RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14126
         (81 letters)



>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 185

 Score = 45.0 bits (106), Expect = 7e-08
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 33  PVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQWY 81
           P L E     ++ HGN          PD LP +YGG +  +     +W 
Sbjct: 122 PFLTEKIKERIHMHGNNYKQSLLQHFPDILPLEYGGEEFSMEDICQEWT 170



 Score = 39.6 bits (92), Expect = 6e-06
 Identities = 10/40 (25%), Positives = 16/40 (40%)

Query: 1   MSSLHKYIHPDTLPADYGGNKPKINYSSAQWYPVLDEIED 40
                    PD LP +YGG +  +     +W   + + ED
Sbjct: 139 YKQSLLQHFPDILPLEYGGEEFSMEDICQEWTNFIMKSED 178


>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of
           phosphatidylinositol transfer protein sec14p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 203

 Score = 35.1 bits (80), Expect = 2e-04
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 1   MSSLHKYIHPDTLPADYGGNKPKINYSSAQWY-PVLDEIEDSIMYFHGNK-MSSLHKYIH 58
            S + +  +P+ +   Y  N P    ++ + + P LD +  S ++  G+     L K I 
Sbjct: 101 ASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIP 160

Query: 59  PDTLPADYGGN 69
            + LP  +GG 
Sbjct: 161 AENLPVKFGGK 171


>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF),
           middle domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 199

 Score = 32.7 bits (74), Expect = 0.002
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 33  PVLDEIEDSIMYFHGNK-MSSLHKYIHPDTLPADYGGNKP 71
           P L E     +   G      L K+I PD +P +YGG   
Sbjct: 132 PFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTMT 171



 Score = 29.3 bits (65), Expect = 0.033
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 1   MSSLHKYIHPDTLPADYGGNKP 22
              L K+I PD +P +YGG   
Sbjct: 150 KEVLLKHISPDQVPVEYGGTMT 171


>d1m1ca_ e.42.1.1 (A:) L-A virus major coat protein {Saccharomyces
           cerevisiae virus L-A [TaxId: 11008]}
          Length = 651

 Score = 23.4 bits (50), Expect = 3.8
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 21  KPKINYSSAQWYPVLDEIEDSIMYFHGNKMSSLHKYIHPDTLPADYGGNKPKINYSSAQW 80
             + N +     P   ++ D   Y H   +    ++I  D     +     K+  S+ + 
Sbjct: 222 HRRTNLAIDYEAP---QLADKFAYRHALTVQDADEWIEGDRTDDQFRPPSSKVMLSALRK 278

Query: 81  Y 81
           Y
Sbjct: 279 Y 279


>d1adta2 g.51.1.1 (A:266-385) First Zn-domain of early E2A
          DNA-binding protein, ADDBP {Human adenovirus type 5
          [TaxId: 28285]}
          Length = 120

 Score = 22.9 bits (49), Expect = 4.4
 Identities = 7/20 (35%), Positives = 9/20 (45%)

Query: 31 WYPVLDEIEDSIMYFHGNKM 50
          W     EIE  +   HG+ M
Sbjct: 6  WLHRCAEIEGELKCLHGSIM 25


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.134    0.430 

Gapped
Lambda     K      H
   0.267   0.0554    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 338,268
Number of extensions: 13238
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 14
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.3 bits)