BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14128
(393 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q66HF1|NDUS1_RAT NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
OS=Rattus norvegicus GN=Ndufs1 PE=1 SV=1
Length = 727
Score = 247 bits (630), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 145/307 (47%), Positives = 182/307 (59%), Gaps = 72/307 (23%)
Query: 86 DMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEY 145
D LSR V ++Q K VA + G L DAEA+VALKDLLNK+ S+ L TE
Sbjct: 321 DALSR-----VAGMLQSFEGKA-----VAAIAGGLVDAEALVALKDLLNKVDSDTLCTEE 370
Query: 146 AFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVA 205
FP EGAGTDLR+NYLLN IAG EEAD++LL+GTNPRFEAPLFNARIRK +L N+L VA
Sbjct: 371 IFPNEGAGTDLRSNYLLNTTIAGVEEADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVA 430
Query: 206 YIGPKVDLRYDYEHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVL 265
IG VDL Y Y+HLG+S +++ +ASG+H FSK L AAKKP++V+G+ L R DGAA+L
Sbjct: 431 LIGSPVDLTYRYDHLGDSPKILQDIASGNHEFSKVLNAAKKPMVVLGSSALQRDDGAAIL 490
Query: 266 ALVQQLAAKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAA 325
A V +A K+ ++ASG+ A K
Sbjct: 491 AAVSSIAQKI---------------RVASGAAAEWK------------------------ 511
Query: 326 VLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLL 385
V+ ++ ++A SQVAALD+GYKPG AIR+ PPK+LFLL
Sbjct: 512 VMNILHRIA-----------------------SQVAALDLGYKPGVEAIRKNPPKLLFLL 548
Query: 386 GADEGSI 392
GAD G I
Sbjct: 549 GADGGCI 555
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 98/141 (69%), Gaps = 3/141 (2%)
Query: 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQ 61
EEAD++LL+GTNPRFEAPLFNARIRK +L N+L VA IG VDL Y Y+HLG+S +++
Sbjct: 395 EEADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVALIGSPVDLTYRYDHLGDSPKILQD 454
Query: 62 LASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAG---VVG 118
+ASG+H FSK L+AAKKP++V+G+ L R DGAA+LA V +A K+ S A V+
Sbjct: 455 IASGNHEFSKVLNAAKKPMVVLGSSALQRDDGAAILAAVSSIAQKIRVASGAAAEWKVMN 514
Query: 119 SLADAEAMVALKDLLNKLGSE 139
L + VA DL K G E
Sbjct: 515 ILHRIASQVAALDLGYKPGVE 535
>sp|Q0MQG1|NDUS1_GORGO NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
OS=Gorilla gorilla gorilla GN=NDUFS1 PE=2 SV=1
Length = 727
Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 140/307 (45%), Positives = 179/307 (58%), Gaps = 72/307 (23%)
Query: 86 DMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEY 145
D LSR V ++Q K DVA + G L DAEA+VALKDLLN++ S+ L TE
Sbjct: 321 DALSR-----VAGMLQSFQGK-----DVAAIAGGLVDAEALVALKDLLNRVDSDTLCTEE 370
Query: 146 AFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVA 205
FP GAGTDLR+NYLLN IAG EEAD++LL+GTNPRFEAPLFNARIRK +L N+L VA
Sbjct: 371 VFPTAGAGTDLRSNYLLNTTIAGVEEADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVA 430
Query: 206 YIGPKVDLRYDYEHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVL 265
IG VDL Y Y+HLG+S +++ +ASGSH FS+ L AKKP++V+G+ L R+DGAA+L
Sbjct: 431 LIGSPVDLTYTYDHLGDSPKILQDIASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAIL 490
Query: 266 ALVQQLAAKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAA 325
A V +A K+ ++ SG K
Sbjct: 491 AAVSSIAQKI---------------RMTSGVTGDWK------------------------ 511
Query: 326 VLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLL 385
V+ ++ ++A++V AALD+GYKPG AIR+ PPKVLFLL
