BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14126
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5M7E1|CLVS1_XENLA Clavesin-1 OS=Xenopus laevis GN=clvs1 PE=2 SV=1
Length = 332
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 15/79 (18%)
Query: 11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
D+ PA +GG +++ + WY P L + ++ HGN ++SLH+ IHPD
Sbjct: 189 DSFPARFGG----VHFVNQPWYIHALYTIIKPFLKDKTRKRIFLHGNNLNSLHQLIHPDC 244
Query: 62 LPADYGGNKPKINYSSAQW 80
LP+++GG P Y W
Sbjct: 245 LPSEFGGTLPP--YDMGTW 261
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 1 MSSLHKYIHPDTLPADYGGNKPKINYSSAQWYPVL--DEIEDSIMYFHGNKMSSLHKYIH 58
++SLH+ IHPD LP+++GG P Y W L + D Y H S + IH
Sbjct: 233 LNSLHQLIHPDCLPSEFGGTLPP--YDMGTWARTLLGPDYNDENEYTH-----SSYNVIH 285
Query: 59 PDTLPADY-GGNKPK 72
+PA G + PK
Sbjct: 286 VKHVPAIVEGEDSPK 300
>sp|Q95KF7|CLVS2_MACFA Clavesin-2 OS=Macaca fascicularis GN=CLVS2 PE=2 SV=2
Length = 327
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 15/79 (18%)
Query: 11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
D+ PA +GG I++ + WY P L E ++ HGN ++SLH+ IHP+
Sbjct: 189 DSFPARFGG----IHFVNQPWYIHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEI 244
Query: 62 LPADYGGNKPKINYSSAQW 80
LP+++GG P Y W
Sbjct: 245 LPSEFGGMLPP--YDMGTW 261
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 1 MSSLHKYIHPDTLPADYGGNKPKINYSSAQW 31
++SLH+ IHP+ LP+++GG P Y W
Sbjct: 233 LNSLHQLIHPEILPSEFGGMLPP--YDMGTW 261
>sp|Q5SYC1|CLVS2_HUMAN Clavesin-2 OS=Homo sapiens GN=CLVS2 PE=2 SV=1
Length = 327
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 15/79 (18%)
Query: 11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
D+ PA +GG I++ + WY P L E ++ HGN ++SLH+ IHP+
Sbjct: 189 DSFPARFGG----IHFVNQPWYIHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEI 244
Query: 62 LPADYGGNKPKINYSSAQW 80
LP+++GG P Y W
Sbjct: 245 LPSEFGGMLPP--YDMGTW 261
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 1 MSSLHKYIHPDTLPADYGGNKPKINYSSAQW 31
++SLH+ IHP+ LP+++GG P Y W
Sbjct: 233 LNSLHQLIHPEILPSEFGGMLPP--YDMGTW 261
>sp|Q8BG92|CLVS2_MOUSE Clavesin-2 OS=Mus musculus GN=Clvs2 PE=2 SV=1
Length = 327
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 15/79 (18%)
Query: 11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
D+ PA +GG I++ + WY P L E ++ HGN ++SLH+ IHP+
Sbjct: 189 DSFPARFGG----IHFVNQPWYIHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEI 244
Query: 62 LPADYGGNKPKINYSSAQW 80
LP+++GG P Y W
Sbjct: 245 LPSEFGGMLPP--YDMGTW 261
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 1 MSSLHKYIHPDTLPADYGGNKPKINYSSAQW 31
++SLH+ IHP+ LP+++GG P Y W
Sbjct: 233 LNSLHQLIHPEILPSEFGGMLPP--YDMGTW 261
>sp|A6JUQ6|CLVS2_RAT Clavesin-2 OS=Rattus norvegicus GN=Clvs2 PE=1 SV=1
Length = 327
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 13/70 (18%)
Query: 11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
D+ PA +GG I++ + WY P L E ++ HGN ++SLH+ IHP+
Sbjct: 189 DSFPARFGG----IHFVNQPWYIHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEI 244
Query: 62 LPADYGGNKP 71
LP+++GG P
Sbjct: 245 LPSEFGGMLP 254
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 1 MSSLHKYIHPDTLPADYGGNKPKINYSSAQWYPVL 35
++SLH+ IHP+ LP+++GG P Y W L
Sbjct: 233 LNSLHQLIHPEILPSEFGGMLPP--YDMGTWARTL 265
