BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14127
(76 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YSD|A Chain A, Solution Structure Of The First Ww Domain From The Human
Membrane-Associated Guanylate Kinase, Ww And Pdz
Domain- Containing Protein 1. Magi-1
Length = 57
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
PLPE W+ A +G+VYFIDHNTK T+W+DPR
Sbjct: 14 PLPENWEMAYTENGEVYFIDHNTKTTSWLDPR 45
>pdb|2LAW|A Chain A, Structure Of The Second Ww Domain From Human Yap In
Complex With A Human Smad1 Derived Peptide
Length = 38
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
E PLP+GW+ A DG++Y+I+H K T+W+DPR
Sbjct: 4 EGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site
Within The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 22/32 (68%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
PLP GW+ +VYF+DHNTK TTW DPR
Sbjct: 8 PLPSGWEMRLTNTARVYFVDHNTKTTTWDDPR 39
>pdb|3L4H|A Chain A, Helical Box Domain And Second Ww Domain Of The Human E3
Ubiq Protein Ligase Hecw1
Length = 109
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 6 IPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
+ LP GW+ D GK +F+DHN++ TT+IDPR
Sbjct: 71 LELPRGWEIKTDQQGKSFFVDHNSRATTFIDPR 103
>pdb|2JO9|A Chain A, Mouse Itch 3rd Ww Domain Complex With The Epstein-Barr
Virus Latent Membrane Protein 2a Derived Peptide
Eeppppyed
pdb|1YIU|A Chain A, Itch E3 Ubiquitin Ligase Ww3 Domain
Length = 37
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39
PLP GW+ D +G+VYF++HNT+ T W DPR
Sbjct: 5 PLPPGWEKRTDSNGRVYFVNHNTRITQWEDPRS 37
>pdb|2L4J|A Chain A, Yap Ww2
Length = 46
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
PLPEGW+ A +G++Y+I+H K T+W+DPR
Sbjct: 11 PLPEGWEQAITPEGEIYYINHKNKTTSWLDPR 42
>pdb|2LTV|A Chain A, Yap Ww2 In Complex With A Smad7 Derived Peptide
Length = 36
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
PLP+GW+ A DG++Y+I+H K T+W+DPR
Sbjct: 2 PLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 33
>pdb|1I5H|W Chain W, Solution Structure Of The Rnedd4 Wwiii Domain-Renac Bp2
Peptide Complex
Length = 50
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
PLP GW+ DG+V+FI+HN KKT W DPR
Sbjct: 11 PLPPGWEERTHTDGRVFFINHNIKKTQWEDPR 42
>pdb|2OP7|A Chain A, Ww4
Length = 39
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39
E PLPEGW+ +G YF+DHNT+ TT+ DPR+
Sbjct: 2 EEPLPEGWEIRYTREGVRYFVDHNTRTTTFKDPRN 36
>pdb|2KPZ|A Chain A, Human Nedd4 3rd Ww Domain Complex With The Human T-Cell
Leukemia Virus 1 Gag-Pro Poliprotein Derived Peptide
Sdpqipppyvep
pdb|2KQ0|A Chain A, Human Nedd4 3rd Ww Domain Complex With Ebola Zaire Virus
Matrix Protein Vp40 Derived Peptide Ilptappeymea
Length = 49
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 8 LPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
LP+GW+ +G+ +FIDHNTK TTW DPR
Sbjct: 13 LPKGWEVRHAPNGRPFFIDHNTKTTTWEDPR 43
>pdb|2DJY|A Chain A, Solution Structure Of Smurf2 Ww3 Domain-Smad7 Py Peptide
Complex
Length = 42
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
G PLP GW+ G+VYF+DHN + T + DPR
Sbjct: 4 GSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPR 38
>pdb|1E0M|A Chain A, Prototype Ww Domain
Length = 37
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
+ LP GWD + ++GK Y+ +HNTK +TW DPR
Sbjct: 1 SMGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPR 34
>pdb|2YSF|A Chain A, Solution Structure Of The Fourth Ww Domain From The
Human E3 Ubiquitin-Protein Ligase Itchy Homolog, Itch
Length = 40
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
+G LPEGW+ DG YF+DHN + TT+IDPR
Sbjct: 3 SGSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPR 38
>pdb|2EZ5|W Chain W, Solution Structure Of The Dnedd4 Ww3 Domain- Comm Lpsy
Peptide Complex
Length = 46
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39
E PLP W +G+ +FIDH +++TTWIDPR+
Sbjct: 8 EEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRN 42
