Query psy14127
Match_columns 76
No_of_seqs 110 out of 721
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 20:14:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysf_A E3 ubiquitin-protein li 99.6 9E-16 3.1E-20 80.3 5.6 39 2-40 2-40 (40)
2 2ez5_W Dnedd4, E3 ubiquitin-pr 99.6 1.2E-15 4E-20 82.2 5.8 40 3-42 6-45 (46)
3 1tk7_A CG4244-PB; WW domain, n 99.6 6.1E-17 2.1E-21 97.1 0.6 65 4-68 9-78 (88)
4 2ysg_A Syntaxin-binding protei 99.6 1.2E-15 4E-20 79.9 5.3 38 2-39 2-39 (40)
5 2kxq_A E3 ubiquitin-protein li 99.6 8.9E-17 3E-21 96.8 1.0 66 3-68 5-77 (90)
6 2ysd_A Membrane-associated gua 99.6 1.7E-15 5.9E-20 84.9 6.2 42 4-45 11-52 (57)
7 2law_A Yorkie homolog; YAP, SM 99.6 1E-15 3.6E-20 79.3 4.4 36 4-39 3-38 (38)
8 2jmf_A E3 ubiquitin-protein li 99.6 2.1E-15 7.3E-20 83.4 5.5 38 4-41 15-52 (53)
9 1wmv_A WWOX, WW domain contain 99.6 3.2E-15 1.1E-19 82.9 6.2 42 4-45 8-49 (54)
10 2djy_A SMAD ubiquitination reg 99.6 2.9E-15 9.9E-20 79.3 5.5 37 4-40 4-40 (42)
11 1i5h_W Rnedd4, ubiquitin ligas 99.6 4.2E-15 1.4E-19 81.2 6.0 41 4-44 8-48 (50)
12 2l4j_A YES-associated protein 99.6 4E-15 1.4E-19 80.0 5.7 39 3-41 7-45 (46)
13 2zaj_A Membrane-associated gua 99.6 4.1E-15 1.4E-19 81.1 5.1 38 3-40 9-46 (49)
14 2kpz_A E3 ubiquitin-protein li 99.6 3.9E-15 1.3E-19 80.9 4.9 40 3-42 8-47 (49)
15 2ysb_A Salvador homolog 1 prot 99.6 7.5E-15 2.6E-19 80.0 5.9 39 4-42 8-46 (49)
16 1wr7_A NEDD4-2; all-beta, liga 99.5 5.6E-15 1.9E-19 77.6 4.4 36 4-39 5-40 (41)
17 1wr3_A Ubiquitin-protein ligas 99.5 1E-14 3.6E-19 74.4 5.0 35 5-39 2-36 (36)
18 1wr4_A Ubiquitin-protein ligas 99.5 2E-14 7E-19 73.1 5.2 35 5-39 2-36 (36)
19 2kyk_A E3 ubiquitin-protein li 99.5 2.1E-14 7.2E-19 74.5 5.2 35 5-39 4-38 (39)
20 2dmv_A Itchy homolog E3 ubiqui 99.5 2.8E-14 9.5E-19 75.6 5.3 39 2-40 2-40 (43)
21 2dwv_A Salvador homolog 1 prot 99.5 2.5E-14 8.4E-19 77.9 4.7 36 5-40 11-46 (49)
22 2yse_A Membrane-associated gua 99.5 2.3E-14 7.7E-19 81.1 3.7 38 3-40 9-46 (60)
23 1e0m_A Wwprototype; SH3 protot 99.5 1.3E-13 4.3E-18 70.5 5.2 35 6-40 2-36 (37)
24 1jmq_A YAP65, 65 kDa YES-assoc 99.4 1.1E-13 3.6E-18 74.1 3.8 40 3-42 4-43 (46)
25 2ysh_A GAS-7, growth-arrest-sp 99.4 2.9E-13 1E-17 70.4 5.4 38 2-39 2-39 (40)
26 3l4h_A E3 ubiquitin-protein li 99.4 2.9E-13 1E-17 84.4 5.8 38 4-41 69-106 (109)
27 1ymz_A CC45; artificial protei 99.4 5.4E-13 1.9E-17 70.4 5.2 37 4-40 5-41 (43)
28 2ho2_A Fe65 protein, amyloid b 99.4 6.6E-13 2.2E-17 68.9 4.8 34 6-40 2-35 (38)
29 2ysc_A Amyloid beta A4 precurs 99.3 2.1E-12 7.2E-17 67.3 4.5 35 3-38 4-38 (39)
30 3olm_A E3 ubiquitin-protein li 99.3 2.8E-12 9.7E-17 94.5 5.5 61 3-64 4-64 (429)
31 1tk7_A CG4244-PB; WW domain, n 99.3 3.9E-12 1.3E-16 76.0 4.6 35 5-39 54-88 (88)
32 2kxq_A E3 ubiquitin-protein li 99.3 6.5E-12 2.2E-16 75.3 5.2 35 6-40 54-88 (90)
33 2jv4_A Peptidyl-prolyl CIS/tra 99.2 1.8E-11 6.1E-16 67.7 5.4 37 4-40 4-41 (54)
34 2e45_A Fe65 protein, amyloid b 99.1 1.1E-10 3.6E-15 64.8 4.8 35 5-40 17-51 (55)
35 1eg3_A Dystrophin; EF-hand lik 99.1 3.8E-11 1.3E-15 83.9 3.3 35 6-40 10-44 (261)
36 3tc5_A Peptidyl-prolyl CIS-tra 99.0 1.7E-10 5.9E-15 75.7 4.4 37 4-40 6-43 (166)
37 2l5f_A PRE-mRNA-processing fac 99.0 7.2E-12 2.5E-16 75.4 -2.4 64 5-68 9-74 (92)
38 1o6w_A PRP40, PRE-mRNA process 99.0 6.1E-12 2.1E-16 72.8 -4.6 59 10-68 2-62 (75)
39 1o6w_A PRP40, PRE-mRNA process 98.9 5.7E-10 1.9E-14 64.4 3.3 34 7-40 40-73 (75)
40 2jx8_A Hpcif1, phosphorylated 98.8 1.1E-09 3.9E-14 59.9 2.4 34 7-40 10-44 (52)
41 2jxw_A WW domain-binding prote 98.7 1.4E-09 4.6E-14 63.1 0.1 58 10-67 5-64 (75)
42 2ysi_A Transcription elongatio 98.5 2.2E-07 7.6E-12 48.1 5.3 36 3-38 3-38 (40)
43 2l5f_A PRE-mRNA-processing fac 98.5 1.1E-07 3.7E-12 57.0 3.1 33 8-40 53-85 (92)
44 2jxw_A WW domain-binding prote 98.4 3.9E-07 1.3E-11 52.6 4.3 32 7-38 43-74 (75)
45 1ywi_A Formin-binding protein 98.4 4.3E-07 1.5E-11 47.2 3.6 34 5-38 7-40 (41)
46 1e0l_A Formin binding protein; 98.2 2.2E-06 7.5E-11 43.5 4.6 32 8-39 4-35 (37)
47 1e0n_A Hypothetical protein; Y 98.2 2.1E-06 7.3E-11 41.0 3.6 27 10-37 1-27 (27)
48 1yw5_A Peptidyl prolyl CIS/tra 97.7 5E-05 1.7E-09 49.6 5.0 36 4-39 4-40 (177)
49 2dwv_A Salvador homolog 1 prot 97.5 1.5E-06 5.1E-11 46.8 -3.5 35 30-68 1-35 (49)
50 3l4h_A E3 ubiquitin-protein li 97.5 1.3E-07 4.6E-12 58.7 -9.5 48 8-67 46-93 (109)
51 2dk1_A WW domain-binding prote 96.9 0.00094 3.2E-08 35.9 3.2 30 11-40 8-37 (50)
52 2dk7_A Transcription elongatio 96.7 0.0016 5.5E-08 37.6 3.4 30 11-40 21-50 (73)
53 3le4_A Microprocessor complex 96.3 0.011 3.8E-07 34.3 5.1 37 4-40 25-61 (79)
54 1d9n_A Methyl-CPG-binding prot 78.1 2.9 9.8E-05 23.8 3.5 24 5-28 8-39 (75)
55 3c2i_A Methyl-CPG-binding prot 76.0 3.1 0.0001 24.9 3.4 24 5-28 21-52 (97)
56 2ky8_A Methyl-CPG-binding doma 69.8 4.3 0.00015 22.8 2.8 23 5-27 10-40 (72)
57 3vxv_A Methyl-CPG-binding doma 66.0 5.4 0.00019 22.2 2.7 23 5-27 3-33 (69)
58 1ub1_A MECP2, attachment regio 65.3 7.6 0.00026 24.4 3.6 24 5-28 35-66 (133)
59 3nqb_A Adenine deaminase 2; PS 32.3 10 0.00035 28.5 0.1 13 64-76 476-488 (608)
No 1
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=99.62 E-value=9e-16 Score=80.35 Aligned_cols=39 Identities=49% Similarity=0.953 Sum_probs=35.7
Q ss_pred CCCCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCC
Q psy14127 2 RNGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDR 40 (76)
Q Consensus 2 ~~~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~ 40 (76)
++...+||+|||++++++|++||+||+|++|+|+||+..
