Query psy14123
Match_columns 102
No_of_seqs 91 out of 93
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 20:09:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14123.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14123hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ech_C 25-MER fragment of prot 38.2 21 0.00072 18.9 2.0 20 24-43 4-24 (25)
2 4sgb_I Potato inhibitor, PCI-1 25.3 22 0.00074 21.9 0.7 14 39-52 10-23 (51)
3 3e8t_A Takeout 1, takeout-like 19.7 47 0.0016 23.5 1.7 17 23-39 169-185 (220)
4 1ce3_A Protein (API); protease 19.1 32 0.0011 21.2 0.6 13 40-52 37-49 (54)
5 2e12_A SM-like motif, hypothet 17.8 29 0.00098 23.9 0.2 9 41-49 51-59 (101)
6 3sui_B Transient receptor pote 16.5 19 0.00066 20.6 -0.8 12 29-40 16-27 (37)
7 3js8_A Cholesterol oxidase; ch 15.7 23 0.00078 29.9 -0.9 24 32-55 510-534 (540)
8 4dcz_A DNAJ-like protein Mg200 14.8 56 0.0019 22.0 1.0 10 44-53 69-78 (92)
9 2i0k_A Oxidoreductase; MIX alp 13.7 25 0.00084 29.0 -1.2 23 34-56 533-556 (561)
10 1xu2_R Tumor necrosis factor r 13.1 39 0.0013 20.3 -0.1 8 40-47 5-12 (47)
No 1
>3ech_C 25-MER fragment of protein ARMR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa}
Probab=38.21 E-value=21 Score=18.87 Aligned_cols=20 Identities=30% Similarity=0.672 Sum_probs=15.7
Q ss_pred hhhhhhHHHHhh-Hhhhcccc
Q psy14123 24 FSENLNEFAHNN-WRSFARHE 43 (102)
Q Consensus 24 ~aE~iNe~aa~n-W~~Fs~qn 43 (102)
|+|++-.-|.+| |..++.+=
T Consensus 4 ~te~lrr~arrnawdly~ehf 24 (25)
T 3ech_C 4 YTEQLRRAARRNAWDLYGEHF 24 (26)
T ss_dssp HHHHHHHHHHHTHHHHHHSCC
T ss_pred HHHHHHHHHHHhHHHHHHHhc
Confidence 579999999988 88776543
No 2
>4sgb_I Potato inhibitor, PCI-1; complex(serine proteinase-inhibitor); 2.10A {Streptomyces griseus} SCOP: g.69.1.1 PDB: 2jzm_A 1tih_A 1qh2_B
Probab=25.34 E-value=22 Score=21.85 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=11.7
Q ss_pred hccccccCCCCcee
Q psy14123 39 FARHEYFDEKGMFI 52 (102)
Q Consensus 39 Fs~qnYFDs~G~FI 52 (102)
..+=|||..+|.|+
T Consensus 10 ~KGC~Yf~~~Gtfi 23 (51)
T 4sgb_I 10 YKGCNYYSANGAFI 23 (51)
T ss_dssp BTTCEEECTTCCEE
T ss_pred cccceeecCCCCEE
Confidence 35679999999997
No 3
>3e8t_A Takeout 1, takeout-like protein 1; transport protein; HET: UQ8; 1.30A {Epiphyas postvittana} PDB: 3e8w_A*
Probab=19.74 E-value=47 Score=23.53 Aligned_cols=17 Identities=24% Similarity=0.649 Sum_probs=14.9
Q ss_pred hhhhhhhHHHHhhHhhh
Q psy14123 23 YFSENLNEFAHNNWRSF 39 (102)
Q Consensus 23 y~aE~iNe~aa~nW~~F 39 (102)
-.++.+|++..+||+.+
T Consensus 169 ~L~~~~n~~iN~nw~~i 185 (220)
T 3e8t_A 169 ELSDTMLTFLNQNWKQV 185 (220)
T ss_dssp HHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHCHHHH
Confidence 45889999999999985
No 4
>1ce3_A Protein (API); protease inhibitor, circular permutation; NMR {Nicotiana alata} SCOP: g.69.1.1
Probab=19.08 E-value=32 Score=21.18 Aligned_cols=13 Identities=31% Similarity=0.848 Sum_probs=11.1
Q ss_pred ccccccCCCCcee
Q psy14123 40 ARHEYFDEKGMFI 52 (102)
Q Consensus 40 s~qnYFDs~G~FI 52 (102)
.+=+||.++|.||
