RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14127
(76 letters)
>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues. Also
known as the WWP or rsp5 domain. Binds proline-rich
polypeptides.
Length = 33
Score = 44.9 bits (107), Expect = 2e-08
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39
PLP GW+ +D DG+ Y+ +H TK+T W PR+
Sbjct: 1 PLPPGWEERKDPDGRPYYYNHETKETQWEKPRE 33
>gnl|CDD|215899 pfam00397, WW, WW domain. The WW domain is a protein module with
two highly conserved tryptophans that binds
proline-rich peptide motifs in vitro.
Length = 30
Score = 43.7 bits (104), Expect = 5e-08
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 8 LPEGWDFAQDYDGKVYFIDHNTKKTTWIDP 37
LP GW+ D DG+ Y+ +HNT +T W P
Sbjct: 1 LPPGWEERTDTDGRPYYYNHNTGETQWERP 30
>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the
WWP or rsp5 domain; around 40 amino acids; functions as
an interaction module in a diverse set of signalling
proteins; binds specific proline-rich sequences but at
low affinities compared to other peptide recognition
proteins such as antibodies and receptors; WW domains
have a single groove formed by a conserved Trp and Tyr
which recognizes a pair of residues of the sequence
X-Pro; variable loops and neighboring domains confer
specificity in this domain; there are five distinct
groups based on binding: 1) PPXY motifs 2) the PPLP
motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR
motifs.
Length = 31
Score = 42.5 bits (101), Expect = 2e-07
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 9 PEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39
P GW+ D DG+VY+ +HNTK+T W DPR+
Sbjct: 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPRE 31
>gnl|CDD|222089 pfam13382, Adenine_deam_C, Adenine deaminase C-terminal domain.
This family represents a C-terminal region of the
adenine deaminase enzyme.
Length = 171
Score = 28.6 bits (65), Expect = 0.23
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 64 TTAHHDSHNMIVM 76
++ HDSHN+IV+
Sbjct: 59 SSVAHDSHNIIVV 71
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational
modification, protein turnover, chaperones].
Length = 872
Score = 28.2 bits (63), Expect = 0.34
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 7 PLPEGWD--FAQDYDGKVYFIDHNTKKTTWIDPR 38
PL GW Y + YF++H K T D R
Sbjct: 446 PLLSGWKTRLNNLY--RFYFVEHRKKTLTKNDSR 477
Score = 28.2 bits (63), Expect = 0.39
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 8 LPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39
P GW + + G+ F D T +T+ D R
Sbjct: 388 KPTGWSSSIEDLGQFLFSDFLTSSSTYEDLRR 419
Score = 24.3 bits (53), Expect = 6.7
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 6 IPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDP 37
+ L + D G+ Y++DH+ T + P
Sbjct: 297 LRLNSLFSTRADSFGRTYYLDHDRILTQYSRP 328
>gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and
modification].
Length = 590
Score = 28.1 bits (62), Expect = 0.36
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 12 WDFAQDYDGKVYFIDHNTKKTTWIDPRD 39
W+ + DG++Y+ + T K++W P++
Sbjct: 17 WEELKAPDGRIYYYNKRTGKSSWEKPKE 44
Score = 26.6 bits (58), Expect = 1.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 11 GWDFAQDYDGKVYFIDHNTKKTTWIDPRDR 40
W + DGKVY+ + T+++ W P +R
Sbjct: 57 PWKECRTADGKVYYYNSITRESRWKIPPER 86
>gnl|CDD|234340 TIGR03744, traC_PFL_4706, conjugative transfer ATPase, PFL_4706
family. Members of this protein family are predicted
ATP-binding proteins apparently associated with DNA
conjugal transfer. Members are found both in plasmids
and in bacterial chromosomal regions that appear to
derive from integrative elements such as conjugative
transposons. More distant homologs, outside the scope of
this family, include type IV secretion/conjugal transfer
proteins such as TraC, VirB4 and TrsE. The granularity
of this protein family definition is chosen so as to
represent one distinctive clade and act as a marker
through which to define and recognize the class of
mobile element it serves [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 893
Score = 26.5 bits (59), Expect = 1.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 4 GEIPLPEGWDFAQ 16
GE PLP G DFA+
Sbjct: 233 GEDPLPFGNDFAE 245
>gnl|CDD|224475 COG1559, COG1559, Aminodeoxychorismate lyase [Coenzyme transport
and metabolism].
Length = 342
Score = 25.7 bits (57), Expect = 2.7
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 6 IPLPEGWDFAQDYDG--KVYFIDHNTKKTTWIDPRDRYDTLEDPRLE 50
+ +PEG+ Q + +D + R L+ RLE
Sbjct: 118 VTIPEGYTLKQIAKKLAEAPVLDGVLDGLAIAEIAARLPKLDKERLE 164
>gnl|CDD|236042 PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated.