T Consensus 2 ~~~~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr~~ 40 (40)
T 2ysf_A 2 SSGSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRTG 40 (40)
T ss_dssp CCCCCCCCSSEEEEECTTCCEEEEETTTCCEESSCTTTC
T ss_pred CCCcCCCCcCcEEEEcCCCCEEEEECCCCcEecCCCCCC
Confidence 356788999999999999999999999999999999863
No 2
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=99.61 E-value=1.2e-15 Score=82.16 Aligned_cols=40 Identities=43% Similarity=0.946 Sum_probs=36.6
Q ss_pred CCCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCCCC
Q psy14127 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYD 42 (76)
Q Consensus 3 ~~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~~~ 42 (76)
..+.+||+|||++++++|++||+||+|++|+|+||+..++
T Consensus 6 ~~~~~LP~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr~~~~ 45 (46)
T 2ez5_W 6 GEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNGRA 45 (46)
T ss_dssp CCSCCCCTTEEEEECTTSSEEEEETTTTEEESBCTTTCCB
T ss_pred CCCCCCCcCcEEEEcCCCCEEEEECCCCCEeccCCCCCCC
Confidence 4567899999999999999999999999999999998753
No 3
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=99.61 E-value=6.1e-17 Score=97.12 Aligned_cols=65 Identities=26% Similarity=0.549 Sum_probs=56.0
Q ss_pred CCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCCCCC-----cCCCchhhHHHHHHhhhhhhccccc
Q psy14127 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDT-----LEDPRLEWRAIQEAMLREYLTTAHH 68 (76)
Q Consensus 4 ~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~~~~-----~~~~~~~w~~~~~~~~~~~~~~~~~ 68 (76)
...+||+|||++++++|++||+||.|++++|++|+..... ...++.||+...+..++.||++...
T Consensus 9 ~~~~LP~gWe~~~~~~Gr~Yy~n~~t~~t~W~~P~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~nh~t 78 (88)
T 1tk7_A 9 ALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNT 78 (88)
T ss_dssp TTSSSSSSCCEEEETTTEEEEEETTTTEEEEESCCCTTTCCHHHHSCSSCSSCEEEEETTTEEEEEETTT
T ss_pred ccCCCCCCcEEEECCCCCEEEEECCCCCeEeecccccccccccccccccCCceEEEECCCCCEEEEECCC
Confidence 3567999999999999999999999999999999986432 3568899999988899999997643
No 4
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=99.61 E-value=1.2e-15 Score=79.87 Aligned_cols=38 Identities=45% Similarity=0.813 Sum_probs=35.2
Q ss_pred CCCCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCC
Q psy14127 2 RNGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39 (76)
Q Consensus 2 ~~~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~ 39 (76)
+.+..+||+|||++++++|++||+||+|++|+|+||++
T Consensus 2 ~~~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~~ 39 (40)
T 2ysg_A 2 SSGSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPVM 39 (40)
T ss_dssp CCSSSCCCTTEEEEECSSSCEEEEESSSCCEECCCCCC
T ss_pred CCCcCCCCCCcEEEEcCCCCEEEEECCCCcCcCCCCCC
Confidence 35677899999999999999999999999999999986
No 5
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=99.61 E-value=8.9e-17 Score=96.75 Aligned_cols=66 Identities=30% Similarity=0.521 Sum_probs=56.3
Q ss_pred CCCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCCCC-------CcCCCchhhHHHHHHhhhhhhccccc
Q psy14127 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYD-------TLEDPRLEWRAIQEAMLREYLTTAHH 68 (76)
Q Consensus 3 ~~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~~~-------~~~~~~~~w~~~~~~~~~~~~~~~~~ 68 (76)
.+..+||+|||++++++|++||+||.|++|+|++|+.... ....++.+|+...+..++.||++-..
T Consensus 5 ~~~~~LP~gWe~~~~~~Gr~YY~n~~t~~t~W~~P~~~~~~~~~~~~~~~~LP~gWe~~~~~~G~~Yy~n~~t 77 (90)
T 2kxq_A 5 GSPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNTATGRVYFVDHNN 77 (90)
T ss_dssp SSCCSCCSSCEEEEETTTEEEEEETTTTEEESSCSSSCSSSCSCCGGGTCCCCSSCCEEECTTSCEEEEETTT
T ss_pred CCCCCCCCCcEEEECCCCCEEEEECCCCeEeeecccccccccccCcccccccCCCceEEECCCCCEEEEECCC
Confidence 3467899999999999999999999999999999987532 23568999999988999999997543
No 6
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=99.60 E-value=1.7e-15 Score=84.89 Aligned_cols=42 Identities=50% Similarity=0.917 Sum_probs=37.2
Q ss_pred CCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCCCCCcC
Q psy14127 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLE 45 (76)
Q Consensus 4 ~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~~~~~~ 45 (76)
...+||+|||++++.+|++|||||+|++|+|+|||.....-.