T Consensus 37 KGC~y~s~dGtfi 49 (54)
T 1ce3_A 37 KGCKYFSDDGTFV 49 (54)
T ss_dssp TTCEEECSSSCEE
T ss_pred ccceEEcCCCcEE
Confidence 4668999999997
No 5
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=17.84 E-value=29 Score=23.85 Aligned_cols=9 Identities=33% Similarity=0.456 Sum_probs=7.3
Q ss_pred cccccCCCC
Q psy14123 41 RHEYFDEKG 49 (102)
Q Consensus 41 ~qnYFDs~G 49 (102)
-|+|||++|
T Consensus 51 iQ~y~d~~~ 59 (101)
T 2e12_A 51 IQTYRDEQE 59 (101)
T ss_dssp EEEEECTTC
T ss_pred HHHhhCccc
Confidence 478999887
No 6
>3sui_B Transient receptor potential cation channel subfa member 1; calmodulin, calcium-calmodulin, TRPV1, TRPV1 C-terminus, CAL complex, thermosensor; 1.95A {Rattus norvegicus}
Probab=16.55 E-value=19 Score=20.64 Aligned_cols=12 Identities=33% Similarity=0.886 Sum_probs=9.2
Q ss_pred hHHHHhhHhhhc
Q psy14123 29 NEFAHNNWRSFA 40 (102)
Q Consensus 29 Ne~aa~nW~~Fs 40 (102)
.+..++||+.|+
T Consensus 16 grvsgrnwknf~ 27 (37)
T 3sui_B 16 GRVSGRNWKNFA 27 (37)
T ss_pred cccccccccccc
Confidence 456789999886
No 7
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP}
Probab=15.71 E-value=23 Score=29.87 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=19.6
Q ss_pred HHhhHhhh-ccccccCCCCceehhh
Q psy14123 32 AHNNWRSF-ARHEYFDEKGMFISIV 55 (102)
Q Consensus 32 aa~nW~~F-s~qnYFDs~G~FISvv 55 (102)
++.||..| +..+=+||+|+|-+-.
T Consensus 510 ~~~~~~~~~~~~~~~DP~~~F~n~~ 534 (540)
T 3js8_A 510 AAANWDAAKAALAAYDPYRLFSSPL 534 (540)
T ss_dssp GGGSHHHHHHHHHHHCTTCCSCCHH
T ss_pred CCCCHHHHHHHHHhcCCCcccCCHH
Confidence 56889998 5778899999997643
No 8
>4dcz_A DNAJ-like protein Mg200; dimer, intra-domain symmetry AXIS, unknown function; 2.90A {Mycoplasma genitalium}
Probab=14.76 E-value=56 Score=22.02 Aligned_cols=10 Identities=50% Similarity=1.105 Sum_probs=5.2
Q ss_pred ccCCCCceeh
Q psy14123 44 YFDEKGMFIS 53 (102)
Q Consensus 44 YFDs~G~FIS 53 (102)
|||++|=|++
T Consensus 69 YFDE~g~WV~ 78 (92)
T 4dcz_A 69 YFDEQGKWVW 78 (92)
T ss_dssp EECTTSBEEE
T ss_pred EecCCCCEee
Confidence 5555555543
No 9
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A*
Probab=13.67 E-value=25 Score=29.03 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=17.3
Q ss_pred hhHhhh-ccccccCCCCceehhhh
Q psy14123 34 NNWRSF-ARHEYFDEKGMFISIVF 56 (102)
Q Consensus 34 ~nW~~F-s~qnYFDs~G~FISvv~ 56 (102)
.+|..| +-.+-+||+|+|.|-.+
T Consensus 533 p~~~~f~~~r~~~DP~g~F~n~~~ 556 (561)
T 2i0k_A 533 ENWDTARARYNQIDPHRVFTNGFM 556 (561)
T ss_dssp SSHHHHHHHHHHHCTTCCSCCHHH
T ss_pred CCHHHHHHHHHhcCCCCccCCHHH
Confidence 678888 34555899999988543
No 10
>1xu2_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 2.35A {Homo sapiens} SCOP: g.24.1.2 PDB: 2kn1_A* 1oqd_K
Probab=13.13 E-value=39 Score=20.34 Aligned_cols=8 Identities=50% Similarity=1.128 Sum_probs=6.1
Q ss_pred ccccccCC
Q psy14123 40 ARHEYFDE 47 (102)
Q Consensus 40 s~qnYFDs 47 (102)
..++|||+
T Consensus 5 ~~eqYwD~ 12 (47)
T 1xu2_R 5 SQNEYFDS 12 (47)
T ss_dssp CTTEEEET
T ss_pred cHHHHHHH
Confidence 35689997
Done!