL-Ggs~~n--------~e~a~~~l~---~~~~~~v~g~nlPlvega~~aa~~~ 108 (125)
T TIGR02364 60 DGVLIFYDL-GSAVMN--------AEMAVELLE---DEDRDKVHLVDAPLVEGAFAAAVEA 108 (125)
T ss_pred CCEEEEEcC-CCcHhH--------HHHHHHHhc---cccccEEEEechhHHHHHHHHHHHH
Confidence 789999999 765531 112333443 3555789999999999888776654
No 17
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=34.85 E-value=1.2e+02 Score=19.32 Aligned_cols=51 Identities=20% Similarity=0.090 Sum_probs=33.6
Q ss_pred EEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHHHHHHHH
Q psy14122 101 GVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLF 157 (168)
Q Consensus 101 ~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~i~~iv 157 (168)
-.+|+|+++++.- +.+.+..+..+.+.+-+ +=+.+.+++.|.-..-++..+
T Consensus 39 ~~viid~~~v~~i-----Ds~g~~~L~~l~~~~~~-~g~~v~i~~~~~~~~~~l~~~ 89 (99)
T cd07043 39 RRLVLDLSGVTFI-----DSSGLGVLLGAYKRARA-AGGRLVLVNVSPAVRRVLELT 89 (99)
T ss_pred CEEEEECCCCCEE-----cchhHHHHHHHHHHHHH-cCCeEEEEcCCHHHHHHHHHh
Confidence 4578999997653 44445555555554333 346799999998777666654
No 18
>PRK13291 metal-dependent hydrolase; Provisional
Probab=34.49 E-value=1.1e+02 Score=22.83 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=46.3
Q ss_pred CCceeeccCCCCHHHHHHHHHHhcCCHHHHHHHHHHH-HHHHcCCCCCCCCCHHHHHHHHH
Q psy14122 25 DPRFRIEDGELSEESKKVAEVELRETPERVQESLRQL-KQMLKGPWDPKVLSTDQILRVLY 84 (168)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~A~~~L~E~~~~R~~~~~~l-r~~i~g~~dp~~~s~~~~~r~~~ 84 (168)
+|.|+ ...+.+.++++...+.|.++++.-.+.++.+ .+++.....+.+.|+.+++.+.+
T Consensus 8 ~~~~~-~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~lsee~l~~~~~~gkWSi~Evl~HL~ 67 (173)
T PRK13291 8 IGQFQ-YPEEITEEQIQEWIAEIEALPNELRAAVSGLSDEQLDTPYREGGWTVRQVVHHVA 67 (173)
T ss_pred CCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHcCCCCCCCCcHHHHHHHHH
Confidence 45443 3456788999999999988888888888777 56677778888999999988875
No 19
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=34.37 E-value=1.1e+02 Score=19.85 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=22.9
Q ss_pred ccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccce
Q psy14122 99 RGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPL 136 (168)
Q Consensus 99 ~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~ 136 (168)
+|..+|.|+.+ +|.-++.+++.+.+.||.
T Consensus 12 ~~~~vi~D~ah---------Np~s~~a~l~~l~~~~~~ 40 (91)
T PF02875_consen 12 NGPTVIDDYAH---------NPDSIRALLEALKELYPK 40 (91)
T ss_dssp TTEEEEEET-----------SHHHHHHHHHHHHHHCTT
T ss_pred CCcEEEEECCC---------CHHHHHHHHHHHHHhccC
Confidence 58899999433 678899999999988884
No 20
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=32.76 E-value=1.4e+02 Score=19.36 Aligned_cols=50 Identities=16% Similarity=0.120 Sum_probs=32.9
Q ss_pred EEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHHHHHHH
Q psy14122 101 GVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRL 156 (168)
Q Consensus 101 ~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~i~~i 156 (168)
-.+|+|+++++.= +-+.+..+..+.+..- .+=+.+++.|.|.-..-++..