>sp|Q5RCA6|CLVS1_PONAB Clavesin-1 OS=Pongo abelii GN=CLVS1 PE=2 SV=1
Length = 354
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 13/70 (18%)
Query: 11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
D+ PA +GG +++ + WY P L + ++ HGN ++SLH+ IHP+
Sbjct: 211 DSFPARFGG----VHFVNQPWYIHALYTLIKPFLKDKTRKRIFLHGNNLNSLHQLIHPEF 266
Query: 62 LPADYGGNKP 71
LP+++GG P
Sbjct: 267 LPSEFGGTLP 276
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 1 MSSLHKYIHPDTLPADYGGNKPKINYSSAQWYPVL 35
++SLH+ IHP+ LP+++GG P Y W L
Sbjct: 255 LNSLHQLIHPEFLPSEFGGTLPP--YDMGTWARTL 287
>sp|Q8IUQ0|CLVS1_HUMAN Clavesin-1 OS=Homo sapiens GN=CLVS1 PE=1 SV=1
Length = 354
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 13/70 (18%)
Query: 11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
D+ PA +GG +++ + WY P L + ++ HGN ++SLH+ IHP+
Sbjct: 211 DSFPARFGG----VHFVNQPWYIHALYTLIKPFLKDKTRKRIFLHGNNLNSLHQLIHPEF 266
Query: 62 LPADYGGNKP 71
LP+++GG P
Sbjct: 267 LPSEFGGTLP 276
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 1 MSSLHKYIHPDTLPADYGGNKPKINYSSAQWYPVL 35
++SLH+ IHP+ LP+++GG P Y W L
Sbjct: 255 LNSLHQLIHPEFLPSEFGGTLPP--YDMGTWARTL 287
>sp|A6JFQ6|CLVS1_RAT Clavesin-1 OS=Rattus norvegicus GN=Clvs1 PE=1 SV=1
Length = 354
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 13/70 (18%)
Query: 11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
D+ PA +GG +++ + WY P L + ++ HGN ++SLH+ IHP+
Sbjct: 211 DSFPARFGG----VHFVNQPWYIHALYTLIKPFLKDKTRKRIFLHGNNLNSLHQLIHPEF 266
Query: 62 LPADYGGNKP 71
LP+++GG P
Sbjct: 267 LPSEFGGTLP 276
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 1 MSSLHKYIHPDTLPADYGGNKPKINYSSAQWYPVL 35
++SLH+ IHP+ LP+++GG P Y W L
Sbjct: 255 LNSLHQLIHPEFLPSEFGGTLPP--YDMGTWARTL 287
>sp|Q9D4C9|CLVS1_MOUSE Clavesin-1 OS=Mus musculus GN=Clvs1 PE=2 SV=1
Length = 354
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 13/70 (18%)
Query: 11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
D+ PA +GG +++ + WY P L + ++ HGN ++SLH+ IHP+
Sbjct: 211 DSFPARFGG----VHFVNQPWYIHALYTLIKPFLKDKTRKRIFLHGNNLNSLHQLIHPEF 266
Query: 62 LPADYGGNKP 71
LP+++GG P
Sbjct: 267 LPSEFGGTLP 276
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 1 MSSLHKYIHPDTLPADYGGNKPKINYSSAQWYPVL 35
++SLH+ IHP+ LP+++GG P Y W L
Sbjct: 255 LNSLHQLIHPEFLPSEFGGTLPP--YDMGTWARTL 287
>sp|Q5SPP0|CLVS2_DANRE Clavesin-2 OS=Danio rerio GN=clvs2 PE=2 SV=1
Length = 329
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 15/79 (18%)
Query: 11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
D+ PA +GG I++ + WY P L + ++ HGN ++SLH+ I P+
Sbjct: 189 DSFPARFGG----IHFVNQPWYIHALYTVIRPFLKDKTRKRIFMHGNNLNSLHQLILPEI 244
Query: 62 LPADYGGNKPKINYSSAQW 80
LP++ GG P Y W
Sbjct: 245 LPSELGGMLPP--YDMGTW 261
>sp|P10123|RLBP1_BOVIN Retinaldehyde-binding protein 1 OS=Bos taurus GN=RLBP1 PE=1 SV=4
Length = 317
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Query: 11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
D+ PA + I++ WY P L ++ HG +SS ++ D
Sbjct: 229 DSFPARFKA----IHFIYQPWYFTTTYNVVKPFLKSKLLQRVFVHGEDLSSFYQEFDEDI 284
Query: 62 LPADYGGNKPK 72
LP+D+GG PK
Sbjct: 285 LPSDFGGTLPK 295
>sp|P12271|RLBP1_HUMAN Retinaldehyde-binding protein 1 OS=Homo sapiens GN=RLBP1 PE=1 SV=2
Length = 317
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
