RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14127
(76 letters)
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY
motif, liddle syndrome, proline-rich, ligase; NMR
{Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A
2joc_A*
Length = 50
Score = 64.6 bits (158), Expect = 3e-16
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
N PLP GW+ DG+V+FI+HN KKT W DPR
Sbjct: 7 NDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPR 42
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; MAGI1, WW domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 57
Score = 64.7 bits (158), Expect = 3e-16
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDP 47
PLPE W+ A +G+VYFIDHNTK T+W+DPR P
Sbjct: 14 PLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNKQQSGP 54
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain,
solution, complex, ligase/signaling protein complex;
NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB:
2op7_A
Length = 53
Score = 64.3 bits (157), Expect = 3e-16
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
E PLP GW+ G+ +F+DHNT++TT+ DPR
Sbjct: 16 EGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 49
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif,
binding affinity, signalling protein,ligase; NMR
{Drosophila melanogaster}
Length = 46
Score = 64.2 bits (157), Expect = 4e-16
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39
E PLP W +G+ +FIDH +++TTWIDPR+
Sbjct: 6 GEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRN 42
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling
protein-TRAN complex; NMR {Homo sapiens}
Length = 38
Score = 63.7 bits (156), Expect = 4e-16
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
E PLP+GW+ A DG++Y+I+H K T+W+DPR
Sbjct: 2 AMEGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Length = 36
Score = 63.6 bits (156), Expect = 4e-16
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
G PLP GW+ D G+ Y+++HN + T W P
Sbjct: 1 GSPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: k.22.1.1
Length = 40
Score = 63.8 bits (156), Expect = 4e-16
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
+G LPEGW+ DG YF+DHN + TT+IDPR
Sbjct: 3 SGSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPR 38
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka,
transcription; NMR {Oryzias latipes}
Length = 46
Score = 63.8 bits (156), Expect = 5e-16
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
PLPEGW+ A +G++Y+I+H K T+W+DPR
Sbjct: 7 PASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPR 42
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis;
NMR {Homo sapiens}
Length = 54
Score = 63.3 bits (154), Expect = 8e-16
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 1 KRNGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDP 47
++ LP GW+ D +G+V+F+DH K+TT++DPR + ++P
Sbjct: 5 RKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDNP 51
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human
modular domain, complex, HOST interaction, ligase; NMR
{Homo sapiens} PDB: 2kq0_A 2laj_A*
Length = 49
Score = 63.1 bits (154), Expect = 1e-15
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDR 40
LP+GW+ +G+ +FIDHNTK TTW DPR +
Sbjct: 12 FLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLK 45
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Length = 49
Score = 63.1 bits (154), Expect = 1e-15
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39
++PLP GW G+ Y+IDHNT T W P +
Sbjct: 8 EDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLE 43
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.22.1.1
Length = 40
Score = 62.3 bits (152), Expect = 1e-15
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
+G LP GW+ A DG YFI+H T+ T+WI P
Sbjct: 3 SGSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPV 38
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Length = 41
Score = 62.2 bits (152), Expect = 2e-15
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
+ LP GW+ +G+ +FIDHNTK TTW DPR
Sbjct: 6 QSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPR 39
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW
domain; NMR {Homo sapiens}
Length = 39
Score = 62.1 bits (152), Expect = 2e-15
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
PLP GW+ D G++Y++DH T+ TTW P
Sbjct: 6 PLPPGWERRVDNMGRIYYVDHFTRTTTWQRPT 37
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65
mutant, structural protein; NMR {Homo sapiens} SCOP:
b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Length = 46
Score = 62.3 bits (152), Expect = 2e-15
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
