RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14123
         (102 letters)



>gnl|CDD|224190 COG1271, CydA, Cytochrome bd-type quinol oxidase, subunit 1 [Energy
           production and conversion].
          Length = 457

 Score = 28.4 bits (64), Expect = 0.64
 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 15  PYLFILLVYFS-----ENLNEFAHNNWRSFARHEYFDEKGMFISIVFSIPLLLNCMILVL 69
           P L  LL   S     + L +    +      H ++  + M       I L L  + L L
Sbjct: 292 PGLLSLLATHSLDGPVKGLKDLPAEDEPPPVAHVFWSFRIMVGLGFLMILLALLALWLTL 351

Query: 70  KRKYTCKEPY 79
           + +    +  
Sbjct: 352 RGRIDQSKWL 361


>gnl|CDD|213612 TIGR01383, not_thiJ, DJ-1 family protein.  This model represents
           the DJ-1 clade of the so-called ThiJ/PfpI family of
           proteins. PfpI, represented by a distinct model, is a
           putative intracellular cysteine protease. DJ-1 is
           described as an oncogene that acts cooperatively with
           H-Ras. Many members of the DJ-1 clade are annotated
           (apparently incorrectly) as ThiJ, a protein of thiamine
           biosynthesis. However, published reports of ThiJ
           activity and identification of a ThiJ/ThiD bifunctional
           protein describe an unrelated locus mapping near ThiM,
           rather than the DJ-1 homolog of E. coli. The ThiJ
           designation for this family may be spurious; the cited
           paper PMID:8885414 refers to a locus near thiD and thiM
           in E. coli, unlike the gene represented here. Current
           public annotation reflects ThiJ/ThiD bifunctional
           activity, apparently a property of ThiD and not of this
           locus [Unknown function, General].
          Length = 179

 Score = 26.5 bits (59), Expect = 2.0
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 45  FDEKGMFISIVFSIPLLLNCMILVLKRKYTCKEPYPNLK 83
            + KG  ++ + + P +L    ++L +K TC   YP  K
Sbjct: 92  QESKGKLVAAICAAPAVLLAHGVLLGKKATC---YPGFK 127


>gnl|CDD|225729 COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility
           and secretion / Intracellular trafficking and
           secretion].
          Length = 835

 Score = 26.9 bits (60), Expect = 2.4
 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)

Query: 35  NWRSFARHEYFDEKGMFISIVFSIPL 60
           +  S +R EY  +    + +  SIPL
Sbjct: 546 SL-SRSRSEYDGDSDRQVYLNISIPL 570


>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase;
           Validated.
          Length = 502

 Score = 26.2 bits (58), Expect = 3.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 40  ARHEYFDEKGMFISI 54
           AR EYF+E G++I I
Sbjct: 341 ARDEYFEETGVYIPI 355


>gnl|CDD|237239 PRK12869, ubiA, protoheme IX farnesyltransferase; Reviewed.
          Length = 279

 Score = 25.1 bits (55), Expect = 9.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 3   YLLVFSIVLKPRPYLFILLVYFSEN 27
           Y +V++I LKPR +L I++  F+ N
Sbjct: 119 YAVVYTIWLKPRTWLNIVIGGFAGN 143


>gnl|CDD|149028 pfam07737, ATLF, Anthrax toxin lethal factor, N- and C-terminal
           domain.  The C-terminal domain is the catalytically
           active domain whereas the N-terminal domain is likely to
           be inactive.
          Length = 226

 Score = 24.8 bits (54), Expect = 9.4
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 5   LVFSIVLKPRPYLFILLVYFSENLNEFAHNNWRSFA 40
           L+F  + K       +  +   NL EF H   ++FA
Sbjct: 161 LLFIDIFKEHGSNLDV-SFIRTNLAEFQHVFAKAFA 195


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.331    0.147    0.466 

Gapped
Lambda     K      H
   0.267   0.0778    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,389,678
Number of extensions: 461820
Number of successful extensions: 511
Number of sequences better than 10.0: 1
Number of HSP's gapped: 511
Number of HSP's successfully gapped: 28
Length of query: 102
Length of database: 10,937,602
Length adjustment: 68
Effective length of query: 34
Effective length of database: 7,921,530
Effective search space: 269332020
Effective search space used: 269332020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.1 bits)