RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14126
         (81 letters)



>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein,
           11-CIS-retinal, bothnia dystrophy, acetylation,
           cytoplasm, disease mutation; HET: RET; 1.69A {Homo
           sapiens} PDB: 3hy5_A*
          Length = 316

 Score = 50.1 bits (120), Expect = 4e-09
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 32  YPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINY 75
            P L       ++ HG+ +S  ++ I  + LP+D+GG  PK + 
Sbjct: 254 KPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGGTLPKYDG 297



 Score = 39.0 bits (91), Expect = 4e-05
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 1   MSSLHKYIHPDTLPADYGGNKPKINY 26
           +S  ++ I  + LP+D+GG  PK + 
Sbjct: 272 LSGFYQEIDENILPSDFGGTLPKYDG 297


>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with
           vitamin E deficiency, transport protein; HET: MSE VIV;
           1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A*
           1oip_A*
          Length = 262

 Score = 46.9 bits (112), Expect = 5e-08
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 33  PVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQWY 81
           P L E     ++ HGN          PD LP +YGG +  +     +W 
Sbjct: 196 PFLTEKIKERIHMHGNNYKQSLLQHFPDILPLEYGGEEFSMEDICQEWT 244



 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 8/58 (13%)

Query: 1   MSSLHKYIHPDTLPADYGGNKPKINYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIH 58
                    PD LP +YGG +  +     +W   + + ED   Y      SS+ + I 
Sbjct: 213 YKQSLLQHFPDILPLEYGGEEFSMEDICQEWTNFIMKSED---YL-----SSISESIQ 262


>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif,
           signaling protein, directed evoluti SEC14, phospholipid
           transporter, lipid; HET: PEE; 1.80A {Saccharomyces
           cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
          Length = 320

 Score = 33.7 bits (77), Expect = 0.002
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 32  YPVLDEIEDSIMYFHGNK-MSSLHKYIHPDTLPADYGGN 69
            P LD +  S ++  G+     L K I  + LP  YGG 
Sbjct: 241 KPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYGGT 279



 Score = 29.0 bits (65), Expect = 0.10
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 1   MSSLHKYIHPDTLPADYGGN 20
              L K I  + LP  YGG 
Sbjct: 260 KKELLKQIPIENLPVKYGGT 279


>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding
           protein, peripheral golgi membrane protein, phospholipid
           exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae}
           SCOP: a.5.3.1 c.13.1.1
          Length = 296

 Score = 33.6 bits (77), Expect = 0.003
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 32  YPVLDEIEDSIMYFHGNK-MSSLHKYIHPDTLPADYGGN 69
            P LD +  S ++  G+     L K I  + LP  +GG 
Sbjct: 226 KPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGGK 264



 Score = 29.3 bits (66), Expect = 0.091
 Identities = 7/20 (35%), Positives = 9/20 (45%)

Query: 1   MSSLHKYIHPDTLPADYGGN 20
              L K I  + LP  +GG 
Sbjct: 245 QKELLKQIPAENLPVKFGGK 264


>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
           biosynthesis, oxidized vitamin E, lipid-binding,
           transport, transcription regulation; HET: VTQ; 1.95A
           {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
           1o6u_A* 1olm_E*
          Length = 403

 Score = 33.0 bits (75), Expect = 0.004
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 10  PDTLPADYGGNKPKI-NYSSAQWYPVLDEIEDSIMYFHGNKM-SSLHKYIHPDTLPADYG 67
           P+TL   +    PK+   +     P L E     +   G      L K+I PD +P +YG
Sbjct: 183 PETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYG 242

Query: 68  GNKPKINYSS 77
           G     + + 
Sbjct: 243 GTMTDPDGNP 252



 Score = 27.6 bits (61), Expect = 0.38
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 1   MSSLHKYIHPDTLPADYGGNKPKINYSS 28
              L K+I PD +P +YGG     + + 
Sbjct: 225 KEVLLKHISPDQVPVEYGGTMTDPDGNP 252


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.8 bits (71), Expect = 0.011
 Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 2/17 (11%)

Query: 49 KM-SSLHKYIHPDTLPA 64
          K+ +SL  Y   D+ PA
Sbjct: 24 KLQASLKLY-ADDSAPA 39



 Score = 31.1 bits (69), Expect = 0.022
 Identities = 6/14 (42%), Positives = 8/14 (57%), Gaps = 1/14 (7%)

