Query psy14126
Match_columns 81
No_of_seqs 108 out of 1059
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 20:13:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hx3_A Retinaldehyde-binding p 99.6 5.6E-18 1.9E-22 116.8 -2.2 72 7-80 224-300 (316)
2 1r5l_A Alpha-TTP, protein (alp 99.6 6E-18 2E-22 112.7 -3.0 72 8-80 166-243 (262)
3 1aua_A Phosphatidylinositol tr 99.5 5.9E-16 2E-20 105.1 -0.6 68 7-74 196-269 (296)
4 3q8g_A CRAL-TRIO domain-contai 99.5 4.8E-16 1.6E-20 107.5 -2.5 69 7-75 211-285 (320)
5 1olm_A SEC14-like protein 2; l 99.5 1.7E-15 5.7E-20 106.8 -1.4 69 7-75 176-250 (403)
6 1r5l_A Alpha-TTP, protein (alp 96.1 0.0041 1.4E-07 40.7 3.1 36 2-38 215-250 (262)
7 3hx3_A Retinaldehyde-binding p 94.3 0.031 1.1E-06 38.0 3.0 25 1-25 272-296 (316)
8 1aua_A Phosphatidylinositol tr 92.0 0.068 2.3E-06 35.6 1.9 22 2-23 246-267 (296)
9 3q8g_A CRAL-TRIO domain-contai 90.5 0.09 3.1E-06 35.9 1.3 22 2-23 261-282 (320)
10 1olm_A SEC14-like protein 2; l 89.3 0.12 4.3E-06 35.9 1.3 22 2-23 226-247 (403)
11 3pg7_A Neurofibromin; SEC lipi 60.2 2.2 7.4E-05 28.3 0.3 51 11-62 84-144 (256)
12 4er8_A Tnparep for protein; pr 49.2 5.1 0.00017 24.6 0.7 24 50-73 134-157 (165)
13 2k5k_A Uncharacterized protein 23.6 95 0.0032 16.7 3.4 23 58-80 31-53 (70)
14 1jxc_A Putative trypsin inhibi 21.1 35 0.0012 18.1 0.9 14 58-72 8-21 (68)
No 1
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=99.64 E-value=5.6e-18 Score=116.77 Aligned_cols=72 Identities=24% Similarity=0.443 Sum_probs=65.0
Q ss_pred hcCCCcccccccC----CCCC-ccchHHHHHHHHHhccCceEEEcCCChHHHhhhCCCCCCCCcCCCCCCCCCCCCCCC
Q psy14126 7 YIHPDTLPADYGG----NKPK-INYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQW 80 (81)
Q Consensus 7 ~i~~~~lP~r~gg----n~p~-~~~~~~~~k~fL~~k~~~ri~~~~~~~~~l~~~i~~~~LP~e~GG~~~~~~~~~~~w 80 (81)
.+.++++|.|+++ |+|+ +..+++++++||++++++||+|||+++++|+++||+++||++|||+++ .++++.|
T Consensus 224 ~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~~~~L~~~I~~~~LP~eyGG~~~--~~d~~~~ 300 (316)
T 3hx3_A 224 DMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGGTLP--KYDGKAV 300 (316)
T ss_dssp HHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETCCHHHHHHSCGGGSBGGGTSSBC--CCCHHHH
T ss_pred HHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCCHHHHHhhCCHhhCcHhhCCCCC--CcChhHH
Confidence 3568999999999 9999 488999999999999999999998789999999999999999999998 4556666
No 2
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=99.63 E-value=6e-18 Score=112.69 Aligned_cols=72 Identities=28% Similarity=0.495 Sum_probs=64.4
Q ss_pred cCCCcccccccC----CCCC-ccchHHHHHHHHHhccCceEEEcCCCh-HHHhhhCCCCCCCCcCCCCCCCCCCCCCCC
Q psy14126 8 IHPDTLPADYGG----NKPK-INYSSAQWYPVLDEIEDSIMYFHGNKM-SSLHKYIHPDTLPADYGGNKPKINYSSAQW 80 (81)
Q Consensus 8 i~~~~lP~r~gg----n~p~-~~~~~~~~k~fL~~k~~~ri~~~~~~~-~~l~~~i~~~~LP~e~GG~~~~~~~~~~~w 80 (81)
+.++++|.|+++ |+|+ +..+++++++||++++++||+|||+++ ++|.++|| ++||++|||+.++.++.+..|