T Consensus 11 ~~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr~~~~~~~ 52 (57)
T 2ysd_A 11 NLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNKQQS 52 (57)
T ss_dssp CCCSCCSSEEEEECSSCCEEEEETTTTEEESSCTTTCSSCCC
T ss_pred CCCCCCcCcEEEECCCCCEEEEECCCCcEecCCCCCccccCC
Confidence 356799999999999999999999999999999998766433
No 7
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=99.60 E-value=1e-15 Score=79.27 Aligned_cols=36 Identities=50% Similarity=1.086 Sum_probs=32.6
Q ss_pred CCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCC
Q psy14127 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39 (76)
Q Consensus 4 ~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~ 39 (76)
...+||+|||++++++|++||+||+|++|+|+|||+
T Consensus 3 ~~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttW~~Prl 38 (38)
T 2law_A 3 MEGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPRL 38 (38)
T ss_dssp --CCCSSSCCEEEETTTEEEEEETTTTEEESSCTTC
T ss_pred ccCCCCCCcEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 457899999999999999999999999999999985
No 8
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=99.59 E-value=2.1e-15 Score=83.37 Aligned_cols=38 Identities=45% Similarity=0.879 Sum_probs=35.2
Q ss_pred CCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCCC
Q psy14127 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRY 41 (76)
Q Consensus 4 ~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~~ 41 (76)
+..+||+|||++++.+|++|||||+|++|+|+||+..+
T Consensus 15 ~~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~~~ 52 (53)
T 2jmf_A 15 NEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPGA 52 (53)
T ss_dssp SCSCCCTTEEEEECTTSCEEEEETTTCCEESSCCCSSC
T ss_pred cCCCCCcCcEEEEcCCCCEEEEeCCCCcEecCCCCCCC
Confidence 45689999999999999999999999999999999865
No 9
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=99.59 E-value=3.2e-15 Score=82.92 Aligned_cols=42 Identities=38% Similarity=0.751 Sum_probs=37.8
Q ss_pred CCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCCCCCcC
Q psy14127 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLE 45 (76)
Q Consensus 4 ~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~~~~~~ 45 (76)
...+||+|||++++++|++|||||++++|+|+||+..+...+
T Consensus 8 ~~~~LP~GWe~~~~~~G~~Yyinh~tk~TtwedPr~~~~~~~ 49 (54)
T 1wmv_A 8 VAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDD 49 (54)
T ss_dssp CSSCSCTTEEEEECTTSCEEEEESSSCCEESSCTTSSCCCCC
T ss_pred cCCCCCcCcEEEECCCCCEEEEeCCCCCEeecCCCCcccccc
Confidence 356899999999999999999999999999999999876544
No 10
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=99.58 E-value=2.9e-15 Score=79.25 Aligned_cols=37 Identities=46% Similarity=0.991 Sum_probs=34.5
Q ss_pred CCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCC
Q psy14127 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDR 40 (76)
Q Consensus 4 ~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~ 40 (76)
+..+||+|||++++++|++|||||+|++|+|+||+..
T Consensus 4 ~~~~LP~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~~ 40 (42)
T 2djy_A 4 GSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS 40 (42)
T ss_dssp CCSCCCSSEEEEECSSSCEEEEETTTTEEESSCTTTS
T ss_pred CcCCCCcCcEEEECCCCCEEEEECCCCCEeCCCCCCC
Confidence 4568999999999999999999999999999999975
No 11
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=99.58 E-value=4.2e-15 Score=81.23 Aligned_cols=41 Identities=46% Similarity=0.885 Sum_probs=37.1
Q ss_pred CCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCCCCCc
Q psy14127 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTL 44 (76)
Q Consensus 4 ~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~~~~~ 44 (76)
+..+||+|||++++.+|++||+||+|++|+|+||+...+++
T Consensus 8 ~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~~~~~~ 48 (50)
T 1i5h_W 8 DLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQNVAI 48 (50)
T ss_dssp CCSSCSTTEEEEECTTSCEEEEETTTTEEESSCTTTSCCCC
T ss_pred cCCCCCcCcEEEEcCCCCEEEEECCCCCEEeeCCCCCcccc
Confidence 45689999999999999999999999999999999876654
No 12
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=99.58 E-value=4e-15 Score=80.05 Aligned_cols=39 Identities=44% Similarity=0.958 Sum_probs=35.6
Q ss_pred CCCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCCC
Q psy14127 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRY 41 (76)
Q Consensus 3 ~~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~~ 41 (76)
+...+||+|||++++++|++||+||++++|+|+||+...
T Consensus 7 ~~~~~LP~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr~~~ 45 (46)
T 2l4j_A 7 PASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRLET 45 (46)
T ss_dssp TTTSCCCTTCEEEECTTSCEEEEETTTTEEECSCCSSCC
T ss_pred CcCCCCCcCceeEECCCCCEEEEECCCCCEeCCCCCcCC
Confidence 456789999999999999999999999999999999763
No 13
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=99.56 E-value=4.1e-15 Score=81.09 Aligned_cols=38 Identities=32% Similarity=0.710 Sum_probs=35.2
Q ss_pred CCCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCC
Q psy14127 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDR 40 (76)
Q Consensus 3 ~~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~ 40 (76)
+...+||+|||++++.+|++|||||.|++|+|++|+..
T Consensus 9 ~~~~~LP~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~~ 46 (49)
T 2zaj_A 9 DSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPSGP 46 (49)
T ss_dssp CCSSCCCTTEEEEEETTTEEEEEETTTTEEESSCCCSS
T ss_pred CCCCCCCcCceEEEcCCCCEEEEeCCCCCEecCCCCCC
Confidence 45678999999999999999999999999999999975
No 14
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=99.56 E-value=3.9e-15 Score=80.93 Aligned_cols=40 Identities=45% Similarity=0.836 Sum_probs=33.2
Q ss_pred CCCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCCCC
Q psy14127 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYD 42 (76)
Q Consensus 3 ~~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~~~ 42 (76)
....+||+|||++++++|++||+||+|++|+|+||+..++
T Consensus 8 ~~~~~LP~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~~~p 47 (49)
T 2kpz_A 8 IEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKIP 47 (49)
T ss_dssp ----CCCTTEEEEECTTSCEEEEETTTTEEESSCTTCC--
T ss_pred ccCCCCCCCcEEEECCCCCEEEEECCCCCEecCCCCCCCC
Confidence 3467899999999999999999999999999999998753
No 15
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=99.56 E-value=7.5e-15 Score=79.99 Aligned_cols=39 Identities=38% Similarity=0.871 Sum_probs=35.7
Q ss_pred CCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCCCC
Q psy14127 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYD 42 (76)
Q Consensus 4 ~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~~~ 42 (76)
...+||+|||++++++|++||+||+|++|+|+||+...+
T Consensus 8 ~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~~~p 46 (49)
T 2ysb_A 8 EDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLESGP 46 (49)
T ss_dssp CCCCCCTTEEEEECSSSCEEEEETTTTEEESSCTTTSCC
T ss_pred CCCCCCCCceEEECCCCCEEEEEcCCCCEEecCCCCCCC
Confidence 456899999999999999999999999999999998644
No 16
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=99.55 E-value=5.6e-15 Score=77.57 Aligned_cols=36 Identities=50% Similarity=0.902 Sum_probs=33.8
Q ss_pred CCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCC
Q psy14127 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39 (76)
Q Consensus 4 ~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~ 39 (76)
...+||+|||++++++|++||+||+|++|+|++|+.
