RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14123
         (102 letters)



>1md8_A C1R complement serine protease; innate immunity, activation,
          substrate specificity, hydrolase; 2.80A {Homo sapiens}
          SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
          Length = 329

 Score = 25.1 bits (55), Expect = 4.8
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 72 KYTCKEPYPNLKTPLCLTPLLKNGFT 97
          +Y C EPY  ++T        +  +T
Sbjct: 29 QYYCHEPYYKMQTRAGSRESEQGVYT 54


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.0 bits (54), Expect = 6.2
 Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 18/88 (20%)

Query: 14  RPYLFILLVYFSENLNEFAHNNWRSFARHEY-FD------------EKGMFISIVFSIPL 60
              +  L+ + +E L+E       +        +            +K   +SI  S PL
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240

Query: 61  L----LNCMILVLKR-KYTCKEPYPNLK 83
           +    L   ++  K   +T  E    LK
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLK 268


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.147    0.466 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,549,264
Number of extensions: 75699
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 12
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.6 bits)