T Consensus 166 ~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~~yGG~~~~~~~~~~~w 243 (262)
T 1r5l_A 166 VLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLEYGGEEFSMEDICQEW 243 (262)
T ss_dssp HHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCGGGTCSSCCHHHHHHHH
T ss_pred HHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcHhhCCCCCCHHHHHHHH
Confidence 568999999999 9999 588899999999999999999998665 78999999 999999999998776666665
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=99.53 E-value=5.9e-16 Score=105.12 Aligned_cols=68 Identities=26% Similarity=0.473 Sum_probs=61.4
Q ss_pred hcCCCcccccccC----CCCC-ccchHHHHHHHHHhccCceEEEcCCCh-HHHhhhCCCCCCCCcCCCCCCCCC
Q psy14126 7 YIHPDTLPADYGG----NKPK-INYSSAQWYPVLDEIEDSIMYFHGNKM-SSLHKYIHPDTLPADYGGNKPKIN 74 (81)
Q Consensus 7 ~i~~~~lP~r~gg----n~p~-~~~~~~~~k~fL~~k~~~ri~~~~~~~-~~l~~~i~~~~LP~e~GG~~~~~~ 74 (81)
.+.|+++|.|++. |+|+ +..+++++++||++++++||+||++++ ++|+++||+++||++|||+....+
T Consensus 196 ~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~~~ 269 (296)
T 1aua_A 196 YISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGGKSEVDE 269 (296)
T ss_dssp HHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBGGGTSCBCCCG
T ss_pred HHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCcHHhCCCCCCCC
Confidence 4568999999999 9999 588999999999999999999998665 579999999999999999997665
No 4
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=99.50 E-value=4.8e-16 Score=107.51 Aligned_cols=69 Identities=26% Similarity=0.364 Sum_probs=62.1
Q ss_pred hcCCCcccccccC----CCCC-ccchHHHHHHHHHhccCceEEEcCCCh-HHHhhhCCCCCCCCcCCCCCCCCCC
Q psy14126 7 YIHPDTLPADYGG----NKPK-INYSSAQWYPVLDEIEDSIMYFHGNKM-SSLHKYIHPDTLPADYGGNKPKINY 75 (81)
Q Consensus 7 ~i~~~~lP~r~gg----n~p~-~~~~~~~~k~fL~~k~~~ri~~~~~~~-~~l~~~i~~~~LP~e~GG~~~~~~~ 75 (81)
.+.|+++|.|++. |+|+ +..+++++++||++++++||+||++++ ++|.++||+++||++|||++...+.
T Consensus 211 ~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~~~~ 285 (320)
T 3q8g_A 211 DISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYGGTSVLHNP 285 (320)
T ss_dssp HHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCGGGSBGGGTSCBCCSST
T ss_pred HHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCChhhCChhhCCCCCCCCC
Confidence 3568999999999 9999 488999999999999999999998665 6899999999999999999988653
No 5
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=99.48 E-value=1.7e-15 Score=106.77 Aligned_cols=69 Identities=23% Similarity=0.372 Sum_probs=61.5
Q ss_pred hcCCCcccccccC----CCCC-ccchHHHHHHHHHhccCceEEEcCCCh-HHHhhhCCCCCCCCcCCCCCCCCCC
Q psy14126 7 YIHPDTLPADYGG----NKPK-INYSSAQWYPVLDEIEDSIMYFHGNKM-SSLHKYIHPDTLPADYGGNKPKINY 75 (81)
Q Consensus 7 ~i~~~~lP~r~gg----n~p~-~~~~~~~~k~fL~~k~~~ri~~~~~~~-~~l~~~i~~~~LP~e~GG~~~~~~~ 75 (81)
.+.|+++|.|++. |+|+ +..+++++++||++++++||+||++++ ++|.++||+++||++|||++...+.