T Consensus 5 ~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr~ 40 (41)
T 1wr7_A 5 IQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRL 40 (41)
T ss_dssp CCCSSCTTEEEEECTTSCEEEEETTTTEEESSCGGG
T ss_pred ccCCCCCCcEEEEcCCCCEEEEECCCCCeecCCCCC
Confidence 467899999999999999999999999999999985
No 17
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=99.54 E-value=1e-14 Score=74.40 Aligned_cols=35 Identities=37% Similarity=0.871 Sum_probs=32.8
Q ss_pred CCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCC
Q psy14127 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39 (76)
Q Consensus 5 ~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~ 39 (76)
..+||+||+++.+++|++||+||.|++|+|++|++
T Consensus 2 ~~~LP~GWe~~~d~~G~~Yy~n~~t~~t~We~P~l 36 (36)
T 1wr3_A 2 SPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPSL 36 (36)
T ss_dssp CSCSCTTEEEEECSSSCEEEEETTTCCEESSCSCC
T ss_pred CCCCCCCCEEEECCCCCEEEEECCCCCEeeeCcCC
Confidence 46899999999999999999999999999999974
No 18
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=99.52 E-value=2e-14 Score=73.05 Aligned_cols=35 Identities=37% Similarity=0.880 Sum_probs=32.8
Q ss_pred CCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCC
Q psy14127 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39 (76)
Q Consensus 5 ~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~ 39 (76)
..+||+||+++.+++|++||+||+|++|+|++|++
T Consensus 2 ~~~LP~gWe~~~d~~g~~Yy~n~~t~~t~W~~P~~ 36 (36)
T 1wr4_A 2 SPGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPIM 36 (36)
T ss_dssp CTTCCTTEEEEECSSSCEEEEETTTTEEESSCCCC
T ss_pred CCCCCCCCEEEECCCCCEEEEECCCCCEeCcCCCC
Confidence 56899999999999999999999999999999974
No 19
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=99.52 E-value=2.1e-14 Score=74.53 Aligned_cols=35 Identities=43% Similarity=0.880 Sum_probs=33.1
Q ss_pred CCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCC
Q psy14127 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39 (76)
Q Consensus 5 ~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~ 39 (76)
..+||+||+++++++|++||+||+|++|+|++|+.
T Consensus 4 ~~~LP~gWe~~~d~~G~~YY~n~~t~~t~We~P~~ 38 (39)
T 2kyk_A 4 MGPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTL 38 (39)
T ss_dssp SCCCCSSCEEEECTTSCEEEECSSSCCEECCCCCC
T ss_pred cCCCCCCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence 56899999999999999999999999999999985
No 20
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.8e-14 Score=75.57 Aligned_cols=39 Identities=41% Similarity=0.872 Sum_probs=35.7
Q ss_pred CCCCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCC
Q psy14127 2 RNGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDR 40 (76)
Q Consensus 2 ~~~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~ 40 (76)
+....+||+||+++++++|++||+||.|++|+|++|+..
T Consensus 2 ~~~~~~LP~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~~ 40 (43)
T 2dmv_A 2 SSGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGP 40 (43)
T ss_dssp CSSCCSCCTTEEEEECTTSCEEEEETTTCCEESSCSSSC
T ss_pred CCCCCCCCCCceEEECCCCCEEEEECCCCCEecCCcCCC
Confidence 345788999999999999999999999999999999874
No 21
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.50 E-value=2.5e-14 Score=77.93 Aligned_cols=36 Identities=25% Similarity=0.623 Sum_probs=33.7
Q ss_pred CCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCC
Q psy14127 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDR 40 (76)
Q Consensus 5 ~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~ 40 (76)
..+||+|||++++++|++|||||+|++|+|++|+..
T Consensus 11 ~~~LP~GWe~~~d~~g~~YYvnh~t~~T~We~P~~~ 46 (49)
T 2dwv_A 11 REGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGP 46 (49)
T ss_dssp SSCCCTTEEEEEETTTEEEEEETTTTEEESSCCCCC
T ss_pred CCCCCcCcEEEECCCCCEEEEECCCCCEeccCcCCC
Confidence 357999999999999999999999999999999875
No 22
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.3e-14 Score=81.10 Aligned_cols=38 Identities=32% Similarity=0.670 Sum_probs=34.8
Q ss_pred CCCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCC
Q psy14127 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDR 40 (76)
Q Consensus 3 ~~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~ 40 (76)
+...+||+|||++++..|++|||||+|++|+|++|+..
T Consensus 9 d~~~~LP~GWE~~~d~~Gr~YYvnh~tk~T~We~P~~~ 46 (60)
T 2yse_A 9 DSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLE 46 (60)
T ss_dssp CCCSSCCSSEEEEECSSSCEEEEETTTTEEESSCHHHH
T ss_pred CCCCCCCCCcEEEECCCCCEEEEeCCCCCeeccCCCch
Confidence 45678999999999999999999999999999999764
No 23
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=99.46 E-value=1.3e-13 Score=70.52 Aligned_cols=35 Identities=49% Similarity=0.991 Sum_probs=32.8
Q ss_pred CCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCC
Q psy14127 6 IPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDR 40 (76)
Q Consensus 6 ~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~ 40 (76)
.+||+||++..+++|++||+||.|+.++|++|+..
T Consensus 2 ~~LP~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~~~ 36 (37)
T 1e0m_A 2 MGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRMS 36 (37)
T ss_dssp CCSCTTEEEEECSSCCEEEEETTTTEEESSCTTTC
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCCeeeeCcCCC
Confidence 57999999999999999999999999999999864
No 24
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=99.43 E-value=1.1e-13 Score=74.08 Aligned_cols=40 Identities=40% Similarity=0.896 Sum_probs=36.5
Q ss_pred CCCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCCCC
Q psy14127 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYD 42 (76)
Q Consensus 3 ~~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~~~ 42 (76)
+...+||+||+.+.+++|+.||+||++++|+|+|||..+.
T Consensus 4 P~~~~LP~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~~~~ 43 (46)
T 1jmq_A 4 PDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAML 43 (46)
T ss_dssp CSSCCCCTTBCCBCCSSCCCBEEETTTTEEESSCTTTSSS
T ss_pred CCCCCCCcCcEEEEcCCCceEEEEecCCceeecCCCchhh
Confidence 4567899999999999999999999999999999998753
No 25
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=99.43 E-value=2.9e-13 Score=70.37 Aligned_cols=38 Identities=32% Similarity=0.727 Sum_probs=35.0
Q ss_pred CCCCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCC
Q psy14127 2 RNGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39 (76)
Q Consensus 2 ~~~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~ 39 (76)
+....+||+||++.++++|++||+||.|+.++|++|+.
T Consensus 2 s~~~~~LP~gW~~~~d~~Gr~YY~n~~T~~t~We~P~~ 39 (40)
T 2ysh_A 2 SSGSSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPSS 39 (40)
T ss_dssp CCCCSSCCTTCEEEECTTSCEEEECSSSCCEESSSCCC
T ss_pred CCCCCCCCCCceEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 45678899999999999999999999999999999975
No 26
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=99.42 E-value=2.9e-13 Score=84.36 Aligned_cols=38 Identities=45% Similarity=0.954 Sum_probs=35.4
Q ss_pred CCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCCC
Q psy14127 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRY 41 (76)
Q Consensus 4 ~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~~ 41 (76)
...+||+|||++++++|++|||||++++|+|+|||++.
T Consensus 69 ~~~pLP~GWE~r~d~~Gr~YfIdH~tktTtW~dPRl~~ 106 (109)
T 3l4h_A 69 TRLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIPL 106 (109)
T ss_dssp TTSCCCTTEEEEECTTCCEEEEETTTTEEESSCSCCSC
T ss_pred CCCCCCCCCeEEECCCCCEEEEeCCCCCEeeCCCCccc
Confidence 35689999999999999999999999999999999874
No 27
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=99.40 E-value=5.4e-13 Score=70.37 Aligned_cols=37 Identities=41% Similarity=0.828 Sum_probs=33.1
Q ss_pred CCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCC
Q psy14127 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDR 40 (76)
Q Consensus 4 ~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~ 40 (76)
...+||+||+.+++++|++||+||.|+.|+|++|+..