D+ PA + I++ WY P L ++ HG+ +S ++ I +
Sbjct: 229 DSFPARFKA----IHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENI 284
Query: 62 LPADYGGNKPK 72
LP+D+GG PK
Sbjct: 285 LPSDFGGTLPK 295
>sp|Q9Z275|RLBP1_MOUSE Retinaldehyde-binding protein 1 OS=Mus musculus GN=Rlbp1 PE=2 SV=3
Length = 317
Score = 32.3 bits (72), Expect = 0.84, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 11 DTLPADYGGNKPKINYSSAQWY---------PVLDEIEDSIMYFHGNKMSSLHKYIHPDT 61
D+ PA + I++ WY P L ++ HG+ + + I +
Sbjct: 229 DSFPARFKA----IHFIHQPWYFTTTYNVVKPFLKNKLLQRVFVHGDDLDGFFQEIDENI 284
Query: 62 LPADYGGNKPK 72
LPAD+GG PK
Sbjct: 285 LPADFGGTLPK 295
>sp|Q9D3D0|TTPAL_MOUSE Alpha-tocopherol transfer protein-like OS=Mus musculus GN=Ttpal
PE=2 SV=3
Length = 343
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 33 PVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQW 80
P L E + + HG+ ++SLH + + LP +YGG +++ +A W
Sbjct: 242 PFLKEKIANRFFLHGSDLNSLHTNLPRNILPKEYGGTAGELD--TASW 287
>sp|P41034|TTPA_RAT Alpha-tocopherol transfer protein OS=Rattus norvegicus GN=Ttpa PE=1
SV=1
Length = 278
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 33 PVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQW 80
P L E ++ HGN S PD LP +YGGN+ + +W
Sbjct: 212 PFLTEKIKGRIHLHGNNYKSSLLQHFPDILPLEYGGNESSMEDICQEW 259
>sp|Q5RFR0|TTPAL_PONAB Alpha-tocopherol transfer protein-like OS=Pongo abelii GN=TTPAL
PE=2 SV=1
Length = 342
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 33 PVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQW 80
P L E + + HG+ ++SLH + LP +YGG +++ +A W
Sbjct: 241 PFLKEKIANRFFLHGSDLNSLHTNLPRSILPKEYGGTAGELD--TATW 286
>sp|Q9BTX7|TTPAL_HUMAN Alpha-tocopherol transfer protein-like OS=Homo sapiens GN=TTPAL
PE=2 SV=2
Length = 342
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 33 PVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQW 80
P L E + + HG+ ++SLH + LP +YGG +++ +A W
Sbjct: 241 PFLKEKIANRFFLHGSDLNSLHTNLPRSILPKEYGGTAGELD--TATW 286
>sp|Q99MS0|S14L2_RAT SEC14-like protein 2 OS=Rattus norvegicus GN=Sec14l2 PE=1 SV=1
Length = 403
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 20/76 (26%)
Query: 10 PDTLPADYGGNKPKINYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGN 69
P P Y KP ++ ++ IM N L K+I PD LP +YGG
Sbjct: 195 PKLFPVAYNLIKPFLS----------EDTRKKIMVLGANWKEVLLKHISPDQLPVEYGGT 244
Query: 70 ----------KPKINY 75
K KINY
Sbjct: 245 MTDPDGNPKCKSKINY 260
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 14/60 (23%)
Query: 4 LHKYIHPDTLPADYGGN----------KPKINYSS--AQWYPVLDEIEDSIMYFHGNKMS 51
L K+I PD LP +YGG K KINY + Y V D+++ Y H ++S
Sbjct: 228 LLKHISPDQLPVEYGGTMTDPDGNPKCKSKINYGGDIPKQYYVRDQVKQQ--YEHSVQIS 285
>sp|Q9SCU1|PATL6_ARATH Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1
Length = 409
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 42 IMYFHGNKMSSLHKYIHPDTLPADYGG 68
+M GN +L+K+I P+ +P YGG
Sbjct: 262 VMSKEGNAAETLYKFIRPEDIPVQYGG 288
>sp|Q8R0F9|S14L4_MOUSE SEC14-like protein 4 OS=Mus musculus GN=Sec14l4 PE=2 SV=1
Length = 403
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 36 DEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGG 68
+E + I+ GN L K++ PD LP ++GG
Sbjct: 211 EETQKKIVILGGNWKQELVKFVSPDQLPVEFGG 243
>sp|Q99J08|S14L2_MOUSE SEC14-like protein 2 OS=Mus musculus GN=Sec14l2 PE=2 SV=1