Length = 588
Score = 25.7 bits (57), Expect = 2.7
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 32 TTWI-DPRDRYDTLEDPRLEWRAIQEAM 58
T W + R R PR R IQ+A+
Sbjct: 372 TDWNEEARARKPDYMHPRQALREIQKAL 399
>gnl|CDD|185727 cd08986, GH43_7, Glycosyl hydrolase family 43. This glycosyl
hydrolase family 43 (GH43) includes enzymes with
beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC
3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-),
alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase
(EC 3.2.1.99), xylanase (EC 3.2.1.8),
endo-alpha-L-arabinanase and galactan
1,3-beta-galactosidase (EC 3.2.1.145) activities. These
are inverting enzymes (i.e. they invert the
stereochemistry of the anomeric carbon atom of the
substrate) that have an aspartate as the catalytic
general base, a glutamate as the catalytic general acid
and another aspartate that is responsible for pKa
modulation and orienting the catalytic acid. Many of the
enzymes in this family display both
alpha-L-arabinofuranosidase and beta-D-xylosidase
activity using aryl-glycosides as substrates. A common
structural feature of GH43 enzymes is a 5-bladed
beta-propeller domain that contains the catalytic acid
and catalytic base. A long V-shaped groove, partially
enclosed at one end, forms a single extended
substrate-binding surface across the face of the
propeller.
Length = 269
Score = 25.4 bits (56), Expect = 2.8
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 3 NGEIPLPEGWDFA--QDYDGKVYFIDHNT 29
G PL G D + +D DGKVY + HNT
Sbjct: 123 TGNKPLFPGIDPSLFEDDDGKVYLVWHNT 151
>gnl|CDD|238620 cd01295, AdeC, Adenine deaminase (AdeC) directly deaminates adenine
to form hypoxanthine. This reaction is part of one of
the adenine salvage pathways, as well as the degradation
pathway. It is important for adenine utilization as a
purine, as well as a nitrogen source in bacteria and
archea.
Length = 422
Score = 25.3 bits (56), Expect = 3.0
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 64 TTAHHDSHNMIVM 76
++ HDSHN+IV+
Sbjct: 316 SSVAHDSHNIIVI 328
>gnl|CDD|223933 COG1001, AdeC, Adenine deaminase [Nucleotide transport and
metabolism].
Length = 584
Score = 25.0 bits (55), Expect = 4.8
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 64 TTAHHDSHNMIV 75
+T HDSHN+IV
Sbjct: 467 STVAHDSHNIIV 478
>gnl|CDD|225741 COG3200, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP)
synthase [Amino acid transport and metabolism].
Length = 445
Score = 24.7 bits (54), Expect = 5.3
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 39 DRYDTLEDPRLE-WRAIQEAML 59
DRY T DPRL +A++ A L
Sbjct: 417 DRYHTHCDPRLNADQALELAFL 438
>gnl|CDD|222735 pfam14398, ATPgrasp_YheCD, YheC/D like ATP-grasp. A member of the
ATP-grasp fold predicted to be involved in the
modification/biosynthesis of spore-wall and capsular
proteins.
Length = 262
Score = 24.2 bits (53), Expect = 7.6
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 4 GEIPLPEGWDFAQDYDGKVYFIDHNTK 30
GE+ G D D G+++ ++ N+K
Sbjct: 210 GEL----GIDIGLDTQGRIWLLEANSK 232
>gnl|CDD|224843 COG1932, SerC, Phosphoserine aminotransferase [Coenzyme metabolism
/ Amino acid transport and metabolism].
Length = 365
Score = 24.1 bits (53), Expect = 7.8
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 4 GEIPLPEGWDFAQDYDGKVYFIDHNT 29
G IP WDF+ D D V+F + T
Sbjct: 131 GSIPDLSKWDFS-DNDAYVHFCWNET 155
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase. This enzyme forms a right
handed beta helix structure. Pectate lyase is an enzyme
involved in the maceration and soft rotting of plant
tissue.
Length = 200
Score = 24.0 bits (52), Expect = 8.1
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 12 WDFAQDYDGKVYFIDHNT-KKTTWIDPRDRYDTLED 46
D Q + +IDH + + D +D L D
Sbjct: 75 GDAIQIDNSGNIWIDHCSLSGHNFSDDDGSFDGLVD 110
>gnl|CDD|224484 COG1568, COG1568, Predicted methyltransferases [General function
prediction only].
Length = 354
Score = 24.4 bits (53), Expect = 8.6
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 43 TLEDPRLEWRAIQEAMLREY 62
E +WR IQ ++ E
Sbjct: 260 RRESSIDKWREIQRILINEM 279
>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B beta.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, beta (or Akt2) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-beta is the
predominant PKB isoform expressed in insulin-responsive
tissues. It plays a critical role in the regulation of
glucose homeostasis. It is also implicated in muscle
cell differentiation. Mice deficient in PKB-beta display
normal growth weights but exhibit severe insulin
resistance and diabetes, accompanied by lipoatrophy and
B-cell failure.
Length = 323
Score = 24.2 bits (52), Expect = 9.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 23 YFIDHNTKKTTWIDPRDRYDTLEDPRLEWRA 53
YF D T ++ I P DRYD+L L+ R
Sbjct: 283 YFDDEFTAQSITITPPDRYDSLGLLELDQRT 313
>gnl|CDD|216520 pfam01474, DAHP_synth_2, Class-II DAHP synthetase family. Members
of this family are aldolase enzymes that catalyze the
first step of the shikimate pathway.
Length = 437
Score = 24.0 bits (53), Expect = 9.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 36 DPRDRYDTLEDPRL 49
D DRY+T DPRL
Sbjct: 411 DLSDRYETACDPRL 424
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.448
Gapped
Lambda K H
0.267 0.0779 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,164,269
Number of extensions: 321559
Number of successful extensions: 404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 28
Length of query: 76
Length of database: 10,937,602
Length adjustment: 46
Effective length of query: 30
Effective length of database: 8,897,318
Effective search space: 266919540
Effective search space used: 266919540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)