T Consensus 176 ~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~LP~~yGG~~~~~~~ 250 (403)
T 1olm_A 176 CMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTMTDPDG 250 (403)
T ss_dssp HHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSBGGGTSSBCCTTC
T ss_pred HHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhCchhhCCCcCCCCC
Confidence 3568999999999 9999 488999999999999999999998666 4799999999999999999986543
No 6
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=96.10 E-value=0.0041 Score=40.66 Aligned_cols=36 Identities=25% Similarity=0.477 Sum_probs=29.1
Q ss_pred hhhhhhcCCCcccccccCCCCCccchHHHHHHHHHhc
Q psy14126 2 SSLHKYIHPDTLPADYGGNKPKINYSSAQWYPVLDEI 38 (81)
Q Consensus 2 ~~l~~~i~~~~lP~r~ggn~p~~~~~~~~~k~fL~~k 38 (81)
++|+++|+ +.||.+|||+.+..+.....|+..+.++
T Consensus 215 ~~L~~~i~-~~LP~~yGG~~~~~~~~~~~w~~~l~~~ 250 (262)
T 1r5l_A 215 QSLLQHFP-DILPLEYGGEEFSMEDICQEWTNFIMKS 250 (262)
T ss_dssp HHHHHHST-TTSCGGGTCSSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhh-hhCcHhhCCCCCCHHHHHHHHHHHHHHH
Confidence 57899999 9999999999988654566777776654
No 7
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=94.27 E-value=0.031 Score=38.00 Aligned_cols=25 Identities=36% Similarity=0.745 Sum_probs=21.9
Q ss_pred ChhhhhhcCCCcccccccCCCCCcc
Q psy14126 1 MSSLHKYIHPDTLPADYGGNKPKIN 25 (81)
Q Consensus 1 ~~~l~~~i~~~~lP~r~ggn~p~~~ 25 (81)
+++|+++|+++.||.+|||+++..+
T Consensus 272 ~~~L~~~I~~~~LP~eyGG~~~~~d 296 (316)
T 3hx3_A 272 LSGFYQEIDENILPSDFGGTLPKYD 296 (316)
T ss_dssp CHHHHHHSCGGGSBGGGTSSBCCCC
T ss_pred HHHHHhhCCHhhCcHhhCCCCCCcC
Confidence 4689999999999999999988654
No 8
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=92.01 E-value=0.068 Score=35.62 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.4
Q ss_pred hhhhhhcCCCcccccccCCCCC
Q psy14126 2 SSLHKYIHPDTLPADYGGNKPK 23 (81)
Q Consensus 2 ~~l~~~i~~~~lP~r~ggn~p~ 23 (81)
++|+++|+++.||.+|||+++.
T Consensus 246 ~~L~~~i~~~~LP~~yGG~~~~ 267 (296)
T 1aua_A 246 KELLKQIPAENLPVKFGGKSEV 267 (296)
T ss_dssp HHHTTTSCSSSSBGGGTSCBCC
T ss_pred HHHHhhCCHhhCcHHhCCCCCC
Confidence 4689999999999999997765
No 9
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=90.53 E-value=0.09 Score=35.88 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.8
Q ss_pred hhhhhhcCCCcccccccCCCCC
Q psy14126 2 SSLHKYIHPDTLPADYGGNKPK 23 (81)
Q Consensus 2 ~~l~~~i~~~~lP~r~ggn~p~ 23 (81)
++|+++|+++.||.+|||+++.
T Consensus 261 ~~L~~~i~~~~LP~~yGG~~~~ 282 (320)
T 3q8g_A 261 KELLKQIPIENLPVKYGGTSVL 282 (320)
T ss_dssp HHHHHHSCGGGSBGGGTSCBCC
T ss_pred HHHHhhCChhhCChhhCCCCCC
Confidence 5789999999999999997766
No 10
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=89.27 E-value=0.12 Score=35.88 Aligned_cols=22 Identities=41% Similarity=0.777 Sum_probs=19.0
Q ss_pred hhhhhhcCCCcccccccCCCCC
Q psy14126 2 SSLHKYIHPDTLPADYGGNKPK 23 (81)
Q Consensus 2 ~~l~~~i~~~~lP~r~ggn~p~ 23 (81)
++|+++|+++.||.+|||+++.