++PLP GW+ A+ G+ YF +H + TTW DPR
Sbjct: 5 DDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPR 39
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline
type II helix, PPII, ligase/signaling protein complex;
NMR {Homo sapiens} PDB: 2lb1_A
Length = 42
Score = 61.9 bits (151), Expect = 2e-15
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
G PLP GW+ G+VYF+DHN + T + DPR
Sbjct: 4 GSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPR 38
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
PDB: 2lb2_A*
Length = 36
Score = 61.8 bits (151), Expect = 3e-15
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
G LP GW+ +D G+ Y+++HN + TTW P
Sbjct: 1 GSPGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three
stranded antiparallel beta sheet, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 61.8 bits (151), Expect = 3e-15
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
+G LP GW+ D G+VY++DH K+TTW P
Sbjct: 3 SGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPS 38
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR
{} SCOP: k.22.1.1
Length = 37
Score = 60.7 bits (148), Expect = 8e-15
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
LP GWD + ++GK Y+ +HNTK +TW DPR
Sbjct: 3 GLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPR 34
>1ymz_A CC45; artificial protein, computational design, unknown function;
NMR {Synthetic} SCOP: k.22.1.1
Length = 43
Score = 60.7 bits (148), Expect = 9e-15
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
PLP GW+ D +GKVY+ + T TTW P
Sbjct: 8 PLPPGWERRTDVEGKVYYFNVRTLTTTWERPT 39
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain,
UBL-conjugation pathway, structural GE structural
genomics consortium, SGC, coiled coil; HET: MSE; 1.80A
{Homo sapiens}
Length = 109
Score = 60.0 bits (145), Expect = 8e-14
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
+ + LP GW+ D GK +F+DHN++ TT+IDPR
Sbjct: 68 DTRLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPR 103
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; BAI1-associated protein 1
(BAP-1); NMR {Homo sapiens}
Length = 49
Score = 54.3 bits (131), Expect = 3e-12
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
+ E+ LP GW+ +D +Y++DH +KT + +P
Sbjct: 9 DSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPS 44
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular
binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A*
2laz_A*
Length = 90
Score = 55.6 bits (134), Expect = 3e-12
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
PLP GW+ G+VYF+DHN + T + DPR
Sbjct: 55 PLPPGWEIRNTATGRVYFVDHNNRTTQFTDPR 86
Score = 54.9 bits (132), Expect = 5e-12
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDPRLEW 51
LPEG++ G+VYF+ T +TW DPR D E
Sbjct: 5 GSPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEEL 53
>2yse_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; MAGI-1, WW domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 60
Score = 53.0 bits (127), Expect = 1e-11
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
Query: 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDPRLEWRAIQE 56
+ E+ LP GW+ +D +Y++DH +KT + E+P LE + ++
Sbjct: 9 DSELELPAGWEKIEDPVYGIYYVDHINRKTQY----------ENPVLEAKRKKQ 52
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila
melanogaster} SCOP: b.72.1.1 b.72.1.1
Length = 88
Score = 53.7 bits (129), Expect = 1e-11
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDPRLE 50
PLP+GW+ D +VYF++H + T W DPR + +
Sbjct: 12 PLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEG 55
Score = 53.3 bits (128), Expect = 2e-11
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
PLP GW+ G+ +F+DHNT++TT+ DPR
Sbjct: 56 PLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 87
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.22.1.1
Length = 40
Score = 51.2 bits (123), Expect = 4e-11
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
+G LP GW G+ Y+++ T +TTW P
Sbjct: 3 SGSSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPS 38
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 49
Score = 43.7 bits (103), Expect = 5e-08
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDP 37
LP GW+ + + Y++DH K+ + P
Sbjct: 13 GLPPGWERVESSEFGTYYVDHTNKRAQYRHP 43
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear
protein, mRNA splicing, ribonucleoprotein; NMR
{Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Length = 75
Score = 43.3 bits (102), Expect = 1e-07
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39
GW A+ DGKVY+ + T++T+W P
Sbjct: 40 LRENGWKAAKTADGKVYYYNPTTRETSWTIPAF 72
Score = 39.5 bits (92), Expect = 3e-06
