RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14122
         (168 letters)



>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 185

 Score = 87.8 bits (217), Expect = 5e-23
 Identities = 33/102 (32%), Positives = 59/102 (57%)

Query: 67  GPWDPKVLSTDQILRVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKL 126
             WDPKV +   + RV  +     ++E E+Q  G   + D +G     A Q TP+ + K+
Sbjct: 30  AHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKI 89

Query: 127 LTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
              + D+ PL+V+ +H++ EP+ F+ V+ + KPF+ EK+++R
Sbjct: 90  AAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKER 131


>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF),
           middle domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 199

 Score = 61.6 bits (149), Expect = 7e-13
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 11/113 (9%)

Query: 67  GPWDPKVL----STDQILRVLYLIH-------LAAIREPESQVRGGVIVLDFDGLSTKQA 115
           GP D K L    S   +LR                  +   +V    I+ D +GL  K  
Sbjct: 29  GPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHL 88

Query: 116 LQFTPTFSYKLLTFIQDALPLRVKEVHIVKEPIYFNLVWRLFKPFIREKLQKR 168
            +       + L   ++  P  +K + +VK P  F + + L KPF+ E  +K+
Sbjct: 89  WKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKK 141


>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of
           phosphatidylinositol transfer protein sec14p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 203

 Score = 54.0 bits (129), Expect = 4e-10
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 1/88 (1%)

Query: 81  RVLYLIHLAAIREPESQVRGGVIVLDFDGLSTKQALQFTPTFSYKLLTFIQDALPLRVKE 140
            V+     A  R     V     ++D  G+S   A      +  +     Q+  P R+ +
Sbjct: 57  SVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMS-YVREASYISQNYYPERMGK 115

Query: 141 VHIVKEPIYFNLVWRLFKPFIREKLQKR 168
            +I+  P  F+  +RLFKPF+      +
Sbjct: 116 FYIINAPFGFSTAFRLFKPFLDPVTVSK 143


>d2fi2a1 a.28.3.2 (A:37-128) Zinc finger protein 42 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 92

 Score = 24.7 bits (54), Expect = 2.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 52 ERVQESLRQLKQMLKGPWDPKVLSTDQILRVLYLIHLAAIREPESQVR 99
             QE+L QL+++ +    P+V S +Q+L +L L        PE Q R
Sbjct: 20 TGPQEALAQLRELCRQWLRPEVRSKEQMLELLVLEQFLGALPPEIQAR 67


>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella
          typhimurium [TaxId: 90371]}
          Length = 417

 Score = 25.3 bits (55), Expect = 4.8
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 10/52 (19%)

Query: 15 SPFSSVSIMADPRFRIEDGELSEESKKVAEVELRETPERVQESLRQLKQMLK 66
          +PF+  ++ ADP+  I       + K+     LR     VQ    +L   + 
Sbjct: 1  TPFTHETLPADPKAAI------RQMKQ----ALRAQIGDVQAVFDRLSATIA 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.393 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 615,536
Number of extensions: 27390
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 11
Length of query: 168
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,322,926
Effective search space: 117740414
Effective search space used: 117740414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)