Sbjct: 512 VMNILHRIASQV-----------------------AALDLGYKPGVEAIRKNPPKVLFLL 548
Query: 386 GADEGSI 392
GAD G I
Sbjct: 549 GADGGCI 555
Score = 149 bits (375), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 99/141 (70%), Gaps = 3/141 (2%)
Query: 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQ 61
EEAD++LL+GTNPRFEAPLFNARIRK +L N+L VA IG VDL Y Y+HLG+S +++
Sbjct: 395 EEADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVALIGSPVDLTYTYDHLGDSPKILQD 454
Query: 62 LASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAG---VVG 118
+ASGSHPFS+ L AKKP++V+G+ L R+DGAA+LA V +A K+ S V G V+
Sbjct: 455 IASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAILAAVSSIAQKIRMTSGVTGDWKVMN 514
Query: 119 SLADAEAMVALKDLLNKLGSE 139
L + VA DL K G E
Sbjct: 515 ILHRIASQVAALDLGYKPGVE 535
>sp|P28331|NDUS1_HUMAN NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
OS=Homo sapiens GN=NDUFS1 PE=1 SV=3
Length = 727
Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 140/307 (45%), Positives = 179/307 (58%), Gaps = 72/307 (23%)
Query: 86 DMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEY 145
D LSR V ++Q K DVA + G L DAEA+VALKDLLN++ S+ L TE
Sbjct: 321 DALSR-----VAGMLQSFQGK-----DVAAIAGGLVDAEALVALKDLLNRVDSDTLCTEE 370
Query: 146 AFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVA 205
FP GAGTDLR+NYLLN IAG EEAD++LL+GTNPRFEAPLFNARIRK +L N+L VA
Sbjct: 371 VFPTAGAGTDLRSNYLLNTTIAGVEEADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVA 430
Query: 206 YIGPKVDLRYDYEHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVL 265
IG VDL Y Y+HLG+S +++ +ASGSH FS+ L AKKP++V+G+ L R+DGAA+L
Sbjct: 431 LIGSPVDLTYTYDHLGDSPKILQDIASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAIL 490
Query: 266 ALVQQLAAKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAA 325
A V +A K+ ++ SG K
Sbjct: 491 AAVSSIAQKI---------------RMTSGVTGDWK------------------------ 511
Query: 326 VLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLL 385
V+ ++ ++A++V AALD+GYKPG AIR+ PPKVLFLL
Sbjct: 512 VMNILHRIASQV-----------------------AALDLGYKPGVEAIRKNPPKVLFLL 548
Query: 386 GADEGSI 392
GAD G I
Sbjct: 549 GADGGCI 555
Score = 149 bits (375), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 99/141 (70%), Gaps = 3/141 (2%)
Query: 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQ 61
EEAD++LL+GTNPRFEAPLFNARIRK +L N+L VA IG VDL Y Y+HLG+S +++
Sbjct: 395 EEADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVALIGSPVDLTYTYDHLGDSPKILQD 454
Query: 62 LASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAG---VVG 118
+ASGSHPFS+ L AKKP++V+G+ L R+DGAA+LA V +A K+ S V G V+
Sbjct: 455 IASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAILAAVSSIAQKIRMTSGVTGDWKVMN 514
Query: 119 SLADAEAMVALKDLLNKLGSE 139
L + VA DL K G E
Sbjct: 515 ILHRIASQVAALDLGYKPGVE 535
>sp|Q0MQG2|NDUS1_PANTR NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pan
troglodytes GN=NDUFS1 PE=2 SV=1
Length = 727
Score = 241 bits (616), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 139/307 (45%), Positives = 179/307 (58%), Gaps = 72/307 (23%)
Query: 86 DMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEY 145
D LSR V ++Q K DVA + G L DAEA+VALKDLLN++ S+ L TE
Sbjct: 321 DALSR-----VAGMLQTFQGK-----DVAAIAGGLVDAEALVALKDLLNRVDSDTLCTEE 370
Query: 146 AFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVA 205