T Consensus 5 ~~~~LP~gW~~~~~~~Gr~YY~n~~T~~t~We~P~~~ 41 (43)
T 1ymz_A 5 RSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTII 41 (43)
T ss_dssp --CCCCSSEEEEECTTSCEEEEETTTTEEESSCCCSC
T ss_pred cCCCCCCCCEEEECCCCCEEEEECCCCCCcccCCccc
Confidence 3568999999999999999999999999999999864
No 28
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=99.38 E-value=6.6e-13 Score=68.90 Aligned_cols=34 Identities=35% Similarity=0.641 Sum_probs=31.2
Q ss_pred CCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCC
Q psy14127 6 IPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDR 40 (76)
Q Consensus 6 ~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~ 40 (76)
.+||+|||++.+..| +||+||.|++|+|++|+..
T Consensus 2 ~~LP~GWe~~~d~~g-~YY~n~~t~~tqWe~P~~~ 35 (38)
T 2ho2_A 2 SDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGRA 35 (38)
T ss_dssp CCSCTTEEEEECSSC-EEEEETTTTEEESSCCCC-
T ss_pred CcCCCCceEEEeCCC-CEEEecCCCCEeccCCCCC
Confidence 479999999999999 9999999999999999875
No 29
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=99.32 E-value=2.1e-12 Score=67.29 Aligned_cols=35 Identities=29% Similarity=0.604 Sum_probs=31.9
Q ss_pred CCCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCC
Q psy14127 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38 (76)
Q Consensus 3 ~~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr 38 (76)
+...+||+|||++.+.+| .||+||.|++|+|++|+
T Consensus 4 ~~~~~LP~GWe~~~~~~G-~YY~n~~t~~tqWe~P~ 38 (39)
T 2ysc_A 4 GSSGGLPPGWRKIHDAAG-TYYWHVPSGSTQWQRPT 38 (39)
T ss_dssp CCCCCCCTTEEEEEETTE-EEEEESSSCCEESSCCC
T ss_pred CCCCCCCCCcEEEEcCCC-CEEEEcCCCCEeccCCC
Confidence 457789999999999999 59999999999999996
No 30
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=99.29 E-value=2.8e-12 Score=94.47 Aligned_cols=61 Identities=33% Similarity=0.590 Sum_probs=50.8
Q ss_pred CCCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCCCCCcCCCchhhHHHHHHhhhhhhc
Q psy14127 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDPRLEWRAIQEAMLREYLT 64 (76)
Q Consensus 3 ~~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~~~~~~~~~~~w~~~~~~~~~~~~~ 64 (76)
+...+||+|||.+++++|++|||||+|++|+|.|||.... ++...++|++...+...-+..
T Consensus 4 ~~~~~lP~gWe~~~~~~g~~y~i~h~~~~t~w~~Pr~~~~-~~~~~~~y~~~~~~k~~~f~~ 64 (429)
T 3olm_A 4 SQLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSS-LDQNVPQYKRDFRRKVIYFRS 64 (429)
T ss_dssp -CCCCCCTTCCCCCSSCCCCCEEETTTTEEESSCTTSCCC-CCSSCCHHHHHHHHHHHHHHS
T ss_pred ccCCCCCCCceeEECCCCCeEEEeCCCcceeccCCCCCcc-cccCcccccccchHHHHHHHH
Confidence 3457899999999999999999999999999999999754 455667799888887765544
No 31
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=99.28 E-value=3.9e-12 Score=76.00 Aligned_cols=35 Identities=49% Similarity=0.981 Sum_probs=32.9
Q ss_pred CCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCC
Q psy14127 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39 (76)
Q Consensus 5 ~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~ 39 (76)
..+||.||+++++++|++||+||+|++|+|++||+
T Consensus 54 ~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Prl 88 (88)
T 1tk7_A 54 EGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRP 88 (88)
T ss_dssp SCSSCSSCEEEEETTTEEEEEETTTTEEESSSSCC
T ss_pred ccccCCceEEEECCCCCEEEEECCCCcEeCCCCCC
Confidence 46799999999999999999999999999999985
No 32
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=99.26 E-value=6.5e-12 Score=75.31 Aligned_cols=35 Identities=46% Similarity=0.983 Sum_probs=33.3
Q ss_pred CCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCC
Q psy14127 6 IPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDR 40 (76)
Q Consensus 6 ~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~ 40 (76)
.+||.|||++++.+|++||+||+|++|+|++|++.
T Consensus 54 ~~LP~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~~ 88 (90)
T 2kxq_A 54 GPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS 88 (90)
T ss_dssp CCCCSSCCEEECTTSCEEEEETTTTEEESSCTTTS
T ss_pred cccCCCceEEECCCCCEEEEECCCCcEecCCCCcC
Confidence 57999999999999999999999999999999975
No 33
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=99.23 E-value=1.8e-11 Score=67.73 Aligned_cols=37 Identities=24% Similarity=0.649 Sum_probs=33.3
Q ss_pred CCCCCCcCceEEEcC-CCcEEEeeCCCCeeeccCCCCC
Q psy14127 4 GEIPLPEGWDFAQDY-DGKVYFIDHNTKKTTWIDPRDR 40 (76)
Q Consensus 4 ~~~~LP~GWe~~~~~-~g~~yyvnh~tk~t~w~dPr~~ 40 (76)
...+||+||+.+.+. .|++||+|+.|+.++|++|...
T Consensus 4 ~~~~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~ 41 (54)
T 2jv4_A 4 VNTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADT 41 (54)
T ss_dssp CCCCCCSSCCEEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred CCCCCCCCcEEEEECCCCCEEEEECCCCcEEecCCCCc
Confidence 457899999999986 8999999999999999999764
No 34
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=99.11 E-value=1.1e-10 Score=64.81 Aligned_cols=35 Identities=34% Similarity=0.648 Sum_probs=32.2
Q ss_pred CCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCC
Q psy14127 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDR 40 (76)
Q Consensus 5 ~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~ 40 (76)
..+||+||+++.|++| .||+||.|++|+|+.|...
T Consensus 17 ~~~LPpGW~~~~D~sG-tYY~h~~T~tTQWerP~~~ 51 (55)
T 2e45_A 17 DSDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGRA 51 (55)
T ss_dssp CSCCCTTEEEEEETTE-EEEEETTTCCEESSCCCCC
T ss_pred CCCCCCCCeEeecCCC-CEEEEcCCCCCccCCCCCC
Confidence 5579999999999999 9999999999999999654
No 35
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=99.10 E-value=3.8e-11 Score=83.95 Aligned_cols=35 Identities=26% Similarity=0.555 Sum_probs=33.3
Q ss_pred CCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCC
Q psy14127 6 IPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDR 40 (76)
Q Consensus 6 ~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~ 40 (76)
.+||+|||++++++|++|||||+|++|+|.||++.
