RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14122
(168 letters)
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain.
Length = 152
Score = 83.1 bits (206), Expect = 6e-21
Identities = 35/103 (33%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 67 GPWDPKVLSTDQILRVLYLIHLAAIRE-PESQVRGGVIVLDFDGLSTKQALQFTPTFSYK 125
G DPK S ++++R L L+ A+ PE Q+ G +++D GLS ++ +F K
Sbjct: 22 GRHDPKKSSLEELVRFLVLVLERALLLLPEGQIEGITVIIDMKGLSLSNMDKWPISFLKK 81
Query: 126 LLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
+L +QD P R+ ++ IV P FN++W+L KPF+ K +++
Sbjct: 82 ILKILQDNYPERLGKILIVNAPWIFNVIWKLIKPFLDPKTREK 124
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain. Found in
secretory proteins, such as S. cerevisiae
phosphatidylinositol transfer protein (Sec14p), and in
lipid regulated proteins such as RhoGAPs, RhoGEFs and
neurofibromin (NF1). SEC14 domain of Dbl is known to
associate with G protein beta/gamma subunits.
Length = 157
Score = 78.6 bits (194), Expect = 4e-19
Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 69 WDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLT 128
K L ++++LR L ++E + QV G V+++D GLS L P+ K+L
Sbjct: 32 DLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLL-PDPSLLKKILK 90
Query: 129 FIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
+QD P R+K V+I+ P +F ++W++ KPF+ EK +K+
Sbjct: 91 ILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKK 130
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S. cerevisiae
phosphatidylinositol transfer protein (Sec14p). Domain
in homologues of a S. cerevisiae phosphatidylinositol
transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and
the RasGAP, neurofibromin (NF1). Lipid-binding domain.
The SEC14 domain of Dbl is known to associate with G
protein beta/gamma subunits.
Length = 158
Score = 61.9 bits (151), Expect = 9e-13
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 67 GPWDPKVLSTDQILR--VLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSY 124
G +D K ++ +++LR V L + + + G ++ D GLS +
Sbjct: 28 GRFDLKSVTLEELLRYLVYVLEKILQEEKKTGGIEGFTVIFDLKGLSMSN---PDLSVLR 84
Query: 125 KLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
K+L +QD P R+ +V+I+ P +F ++W++ KPF+ EK +++
Sbjct: 85 KILKILQDHYPERLGKVYIINPPWFFRVLWKIIKPFLDEKTREK 128
>gnl|CDD|131711 TIGR02663, nifX, nitrogen fixation protein NifX. Members of this
family are NifX proteins encoded within operons for
nitrogen fixation in a number of bacteria. NifX, NafY,
and the C-terminal region of NifB all belong to the Pfam
family pfam02579 and are involved in MoFe cofactor
biosynthesis. NifX is a nitrogenase accessory protein
with a role in expression of the MoFe cofactor
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other, Central intermediary metabolism,
Nitrogen fixation].
Length = 119
Score = 28.9 bits (65), Expect = 0.74
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 39 SKKVAEVELRETPERVQESLRQLKQMLKG---PWDPKVL 74
+ K+ +++ E PE + E L +L++MLKG PW K L
Sbjct: 82 AAKIHPIKVNE-PESISELLERLQKMLKGNPPPWLRKAL 119
>gnl|CDD|226650 COG4187, RocB, Arginine degradation protein (predicted deacylase)
[Amino acid transport and metabolism].
Length = 553
Score = 29.0 bits (65), Expect = 1.2
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 34 ELSEESKKVAEVELRETPERVQESLRQLKQMLKGP-----WDPKVLSTDQIL 80
EL + K+ AE E E +++ + +++ P P+VL+ ++L
Sbjct: 313 ELFDRLKEEAETAAEEAIETLRDRYEEYGKLVNRPAGPLPAKPRVLTFQELL 364
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175).
Length = 820
Score = 28.3 bits (64), Expect = 2.2
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 29 RIEDGELSEESKKVAEVELRETPERVQESLRQ 60
RIEDG+LS+ AE LR ER+ E+L
Sbjct: 461 RIEDGDLSD-----AERRLRRAQERLSEALEN 487
>gnl|CDD|234320 TIGR03706, exo_poly_only, exopolyphosphatase. It appears that a
single enzyme may act as both exopolyphosphatase (Ppx)
and guanosine pentaphosphate phosphohydrolase (GppA) in
a number of species. Members of the seed alignment use
to define this exception-level model are encoded
adjacent to a polyphosphate kinase 1 gene, and the
trusted cutoff is set high enough (425) that no genome
has a second hit. Therefore all members may be presumed
to at least share exopolyphospatase activity, and may
lack GppA activity. GppA acts in the stringent response
[Central intermediary metabolism, Phosphorus compounds].