Length = 403
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 20/76 (26%)
Query: 10 PDTLPADYGGNKPKINYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGN 69
P P Y KP ++ ++ IM N L K+I PD LP +YGG
Sbjct: 195 PKLFPVAYNLIKPFLS----------EDTRRKIMVLGANWKEVLLKHISPDQLPVEYGGT 244
Query: 70 ----------KPKINY 75
K KINY
Sbjct: 245 MTDPDGNPKCKSKINY 260
>sp|P58875|S14L2_BOVIN SEC14-like protein 2 OS=Bos taurus GN=SEC14L2 PE=1 SV=2
Length = 403
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 20/76 (26%)
Query: 10 PDTLPADYGGNKPKINYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGN 69
P P Y KP ++ ++ I N L KYI PD LP +YGG
Sbjct: 195 PKLFPVAYNLVKPFLS----------EDTRKKIQVLGANWKEVLLKYISPDQLPVEYGGT 244
Query: 70 ----------KPKINY 75
K KINY
Sbjct: 245 MTDPDGNPKCKSKINY 260
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 14/60 (23%)
Query: 4 LHKYIHPDTLPADYGGN----------KPKINYSS--AQWYPVLDEIEDSIMYFHGNKMS 51
L KYI PD LP +YGG K KINY + Y V D+++ Y H ++S
Sbjct: 228 LLKYISPDQLPVEYGGTMTDPDGNPKCKSKINYGGDIPKKYYVRDQVKQQ--YEHSVQIS 285
>sp|Q6GZT8|RIR1_FRG3G Putative ribonucleoside-diphosphate reductase large subunit
OS=Frog virus 3 (isolate Goorha) GN=FV3-038R PE=3 SV=1
Length = 565
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 27 SSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKI-----NYSSAQWY 81
+SA +P+ + D + F+G+ + SL+ TL Y G KP++ +Y+ W+
Sbjct: 2 TSAVSFPITSQASDMLSKFYGSDLGSLY-----GTLAEKYSGGKPELAEKLRDYACKGWF 56
>sp|O76054|S14L2_HUMAN SEC14-like protein 2 OS=Homo sapiens GN=SEC14L2 PE=1 SV=1
Length = 403
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 20/76 (26%)
Query: 10 PDTLPADYGGNKPKINYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGN 69
P P Y KP ++ ++ IM N L K+I PD +P +YGG
Sbjct: 195 PKLFPVAYNLIKPFLS----------EDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGT 244
Query: 70 ----------KPKINY 75
K KINY
Sbjct: 245 MTDPDGNPKCKSKINY 260
>sp|Q03EY9|SYI_PEDPA Isoleucine--tRNA ligase OS=Pediococcus pentosaceus (strain ATCC
25745 / 183-1w) GN=ileS PE=3 SV=1
Length = 933
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 7 YIHPDTLPADYGGNKPKINYSSAQWYPVLDEIEDSIM 43
Y+H + P D+ KP I ++ QW+ +D+I D I+
Sbjct: 392 YVH--SYPFDWRTKKPIIFRATPQWFASVDKIRDQIL 426
>sp|Q8BWP5|TTPA_MOUSE Alpha-tocopherol transfer protein OS=Mus musculus GN=Ttpa PE=2 SV=1
Length = 278
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 33 PVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQW 80
P L E ++ HGN S PD LP +YGG + + +W
Sbjct: 212 PFLTEKIKDRIHLHGNNYKSSMLQHFPDILPREYGGKEFSMEDICQEW 259
>sp|Q03QI3|SYI_LACBA Isoleucine--tRNA ligase OS=Lactobacillus brevis (strain ATCC 367 /
JCM 1170) GN=ileS PE=3 SV=1
Length = 937
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 2 SSLHKYI-HPDTLPADYGGNKPKINYSSAQWYPVLDEIEDSIM 43
++L KY+ + + P D+ KP I ++ QW+ +D+I D I+
Sbjct: 384 NALLKYMPYEHSYPFDWRTKKPVIFRATPQWFASVDKIRDEIL 426
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.134 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,737,050
Number of Sequences: 539616
Number of extensions: 1405749
Number of successful extensions: 2001
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1950
Number of HSP's gapped (non-prelim): 60
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)