T Consensus 42 ~~lilD~~~v~~i-----Dss~~~~L~~~~~~~~-~~~~~~~l~~~~~~~~~~l~~ 91 (107)
T cd07042 42 KVVILDLSAVNFI-----DSTAAEALEELVKDLR-KRGVELYLAGLNPQVRELLER 91 (107)
T ss_pred eEEEEECCCCchh-----hHHHHHHHHHHHHHHH-HCCCEEEEecCCHHHHHHHHH
Confidence 4678999998653 5555666665554432 334779999999866555543
No 21
>KOG0534|consensus
Probab=30.35 E-value=39 Score=27.92 Aligned_cols=41 Identities=24% Similarity=0.320 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhccceeeeeEEEEeCChhHHHHHHHHhhhhcHHh
Q psy14122 122 FSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKL 165 (168)
Q Consensus 122 ~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~i~~ivkpfL~~k~ 165 (168)
.+|+-+.-++..||+|++.-++++.|. -.|+--++|+++.+
T Consensus 201 Llr~eL~~la~~~p~rf~~~y~v~~~~---~~w~~~~g~It~~~ 241 (286)
T KOG0534|consen 201 LLREELEELASKYPERFKVWYVVDQPP---EIWDGSVGFITKDL 241 (286)
T ss_pred chHHHHHHHHhhCcceEEEEEEEcCCc---ccccCccCccCHHH
Confidence 478889999999999999999999998 67887788887765
No 22
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=29.50 E-value=1.7e+02 Score=19.33 Aligned_cols=50 Identities=10% Similarity=0.038 Sum_probs=31.6
Q ss_pred EEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHHHHHHH
Q psy14122 101 GVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRL 156 (168)
Q Consensus 101 ~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~i~~i 156 (168)
-.+|+||++++.= +-+.+..+....+.+- .+=+.++++|.+.-..-++..
T Consensus 40 ~~vilDls~v~~i-----Dssgi~~L~~~~~~~~-~~g~~l~l~~~~~~v~~~l~~ 89 (106)
T TIGR02886 40 KHLILNLKNVTFM-----DSSGLGVILGRYKKIK-NEGGEVIVCNVSPAVKRLFEL 89 (106)
T ss_pred CEEEEECCCCcEe-----cchHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHH
Confidence 4699999998763 3333443333333322 234789999998877766654
No 23
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=29.39 E-value=78 Score=21.43 Aligned_cols=49 Identities=16% Similarity=0.162 Sum_probs=33.1
Q ss_pred EEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHHHHHH
Q psy14122 101 GVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWR 155 (168)
Q Consensus 101 ~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~i~~ 155 (168)
-.+|+||++++. ++.+.+..+.++.+++- .+=..++++|.+.-....+.
T Consensus 49 ~~vIlD~s~v~~-----iDssgi~~L~~~~~~~~-~~g~~~~l~~~~~~v~~~l~ 97 (117)
T PF01740_consen 49 KNVILDMSGVSF-----IDSSGIQALVDIIKELR-RRGVQLVLVGLNPDVRRILE 97 (117)
T ss_dssp SEEEEEETTESE-----ESHHHHHHHHHHHHHHH-HTTCEEEEESHHHHHHHHHH
T ss_pred eEEEEEEEeCCc-----CCHHHHHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHH
Confidence 569999999855 35555665666665544 45567999998776665544
No 24
>KOG2304|consensus
Probab=28.00 E-value=2.4e+02 Score=23.03 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=19.3
Q ss_pred HHHhhhccceeeeeEEEEeCChhHHHH
Q psy14122 127 LTFIQDALPLRVKEVHIVKEPIYFNLV 153 (168)
Q Consensus 127 ~~~~q~~yP~Rl~~i~iIN~P~~f~~i 153 (168)
...+| -|.|+.++|+.|++.++..+
T Consensus 141 a~~~~--~~srf~GlHFfNPvPvMKLv 165 (298)
T KOG2304|consen 141 ASATQ--RPSRFAGLHFFNPVPVMKLV 165 (298)
T ss_pred Hhhcc--ChhhhceeeccCCchhHHHh
Confidence 33444 59999999999999987644
No 25
>PF05344 DUF746: Domain of Unknown Function (DUF746); InterPro: IPR008008 This is a short conserved region found in some transposons.