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 11 GWDFAQDYDGKVYFIDHNTKKTTWIDPRD--RYDTLEDPRLEWRAIQEAMLREY 62
W A+D G++Y+ + TKK+TW P++ + L W+A + A + Y
Sbjct: 3 IWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVY 56
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 429
Score = 42.3 bits (100), Expect = 2e-06
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDR 40
PLP GW+ +VYF+DHNTK TTW DPR
Sbjct: 8 PLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLP 41
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11,
protein binding; NMR {Homo sapiens}
Length = 92
Score = 40.4 bits (94), Expect = 2e-06
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD--RYDTLEDPRLEWRAIQEAMLREY 62
W + DG+ Y+ + TK++TW P D + W+ + + Y
Sbjct: 11 GAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKTY 68
Score = 35.8 bits (82), Expect = 1e-04
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 12 WDFAQDYDGKVYFIDHNTKKTTWIDPRD 39
W + GK Y+ + TK++ W P++
Sbjct: 57 WKEYKSDSGKTYYYNSQTKESRWAKPKE 84
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 41.2 bits (96), Expect = 4e-06
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYD 42
+ W+ A + Y+I+H T+ T W P+
Sbjct: 9 STSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTEL 46
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21,
WBP4, metal- binding, mRNA processing, mRNA splicing,
nucleus, polymorphism; NMR {Homo sapiens}
Length = 75
Score = 34.2 bits (78), Expect = 4e-04
Identities = 8/49 (16%), Positives = 17/49 (34%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDPRLEWRAIQ 55
P W +G Y+ D + + W P L+ ++ ++
Sbjct: 2 PSKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVE 50
Score = 31.6 bits (71), Expect = 0.004
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 9 PEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39
W DG Y+ + T ++ W P D
Sbjct: 45 KTVWVEGLSEDGFTYYYNTETGESRWEKPDD 75
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.22.1.1
Length = 40
Score = 28.2 bits (63), Expect = 0.042
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 3 NGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDP 37
+G E W + DGKVY+ + T+++ W P
Sbjct: 3 SGSSGTEEIWVENKTPDGKVYYYNARTRESAWTKP 37
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant
(R14A), oncogenic transformation, small molecule cycle,
rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo
sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A*
2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A*
3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A*
1f8a_B* ...
Length = 166
Score = 29.0 bits (65), Expect = 0.097
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 5 EIPLPEGWDFAQ-DYDGKVYFIDHNTKKTTWIDPRDRY 41
E LP GW+ A G+VY+ +H T + W P
Sbjct: 7 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNS 44
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain,
ordered linker; 1.60A {Candida albicans}
Length = 177
Score = 28.7 bits (64), Expect = 0.10
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 3 NGEIPLPEGWDFAQ-DYDGKVYFIDHNTKKTTWIDP 37
+ LP W K YF++ +T +++W P
Sbjct: 3 STSTGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPP 38
>2dk7_A Transcription elongation regulator 1; structural genomics, WW
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 73
Score = 27.8 bits (61), Expect = 0.13
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 5 EIPLP-EGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDPRL 49
P+P W D +V+F + T+ + W P D + ++
Sbjct: 14 TAPIPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKI 59
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich
peptides, protein-protein interactions, structural
protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A
1zr7_A 2dyf_A
Length = 41
Score = 27.1 bits (60), Expect = 0.13
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39
W + DG+ Y+ + TK++TW P D
Sbjct: 9 SAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDD 41
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain
group IV, rotamase; NMR {Emericella nidulans}
Length = 54
Score = 27.2 bits (60), Expect = 0.13
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 5 EIPLPEGWDFAQDY-DGKVYFIDHNTKKTTWIDPRD 39
LP GW+ Y+ + T+++ W P D
Sbjct: 5 NTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPAD 40
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.7 bits (61), Expect = 0.28
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 42 DTLEDPRLEWRA 53
D L D R EWR
Sbjct: 54 DKLVDTRSEWRT 65
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8
TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM
helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter
sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E*
2yiu_C*
Length = 187
Score = 26.6 bits (58), Expect = 0.75
Identities = 11/70 (15%), Positives = 19/70 (27%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDPRLEWRAIQEAMLREYLTTA 66
+ G + GK FI T+ + + L D I
Sbjct: 56 SVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRT 115
Query: 67 HHDSHNMIVM 76
++ +VM
Sbjct: 116 LDEAGEWLVM 125
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal
transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB:
2jup_W 2rly_W 2rm0_W 2nnt_A
Length = 37
Score = 24.7 bits (54), Expect = 0.95
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39
W + DGK Y+ ++ T ++TW P++
Sbjct: 3 TAVSEWTEYKTADGKTYYYNNRTLESTWEKPQE 35
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 26.1 bits (58), Expect = 1.0
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 5 EIPLPEG----WDFAQDYDGKVYFIDHNTKKTTWIDP 37
E L + DGKV+F H K + +D
Sbjct: 12 EFNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQ 48
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin,
immunoglobulin-like fold, PSI beta barrel, structural
genomics; HET: NAG; 2.90A {Phleum pratense} SCOP:
b.7.3.1 b.52.1.3
Length = 241
Score = 25.6 bits (55), Expect = 1.6
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 8 LPEGWDFAQDYDGK 21
+PEGW Y+ K
Sbjct: 228 IPEGWKADTSYESK 241
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B
member 1; triple-stranded beta-sheet; NMR {Homo
sapiens} SCOP: b.72.1.1
Length = 55
Score = 24.3 bits (52), Expect = 2.3
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDP 37
+ LP GW QD G Y+ T T W P
Sbjct: 16 TDSDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPP 48
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.72.1.1
Length = 50
Score = 23.8 bits (51), Expect = 2.6
Identities = 7/39 (17%), Positives = 12/39 (30%)
Query: 12 WDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDPRLE 50
W +G Y+ D + + W P L+
Sbjct: 9 WVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTSGP 47
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A
Length = 317
Score = 24.8 bits (55), Expect = 2.9
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 3/23 (13%)
Query: 10 EGW---DFAQDYDGKVYFIDHNT 29
W DF D G YF++ NT
Sbjct: 260 TDWGRADFMLDAAGNAYFLEVNT 282
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 24.9 bits (54), Expect = 2.9
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 13 DFAQDYDGKVYFIDHNTKKT 32
F +D G+VY + + T
Sbjct: 340 GFGEDELGEVYILSSSKSMT 359
Score = 24.6 bits (53), Expect = 4.3
Identities = 7/51 (13%), Positives = 13/51 (25%)
Query: 1 KRNGEIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDPRLEW 51
R + G D +G + + W + T R +
Sbjct: 284 YRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYF 334
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant;
triangular beta-sheet cluster, signaling protein; 3.10A
{Homo sapiens}
Length = 369
Score = 25.0 bits (54), Expect = 3.0
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 14 FAQDYDGKVYFIDHNTKKTTW 34
F + DG V +D + W
Sbjct: 177 FVSNGDGLVVTVDSESGDVLW 197
Score = 23.5 bits (50), Expect = 9.6
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 14 FAQDYDGKVYFIDHNTKKTTW 34
F DG ++ + T W
Sbjct: 13 FVSTLDGSLHAVSKRTGSIKW 33
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A
immunoglobulin L sandwich, allergen; HET: NAG MAN FCA;
2.75A {Zea mays}
Length = 245
Score = 24.8 bits (53), Expect = 3.1
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 8 LPEGWDFAQDYDGKVYF 24
+P W Y V F
Sbjct: 228 IPANWRPDAVYTSNVQF 244
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii
atcc 33406}
Length = 362
Score = 24.5 bits (54), Expect = 3.5
Identities = 5/25 (20%), Positives = 9/25 (36%), Gaps = 2/25 (8%)
Query: 4 GEIPLPEGWDFAQDYDGKVYFIDHN 28
G+ P D + + + HN
Sbjct: 117 GKGFYPADITVPADAE--IICLTHN 139
>3i7j_A Beta-lactamase MB2281C; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 2.20A
{Mycobacterium bovis}
Length = 280
Score = 24.7 bits (54), Expect = 3.9
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 34 WIDPRDRY------DTLEDPRLE--WRAIQEAMLREYLTTAHHDSH 71
W+DP+ W AI +A+L EY HH H
Sbjct: 235 WVDPKADLALVVLTARDFGDWALDLWPAISDAVLAEYTLEHHHHHH 280
>3on5_A BH1974 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
oxidoreductase; 2.80A {Bacillus halodurans}
Length = 362
Score = 24.4 bits (53), Expect = 4.0
Identities = 5/44 (11%), Positives = 11/44 (25%), Gaps = 1/44 (2%)
Query: 32 TTWIDPRDRYDTLEDPRLEWRAIQEAMLREYLTTAHHDSHNMIV 75
T D R + I ++L + ++
Sbjct: 225 TVVTDWRPNQCEKHFF-PDADEIIVDFPADFLRKFLIRPDDFVL 267
>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure
initiative, N SGX research center for structural
genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens}
PDB: 3t81_A 3t8l_A
Length = 608
Score = 24.6 bits (53), Expect = 4.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 64 TTAHHDSHNMIVM 76
TT HDSHN+ V
Sbjct: 476 TTVSHDSHNLTVF 488
>1xn5_A BH1534 unknown conserved protein; structural genomics, protein
structure initiative, PSI, BACI halodurans protein
BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP:
d.129.3.5
Length = 146
Score = 24.4 bits (53), Expect = 4.3
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 51 WRAIQEAMLREYLTTAHHDSHN 72
W + LR+ + HH H+
Sbjct: 125 WHDLVNERLRQIVELEHHHHHH 146
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane
protein folding, negative, BAMA, protein binding; 1.65A
{Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A
2yh3_A
Length = 376
Score = 24.4 bits (53), Expect = 4.5
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 17 DYDGKVYFIDHNTKKTTW 34
D +G +++I+ +
Sbjct: 325 DSEGYLHWINVEDGRFVA 342
Score = 24.0 bits (52), Expect = 6.9
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 14 FAQDYDGKVYFIDHNTKKTTW 34
+A D G V ++ + K W
Sbjct: 57 YAADRAGLVKALNADDGKEIW 77
Score = 23.6 bits (51), Expect = 7.7
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 14 FAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDP 47
+ D + +V + + T W + L P
Sbjct: 281 YLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSP 314
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D
domain swapping, heme binding, MI processing, heme,
iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Length = 79
Score = 23.9 bits (51), Expect = 4.5
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDP 37
PLP+GW G ++ ++ TW P
Sbjct: 28 PLPDGWIMTFHNSGVPVYLHRESRVVTWSRP 58
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 24.2 bits (53), Expect = 4.7
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 5 EIPLPEG----WDFAQDYDGKVYFIDHNTKKTTWIDP 37
E+ L + GKV+ H + I+
Sbjct: 7 ELNLTNQDTGPYGITVSDKGKVWITQHKANMISCINL 43
Score = 23.8 bits (52), Expect = 6.2
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 5 EIPLPEG----WDFAQDYDGKVYFIDHNTKKTTWIDP 37
E PLP DG+V+F ++ K I
Sbjct: 49 EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITK 85
Score = 23.8 bits (52), Expect = 7.5
Identities = 4/37 (10%), Positives = 9/37 (24%), Gaps = 4/37 (10%)
Query: 5 EIPLPEG----WDFAQDYDGKVYFIDHNTKKTTWIDP 37
E +P ++F + K +
Sbjct: 217 EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.2 bits (52), Expect = 4.8
Identities = 13/82 (15%), Positives = 22/82 (26%), Gaps = 34/82 (41%)
Query: 14 FAQDYDGKVYF------IDHNTKKTTWIDPRDRYDTLED-----PRL------EWRAIQE 56
F DGK+ I+ ++ T+ + L P L + ++
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEK---GLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 57 AMLR------------EYLTTA 66
L EY A
Sbjct: 1750 KGLIPADATFAGHSLGEY--AA 1769
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator,
complex, LXXLL motif, transcriptional regulation; 2.2A
{Mus musculus} SCOP: d.110.3.8
Length = 132
Score = 24.1 bits (52), Expect = 4.8
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 4 GEIPLPEGWDFAQDYDGKVYFIDHNTKKTT 33
G + E + QD GK+ ID ++ +
Sbjct: 1 GHMTGVESFMTKQDTTGKIISIDTSSLRAA 30
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell
WALL, peptidoglycan synthesis, vancomycin, ADP binding;
HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2
d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Length = 306
Score = 24.0 bits (53), Expect = 6.2
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 10 EGW---DFAQDYDGKVYFIDHNT 29
+GW D D DG+ Y ++ NT
Sbjct: 251 KGWGRIDVMLDSDGQFYLLEANT 273
>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG;
DAH7P synthase, shikimate pathway, aromatic
biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium
tuberculosis} PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A*
3nv8_A* 3pfp_A* 2w19_A 2w1a_A*
Length = 462
Score = 23.9 bits (51), Expect = 7.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 36 DPRDRYDTLEDPRL 49
D RY+T DPRL
Sbjct: 431 DLAGRYETACDPRL 444
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.448
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,380,722
Number of extensions: 69750
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 84
Length of query: 76
Length of database: 6,701,793
Length adjustment: 45
Effective length of query: 31
Effective length of database: 5,445,348
Effective search space: 168805788
Effective search space used: 168805788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)