FP GAGTDLR+NYLLN IAG EEAD++LL+GTNPRFEAPLFNAR+RK +L N+L VA
Sbjct: 371 VFPTAGAGTDLRSNYLLNTTIAGVEEADVVLLVGTNPRFEAPLFNARLRKSWLHNDLKVA 430
Query: 206 YIGPKVDLRYDYEHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVL 265
IG VDL Y Y+HLG+S +++ +ASGSH FS+ L AKKP++V+G+ L R+DGAA+L
Sbjct: 431 LIGSPVDLTYTYDHLGDSPKILQDIASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAIL 490
Query: 266 ALVQQLAAKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAA 325
A V +A K+ ++ SG K
Sbjct: 491 AAVSSIAQKI---------------RMTSGVTGDWK------------------------ 511
Query: 326 VLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLL 385
V+ ++ ++A++V AALD+GYKPG AIR+ PPKVLFLL
Sbjct: 512 VMNILHRIASQV-----------------------AALDLGYKPGVEAIRKNPPKVLFLL 548
Query: 386 GADEGSI 392
GAD G I
Sbjct: 549 GADGGCI 555
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 99/141 (70%), Gaps = 3/141 (2%)
Query: 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQ 61
EEAD++LL+GTNPRFEAPLFNAR+RK +L N+L VA IG VDL Y Y+HLG+S +++
Sbjct: 395 EEADVVLLVGTNPRFEAPLFNARLRKSWLHNDLKVALIGSPVDLTYTYDHLGDSPKILQD 454
Query: 62 LASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAG---VVG 118
+ASGSHPFS+ L AKKP++V+G+ L R+DGAA+LA V +A K+ S V G V+
Sbjct: 455 IASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAILAAVSSIAQKIRMTSGVTGDWKVMN 514
Query: 119 SLADAEAMVALKDLLNKLGSE 139
L + VA DL K G E
Sbjct: 515 ILHRIASQVAALDLGYKPGVE 535
>sp|Q4R6K9|NDUS1_MACFA NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
OS=Macaca fascicularis GN=NDUFS1 PE=2 SV=1
Length = 727
Score = 241 bits (615), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 139/307 (45%), Positives = 178/307 (57%), Gaps = 72/307 (23%)
Query: 86 DMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEY 145
D LSR V ++Q K DVA + G L DAEA+VALKDLLN++ S+ L TE
Sbjct: 321 DALSR-----VAGMLQSFQGK-----DVAAIAGGLVDAEALVALKDLLNRVDSDTLCTEE 370
Query: 146 AFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVA 205
FP GAGTDLR+NYLLN IAG EEAD++LL+GTNPRFE PLFNARIRK +L N+L VA
Sbjct: 371 VFPTAGAGTDLRSNYLLNTTIAGVEEADVVLLVGTNPRFEVPLFNARIRKSWLHNDLKVA 430
Query: 206 YIGPKVDLRYDYEHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVL 265
IG VDL Y Y+HLG+S +++ +ASGSH FS+ L AKKP++V+G+ L R+DGAA+L
Sbjct: 431 LIGSPVDLTYRYDHLGDSPKILQDIASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAIL 490
Query: 266 ALVQQLAAKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAA 325
A V +A K+ ++ SG K
Sbjct: 491 AAVSSIAQKI---------------RMTSGVTGDWK------------------------ 511
Query: 326 VLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLL 385
V+ ++ ++A++V AALD+GYKPG AIR+ PPKVLFLL
Sbjct: 512 VMNILHRIASQV-----------------------AALDLGYKPGVEAIRKNPPKVLFLL 548
Query: 386 GADEGSI 392
GAD G I
Sbjct: 549 GADGGCI 555
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 98/141 (69%), Gaps = 3/141 (2%)
Query: 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQ 61
EEAD++LL+GTNPRFE PLFNARIRK +L N+L VA IG VDL Y Y+HLG+S +++
Sbjct: 395 EEADVVLLVGTNPRFEVPLFNARIRKSWLHNDLKVALIGSPVDLTYRYDHLGDSPKILQD 454
Query: 62 LASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAG---VVG 118
+ASGSHPFS+ L AKKP++V+G+ L R+DGAA+LA V +A K+ S V G V+
Sbjct: 455 IASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAILAAVSSIAQKIRMTSGVTGDWKVMN 514