T Consensus 10 ~~l~~~we~~~~~~~~~y~~~h~~~tt~w~~p~~~ 44 (261)
T 1eg3_A 10 TSVQGPWERAISPNKVPYYINHETQTTCWDHPKMT 44 (261)
T ss_dssp TTCCTTEEEEECTTSCEEEEETTTTEEESSCHHHH
T ss_pred CCCCCCcceeECCCCCeEeecCCcccccCCCCchh
Confidence 58999999999999999999999999999999964
No 36
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=99.04 E-value=1.7e-10 Score=75.71 Aligned_cols=37 Identities=35% Similarity=0.789 Sum_probs=29.2
Q ss_pred CCCCCCcCceEEEc-CCCcEEEeeCCCCeeeccCCCCC
Q psy14127 4 GEIPLPEGWDFAQD-YDGKVYFIDHNTKKTTWIDPRDR 40 (76)
Q Consensus 4 ~~~~LP~GWe~~~~-~~g~~yyvnh~tk~t~w~dPr~~ 40 (76)
+..+||+|||.+++ ..|++||+||.|++|+|++|+..
T Consensus 6 ~~~~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~ 43 (166)
T 3tc5_A 6 DEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGN 43 (166)
T ss_dssp ----CCTTEEEEECTTTCCEEEEETTTCCEESSCC---
T ss_pred CCCCCCCCceEEEcCCCCCEEEEECCCCCEEecCCCCC
Confidence 35689999999999 59999999999999999999864
No 37
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=99.03 E-value=7.2e-12 Score=75.44 Aligned_cols=64 Identities=19% Similarity=0.396 Sum_probs=51.6
Q ss_pred CCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCCCCCc--CCCchhhHHHHHHhhhhhhccccc
Q psy14127 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTL--EDPRLEWRAIQEAMLREYLTTAHH 68 (76)
Q Consensus 5 ~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~ 68 (76)
..+||.||+...+++|++||+|+.|+.++|+.|....... ..++.+|+......++.||.+...
T Consensus 9 ~~~lp~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~Yy~N~~T 74 (92)
T 2l5f_A 9 ASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKTYYYNSQT 74 (92)
T ss_dssp TTBTTTTEEEEECTTSCEEEEETTTTEEESSCSGGGTCHHHHHHHSCSEEEEECTTCCEEEEETTT
T ss_pred CCCCCCCcEEEEcCCCCEEEEECCCCceecccCccccccccccccccceEEEECCCCCEEEEECCC
Confidence 5579999999999999999999999999999998643211 124578988777789999987643
No 38
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=98.95 E-value=6.1e-12 Score=72.80 Aligned_cols=59 Identities=27% Similarity=0.493 Sum_probs=48.5
Q ss_pred cCceEEEcCCCcEEEeeCCCCeeeccCCCCCCCC--cCCCchhhHHHHHHhhhhhhccccc
Q psy14127 10 EGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDT--LEDPRLEWRAIQEAMLREYLTTAHH 68 (76)
Q Consensus 10 ~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~~~~--~~~~~~~w~~~~~~~~~~~~~~~~~ 68 (76)
+||+...+++|++||+||.|+.++|++|+..... ...++.+|+...+..++.||.+...
T Consensus 2 ~~W~~~~~~~Gr~YY~n~~T~~s~W~~P~~~~~~~~~~~lp~gW~~~~~~~Gr~Yy~n~~t 62 (75)
T 1o6w_A 2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTT 62 (75)
T ss_dssp CCEEEEECTTCCEEEEETTTTEEESSCCHHHHHHHHHHHHHHTCEEEECTTCCEEEEETTT
T ss_pred CCCeEEECCCCCeEEEECCCCCEEeecchhhcccccccCCCCeEEEEECCCCCEEEEECCC
Confidence 5899999999999999999999999999754211 1236789999888889999987653
No 39
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=98.93 E-value=5.7e-10 Score=64.39 Aligned_cols=34 Identities=35% Similarity=0.700 Sum_probs=31.7
Q ss_pred CCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCC
Q psy14127 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDR 40 (76)
Q Consensus 7 ~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~ 40 (76)
.||.||+...+.+|++||+||.|+.++|++|+..
T Consensus 40 ~lp~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~~~ 73 (75)
T 1o6w_A 40 LRENGWKAAKTADGKVYYYNPTTRETSWTIPAFE 73 (75)
T ss_dssp HHHHTCEEEECTTCCEEEEETTTTEEESSCCCCC
T ss_pred CCCCeEEEEECCCCCEEEEECCCCCEECCCCCCC
Confidence 3688999999999999999999999999999875
No 40
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=98.85 E-value=1.1e-09 Score=59.95 Aligned_cols=34 Identities=18% Similarity=0.460 Sum_probs=31.2
Q ss_pred CCCcCceEEEcC-CCcEEEeeCCCCeeeccCCCCC
Q psy14127 7 PLPEGWDFAQDY-DGKVYFIDHNTKKTTWIDPRDR 40 (76)
Q Consensus 7 ~LP~GWe~~~~~-~g~~yyvnh~tk~t~w~dPr~~ 40 (76)
.||.||+++++. .|+.||+|+.|+.++|+.|+..
T Consensus 10 ~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~~ 44 (52)
T 2jx8_A 10 LVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLG 44 (52)
T ss_dssp HHHHTCCEEEETTTTEEEEEETTTTEEESSCCCCT
T ss_pred CCCcCcEEEEccccCCEEEEECCCCCEEeCCCCCC
Confidence 489999999984 8999999999999999999875
No 41
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=98.73 E-value=1.4e-09 Score=63.09 Aligned_cols=58 Identities=14% Similarity=0.201 Sum_probs=47.6
Q ss_pred cCceEEEcCCCcEEEeeCCCCeeeccCCCCCCCC--cCCCchhhHHHHHHhhhhhhcccc
Q psy14127 10 EGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDT--LEDPRLEWRAIQEAMLREYLTTAH 67 (76)
Q Consensus 10 ~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~~~~--~~~~~~~w~~~~~~~~~~~~~~~~ 67 (76)
.+|+...+++|++||+|+.|+.++|+.|+..... ...++.+|+...+..++.||.+..
T Consensus 5 ~~W~e~~~~~G~~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~YyyN~~ 64 (75)
T 2jxw_A 5 GRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTE 64 (75)
T ss_dssp CCEEEEEETTTEEEEEETTTTEEECSCCSSCSSCCSSSSCCCSEEEEEETTTEEEEEETT
T ss_pred CCcEEEECCCCCEEEEECCCCCEeecCCCcccccccccCCCccEEEEECCCCCEEEEECc
Confidence 5799999999999999999999999999864221 225678898887788999997654
No 42
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.54 E-value=2.2e-07 Score=48.14 Aligned_cols=36 Identities=31% Similarity=0.637 Sum_probs=32.6
Q ss_pred CCCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCC
Q psy14127 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38 (76)
Q Consensus 3 ~~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr 38 (76)
....++|.+|....+++|+.||.|..|+.++|+.|.
T Consensus 3 ~~~~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~ 38 (40)
T 2ysi_A 3 SGSSGTEEIWVENKTPDGKVYYYNARTRESAWTKPD 38 (40)
T ss_dssp SCCCCCCCSEEEEECTTSCEEEEETTTCCEESSCCS
T ss_pred cccCCCCCCCEEEECCCCCEEEEECCCCCEEeCCCC
Confidence 456678999999999999999999999999999996
No 43
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=98.45 E-value=1.1e-07 Score=56.98 Aligned_cols=33 Identities=24% Similarity=0.592 Sum_probs=30.3
Q ss_pred CCcCceEEEcCCCcEEEeeCCCCeeeccCCCCC
Q psy14127 8 LPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDR 40 (76)
Q Consensus 8 LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~ 40 (76)
||.+|+...+.+|++||+|+.|+.++|++|+..
