RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14126
(81 letters)
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain. Found in
secretory proteins, such as S. cerevisiae
phosphatidylinositol transfer protein (Sec14p), and in
lipid regulated proteins such as RhoGAPs, RhoGEFs and
neurofibromin (NF1). SEC14 domain of Dbl is known to
associate with G protein beta/gamma subunits.
Length = 157
Score = 38.1 bits (89), Expect = 7e-05
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 32 YPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGN 69
P L E + F G+ L KYI + LP +YGG
Sbjct: 120 KPFLSEKTRKKIVFLGSDKEELLKYIDKEQLPEEYGGT 157
Score = 29.3 bits (66), Expect = 0.13
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1 MSSLHKYIHPDTLPADYGGN 20
L KYI + LP +YGG
Sbjct: 138 KEELLKYIDKEQLPEEYGGT 157
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain.
Length = 152
Score = 33.4 bits (77), Expect = 0.004
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 32 YPVLDEIEDSIMYFHGNK-MSSLHKYIHPDTLPADYGGN 69
P LD ++FH N + L KYI P+ LP +YGG
Sbjct: 114 KPFLDPKTREKIHFHKNSNLEELLKYIPPEQLPKEYGGT 152
Score = 29.5 bits (67), Expect = 0.12
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 1 MSSLHKYIHPDTLPADYGGN 20
+ L KYI P+ LP +YGG
Sbjct: 133 LEELLKYIPPEQLPKEYGGT 152
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S. cerevisiae
phosphatidylinositol transfer protein (Sec14p). Domain
in homologues of a S. cerevisiae phosphatidylinositol
transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and
the RasGAP, neurofibromin (NF1). Lipid-binding domain.
The SEC14 domain of Dbl is known to associate with G
protein beta/gamma subunits.
Length = 158
Score = 28.4 bits (64), Expect = 0.24
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 45 FHGNKM-SSLHKYIHPDTLPADYGGN 69
F GN L +YI + LP + GG
Sbjct: 131 FVGNDSKEELLEYIDKEQLPEELGGT 156
Score = 28.0 bits (63), Expect = 0.38
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 2 SSLHKYIHPDTLPADYGGN 20
L +YI + LP + GG
Sbjct: 138 EELLEYIDKEQLPEELGGT 156
>gnl|CDD|225364 COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase
PilT [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 353
Score = 26.8 bits (60), Expect = 0.95
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 38 IEDSIMYFHGNKMSSLH-KYIHPDTL 62
IED I Y H +K S ++ + + DTL
Sbjct: 160 IEDPIEYVHESKKSLINQREVGRDTL 185
>gnl|CDD|238551 cd01131, PilT, Pilus retraction ATPase PilT. PilT is a nucleotide
binding protein responsible for the retraction of type
IV pili, likely by pili disassembly. This retraction
provides the force required for travel of bacteria in
low water environments by a mechanism known as
twitching motility.
Length = 198
Score = 26.1 bits (58), Expect = 2.1
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 38 IEDSIMYFHGNKMSSLH-KYIHPDTL 62
IED I + H +K S ++ + + DTL
Sbjct: 36 IEDPIEFVHESKRSLINQREVGLDTL 61
>gnl|CDD|233406 TIGR01420, pilT_fam, pilus retraction protein PilT. This model
represents the PilT subfamily of proteins related to
GspE, a protein involved in type II secretion (also
called the General Secretion Pathway). PilT is an
apparent cytosolic ATPase associated with type IV pilus
systems. It is not required for pilin biogenesis, but is
required for twitching motility and social gliding
behaviors, shown in some species, powered by pilus
retraction. Members of this family may be found in some
species that type IV pili but have related structures
for DNA uptake and natural transformation [Cell
envelope, Surface structures, Cellular processes,
Chemotaxis and motility].
Length = 343
Score = 25.7 bits (57), Expect = 2.4
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 38 IEDSIMYFHGNKMSSLH-KYIHPDTL 62
IED I Y H NK S ++ + + DTL
Sbjct: 157 IEDPIEYVHKNKRSLINQREVGEDTL 182
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain. This family
includes divergent members of the CRAL-TRIO domain
family. This family includes ECM25 that contains a
divergent CRAL-TRIO domain identified by Gallego and
colleagues.