Probab=26.77 E-value=1.6e+02 Score=18.84 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHc
Q psy14122 39 SKKVAEVELRETPERVQESLRQLKQMLK 66 (168)
Q Consensus 39 ~~~~A~~~L~E~~~~R~~~~~~lr~~i~ 66 (168)
.+..|.++|+-++....+.+..+|+|+-
T Consensus 15 s~~~Aa~~lG~~~~~v~~wv~~fR~wll 42 (65)
T PF05344_consen 15 SVAQAADRLGTDPGTVRRWVRMFRQWLL 42 (65)
T ss_pred cHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999985
No 26
>KOG3923|consensus
Probab=25.91 E-value=72 Score=26.87 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=35.1
Q ss_pred ccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHHHHH
Q psy14122 99 RGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVW 154 (168)
Q Consensus 99 ~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~i~ 154 (168)
.+.-+|++|.|+.-+.+..- ++.||.| +.|.-|.|||+...++
T Consensus 182 ~~~DVivNCtGL~a~~L~gD------------d~~yPiR-GqVl~V~ApWvkhf~~ 224 (342)
T KOG3923|consen 182 PEYDVIVNCTGLGAGKLAGD------------DDLYPIR-GQVLKVDAPWVKHFIY 224 (342)
T ss_pred CCCcEEEECCccccccccCC------------cceeecc-ceEEEeeCCceeEEEE
Confidence 67889999999999877542 3489999 7789999999877655
No 27
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=25.26 E-value=4.2e+02 Score=22.35 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHc-----------CCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeeccEEEEEeCCCCCcccccccCHHH
Q psy14122 54 VQESLRQLKQMLK-----------GPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTF 122 (168)
Q Consensus 54 R~~~~~~lr~~i~-----------g~~dp~~~s~~~~~r~~~~~~E~~~~~~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~ 122 (168)
|++.++.+.+.+. +..|....+++.+.++.-.+.|. . ...+.+-|.-|. .+|..
T Consensus 108 ~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~-----G---a~~i~l~DT~G~-------~~P~~ 172 (365)
T TIGR02660 108 RAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEA-----G---ADRFRFADTVGI-------LDPFS 172 (365)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHc-----C---cCEEEEcccCCC-------CCHHH
Confidence 4445555555554 44455566776666655444332 2 234788888883 46888
Q ss_pred HHHHHHHhhhccceeeeeEEEEeCChhH
Q psy14122 123 SYKLLTFIQDALPLRVKEVHIVKEPIYF 150 (168)
Q Consensus 123 ~k~~~~~~q~~yP~Rl~~i~iIN~P~~f 150 (168)
+..++..+.+.++..+ ++|.-|.....
T Consensus 173 v~~lv~~l~~~~~v~l-~~H~HNd~GlA 199 (365)
T TIGR02660 173 TYELVRALRQAVDLPL-EMHAHNDLGMA 199 (365)
T ss_pred HHHHHHHHHHhcCCeE-EEEecCCCChH
Confidence 8888888888887665 69999987543
No 28
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=24.27 E-value=3.7e+02 Score=21.62 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=33.3
Q ss_pred EEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhH
Q psy14122 101 GVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYF 150 (168)
Q Consensus 101 ~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f 150 (168)
.+.+-|.-|. .+|..+..++..+.+.+|..+ ++|.-|.....
T Consensus 157 ~i~l~Dt~G~-------~~P~~v~~~~~~~~~~~~~~i-~~H~Hn~~Gla 198 (262)
T cd07948 157 RVGIADTVGI-------ATPRQVYELVRTLRGVVSCDI-EFHGHNDTGCA 198 (262)
T ss_pred EEEECCcCCC-------CCHHHHHHHHHHHHHhcCCeE-EEEECCCCChH
Confidence 4788888883 478889899998888999666 79999986543
No 29
>PF04838 Baculo_LEF5: Baculoviridae late expression factor 5 ; InterPro: IPR006923 This is a family of Baculoviridae late expression factor 5, required for late and very late gene expression.; GO: 0006355 regulation of transcription, DNA-dependent
Probab=23.95 E-value=64 Score=24.16 Aligned_cols=41 Identities=17% Similarity=0.317 Sum_probs=34.6
Q ss_pred HHHHHHHHhhhccceeee--eEEEEeCChhHHHHHHHHhhhhcH
Q psy14122 122 FSYKLLTFIQDALPLRVK--EVHIVKEPIYFNLVWRLFKPFIRE 163 (168)
Q Consensus 122 ~~k~~~~~~q~~yP~Rl~--~i~iIN~P~~f~~i~~ivkpfL~~ 163 (168)
..+.++.++-.+||.-++ ...++|..-.|..+|+.+ |-++.