T Consensus 226 ~~L~~~I~~~~LP~~yGG~~~~ 247 (403)
T 1olm_A 226 EVLLKHISPDQVPVEYGGTMTD 247 (403)
T ss_dssp HHHTTTSCGGGSBGGGTSSBCC
T ss_pred HHHHhhcChhhCchhhCCCcCC
Confidence 4789999999999999996553
No 11
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=60.17 E-value=2.2 Score=28.28 Aligned_cols=51 Identities=10% Similarity=-0.106 Sum_probs=31.7
Q ss_pred CcccccccCC--------CCCc-cchHHH-HHHHHHhccCceEEEcCCChHHHhhhCCCCCC
Q psy14126 11 DTLPADYGGN--------KPKI-NYSSAQ-WYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTL 62 (81)
Q Consensus 11 ~~lP~r~ggn--------~p~~-~~~~~~-~k~fL~~k~~~ri~~~~~~~~~l~~~i~~~~L 62 (81)
..+|.++..| .+.. ...... .+.|...+..+++++.+ +.++|.++|+.+.|
T Consensus 84 ~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~-sl~eL~~~i~~~~L 144 (256)
T 3pg7_A 84 VVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFID-CPGKLAEHIEHEQQ 144 (256)
T ss_dssp TSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEES-STTGGGGTSCGGGC
T ss_pred HHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEEC-CHHHHHhhcCHHHc
Confidence 5567777764 3332 222223 34444447777888874 89999999987655
No 12
>4er8_A Tnparep for protein; protein-DNA complex, guide sequence, catalytic tyrosine, RNA recognition motif, transposase, HUH motif, DNA binding PROT complex; HET: DNA; 2.60A {Escherichia coli}
Probab=49.24 E-value=5.1 Score=24.65 Aligned_cols=24 Identities=21% Similarity=0.531 Sum_probs=19.9
Q ss_pred hHHHhhhCCCCCCCCcCCCCCCCC
Q psy14126 50 MSSLHKYIHPDTLPADYGGNKPKI 73 (81)
Q Consensus 50 ~~~l~~~i~~~~LP~e~GG~~~~~ 73 (81)
+.|++.++....+|.++||.....
T Consensus 134 ~SS~~~~v~~g~~p~dW~~~~~~~ 157 (165)
T 4er8_A 134 FSTFHRDVARGLYPIDWAGDVTDF 157 (165)
T ss_dssp SBSHHHHHHTTSSCTTCCCCCCCS
T ss_pred cccHHHHHhCCCCCCCCCCCCccc
Confidence 457889999999999999987643
No 13
>2k5k_A Uncharacterized protein RHR2; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Rhodobacter sphaeroides 2}
Probab=23.62 E-value=95 Score=16.65 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=15.1
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCC
Q psy14126 58 HPDTLPADYGGNKPKINYSSAQW 80 (81)
Q Consensus 58 ~~~~LP~e~GG~~~~~~~~~~~w 80 (81)
....+|.|+||-.+.-..-.-.|
T Consensus 31 ~~~~~p~E~GG~~G~EPtRYGDW 53 (70)
T 2k5k_A 31 KALDLPKEIGGRNGPEPVRFGDW 53 (70)
T ss_dssp TTCCCCCCSCCCCCCCCCSCCCC
T ss_pred hhccCCcccCCCCCCCCcccccc
Confidence 35577999999877544334444
No 14
>1jxc_A Putative trypsin inhibitor ATTI-2; chymotrypsin inhibitor, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: g.3.7.5
Probab=21.06 E-value=35 Score=18.13 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=9.2
Q ss_pred CCCCCCCcCCCCCCC
Q psy14126 58 HPDTLPADYGGNKPK 72 (81)
Q Consensus 58 ~~~~LP~e~GG~~~~ 72 (81)
+.++| +||||..+-
T Consensus 8 d~eCL-keYggDVgf 21 (68)
T 1jxc_A 8 GNECL-KEYGGDVGF 21 (68)
T ss_dssp SSCCC-CBCCSSCST
T ss_pred hhHHH-HHhCCcCCc
Confidence 34444 789998764
Done!