>pdb|2JOC|A Chain A, Mouse Itch 3rd Domain Phosphorylated In T30
Length = 37
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39
PLP GW+ D +G+VYF++HNT+ W DPR
Sbjct: 5 PLPPGWEKRTDSNGRVYFVNHNTRIXQWEDPRS 37
>pdb|2LAX|A Chain A, Structure Of First Ww Domain Of Human Yap In Complex
With A Human Smad1 Doubly-Phosphorilated Derived
Peptide
Length = 40
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
++PLP GW+ A+ G+ YF++H + TTW DPR
Sbjct: 5 DVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDPR 38
>pdb|1WR7|A Chain A, Solution Structure Of The Third Ww Domain Of Nedd4-2
Length = 41
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 8 LPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
LP GW+ +G+ +FIDHNTK TTW DPR
Sbjct: 9 LPPGWEMRIAPNGRPFFIDHNTKTTTWEDPR 39
>pdb|2LTZ|A Chain A, Smurf2 Ww3 Domain In Complex With A Smad7 Derived
Peptide
Length = 37
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
PLP GW+ G+VYF+DHN + T + DPR
Sbjct: 2 PLPPGWEIRNTATGRVYFVDHNNRTTQFTDPR 33
>pdb|2LAY|A Chain A, Structure Of The First Ww Domain Of Human Yap In Complex
With A Phosphorylated Human Smad1 Derived Peptide
pdb|2LTW|A Chain A, Yap Ww1 In Complex With A Smad7 Derived Peptide
Length = 36
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
++PLP GW+ A+ G+ YF++H + TTW DPR
Sbjct: 1 DVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDPR 34
>pdb|2KXQ|A Chain A, Solution Structure Of Smurf2 Ww2 And Ww3 Bound To Smad7
Py Motif Containing Peptide
Length = 90
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
PLP GW+ G+VYF+DHN + T + DPR
Sbjct: 55 PLPPGWEIRNTATGRVYFVDHNNRTTQFTDPR 86
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 8 LPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
LPEG++ G+VYF+ T +TW DPR
Sbjct: 10 LPEGYEQRTTQQGQVYFLHTQTGVSTWHDPR 40
>pdb|2LB1|A Chain A, Structure Of The Second Domain Of Human Smurf1 In
Complex With A Human Smad1 Derived Peptide
Length = 35
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
PLP GW+ G++YF+DHN + T + DPR
Sbjct: 3 PLPPGWEVRSTVSGRIYFVDHNNRTTQFTDPR 34
>pdb|2LTX|A Chain A, Smurf1 Ww2 Domain In Complex With A Smad7 Derived
Peptide
Length = 35
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
PLP GW+ G++YF+DHN + T + DPR
Sbjct: 2 PLPPGWEVRSTVSGRIYFVDHNNRTTQFTDPR 33
>pdb|1K9Q|A Chain A, Yap65 Ww Domain Complexed To N-(N-Octyl)-Gpppy-Nh2
pdb|1K9R|A Chain A, Yap65 Ww Domain Complexed To Acetyl-Plppy
Length = 40
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
++PLP GW+ A+ G+ YF++H + TTW DPR
Sbjct: 6 DVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDPR 39
>pdb|2JMF|A Chain A, Solution Structure Of The Su(Dx) Ww4- Notch Py Peptide
Complex
Length = 53
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
E PLP GW+ G+ +F+DHNT++TT+ DPR
Sbjct: 16 EGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 49
>pdb|1WMV|A Chain A, Solution Structure Of The Second Ww Domain Of Wwox
Length = 54
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 8 LPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDP 47
LP GW+ D +G+V+F+DH K+TT++DPR + ++P
Sbjct: 12 LPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDNP 51
>pdb|1K5R|A Chain A, Yap65 Ww Domain S24-Amino-Ethylsulfanyl-Acetic Acid
Mutant
Length = 41
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
++PLP GW+ A+ G+ YF++H + TTW DPR
Sbjct: 6 DVPLPAGWEMAKTSXGQRYFLNHIDQTTTWQDPR 39
>pdb|2LAJ|A Chain A, Third Ww Domain Of Human Nedd4l In Complex With Doubly
Phosphorylated Human Smad3 Derived Peptide
Length = 44
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 8 LPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRY 41
LP GW+ +G+ +F DHNTK TTW DPR ++
Sbjct: 8 LPPGWEMRIAPNGRPFFYDHNTKTTTWEDPRLKF 41
>pdb|1TK7|A Chain A, Nmr Structure Of Ww Domains (Ww3-4) From Suppressor Of
Deltex
Length = 88
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
E PLP GW+ G+ +F+DHNT++TT+ DPR
Sbjct: 54 EGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 87