Length = 300
Score = 27.9 bits (63), Expect = 2.5
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 16 PFSSVSIMADPRFRIEDGELSEESKKVAEVELRETPERVQESLRQLKQMLKGPWDPKVLS 75
P V + +F DG +S++S K A R E L LK + KG W P
Sbjct: 154 PLGCVRLTE--QF-FPDGPISKKSLKQARTAAR-------EELASLKWLKKGGWRPLYGV 203
Query: 76 TDQILRVLYLIHLAAIREPESQVRGGVI 103
R L IH+A P + G I
Sbjct: 204 GGTW-RALARIHMAQRNYPLHGLHGYTI 230
>gnl|CDD|176876 cd08867, START_STARD4_5_6-like, Lipid-binding START domain of
mammalian STARD4, -5, -6, and related proteins. This
subfamily includes the steroidogenic acute regulatory
protein (StAR)-related lipid transfer (START) domains
of mammalian STARD4, -5, and -6. The START domain
family belongs to the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily of proteins that bind hydrophobic ligands.
SRPBCC domains have a deep hydrophobic ligand-binding
pocket. STARD4 plays an important role in
steroidogenesis, trafficking cholesterol into
mitochondria. It specifically binds cholesterol, and
demonstrates limited binding to another sterol,
7a-hydroxycholesterol. STARD4 and STARD5 are
ubiquitously expressed, with highest levels in liver
and kidney. STRAD5 functions in the kidney within the
proximal tubule cells where it is associated with the
Endoplasmic Reticulum (ER), and may participate in
ER-associated cholesterol transport. It binds
cholesterol and 25-hydroxycholesterol. Expression of
the gene encoding STARD5 is increased by ER stress, and
its mRNA and protein levels are elevated in a type I
diabetic mouse model of human diabetic nephropathy.
STARD6 is expressed in male germ cells of normal rats,
and in the steroidogenic Leydig cells of perinatal
hypothyroid testes. It may play a pivotal role in the
steroidogenesis as well as in the spermatogenesis of
normal rats. STARD6 has also been detected in the rat
nervous system, and may participate in neurosteroid
synthesis.
Length = 206
Score = 27.4 bits (61), Expect = 3.6
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 43 AEVELRETPERVQESLRQLKQMLKGPWDPKVLSTDQILRV 82
AE + PE+V + + L+ WD + + + ++
Sbjct: 50 AEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKI 89
>gnl|CDD|113237 pfam04458, DUF505, Protein of unknown function (DUF505). Family of
uncharacterized prokaryotic proteins.
Length = 591
Score = 27.1 bits (60), Expect = 5.2
Identities = 32/131 (24%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 27 RFRIEDGELSEESKKVAEVELRETP--ERVQESLRQLKQMLKGPWDPKVLST-------- 76
R E+G L+E K V E+ P E +++M GP + L T
Sbjct: 116 RGLAEEGGLTEYGKAVLEIYRETHPKLYVTPEVAGYIRKMPPGPGELDELITYKSTLPYG 175
Query: 77 DQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPL 136
D I L + L AI P +G L G +AL+ P L I +
Sbjct: 176 DNIFLALEAMRLLAISPPTE--KGDAYALTGLGQEVLKALRKAPVAMDAL---ILRKIME 230
Query: 137 RVKEVHIVKEP 147
V ++E
Sbjct: 231 DFVAVEELEEG 241
>gnl|CDD|220103 pfam09074, Mer2, Mer2. Mer2 (Rec107) forms part of a complex
that is required for meiotic double strand DNA break
formation. Mer2 increases in abundance and is
phosphorylated during the prophase phase of cell
division. Blocking double strand break formation
results in delayed dephosphorylation and dissociation
of Mer2 from the chromosome.
Length = 190
Score = 26.0 bits (57), Expect = 8.2
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 9/61 (14%)
Query: 15 SPFSSVSIMADPRFRIEDGELSEESKKVAE---------VELRETPERVQESLRQLKQML 65
S S S D R L E K++ E ++L+E E++ L + L
Sbjct: 1 STDGSSSTPKDDPLRSGRSTLEEADKQILEWAGKLELESIDLKEKAEKLINILNNNSKEL 60
Query: 66 K 66
Sbjct: 61 N 61
>gnl|CDD|132014 TIGR02969, mam_aldehyde_ox, aldehyde oxidase. Members of this family
are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes,
closely related to xanthine dehydrogenase/oxidase.
Length = 1330
Score = 26.5 bits (58), Expect = 9.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 94 PESQVRGGVIVLDFDGLSTKQALQ 117
P + GG +V D +GL+ K A Q
Sbjct: 1073 PNTNASGGSVVADLNGLAVKDACQ 1096
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.393
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,729,398
Number of extensions: 809991
Number of successful extensions: 1089
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1083
Number of HSP's successfully gapped: 45
Length of query: 168
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 78
Effective length of database: 6,945,742
Effective search space: 541767876
Effective search space used: 541767876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)