RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14127
(76 letters)
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain
{fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 33
Score = 57.3 bits (139), Expect = 5e-14
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
PLP GW+ G+ +F+DHNT++TT+ DPR
Sbjct: 2 PLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 33
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 50
Score = 57.4 bits (139), Expect = 7e-14
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
PLP GW+ DG+V+FI+HN KKT W DPR
Sbjct: 11 PLPPGWEERTHTDGRVFFINHNIKKTQWEDPR 42
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 45
Score = 57.0 bits (138), Expect = 9e-14
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
PLP+GW+ D +VYF++H + T W DPR
Sbjct: 12 PLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPR 43
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 46
Score = 56.7 bits (137), Expect = 1e-13
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 5 EIPLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRY 41
++PLP GW+ A+ G+ YF +H + TTW DPR
Sbjct: 6 DVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAM 42
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 34
Score = 43.5 bits (103), Expect = 1e-08
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 8 LPEGWDFAQDY-DGKVYFIDHNTKKTTWIDP 37
LP GW+ G+VY+ +H T + W P
Sbjct: 2 LPPGWEKRMSRSSGRVYYFNHITNASQWERP 32
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain
{Domestic mouse (Mus musculus) [TaxId: 10090]}
Length = 37
Score = 34.0 bits (78), Expect = 9e-05
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRD 39
W + DGK Y+ ++ T ++TW P++
Sbjct: 3 TAVSEWTEYKTADGKTYYYNNRTLESTWEKPQE 35
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 46
Score = 31.7 bits (72), Expect = 7e-04
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 11 GWDFAQDYDGKVYFIDHNTKKTTWIDPR 38
GW A+ DGKVY+ + T++T+W P
Sbjct: 15 GWKAAKTADGKVYYYNPTTRETSWTIPA 42
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 29
Score = 25.5 bits (56), Expect = 0.14
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 12 WDFAQDYDGKVYFIDHNTKKTTWIDP 37
W A+D G++Y+ + TKK+TW P
Sbjct: 4 WKEAKDASGRIYYYNTLTKKSTWEKP 29
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein
HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.5 bits (56), Expect = 0.15
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 12 WDFAQDYDGKVYFIDHNTKKTTWIDP 37
W + DG+ Y+ + TK++TW P
Sbjct: 3 WTEHKSPDGRTYYYNTETKQSTWEKP 28
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 24.4 bits (53), Expect = 0.43
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 12 WDFAQDYDGKVYFIDHNTKKTTWIDPRD 39
W +G Y+ D + + W P
Sbjct: 3 WVEGITSEGYHYYYDLISGASQWEKPEG 30
>d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome
bc1-complex, water-soluble domain {Cow (Bos taurus)
[TaxId: 9913]}
Length = 127
Score = 23.9 bits (51), Expect = 2.1
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 7 PLPEGWDFAQDYDGKVYFIDHNTKKTTWIDPRDRYDTLEDPRLEWR 52
+PEG + A + GK F+ H TKK + L DP+ +
Sbjct: 11 DIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLE 56
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 206
Score = 23.9 bits (50), Expect = 2.5
Identities = 4/19 (21%), Positives = 5/19 (26%)
Query: 11 GWDFAQDYDGKVYFIDHNT 29
DGK Y +
Sbjct: 158 AVKAVHGKDGKDYIFEVMD 176
>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 38
Score = 22.2 bits (47), Expect = 3.5
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 23 YFIDHNTKKTTW 34
Y+I+H T+ T W
Sbjct: 26 YYINHETQTTCW 37
>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG,
phenylalanine-repressible {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 462
Score = 23.3 bits (50), Expect = 3.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 36 DPRDRYDTLEDPRL 49
D RY+T DPRL
Sbjct: 431 DLAGRYETACDPRL 444
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Pyrococcus furiosus
[TaxId: 2261]}
Length = 235
Score = 22.5 bits (47), Expect = 7.3
Identities = 1/18 (5%), Positives = 5/18 (27%)
Query: 12 WDFAQDYDGKVYFIDHNT 29
+ D + + +
Sbjct: 170 LEGVFTPDLEFVVFEISA 187
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 120
Score = 22.2 bits (47), Expect = 8.6
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 21 KVYFIDHNTKKTTWIDPRDRYDTLEDPRLEWRAIQEAMLREYLTTAH 67
K +D K +++P ++ L WR E + ++L H
Sbjct: 46 KQSDVDLYAIKEFFLNP----PVTDNYNLVWRDPDEEGILKFLCDEH 88
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
Length = 228
Score = 22.3 bits (46), Expect = 8.8
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 11 GWDFAQDYDGKVYFIDHNT 29
DF D + Y + NT
Sbjct: 167 RMDFLLDENNVPYLGEPNT 185
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.448
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 341,571
Number of extensions: 13951
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 26
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)