T Consensus 16 ~y~~LI~fL~~nyp~nVKNkTFNF~nTGHlFHsLYAYv-P~~s~ 58 (159)
T PF04838_consen 16 DYKELIDFLITNYPKNVKNKTFNFANTGHLFHSLYAYV-PSVSN 58 (159)
T ss_pred CHHHHHHHHHhhcccccccCeeecCCCchhhhhhhhcc-CCCch
Confidence 367789999999999999 999999999999999865 44444
No 30
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=23.05 E-value=2.3e+02 Score=18.59 Aligned_cols=52 Identities=12% Similarity=0.015 Sum_probs=32.6
Q ss_pred cEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHHHHHHHH
Q psy14122 100 GGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLF 157 (168)
Q Consensus 100 G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~i~~iv 157 (168)
.-.+++|+++++.=. ......+..+..-+++ +=+.+.++|.+.-..-++...
T Consensus 43 ~~~vvidls~v~~iD--ssgl~~L~~~~~~~~~----~~~~~~l~~~~~~~~~~l~~~ 94 (108)
T TIGR00377 43 PRPIVLDLEDLEFMD--SSGLGVLLGRYKQVRR----VGGQLVLVSVSPRVARLLDIT 94 (108)
T ss_pred CCeEEEECCCCeEEc--cccHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHHHHh
Confidence 346999999876532 2234444444444432 336799999888777766643
No 31
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=22.87 E-value=3.9e+02 Score=21.16 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHc-----------CCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeeccEEEEEeCCCCCcccccccCHHH
Q psy14122 54 VQESLRQLKQMLK-----------GPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTF 122 (168)
Q Consensus 54 R~~~~~~lr~~i~-----------g~~dp~~~s~~~~~r~~~~~~E~~~~~~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~ 122 (168)
|++.++.+.+.+. +..|....+++.+....-.+.+. . ...+.|.|--| ..+|..
T Consensus 105 ~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----G---~~~i~l~DT~G-------~~~P~~ 169 (259)
T cd07939 105 RAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEA-----G---ADRLRFADTVG-------ILDPFT 169 (259)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHC-----C---CCEEEeCCCCC-------CCCHHH
Confidence 4455555555554 44445566776666555444332 1 22478888887 347888
Q ss_pred HHHHHHHhhhccceeeeeEEEEeCChhH
Q psy14122 123 SYKLLTFIQDALPLRVKEVHIVKEPIYF 150 (168)
Q Consensus 123 ~k~~~~~~q~~yP~Rl~~i~iIN~P~~f 150 (168)
+..++..+.+.+|..+ ++|.-|.....
T Consensus 170 v~~lv~~l~~~~~~~l-~~H~Hn~~Gla 196 (259)
T cd07939 170 TYELIRRLRAATDLPL-EFHAHNDLGLA 196 (259)
T ss_pred HHHHHHHHHHhcCCeE-EEEecCCCChH
Confidence 9999999989999554 79999987654
No 32
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=22.60 E-value=61 Score=28.43 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=43.6
Q ss_pred ccCCCCccccCcCCCC--ceeeccCCCCHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy14122 11 LNKISPFSSVSIMADP--RFRIEDGELSEESKKVAEVELRETPERVQESLRQL 61 (168)
Q Consensus 11 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~A~~~L~E~~~~R~~~~~~l 61 (168)
.+.+|.+.|+..-+.| .|+..+.+|.|++.+.|++.+..-..|-++..++.