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
PLP+GW+ D +VYF++H + T W DPR
Sbjct: 12 PLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPR 43
>pdb|1JMQ|A Chain A, Yap65 (L30k Mutant) Ww Domain In Complex With Gtppppytvg
Peptide
Length = 46
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
++PLP GW+ A+ G+ YF +H + TTW DPR
Sbjct: 6 DVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPR 39
>pdb|1WR4|A Chain A, Solution Structure Of The Second Ww Domain Of Nedd4-2
Length = 36
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDP 37
G LP GW+ +D G+ Y+++HN + TTW P
Sbjct: 1 GSPGLPSGWEERKDAKGRTYYVNHNNRTTTWTRP 34
>pdb|2LB2|A Chain A, Structure Of The Second Domain Of Human Nedd4l In
Complex With A Phosphorylated Ptpy Motif Derived From
Human Smad3
Length = 35
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 8 LPEGWDFAQDYDGKVYFIDHNTKKTTWIDP 37
LP GW+ +D G+ Y+++HN + TTW P
Sbjct: 2 LPSGWEERKDAKGRTYYVNHNNRTTTWTRP 31
>pdb|2YSG|A Chain A, Solution Structure Of The Ww Domain From The Human
Syntaxin- Binding Protein 4
Length = 40
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 2 RNGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDP 37
+G LP GW+ A DG YFI+H T+ T+WI P
Sbjct: 2 SSGSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHP 37
>pdb|2KYK|A Chain A, The Sandwich Region Between Two Lmp2a Py Motif Regulates
The Interaction Between Aip4ww2domain And Py Motif
Length = 39
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDP 37
PLP GW+ D G++Y++DH T+ TTW P
Sbjct: 6 PLPPGWERRVDNMGRIYYVDHFTRTTTWQRP 36
>pdb|2LTY|A Chain A, Nedd4l Ww2 Domain In Complex With A Smad7 Derived
Peptide
Length = 34
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 8 LPEGWDFAQDYDGKVYFIDHNTKKTTWIDP 37
LP GW+ +D G+ Y+++HN + TTW P
Sbjct: 3 LPSGWEERKDAKGRTYYVNHNNRTTTWTRP 32
>pdb|2DMV|A Chain A, Solution Structure Of The Second Ww Domain Of Itchy
Homolog E3 Ubiquitin Protein Ligase (Itch)
Length = 43
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDP 37
+G LP GW+ D G+VY++DH K+TTW P
Sbjct: 3 SGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRP 37
>pdb|1WR3|A Chain A, Solution Structure Of The First Ww Domain Of Nedd4-2
Length = 36
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDP 37
G PLP GW+ D G+ Y+++HN + T W P
Sbjct: 1 GSPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRP 34
>pdb|2YSB|A Chain A, Solution Structure Of The First Ww Domain From The Mouse
Salvador Homolog 1 Protein (Sav1)
Length = 49
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDP 37
++PLP GW G+ Y+IDHNT T W P
Sbjct: 9 DLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHP 41
>pdb|1YMZ|A Chain A, Cc45, An Artificial Ww Domain Designed Using Statistical
Coupling Analysis
Length = 43
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDP 37
+PLP GW+ D +GKVY+ + T TTW P
Sbjct: 6 SMPLPPGWERRTDVEGKVYYFNVRTLTTTWERP 38
>pdb|2LB0|A Chain A, Structure Of The First Ww Domain Of Human Smurf1 In
Complex With A Di- Phosphorylated Human Smad1 Derived
Peptide
Length = 36
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
G + LPEG++ G+VYF+ T +TW DPR
Sbjct: 1 GAMELPEGYEQRTTVQGQVYFLHTQTGVSTWHDPR 35
>pdb|2LAZ|A Chain A, Structure Of The First Ww Domain Of Human Smurf1 In
Complex With A Mono-Phosphorylated Human Smad1 Derived
Peptide
Length = 33
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 8 LPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
LPEG++ G+VYF+ T +TW DPR
Sbjct: 2 LPEGYEQRTTVQGQVYFLHTQTGVSTWHDPR 32
>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
Length = 162
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDP 37
E LP GW+ DG+VY+ +H T + W P
Sbjct: 4 EEKLPPGWEKRMSADGRVYYFNHITNASQWERP 36
>pdb|1O6W|A Chain A, Solution Structure Of The Prp40 Ww Domain Pair Of The
Yeast Splicing Factor Prp40
Length = 75
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 11 GWDFAQDYDGKVYFIDHNTKKTTWIDP 37
