BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14123
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q641M3|TMM18_DANRE Transmembrane protein 18 OS=Danio rerio GN=tmem18 PE=2 SV=1
Length = 152
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 42/52 (80%)
Query: 17 LFILLVYFSENLNEFAHNNWRSFARHEYFDEKGMFISIVFSIPLLLNCMILV 68
L + +VY +E LNE A NWRSF++ +YFD KGMFIS+V+S+PLLLN +I+V
Sbjct: 69 LMVAMVYSAEYLNELAAMNWRSFSKFQYFDSKGMFISLVYSVPLLLNTVIIV 120
>sp|Q96B42|TMM18_HUMAN Transmembrane protein 18 OS=Homo sapiens GN=TMEM18 PE=1 SV=2
Length = 140
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 46/65 (70%)
Query: 19 ILLVYFSENLNEFAHNNWRSFARHEYFDEKGMFISIVFSIPLLLNCMILVLKRKYTCKEP 78
++LVY +E +NE A NWR F++++YFD +GMFISIVFS PLL+N MI+V+ +
Sbjct: 60 VILVYCAEYINEAAAMNWRLFSKYQYFDSRGMFISIVFSAPLLVNAMIIVVMWVWKTLNV 119
Query: 79 YPNLK 83
+LK
Sbjct: 120 MTDLK 124
>sp|Q3SZ36|TMM18_BOVIN Transmembrane protein 18 OS=Bos taurus GN=TMEM18 PE=2 SV=1
Length = 139
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 41/51 (80%)
Query: 19 ILLVYFSENLNEFAHNNWRSFARHEYFDEKGMFISIVFSIPLLLNCMILVL 69
+ LVY +E +NE A NWR F++H+YFD +GMFIS+VFS PLLLN +++V+
Sbjct: 60 VTLVYCAEYINEVAAMNWRLFSKHQYFDSRGMFISLVFSAPLLLNALVIVV 110
>sp|Q6DGF8|TMM18_RAT Transmembrane protein 18 OS=Rattus norvegicus GN=Tmem18 PE=2 SV=1
Length = 140
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 19 ILLVYFSENLNEFAHNNWRSFARHEYFDEKGMFISIVFSIPLLLNCMILVL---KRKYTC 75
++LVY +E +NE A NWR FA+++YFD +GMFIS+VFS PLL N M++V+ ++ T
Sbjct: 60 VVLVYCAEYINEVAAMNWRLFAKYQYFDSRGMFISLVFSAPLLFNAMVIVIMWVRKTLTV 119
Query: 76 KEPYPNLK 83
NL+
Sbjct: 120 MSDLKNLQ 127
>sp|Q5F410|TMM18_CHICK Transmembrane protein 18 OS=Gallus gallus GN=TMEM18 PE=2 SV=1
Length = 142
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 19 ILLVYFSENLNEFAHNNWRSFARHEYFDEKGMFISIVFSIPLLLNCMILVLKRKYTCKEP 78
+ LVY +E +NE A NWR F++++YFD +GMFIS+VFS PLL+N +I+V+ Y
Sbjct: 64 VCLVYCAEYINELAAMNWRLFSKYQYFDSRGMFISLVFSAPLLVNTIIIVVNWVYRTLNV 123
Query: 79 YPNLKT 84
LKT
Sbjct: 124 MTELKT 129
>sp|Q3TUD9|TMM18_MOUSE Transmembrane protein 18 OS=Mus musculus GN=Tmem18 PE=2 SV=1
Length = 140
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 41/51 (80%)
Query: 19 ILLVYFSENLNEFAHNNWRSFARHEYFDEKGMFISIVFSIPLLLNCMILVL 69
++LVY +E +NE A NWR F++++YFD +GMFIS+VFS PLL N M++V+
Sbjct: 60 VVLVYSAEYINEVAAVNWRLFSKYQYFDSRGMFISLVFSAPLLFNAMLIVI 110
>sp|Q28GF5|TMM18_XENTR Transmembrane protein 18 OS=Xenopus tropicalis GN=tmem18 PE=2 SV=1
Length = 136
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 17 LFILLVYFSENLNEFAHNNWRSFARHEYFDEKGMFISIVFSIPLLLNCMILVLKRKYTCK 76
L ++LV +E +NEFA +WRS+++ +YFD GMFIS+ FS PLL N +I+V+ Y
Sbjct: 53 LMVVLVSCAEYINEFAAMHWRSYSKQQYFDSSGMFISLAFSAPLLCNTIIIVVHWVYKTL 112
Query: 77 EPYPNLKT 84
LKT
Sbjct: 113 CVMTELKT 120
>sp|Q4V7N7|TMM18_XENLA Transmembrane protein 18 OS=Xenopus laevis GN=tmem18 PE=2 SV=1
Length = 136
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 17 LFILLVYFSENLNEFAHNNWRSFARHEYFDEKGMFISIVFSIPLLLNCMILVLKRKYTCK 76
L ++LV +E +NEFA +WR++++ +YFD GMFIS+ FS PLL N +I+V+ Y
Sbjct: 53 LMVVLVSCAEYINEFAAMHWRAYSKQQYFDSSGMFISLAFSAPLLCNTIIIVVHWVYKTL 112
Query: 77 EPYPNLKT 84
LKT
Sbjct: 113 CVMTELKT 120
>sp|P27679|TRI5_GIBPU Trichodiene synthase OS=Gibberella pulicaris GN=TRI5 PE=3 SV=1
Length = 383
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 24 FSENLNEFAHNNWRSFARHEYFDEKGMFISIVFSIPLLLNCMILV 68
F +N H S E FDE+G+F+ I +I + N M+ V
Sbjct: 180 FLRRMNGLGHCVGASLWPKEQFDERGLFLEITSAIAQMENWMVWV 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.147 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,411,848
Number of Sequences: 539616
Number of extensions: 1435410
Number of successful extensions: 3157
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3148
Number of HSP's gapped (non-prelim): 11
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)