T Consensus 208 ~~~~P~v~S~avVPVGlTk~R~~l~~l~~~~~e~A~~vi~~ie~~q~~~~~~~ 260 (433)
T TIGR03279 208 DGDWPTVLSVAVVPVGLTRFRPEEDELTPVTPECARRVIAQVEALQTQFQRQL 260 (433)
T ss_pred ccCCCceeEEEEEccccccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 3678999999988988 88888999999999999999988888888876544
No 33
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=22.53 E-value=2.1e+02 Score=25.19 Aligned_cols=68 Identities=21% Similarity=0.343 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCCC-------CCCCCHHHHHHHHHHHHHHHHhcCCCeeccEEEEEeCCCCCcccccccCHHHHHHH
Q psy14122 54 VQESLRQLKQMLKGPWD-------PKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKL 126 (168)
Q Consensus 54 R~~~~~~lr~~i~g~~d-------p~~~s~~~~~r~~~~~~E~~~~~~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~ 126 (168)
|.+.+++|+.|+...-| |....-.+ ++++.++.+... +.++||+.+--+ +-+..+++.+
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~e------lV~d~~L~~r~~-----vL~IDC~~i~~a---r~D~~~I~~l 66 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRE------LVMDHVLKDRKN-----VLVIDCDQIVKA---RGDAAFIKNL 66 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccH------HHHHHHHhCCCC-----EEEEEChHhhhc---cChHHHHHHH
Confidence 56778899999982222 34333333 345666665442 899999998654 3466677777
Q ss_pred HHHhhhccce
Q psy14122 127 LTFIQDALPL 136 (168)
Q Consensus 127 ~~~~q~~yP~ 136 (168)
..-+. ++|.
T Consensus 67 A~qvG-Y~Pv 75 (431)
T PF10443_consen 67 ASQVG-YFPV 75 (431)
T ss_pred HHhcC-CCcc
Confidence 77665 7776
No 34
>PF05674 DUF816: Baculovirus protein of unknown function (DUF816); InterPro: IPR008534 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf106. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family includes proteins that are about 200 amino acids in length. The proteins are all from baculoviruses. This family includes ORF107 from Orgyia pseudotsugata multicapsid polyhedrosis virus (OpMNPV) and a variety of other numbered ORF proteins, such as ORF52 Q91F03 from SWISSPROT, ORF140 Q9YMI8 from SWISSPROT from other baculoviruses. The function of these proteins is unknown.
Probab=22.49 E-value=2.6e+02 Score=21.19 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=18.7
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHHH
Q psy14122 67 GPWDPK-VLSTDQILRVLYLIHLA 89 (168)
Q Consensus 67 g~~dp~-~~s~~~~~r~~~~~~E~ 89 (168)
.+.||+ +.|+.+++++.--++|.
T Consensus 107 ~~inpdlksSP~amLqhYnecle~ 130 (171)
T PF05674_consen 107 DKINPDLKSSPRAMLQHYNECLEN 130 (171)
T ss_pred hcCCCccccCHHHHHHHHHHHHHh
Confidence 567787 78999999998888883
No 35
>KOG2305|consensus
Probab=22.09 E-value=49 Score=26.93 Aligned_cols=125 Identities=15% Similarity=0.199 Sum_probs=69.4
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCC--------CCCHHHHHHHHHHHHHHHHhcCCC---
Q psy14122 28 FRIEDGELSEESKKVAEVELRETPERVQESLRQLKQMLKGPWDPK--------VLSTDQILRVLYLIHLAAIREPES--- 96 (168)
Q Consensus 28 ~~~~~~~l~~~~~~~A~~~L~E~~~~R~~~~~~lr~~i~g~~dp~--------~~s~~~~~r~~~~~~E~~~~~~~~--- 96 (168)
|+..+-...+..+.-|.+++.++...-++. . .+.|+...+ ..+..++.+-.+++.|....+-+.