Query: 119 SLADAEAMVALKDLLNKLGSE 139
L + VA DL K G E
Sbjct: 515 ILHRIASQVAALDLGYKPGVE 535
>sp|P0CB68|NDUS1_PONPY NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
OS=Pongo pygmaeus GN=NDUFS1 PE=2 SV=1
Length = 727
Score = 240 bits (613), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 138/307 (44%), Positives = 179/307 (58%), Gaps = 72/307 (23%)
Query: 86 DMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEY 145
D LSR V ++Q K DVA + G L DAEA+VALKDLLN++ S+ L TE
Sbjct: 321 DALSR-----VAGMLQSFQGK-----DVAAIAGGLVDAEALVALKDLLNRVDSDTLCTEE 370
Query: 146 AFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVA 205
FP GAGTDLR+NYLLN IAG EEAD++LL+GTNPRFEAPLFNARIRK +L N+L VA
Sbjct: 371 VFPTAGAGTDLRSNYLLNTTIAGVEEADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVA 430
Query: 206 YIGPKVDLRYDYEHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVL 265
IG VDL Y Y+HLG+S +++ +ASGSH FS+ L AKKP++V+G+ L R+DGAA+L
Sbjct: 431 LIGSPVDLTYTYDHLGDSPKILQDIASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAIL 490
Query: 266 ALVQQLAAKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAA 325
A V +A K+ ++ SG K
Sbjct: 491 AAVSSIAQKI---------------RMTSGVTGDWK------------------------ 511
Query: 326 VLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLL 385
V+ ++ ++A++V AALD+GYKPG AIR+ PP++LFLL
Sbjct: 512 VMNILHRIASQV-----------------------AALDLGYKPGVEAIRKNPPRLLFLL 548
Query: 386 GADEGSI 392
GAD G I
Sbjct: 549 GADGGCI 555
Score = 149 bits (375), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 99/141 (70%), Gaps = 3/141 (2%)
Query: 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQ 61
EEAD++LL+GTNPRFEAPLFNARIRK +L N+L VA IG VDL Y Y+HLG+S +++
Sbjct: 395 EEADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVALIGSPVDLTYTYDHLGDSPKILQD 454
Query: 62 LASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAG---VVG 118
+ASGSHPFS+ L AKKP++V+G+ L R+DGAA+LA V +A K+ S V G V+
Sbjct: 455 IASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAILAAVSSIAQKIRMTSGVTGDWKVMN 514
Query: 119 SLADAEAMVALKDLLNKLGSE 139
L + VA DL K G E
Sbjct: 515 ILHRIASQVAALDLGYKPGVE 535
>sp|P15690|NDUS1_BOVIN NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Bos
taurus GN=NDUFS1 PE=1 SV=1
Length = 727
Score = 239 bits (609), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 128/282 (45%), Positives = 169/282 (59%), Gaps = 62/282 (21%)
Query: 111 SDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAE 170
+DVA + G L DAEA++ALKDLLN++ S+ L TE FP GAGTDLR+NYLLN IAG E
Sbjct: 336 NDVAAIAGGLVDAEALIALKDLLNRVDSDTLCTEEVFPTAGAGTDLRSNYLLNTTIAGVE 395
Query: 171 EADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQL 230
EAD++LL+GTNPRFEAPLFNARIRK +L N+L VA IG VDL Y Y+HLG+S +++ +
Sbjct: 396 EADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVALIGSPVDLTYRYDHLGDSPKILQDI 455
Query: 231 ASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIK 290
ASGSH FS+ L AKKP++++G+ L R+DGAA+LA V +A K+ S G+
Sbjct: 456 ASGSHPFSQVLQEAKKPMVILGSSALQRNDGAAILAAVSNIAQKIRTSSGVTGD------ 509
Query: 291 QLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVPCDWKVL 350
V+ ++ ++A++V
Sbjct: 510 ---------------------------------WKVMNILHRIASQV------------- 523
Query: 351 NILQKAASQVAALDIGYKPGTSAIREKPPKVLFLLGADEGSI 392
AALD+GYKPG AI++ PPK+LFLLGAD G I
Sbjct: 524 ----------AALDLGYKPGVEAIQKNPPKMLFLLGADGGCI 555
Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 99/141 (70%), Gaps = 3/141 (2%)
Query: 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQ 61
EEAD++LL+GTNPRFEAPLFNARIRK +L N+L VA IG VDL Y Y+HLG+S +++
Sbjct: 395 EEADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVALIGSPVDLTYRYDHLGDSPKILQD 454
Query: 62 LASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAG---VVG 118
+ASGSHPFS+ L AKKP++++G+ L R+DGAA+LA V +A K+ S V G V+
Sbjct: 455 IASGSHPFSQVLQEAKKPMVILGSSALQRNDGAAILAAVSNIAQKIRTSSGVTGDWKVMN 514
Query: 119 SLADAEAMVALKDLLNKLGSE 139
L + VA DL K G E
Sbjct: 515 ILHRIASQVAALDLGYKPGVE 535
>sp|P0CB67|NDUS1_PONAB NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
OS=Pongo abelii GN=NDUFS1 PE=2 SV=1
Length = 727
Score = 238 bits (608), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 137/307 (44%), Positives = 178/307 (57%), Gaps = 72/307 (23%)
Query: 86 DMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEY 145
D LSR V ++Q K DVA + G L DAEA+VALKDLLN++ S+ L TE
Sbjct: 321 DALSR-----VAGMLQSFQGK-----DVAAIAGGLVDAEALVALKDLLNRVDSDTLCTEE 370
Query: 146 AFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVA 205
FP GAGTDLR+NYLLN IAG EEAD++LL+GTNPRFEAPLFNARIRK +L N+L VA
Sbjct: 371 VFPTAGAGTDLRSNYLLNTTIAGVEEADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVA 430
Query: 206 YIGPKVDLRYDYEHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVL 265
IG VDL Y Y+HLG+S +++ +ASGSH FS+ L AKKP++V+G+ L R+DGAA+L
Sbjct: 431 LIGSPVDLTYTYDHLGDSPKILQDIASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAIL 490
Query: 266 ALVQQLAAKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAA 325
A +A K+ ++ SG K
Sbjct: 491 AAFSSIAQKI---------------RMTSGVTGDWK------------------------ 511
Query: 326 VLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLL 385
V+ ++ ++A++V AALD+GYKPG AIR+ PP++LFLL
Sbjct: 512 VMNILHRIASQV-----------------------AALDLGYKPGVEAIRKNPPRLLFLL 548
Query: 386 GADEGSI 392
GAD G I
Sbjct: 549 GADGGCI 555
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 98/141 (69%), Gaps = 3/141 (2%)
Query: 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQ 61
EEAD++LL+GTNPRFEAPLFNARIRK +L N+L VA IG VDL Y Y+HLG+S +++
Sbjct: 395 EEADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVALIGSPVDLTYTYDHLGDSPKILQD 454
Query: 62 LASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAG---VVG 118
+ASGSHPFS+ L AKKP++V+G+ L R+DGAA+LA +A K+ S V G V+
Sbjct: 455 IASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAILAAFSSIAQKIRMTSGVTGDWKVMN 514
Query: 119 SLADAEAMVALKDLLNKLGSE 139
L + VA DL K G E
Sbjct: 515 ILHRIASQVAALDLGYKPGVE 535
>sp|Q91VD9|NDUS1_MOUSE NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Mus
musculus GN=Ndufs1 PE=1 SV=2
Length = 727
Score = 236 bits (601), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 129/280 (46%), Positives = 168/280 (60%), Gaps = 62/280 (22%)
Query: 113 VAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEA 172
VA + G L DAEA+VALKDLLNK+ S++L TE FP EGAGTDLR+NYLLN IAG EEA
Sbjct: 338 VAAIAGGLVDAEALVALKDLLNKVDSDNLCTEEIFPTEGAGTDLRSNYLLNTTIAGVEEA 397
Query: 173 DLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLAS 232
D++LL+GTNPRFEAPLFNARIRK +L N+L VA IG VDL Y Y+HLG+S +++ +AS
Sbjct: 398 DVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVALIGSPVDLTYRYDHLGDSPKILQDIAS 457