T Consensus 53 ~~~~W~~~~~~~Gr~Yy~N~~T~~s~We~P~~~ 85 (92)
T 2l5f_A 53 SKCPWKEYKSDSGKTYYYNSQTKESRWAKPKEL 85 (92)
T ss_dssp HSCSEEEEECTTCCEEEEETTTTEEESCCCHHH
T ss_pred cccceEEEECCCCCEEEEECCCCCeeccCchhH
Confidence 578999999999999999999999999999753
No 44
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=98.38 E-value=3.9e-07 Score=52.59 Aligned_cols=32 Identities=22% Similarity=0.505 Sum_probs=30.2
Q ss_pred CCCcCceEEEcCCCcEEEeeCCCCeeeccCCC
Q psy14127 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38 (76)
Q Consensus 7 ~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr 38 (76)
.++.+|+...+.+|++||.|+.|+.++|++|.
T Consensus 43 ~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~ 74 (75)
T 2jxw_A 43 AVKTVWVEGLSEDGFTYYYNTETGESRWEKPD 74 (75)
T ss_dssp SCCCSEEEEEETTTEEEEEETTTTEEESSCCC
T ss_pred CCCccEEEEECCCCCEEEEECcCCCEeccCcC
Confidence 57899999999999999999999999999996
No 45
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=98.35 E-value=4.3e-07 Score=47.22 Aligned_cols=34 Identities=26% Similarity=0.557 Sum_probs=27.1
Q ss_pred CCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCC
Q psy14127 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38 (76)
Q Consensus 5 ~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr 38 (76)
...+|.+|+...+++|+.||.|..|+.++|+.|.
T Consensus 7 ~~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~ 40 (41)
T 1ywi_A 7 VGSAKSMWTEHKSPDGRTYYYNTETKQSTWEKPD 40 (41)
T ss_dssp -----CCEEEEEETTTEEEEEETTTTEEEESCC-
T ss_pred CCCCCCCcEEEECCCCCEEEEECCCCCEEeCCCC
Confidence 4567899999999999999999999999999985
No 46
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=98.24 E-value=2.2e-06 Score=43.52 Aligned_cols=32 Identities=28% Similarity=0.663 Sum_probs=29.1
Q ss_pred CCcCceEEEcCCCcEEEeeCCCCeeeccCCCC
Q psy14127 8 LPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39 (76)
Q Consensus 8 LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~ 39 (76)
...+|....+++|+.||.|..|+.++|+.|..
T Consensus 4 ~~~~W~e~~~~~G~~YYyN~~T~es~We~P~~ 35 (37)
T 1e0l_A 4 AVSEWTEYKTADGKTYYYNNRTLESTWEKPQE 35 (37)
T ss_dssp SSCSCEEEECTTSCEEEEETTTTEEESSCCSS
T ss_pred CCCCeEEEECCCCCEEEEECCCCCEEecCCCc
Confidence 45789999999999999999999999999964
No 47
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=98.18 E-value=2.1e-06 Score=41.03 Aligned_cols=27 Identities=19% Similarity=0.518 Sum_probs=23.6
Q ss_pred cCceEEEcCCCcEEEeeCCCCeeeccCC
Q psy14127 10 EGWDFAQDYDGKVYFIDHNTKKTTWIDP 37 (76)
Q Consensus 10 ~GWe~~~~~~g~~yyvnh~tk~t~w~dP 37 (76)
+||+ ....+|+.||.|..|+.++|+.|
T Consensus 1 ~gWe-~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 1 PGWE-IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CCEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred CCCe-EECCCCCeEEEECCCCCEeccCC
Confidence 5899 44579999999999999999877
No 48
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=97.72 E-value=5e-05 Score=49.58 Aligned_cols=36 Identities=25% Similarity=0.624 Sum_probs=31.5
Q ss_pred CCCCCCcCceEEEcC-CCcEEEeeCCCCeeeccCCCC
Q psy14127 4 GEIPLPEGWDFAQDY-DGKVYFIDHNTKKTTWIDPRD 39 (76)
Q Consensus 4 ~~~~LP~GWe~~~~~-~g~~yyvnh~tk~t~w~dPr~ 39 (76)
....||+||+.+.+. .|+.||.|..++..+|..|..
T Consensus 4 ~~~~lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~ 40 (177)
T 1yw5_A 4 TSTGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYG 40 (177)
T ss_dssp CCCCCCTTEEEEECSSTTCEEEEETTTCCEESSCCTT
T ss_pred ccCCCCchHHHHhcccCCchhhhhHHHhhHhhcCccc
Confidence 346799999999984 799999999999999988864
No 49
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.55 E-value=1.5e-06 Score=46.79 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=29.7
Q ss_pred CeeeccCCCCCCCCcCCCchhhHHHHHHhhhhhhccccc
Q psy14127 30 KKTTWIDPRDRYDTLEDPRLEWRAIQEAMLREYLTTAHH 68 (76)
Q Consensus 30 k~t~w~dPr~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 68 (76)
++|+|.||+.. ..+|.||++..+..++.||++-..
T Consensus 1 ~tt~W~~P~~~----~~LP~GWe~~~d~~g~~YYvnh~t 35 (49)
T 2dwv_A 1 GSSGSSGPLER----EGLPPGWERVESSEFGTYYVDHTN 35 (49)
T ss_dssp CCSSSCCSCCS----SCCCTTEEEEEETTTEEEEEETTT
T ss_pred CeecCcCCCCC----CCCCcCcEEEECCCCCEEEEECCC
Confidence 46899999985 568999999999999999997543
No 50
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=97.47 E-value=1.3e-07 Score=58.73 Aligned_cols=48 Identities=10% Similarity=0.142 Sum_probs=41.0
Q ss_pred CCcCceEEEcCCCcEEEeeCCCCeeeccCCCCCCCCcCCCchhhHHHHHHhhhhhhcccc
Q psy14127 8 LPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDPRLEWRAIQEAMLREYLTTAH 67 (76)
Q Consensus 8 LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 67 (76)
.|.|||++.++.|.+|||||++. + ...+|.|||...+..++.||++-.
T Consensus 46 ~p~~we~~~~~~~lV~~vn~~~d------~------~~pLP~GWE~r~d~~Gr~YfIdH~ 93 (109)
T 3l4h_A 46 DARNFERYQHNRDLVNFINMFAD------T------RLELPRGWEIKTDQQGKSFFVDHN 93 (109)
T ss_dssp CTHHHHHHTTCHHHHHHHHTTCC------T------TSCCCTTEEEEECTTCCEEEEETT
T ss_pred CCcChhhhcCcCCceEEeccCCC------C------CCCCCCCCeEEECCCCCEEEEeCC
Confidence 68999999999999999999963 2 234899999999999999998743
No 51
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=96.89 E-value=0.00094 Score=35.89 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=27.2
Q ss_pred CceEEEcCCCcEEEeeCCCCeeeccCCCCC
Q psy14127 11 GWDFAQDYDGKVYFIDHNTKKTTWIDPRDR 40 (76)
Q Consensus 11 GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~ 40 (76)
.|....+++|+.||.|..|+.++|+.|..-
T Consensus 8 ~W~e~~s~~G~~YYyN~~T~eS~WekP~~~ 37 (50)
T 2dk1_A 8 RWVEGITSEGYHYYYDLISGASQWEKPEGF 37 (50)
T ss_dssp CEEECCCSTTCCCEEESSSCCEESSCCTTC
T ss_pred CeEEEECCCCCEEEEECCCCCEEeeCChhh
Confidence 599999999999999999999999999653
No 52
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.70 E-value=0.0016 Score=37.64 Aligned_cols=30 Identities=27% Similarity=0.554 Sum_probs=27.6
Q ss_pred CceEEEcCCCcEEEeeCCCCeeeccCCCCC
Q psy14127 11 GWDFAQDYDGKVYFIDHNTKKTTWIDPRDR 40 (76)
Q Consensus 11 GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~ 40 (76)
.|....+.+|++||.|..|+.+.|+-|...