T Consensus 27 yqVqlYDI~e~Ql~~ALen~~Kel~~Lee~--g---~lrGnlsa~eqla~is~t~~l~E~vk~Ai~iQEcvpE~L~lkk~ 101 (313)
T KOG2305|consen 27 YQVQLYDILEKQLQTALENVEKELRKLEEH--G---LLRGNLSADEQLALISGTTSLNELVKGAIHIQECVPEDLNLKKQ 101 (313)
T ss_pred ceEEEeeccHHHHHHHHHHHHHHHHHHHHh--h---hhccCccHHHHHHHHhCCccHHHHHhhhhhHHhhchHhhHHHHH
Confidence 666666688888888888776655544443 1 122443332 458889999999999887644321
Q ss_pred ---e---eccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHHHHHHHHhhhhcHHhhcC
Q psy14122 97 ---Q---VRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168 (168)
Q Consensus 97 ---q---i~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~~i~~ivkpfL~~k~~~R 168 (168)
| +.+-..|+--+. ..+-|+.+..-+.--+. +=-.|=||+|.++..+=-+=-||-++.+.+|
T Consensus 102 ly~qlD~i~d~~tIlaSST------St~mpS~~s~gL~~k~q-----~lvaHPvNPPyfiPLvElVPaPwTsp~tVdr 168 (313)
T KOG2305|consen 102 LYKQLDEIADPTTILASST------STFMPSKFSAGLINKEQ-----CLVAHPVNPPYFIPLVELVPAPWTSPDTVDR 168 (313)
T ss_pred HHHHHHHhcCCceEEeccc------cccChHHHhhhhhhhhh-----eeEecCCCCCcccchheeccCCCCChhHHHH
Confidence 2 222223322111 12345443333222222 2346778888887655444467766665543
No 36
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=21.85 E-value=48 Score=27.67 Aligned_cols=105 Identities=13% Similarity=0.122 Sum_probs=55.1
Q ss_pred eeeccCCCCHHHHHHHHHHhcCCHHHHHHH-------HHHHHHHHcCCCC------CC-----CCCHHHHHHHHHHHHHH
Q psy14122 28 FRIEDGELSEESKKVAEVELRETPERVQES-------LRQLKQMLKGPWD------PK-----VLSTDQILRVLYLIHLA 89 (168)
Q Consensus 28 ~~~~~~~l~~~~~~~A~~~L~E~~~~R~~~-------~~~lr~~i~g~~d------p~-----~~s~~~~~r~~~~~~E~ 89 (168)
|+..+...+++.+++|...+.++.+...+. .+.....|...-| .+ -+--.++-+-.+-.+|.
T Consensus 27 ~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~~~DlVIEAv~E~levK~~vf~~l~~ 106 (307)
T COG1250 27 YDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALKDADLVIEAVVEDLELKKQVFAELEA 106 (307)
T ss_pred CceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhccCCEEEEeccccHHHHHHHHHHHHh
Confidence 667777778888888887776664443332 1111222221111 11 12233444444445555
Q ss_pred HHhcCCCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeCChhHH
Q psy14122 90 AIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFN 151 (168)
Q Consensus 90 ~~~~~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~P~~f~ 151 (168)
....+ .++=-+-+++ +++.+...+ ..|+|+-++|+.|+|.++.
T Consensus 107 ~~~~~------aIlASNTSsl--------~it~ia~~~-----~rper~iG~HFfNP~~~m~ 149 (307)
T COG1250 107 LAKPD------AILASNTSSL--------SITELAEAL-----KRPERFIGLHFFNPVPLMP 149 (307)
T ss_pred hcCCC------cEEeeccCCC--------CHHHHHHHh-----CCchhEEEEeccCCCCcce
Confidence 44322 1222222222 333333333 6999999999999998764
No 37
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=21.70 E-value=2.1e+02 Score=22.39 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=21.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHcC
Q psy14122 41 KVAEVELRETPERVQESLRQLKQMLKG 67 (168)
Q Consensus 41 ~~A~~~L~E~~~~R~~~~~~lr~~i~g 67 (168)
.-|++-=..++..|+.++..++.||..