GW A+ DGKVY+ + T++T+W P
Sbjct: 44 GWKAAKTADGKVYYYNPTTRETSWTIP 70
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 12 WDFAQDYDGKVYFIDHNTKKTTWIDPRD 39
W A+D G++Y+ + TKK+TW P++
Sbjct: 4 WKEAKDASGRIYYYNTLTKKSTWEKPKE 31
>pdb|2YSE|A Chain A, Solution Structure Of The Second Ww Domain From The
Human Membrane-Associated Guanylate Kinase, Ww And Pdz
Domain- Containing Protein 1. Magi-1
Length = 60
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDP 37
+ E+ LP GW+ +D +Y++DH +KT + +P
Sbjct: 9 DSELELPAGWEKIEDPVYGIYYVDHINRKTQYENP 43
>pdb|2ZAJ|A Chain A, Solution Structure Of The Short-Isoform Of The Second Ww
Domain From The Human Membrane-Associated Guanylate
Kinase, Ww And Pdz Domain-Containing Protein 1 (Magi-1)
Length = 49
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDP 37
E+ LP GW+ +D +Y++DH +KT + +P
Sbjct: 11 ELELPAGWEKIEDPVYGIYYVDHINRKTQYENP 43
>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding
Domains By O- Phosphorylated Natural Product
Derivatives
Length = 166
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 5 EIPLPEGWDFAQD-YDGKVYFIDHNTKKTTWIDP 37
E LP GW+ A G+VY+ +H T + W P
Sbjct: 7 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 40
>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
Length = 167
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 5 EIPLPEGWDFAQD-YDGKVYFIDHNTKKTTWIDP 37
E LP GW+ A G+VY+ +H T + W P
Sbjct: 8 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 41
>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
pdb|3OOB|A Chain A, Structural And Functional Insights Of Directly Targeting
Pin1 By Epigallocatechin-3-Gallate
Length = 163
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 5 EIPLPEGWDFAQD-YDGKVYFIDHNTKKTTWIDP 37
E LP GW+ A G+VY+ +H T + W P
Sbjct: 4 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 37
>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|3NTP|A Chain A, Human Pin1 Complexed With Reduced Amide Inhibitor
Length = 167
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 5 EIPLPEGWDFAQD-YDGKVYFIDHNTKKTTWIDP 37
E LP GW+ A G+VY+ +H T + W P
Sbjct: 8 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 41
>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor
pdb|3TDB|A Chain A, Human Pin1 Bound To Trans Peptidomimetic Inhibitor
Length = 158
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 8 LPEGWDFAQD-YDGKVYFIDHNTKKTTWIDP 37
LP GW+ A G+VY+ +H T + W P
Sbjct: 2 LPPGWEKAMSRSSGRVYYFNHITNASQWERP 32
>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDR|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With The Inhibitor
A- 443654
pdb|2UW9|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|2X39|A Chain A, Structure Of
4-Amino-N-(4-Chlorobenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidine-4-Carboxamide Bound To Pkb
pdb|2XH5|A Chain A, Structure Of 4-(4-Tert-Butylbenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidin-4-Amine Bound To Pkb
Length = 342
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 23 YFIDHNTKKTTWIDPRDRYDTLEDPRLEWRAIQE 56
YF D T ++ I P DRYD+L L+ R QE
Sbjct: 298 YFDDEFTAQSITITPPDRYDSLGLLELDQREEQE 331
>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B
(pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3
Peptide
Length = 337
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 23 YFIDHNTKKTTWIDPRDRYDTLEDPRLEWRAIQE 56
YF D T ++ I P DRYD+L L+ R QE
Sbjct: 293 YFDDEFTAQSITITPPDRYDSLGLLELDQREEQE 326
>pdb|1RIE|A Chain A, Structure Of A Water Soluble Fragment Of The Rieske
Iron- Sulfur Protein Of The Bovine Heart Mitochondrial
Cytochrome Bc1-complex
Length = 129
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 8 LPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDPR 48
+PEG + A + GK F+ H TKK + L DP+
Sbjct: 14 IPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQ 54
>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant
Length = 161