Length = 149
Score = 25.4 bits (56), Expect = 3.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 46 HGNKMSSLHKYIHPDTLPADYGG 68
+ + +S L +YI P LP + GG
Sbjct: 120 YVSSLSELSEYIDPTQLPLELGG 142
>gnl|CDD|192232 pfam09220, LA-virus_coat, L-A virus, major coat protein. Members
of this family form the major coat protein of the
Saccharomyces cerevisiae L-A virus.
Length = 436
Score = 25.0 bits (54), Expect = 4.8
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 21 KPKINYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQW 80
P+ N + P ++ D Y H + ++I D + K K+ S+ +
Sbjct: 222 HPQTNLAIDFEAP---QLADKFAYRHALPIQDADEWIDADGTADQFRLPKSKVILSALRK 278
Query: 81 Y 81
Y
Sbjct: 279 Y 279
>gnl|CDD|185433 PTZ00079, PTZ00079, NADP-specific glutamate dehydrogenase;
Provisional.
Length = 454
Score = 25.1 bits (55), Expect = 5.2
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 39 EDSIMYFHGNKMSSLHKYIHPDT-LPA-DYGGNKPKINYSSAQW 80
++ +M F + M+ L+++I PDT +PA D G +I Y Q+
Sbjct: 145 DNEVMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQY 188
>gnl|CDD|240618 cd12219, UBL_TBK1_like, Ubiquitin-Like Domain Of Human Tbk1 and
similar proteins. This family contains ubiquitin-like
domain (UBL) found in TANK-binding kinase 1 (TBK1) and
similar proteins. TBK1 regulates factors such as IRF3
and IRF7, promoting antiviral activity in the
interferon signaling pathways. In addition to the
central UBL, these proteins have an N-terminal kinase
domain and a C-terminal elongated helical domain. The
ubiquitin-like domain acts as a protein-protein
interaction domain, and has been implicated in
regulating kinase activity, which modulates
interactions in the IFN pathway.
Length = 89
Score = 24.1 bits (53), Expect = 6.1
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 45 FHGNKMSSLHKYIHPD 60
F N+ +S YIHP+
Sbjct: 18 FSVNQATSHKVYIHPE 33
>gnl|CDD|227376 COG5043, MRS6, Vacuolar protein sorting-associated protein
[Intracellular trafficking and secretion].
Length = 2552
Score = 24.8 bits (54), Expect = 6.4
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 25 NYSSAQWYPVLDEIEDSIMYFHGNKMSSLH 54
N+S + W PVL+ + H ++ S
Sbjct: 1678 NFSRSHWEPVLEPWKVG---VHISRNDSKT 1704
>gnl|CDD|215121 PLN02189, PLN02189, cellulose synthase.
Length = 1040
Score = 25.0 bits (54), Expect = 6.6
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 14 PADYGGNKPKINYSSAQWYPVLDEIEDSIMYFHGNKM--SSLHKYIHP 59
P D N+ + + PV E Y HG +M SSLHK +HP
Sbjct: 138 PDDDENNQFPPVITGVRSRPVSGEFPIGSGYGHGEQMLSSSLHKRVHP 185
>gnl|CDD|181834 PRK09414, PRK09414, glutamate dehydrogenase; Provisional.
Length = 445
Score = 24.7 bits (55), Expect = 7.3
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 42 IMYFHGNKMSSLHKYIHPDT-LPA 64
IM F + M+ L+++I PDT +PA
Sbjct: 143 IMRFCQSFMTELYRHIGPDTDVPA 166
>gnl|CDD|165199 PHA02865, PHA02865, MHC-like TNF binding protein; Provisional.
Length = 338
Score = 24.4 bits (53), Expect = 7.8
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 22 PKINYSSAQWYPVLDEIEDSIMYFHGNKMSSL 53
P +Y+ W ++ E + I K +SL
Sbjct: 80 PGNDYNFNFWLNLMKETLEEINKNESTKYTSL 111
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.134 0.430
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,234,061
Number of extensions: 318887
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 22
Length of query: 81
Length of database: 10,937,602
Length adjustment: 50
Effective length of query: 31
Effective length of database: 8,719,902
Effective search space: 270316962
Effective search space used: 270316962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.2 bits)