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~ 30 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSK 30 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHh
Confidence 345556667999999999999999983
No 38
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=21.69 E-value=5e+02 Score=22.01 Aligned_cols=69 Identities=14% Similarity=-0.015 Sum_probs=45.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeeccEEEEEeCCCCCcccccccCHHHHHHHHHHhhhccceeeeeEEEEeC
Q psy14122 67 GPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKEVHIVKE 146 (168)
Q Consensus 67 g~~dp~~~s~~~~~r~~~~~~E~~~~~~~~qi~G~v~I~Dl~g~sl~~~~~~~~~~~k~~~~~~q~~yP~Rl~~i~iIN~ 146 (168)
|..+....+++.+....--..|. . ...+.|-|.-|. .+|..+..++..+.+.+|...=.+|.-|.
T Consensus 187 g~p~~~r~~~~~l~~~~~~~~~~-----G---ad~I~l~DT~G~-------a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd 251 (347)
T PLN02746 187 GCPIEGPVPPSKVAYVAKELYDM-----G---CYEISLGDTIGV-------GTPGTVVPMLEAVMAVVPVDKLAVHFHDT 251 (347)
T ss_pred cCCccCCCCHHHHHHHHHHHHHc-----C---CCEEEecCCcCC-------cCHHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 34444556666655554333332 2 235788888875 36888999999988889964447899998
Q ss_pred ChhH
Q psy14122 147 PIYF 150 (168)
Q Consensus 147 P~~f 150 (168)
..+.
T Consensus 252 ~GlA 255 (347)
T PLN02746 252 YGQA 255 (347)
T ss_pred CChH
Confidence 6553
No 39
>KOG2931|consensus
Probab=20.71 E-value=1.1e+02 Score=25.77 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=24.3
Q ss_pred HHHHHHhhhccceeeeeEEEEeC----ChhHHHHHH
Q psy14122 124 YKLLTFIQDALPLRVKEVHIVKE----PIYFNLVWR 155 (168)
Q Consensus 124 k~~~~~~q~~yP~Rl~~i~iIN~----P~~f~~i~~ 155 (168)
..++.-+.-+.|+|+-++.+||+ |.|.+++++
T Consensus 133 AyIL~rFAl~hp~rV~GLvLIn~~~~a~gwiew~~~ 168 (326)
T KOG2931|consen 133 AYILARFALNHPERVLGLVLINCDPCAKGWIEWAYN 168 (326)
T ss_pred HHHHHHHHhcChhheeEEEEEecCCCCchHHHHHHH
Confidence 33445555689999999999996 777777665
No 40
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=20.43 E-value=2e+02 Score=18.78 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=12.9
Q ss_pred ccEEEEEeCCCCCccccc
Q psy14122 99 RGGVIVLDFDGLSTKQAL 116 (168)
Q Consensus 99 ~G~v~I~Dl~g~sl~~~~ 116 (168)
.|+++|+|.+|..+.|-.
T Consensus 56 ~gY~fi~d~~g~~l~hp~ 73 (95)
T PF08269_consen 56 DGYFFIYDMDGVVLAHPS 73 (95)
T ss_dssp TB--EEE-TTSBEEEESS
T ss_pred CCeEEEEeCCCeEEEcCC
Confidence 799999999999988843
No 41
>PF15601 Imm42: Immunity protein 42
Probab=20.28 E-value=43 Score=24.50 Aligned_cols=38 Identities=21% Similarity=0.059 Sum_probs=27.2
Q ss_pred HhhhcccCCCCccccCcCCCCceeeccCCCCHHHHHHHHHHhcCCHH
Q psy14122 6 QQRFQLNKISPFSSVSIMADPRFRIEDGELSEESKKVAEVELRETPE 52 (168)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~A~~~L~E~~~ 52 (168)
.+.-++-++|.+ .=+.|.+.|+.+++++|.++|.+-.+
T Consensus 30 E~~~wGskfP~L---------m~~LY~g~L~~~~~~~A~~eL~~I~~ 67 (134)
T PF15601_consen 30 ENEGWGSKFPLL---------MNELYRGYLRYEELEKALKELEEIRK 67 (134)
T ss_pred hccCCCCcchHH---------HHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 334455556655 56779999999999999998865433
Done!