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDP 37
E LP GW+ + +G+VY+ +H T + W P
Sbjct: 4 EEKLPPGWE-KRMSNGRVYYFNHITNASQWERP 35
>pdb|2DWV|A Chain A, Solution Structure Of The Second Ww Domain From Mouse
Salvador Homolog 1 Protein (Mww45)
pdb|2DWV|B Chain B, Solution Structure Of The Second Ww Domain From Mouse
Salvador Homolog 1 Protein (Mww45)
Length = 49
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 8 LPEGWDFAQDYDGKVYFIDHNTKKTTWIDP 37
LP GW+ + + Y++DH K+ + P
Sbjct: 14 LPPGWERVESSEFGTYYVDHTNKRAQYRHP 43
>pdb|1EG3|A Chain A, Structure Of A Dystrophin Ww Domain Fragment In Complex
With A Beta-Dystroglycan Peptide
pdb|1EG4|A Chain A, Structure Of A Dystrophin Ww Domain Fragment In Complex
With A Beta-Dystroglycan Peptide
Length = 261
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 16/78 (20%)
Query: 12 WDFAQDYDGKVYFIDHNTKKTTWIDPR--DRYDTLED----------PRLEWRAIQEAML 59
W+ A + Y+I+H T+ T W P+ + Y +L D ++ R +Q+A+
Sbjct: 16 WERAISPNKVPYYINHETQTTCWDHPKMTELYQSLADLNNVRFSAYRTAMKLRRLQKALC 75
Query: 60 REYLTTAHH----DSHNM 73
+ L+ + D HN+
Sbjct: 76 LDLLSLSAACDALDQHNL 93
>pdb|1QCR|E Chain E, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
pdb|1BGY|E Chain E, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|Q Chain Q, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|E Chain E, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|E Chain E, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|E Chain E, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|E Chain E, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|R Chain R, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|E Chain E, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|R Chain R, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1SQB|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|2A06|E Chain E, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|R Chain R, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQP|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
pdb|1SQQ|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|E Chain E, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|E Chain E, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|EE Chain e, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 196
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 8 LPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDPR 48
+PEG + A + GK F+ H TKK + L DP+
Sbjct: 81 IPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQ 121
>pdb|2QC5|A Chain A, Streptogramin B Lyase Structure
Length = 300
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDP 47
N IP + DGKV+F H K + +D R E P
Sbjct: 14 NLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVP 58
>pdb|1BCC|E Chain E, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|E Chain E, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|E Chain E, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 196
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 8 LPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDPR 48
+PEG + A + GK F+ H TKK + L DP+
Sbjct: 81 IPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQ 121
>pdb|4H3T|A Chain A, Crystal Structure Of Crispr-Associated Protein Cse1 From
Acidimicrobium Ferrooxidans
Length = 543
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 42 DTLEDPRLEWRAIQEAMLRE 61
D LE PR EW A+ EA+ R+
Sbjct: 478 DDLERPRAEWAALVEAVARD 497
>pdb|1DEQ|C Chain C, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|F Chain F, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|P Chain P, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|S Chain S, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 411
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 10 EGWDFAQDYDGKVYFIDHNTKK-TTWIDPRDRYD 42
+G+DF D K +F HN + +TW D+YD
Sbjct: 291 DGYDFGDDSSDK-FFTSHNGMQFSTWDSDNDKYD 323
>pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 1210