Query: 233 GSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESADLIKQL 292
G H+F + L AKKP++V+G+ L R DGAA+L V + K+ ++
Sbjct: 458 GRHSFCEVLKDAKKPMVVLGSSALQRDDGAAILVAVSNMVQKI---------------RV 502
Query: 293 ASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVPCDWKVLNI 352
+G A K V+ ++ ++A++V
Sbjct: 503 TTGVAAEWK------------------------VMNILHRIASQV--------------- 523
Query: 353 LQKAASQVAALDIGYKPGTSAIREKPPKVLFLLGADEGSI 392
AALD+GYKPG AIR+ PPK+LFLLGAD G I
Sbjct: 524 --------AALDLGYKPGVEAIRKNPPKMLFLLGADGGCI 555
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 93/141 (65%), Gaps = 3/141 (2%)
Query: 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQ 61
EEAD++LL+GTNPRFEAPLFNARIRK +L N+L VA IG VDL Y Y+HLG+S +++
Sbjct: 395 EEADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVALIGSPVDLTYRYDHLGDSPKILQD 454
Query: 62 LASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAG---VVG 118
+ASG H F + L AKKP++V+G+ L R DGAA+L V + K+ + VA V+
Sbjct: 455 IASGRHSFCEVLKDAKKPMVVLGSSALQRDDGAAILVAVSNMVQKIRVTTGVAAEWKVMN 514
Query: 119 SLADAEAMVALKDLLNKLGSE 139
L + VA DL K G E
Sbjct: 515 ILHRIASQVAALDLGYKPGVE 535
>sp|Q94511|NDUS1_DROME NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
OS=Drosophila melanogaster GN=ND75 PE=2 SV=3
Length = 731
Score = 199 bits (505), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 99/163 (60%), Positives = 123/163 (75%), Gaps = 2/163 (1%)
Query: 113 VAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEA 172
+AG+ G LAD EA VALKDLLN+LGSE + TE F GTD RANYLLN+ IAG EEA
Sbjct: 351 IAGISGQLADLEAQVALKDLLNRLGSEVVATEQGFI--AGGTDNRANYLLNSTIAGLEEA 408
Query: 173 DLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLAS 232
D +LL+GTNPR+EAPL N R+RK Y+ NEL +A IGPK+DL YD+E+LG A L+K + S
Sbjct: 409 DAVLLVGTNPRYEAPLVNTRLRKAYVHNELQIASIGPKIDLSYDHENLGADAALVKDVCS 468
Query: 233 GSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKV 275
G+HAFSK L AKKP I++GAD+L R+DGAA+ A V + K+
Sbjct: 469 GAHAFSKVLEGAKKPAIIIGADLLERADGAAIHATVAEYCKKL 511
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 81/106 (76%)
Query: 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQ 61
EEAD +LL+GTNPR+EAPL N R+RK Y+ NEL +A IGPK+DL YD+E+LG A L+K
Sbjct: 406 EEADAVLLVGTNPRYEAPLVNTRLRKAYVHNELQIASIGPKIDLSYDHENLGADAALVKD 465
Query: 62 LASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKV 107
+ SG+H FSK L AKKP I++GAD+L R+DGAA+ A V + K+
Sbjct: 466 VCSGAHAFSKVLEGAKKPAIIIGADLLERADGAAIHATVAEYCKKL 511
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 76/127 (59%), Gaps = 7/127 (5%)
Query: 268 VQQLAAKVTCESDH--LGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAA 325
+ + K+ DH LG A L+K + SG+HAFSK L AKKP I++GAD+L R+DGAA
Sbjct: 440 IASIGPKIDLSYDHENLGADAALVKDVCSGAHAFSKVLEGAKKPAIIIGADLLERADGAA 499
Query: 326 VLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLL 385
+ A V + K+ +W N+LQ A+QV ALD+GYK G + PKVLFLL
Sbjct: 500 IHATVAEYCKKLKKP-----NWNPFNVLQTNAAQVGALDVGYKAGAQTAVKAQPKVLFLL 554
Query: 386 GADEGSI 392
AD G +
Sbjct: 555 NADAGKV 561
>sp|Q43644|NDUS1_SOLTU NADH dehydrogenase [ubiquinone] iron-sulfur protein 1,
mitochondrial OS=Solanum tuberosum PE=2 SV=1
Length = 738
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 109/180 (60%), Gaps = 11/180 (6%)