T Consensus 21 ~W~~v~T~dGR~fyyN~~Tk~S~WekP~eL 50 (73)
T 2dk7_A 21 PWCVVWTGDERVFFYNPTTRLSMWDRPDDL 50 (73)
T ss_dssp SCEEEEESSSCEEEEETTTTEECSSCCTTT
T ss_pred CcEEEECCCCCEEEecCcccceeccCChHh
Confidence 499999999999999999999999999764
No 53
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=96.27 E-value=0.011 Score=34.34 Aligned_cols=37 Identities=24% Similarity=0.556 Sum_probs=32.7
Q ss_pred CCCCCCcCceEEEcCCCcEEEeeCCCCeeeccCCCCC
Q psy14127 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDR 40 (76)
Q Consensus 4 ~~~~LP~GWe~~~~~~g~~yyvnh~tk~t~w~dPr~~ 40 (76)
..++||.||-...-.+|-..|++..|+..+|..|-..
T Consensus 25 ~~~~LPeGW~~v~H~SGmP~YlH~~trV~T~SrPY~l 61 (79)
T 3le4_A 25 PTEPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFL 61 (79)
T ss_dssp CCCCCCTTEEEEECTTSSEEEEETTTTEEESSCCCCC
T ss_pred cCCcCCCccEEEEecCCceEEEeccceEEeccCCeEe
Confidence 3568999999998899999999999999999998553
No 54
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=78.12 E-value=2.9 Score=23.76 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=16.2
Q ss_pred CCCCCcCceEEEcC--C------CcEEEeeCC
Q psy14127 5 EIPLPEGWDFAQDY--D------GKVYFIDHN 28 (76)
Q Consensus 5 ~~~LP~GWe~~~~~--~------g~~yyvnh~ 28 (76)
+..||.||+..+.. + ..+||+...
T Consensus 8 ~p~LP~GW~Re~~~R~~g~s~gk~DvyY~sP~ 39 (75)
T 1d9n_A 8 CPALGPGWKRREVFRKSGATCGRSDTYYQSPT 39 (75)
T ss_dssp CTTTCSSCEEEECSSSSSCTTCCCCEEEECSS
T ss_pred CCCCCCCCEEEEEEecCCCCCCceEEEEECCC
Confidence 56799999877642 2 246887653
No 55
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=76.01 E-value=3.1 Score=24.86 Aligned_cols=24 Identities=38% Similarity=0.778 Sum_probs=15.6
Q ss_pred CCCCCcCceEEEc--CCC------cEEEeeCC
Q psy14127 5 EIPLPEGWDFAQD--YDG------KVYFIDHN 28 (76)
Q Consensus 5 ~~~LP~GWe~~~~--~~g------~~yyvnh~ 28 (76)
+..||+||+..+- .+| .+||+...
T Consensus 21 ~~~lP~GW~re~~~R~~G~s~gk~DvYY~sP~ 52 (97)
T 3c2i_A 21 DPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQ 52 (97)
T ss_dssp CTTSCTTCEEEEEECCSSTTTTCEEEEEECTT
T ss_pred CCCCCCCCEEEEEEecCCCCCCcceEEEECCC
Confidence 4569999976653 232 46888653
No 56
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=69.79 E-value=4.3 Score=22.75 Aligned_cols=23 Identities=30% Similarity=0.650 Sum_probs=15.3
Q ss_pred CCCCCcCceEEEc--CCC------cEEEeeC
Q psy14127 5 EIPLPEGWDFAQD--YDG------KVYFIDH 27 (76)
Q Consensus 5 ~~~LP~GWe~~~~--~~g------~~yyvnh 27 (76)
..+||.||+.... ..| .+||+..
T Consensus 10 ~p~Lp~GW~R~~~~R~~g~s~~k~DvyY~sP 40 (72)
T 2ky8_A 10 CPALPPGWKKEEVIRKSGLSAGKSDVYYFSP 40 (72)
T ss_dssp CSSSCTTCEEEEEECCSSTTTTCEEEEEECT
T ss_pred CCCCCCCCEEEEEEecCCCCCCceEEEEECC
Confidence 5589999977764 233 3677764
No 57
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=66.04 E-value=5.4 Score=22.15 Aligned_cols=23 Identities=39% Similarity=0.882 Sum_probs=14.3
Q ss_pred CCCCCcCceEEEc--CCC------cEEEeeC
Q psy14127 5 EIPLPEGWDFAQD--YDG------KVYFIDH 27 (76)
Q Consensus 5 ~~~LP~GWe~~~~--~~g------~~yyvnh 27 (76)
-.+||.||+.... ..| .+||+..
T Consensus 3 ~~plp~GW~R~~~~R~~G~s~gk~DvyY~sP 33 (69)
T 3vxv_A 3 HKPVPCGWERVVKQRLSGKTAGKFDVYFISP 33 (69)
T ss_dssp -CCSCTTCEEEEEECCSSTTTTCEEEEEECT
T ss_pred CCcCCCCCEEEEEEeccCCCCCcceEEEEcC
Confidence 3589999977653 223 3677753
No 58
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=65.30 E-value=7.6 Score=24.42 Aligned_cols=24 Identities=38% Similarity=0.778 Sum_probs=15.9
Q ss_pred CCCCCcCceEEEc--CCC------cEEEeeCC
Q psy14127 5 EIPLPEGWDFAQD--YDG------KVYFIDHN 28 (76)
Q Consensus 5 ~~~LP~GWe~~~~--~~g------~~yyvnh~ 28 (76)
+..||.||+..+- .+| .+||+...
T Consensus 35 ~~~LP~GWkRe~~~RksG~Sagk~DVYY~SP~ 66 (133)
T 1ub1_A 35 DPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQ 66 (133)
T ss_dssp CCCBTTBCEEEEEECCCSSSCCSEEEEEECTT
T ss_pred CCCCCCCCEEEEEEecCCCCCCceeEEEECCC
Confidence 4569999976653 333 47888654
No 59
>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A
Probab=32.27 E-value=10 Score=28.47 Aligned_cols=13 Identities=62% Similarity=0.892 Sum_probs=8.9
Q ss_pred ccccccccccccC
Q psy14127 64 TTAHHDSHNMIVM 76 (76)
Q Consensus 64 ~~~~~~~~~~~~~ 76 (76)
.|-.||+||+||+
T Consensus 476 ss~~hdshni~v~ 488 (608)
T 3nqb_A 476 TTVSHDSHNLTVF 488 (608)
T ss_dssp ESCCTTTCCEEEE
T ss_pred EEcCcccCcEEEE
Confidence 4556777777763
Done!