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 34 WIDPRDRYDTLEDPRLEWRAIQEAMLREYLTTAHHDSHNMIVM 76
I+ +DRYD + R W A+ + L EYL A + MI M
Sbjct: 648 LIEDKDRYDIDPEQRFGWTALVSSGLIEYL-DAEEEETVMIAM 689
>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 5 EIPLPEGWDFAQD-YDGKVYFIDHNTKKTTWIDP 37
E LP GW+ G+VY+ +H T + W P
Sbjct: 4 EEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 5 EIPLPEGWDFAQD-YDGKVYFIDHNTKKTTWIDP 37
E LP GW+ G+VY+ +H T + W P
Sbjct: 4 EEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo
Sapiens
pdb|1NMV|A Chain A, Solution Structure Of Human Pin1
Length = 163
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 5 EIPLPEGWDFAQD-YDGKVYFIDHNTKKTTWIDP 37
E LP GW+ G+VY+ +H T + W P
Sbjct: 4 EEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 5 EIPLPEGWDFAQD-YDGKVYFIDHNTKKTTWIDP 37
E LP GW+ G+VY+ +H T + W P
Sbjct: 4 EEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 37
>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline
Recognition By Group Iv Ww Domains
Length = 167
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 5 EIPLPEGWDFAQD-YDGKVYFIDHNTKKTTWIDP 37
E LP GW+ G+VY+ +H T + W P
Sbjct: 8 EEKLPPGWEKRMSRSSGRVYYFNHITNASQWERP 41
>pdb|3JW6|A Chain A, Crystal Structure Of Acmnpv Baculovirus Polyhedra
Length = 245
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 21 KVYFIDHNTKKTTWIDPRDRYDTLEDPRLEWRAIQEAMLREYLTTAHHDSHNMIV 75
K +F +H ++ T +DP D Y EDP L Q+ L + + D+ ++V
Sbjct: 34 KKHFAEHEIEEAT-LDPLDNYLVAEDPFLGPGKNQKLTLFKEIRNVKPDTXKLVV 87
>pdb|2WUY|A Chain A, The Crystal Structure Of Wild-Type Baculovirus Polyhedra
Length = 245
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 21 KVYFIDHNTKKTTWIDPRDRYDTLEDPRLEWRAIQEAMLREYLTTAHHDSHNMIV 75
K +F +H ++ T +DP D Y EDP L Q+ L + + D+ ++V
Sbjct: 34 KKHFAEHEIEEAT-LDPLDNYLVAEDPFLGPGKNQKLTLFKEIRNVKPDTMKLVV 87
>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 5 EIPLPEGWDFAQD-YDGKVYFIDHNTKKTTWIDP 37
E LP GW+ G+VY+ +H T + W P
Sbjct: 4 EEKLPPGWEKRMSRSSGRVYYANHITNASQWERP 37
>pdb|2LB3|A Chain A, Structure Of The Ww Domain Of Pin1 In Complex With A
Human Phosphorylated Smad3 Derived Peptide
Length = 36
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 8 LPEGWDFAQD-YDGKVYFIDHNTKKTTWIDP 37
LP GW+ G+VY+ +H T + W P
Sbjct: 2 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 32
>pdb|1I6C|A Chain A, Solution Structure Of Pin1 Ww Domain
pdb|1I8G|B Chain B, Solution Structure Of Pin1 Ww Domain Complexed With
Cdc25 Phosphothreonine Peptide
pdb|1I8H|B Chain B, Solution Structure Of Pin1 Ww Domain Complexed With
Human Tau Phosphothreonine Peptide
Length = 39
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 8 LPEGWDFAQD-YDGKVYFIDHNTKKTTWIDP 37
LP GW+ G+VY+ +H T + W P
Sbjct: 2 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 32
>pdb|2WUX|A Chain A, The Crystal Structure Of Recombinant Baculovirus
Polyhedra
Length = 245
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 21 KVYFIDHNTKKTTWIDPRDRYDTLEDPRLEWRAIQEAMLREYLTTAHHDSHNMIV 75
K +F +H ++ T +DP D Y EDP L Q+ L + + D+ ++V
Sbjct: 34 KKHFAEHEIEEAT-LDPLDNYLVAEDPFLGPGKNQKLTLFKEIRNVKPDTMKLVV 87
>pdb|2KCF|A Chain A, The Nmr Solution Structure Of The Isolated Apo Pin1 Ww
Domain
Length = 36
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 8 LPEGWDFAQD-YDGKVYFIDHNTKKTTWIDP 37
LP GW+ G+VY+ +H T + W P
Sbjct: 4 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 34
>pdb|2L5F|A Chain A, Solution Structure Of The Tandem Ww Domains From
HypaFBP11
Length = 92
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 19 DGKVYFIDHNTKKTTWIDPRD 39
DG+ Y+ + TK++TW P D
Sbjct: 23 DGRTYYYNTETKQSTWEKPDD 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,832,327
Number of Sequences: 62578
Number of extensions: 104128
Number of successful extensions: 358
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 87
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)