Query: 2  SSLHKYIHPDTLPA 15
          +SL  Y   D+ PA
Sbjct: 27 ASLKLY-ADDSAPA 39


>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A
           {Escherichia coli} PDB: 3sbo_A 2yfg_E
          Length = 447

 Score = 25.7 bits (57), Expect = 1.7
 Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 1   MSSLHKYIHPDT-LPA-DYGGNKPKINY 26
           M+ L++++  DT +PA D G    ++ +
Sbjct: 151 MTELYRHLGADTDVPAGDIGVGGREVGF 178



 Score = 25.7 bits (57), Expect = 1.7
 Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 50  MSSLHKYIHPDT-LPA-DYGGNKPKINY 75
           M+ L++++  DT +PA D G    ++ +
Sbjct: 151 MTELYRHLGADTDVPAGDIGVGGREVGF 178


>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis,
           oligomer organization, oxidoreductase; 2.7A {Plasmodium
           falciparum}
          Length = 470

 Score = 25.0 bits (55), Expect = 3.2
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 1   MSSLHKYIHPDT-LPA-DYGGNKPKINY 26
           M+ L+++I P T +PA D G    +I Y
Sbjct: 171 MNELYRHIGPCTDVPAGDIGVGGREIGY 198



 Score = 25.0 bits (55), Expect = 3.2
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 50  MSSLHKYIHPDT-LPA-DYGGNKPKINY 75
           M+ L+++I P T +PA D G    +I Y
Sbjct: 171 MNELYRHIGPCTDVPAGDIGVGGREIGY 198


>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A
           {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB:
           1hrd_A 1k89_A 1aup_A 2yfh_A
          Length = 449

 Score = 24.9 bits (55), Expect = 3.7
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 1   MSSLHKYIHPDT-LPA-DYGGNKPKINY 26
           M+ L+++I PD  +PA D G    +I Y
Sbjct: 148 MTELYRHIGPDIDVPAGDLGVGAREIGY 175



 Score = 24.9 bits (55), Expect = 3.7
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 50  MSSLHKYIHPDT-LPA-DYGGNKPKINY 75
           M+ L+++I PD  +PA D G    +I Y
Sbjct: 148 MTELYRHIGPDIDVPAGDLGVGAREIGY 175


>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
           3.10A {Plasmodium falciparum}
          Length = 456

 Score = 24.5 bits (54), Expect = 4.5
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 1   MSSLHKYIHPDT-LPA-DYGGNKPKINY 26
           M++L +YI P+T +PA D G    +I Y
Sbjct: 158 MTNLFRYIGPNTDVPAGDIGVGGREIGY 185



 Score = 24.5 bits (54), Expect = 4.5
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 50  MSSLHKYIHPDT-LPA-DYGGNKPKINY 75
           M++L +YI P+T +PA D G    +I Y
Sbjct: 158 MTNLFRYIGPNTDVPAGDIGVGGREIGY 185


>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding
           domain, angiogenesis, developmental protein,
           differentiation; HET: NAG FUC; 2.00A {Homo sapiens}
           SCOP: b.18.1.2 b.18.1.2 b.23.1.1
          Length = 450

 Score = 23.9 bits (51), Expect = 8.8
 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 23  KINYS--SAQWYPVLDEIEDSIMYFHGN 48
           KI YS   + W  ++D+ +     F GN
Sbjct: 380 KIGYSNNGSDWKMIMDDSKRKAKSFEGN 407


>4er8_A Tnparep for protein; protein-DNA complex, guide sequence, catalytic
           tyrosine, RNA recognition motif, transposase, HUH motif,
           DNA binding PROT complex; HET: DNA; 2.60A {Escherichia
           coli}
          Length = 165

 Score = 23.5 bits (50), Expect = 9.8
 Identities = 5/21 (23%), Positives = 10/21 (47%)

Query: 2   SSLHKYIHPDTLPADYGGNKP 22
           S+ H+ +     P D+ G+  
Sbjct: 135 STFHRDVARGLYPIDWAGDVT 155



 Score = 23.5 bits (50), Expect = 9.8
 Identities = 5/21 (23%), Positives = 10/21 (47%)

Query: 51  SSLHKYIHPDTLPADYGGNKP 71
           S+ H+ +     P D+ G+  
Sbjct: 135 STFHRDVARGLYPIDWAGDVT 155


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.314    0.134    0.430 

Gapped
Lambda     K      H
   0.267   0.0523    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,317,646
Number of extensions: 63249
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 30
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.9 bits)