Query: 97 LALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGT-- 154
LA+V ++ ++ E ++ GV G L+DAE+M+ALKDLLNK+GS +++ E G G
Sbjct: 359 LAIVAEVMHQIKPE-EIVGVAGKLSDAESMMALKDLLNKMGSNNIFCE------GNGMHP 411
Query: 155 --DLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVD 212
DLR+ Y++N I+G E+AD LL+GT PR EA + NARI K V Y+GP D
Sbjct: 412 NADLRSGYIMNTSISGLEKADAFLLVGTQPRVEAAMVNARIHKTVKATNAKVGYVGPAAD 471
Query: 213 LRYDYEHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLA 272
YD+EHLG + ++A G H FS L AK P+I+VGA + R D AV A V +A
Sbjct: 472 FNYDHEHLGTDPQTLVEIAEGRHPFSSALKNAKNPVIIVGAGVFDRDDKDAVFAAVDTIA 531
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 60/103 (58%)
Query: 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQ 61
E+AD LL+GT PR EA + NARI K V Y+GP D YD+EHLG + +
Sbjct: 429 EKADAFLLVGTQPRVEAAMVNARIHKTVKATNAKVGYVGPAADFNYDHEHLGTDPQTLVE 488
Query: 62 LASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLA 104
+A G HPFS L AK P+I+VGA + R D AV A V +A
Sbjct: 489 IAEGRHPFSSALKNAKNPVIIVGAGVFDRDDKDAVFAAVDTIA 531
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 272 AAKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQ 331
AA + +HLG + ++A G H FS L AK P+I+VGA + R D AV A V
Sbjct: 469 AADFNYDHEHLGTDPQTLVEIAEGRHPFSSALKNAKNPVIIVGAGVFDRDDKDAVFAAVD 528
Query: 332 QLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLLGADE 389
+A + V DW LN+L A+QVAALD+G P + E K ++L+GAD+
Sbjct: 529 TIAKN---NNVVRPDWNGLNVLLLNAAQVAALDLGLVPESDKCIES-AKFVYLMGADD 582
>sp|Q9FGI6|NDUS1_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 1,
mitochondrial OS=Arabidopsis thaliana GN=EMB1467 PE=1
SV=2
Length = 748
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 109/176 (61%), Gaps = 3/176 (1%)
Query: 97 LALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDL 156
LA+V + +V ++ GV G L+DAE+M+ LKD +N++GS++++ E G DL
Sbjct: 365 LAVVGDIIHQVK-PDEIVGVAGQLSDAESMMVLKDFVNRMGSDNVWCEGT--AAGVDADL 421
Query: 157 RANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYD 216
R +YL+N I+G E ADL LLIGT PR EA + NARI K + V Y+GP + YD
Sbjct: 422 RYSYLMNTSISGLENADLFLLIGTQPRVEAAMVNARICKTVRASNAKVGYVGPPAEFNYD 481
Query: 217 YEHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLA 272
+HLG D +K++A G H F L AK P I+VGA + +R+D A+L+ V+ +A
Sbjct: 482 CKHLGTGPDTLKEIAEGRHPFCTALKNAKNPAIIVGAGLFNRTDKNAILSSVESIA 537
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 64/103 (62%)
Query: 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQ 61
E ADL LLIGT PR EA + NARI K + V Y+GP + YD +HLG D +K+
Sbjct: 435 ENADLFLLIGTQPRVEAAMVNARICKTVRASNAKVGYVGPPAEFNYDCKHLGTGPDTLKE 494
Query: 62 LASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLA 104
+A G HPF L AK P I+VGA + +R+D A+L+ V+ +A
Sbjct: 495 IAEGRHPFCTALKNAKNPAIIVGAGLFNRTDKNAILSSVESIA 537
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 273 AKVTCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQ 332
A+ + HLG D +K++A G H F L AK P I+VGA + +R+D A+L+ V+
Sbjct: 476 AEFNYDCKHLGTGPDTLKEIAEGRHPFCTALKNAKNPAIIVGAGLFNRTDKNAILSSVES 535
Query: 333 LAAKVTCESDVPCDWKVLNI 352
+A + V DW LN
Sbjct: 536 IAQA---NNVVRPDWNGLNF 552
>sp|O21241|NDUS1_RECAM NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Reclinomonas
americana GN=NAD11 PE=3 SV=1
Length = 691
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 102/170 (60%), Gaps = 11/170 (6%)
Query: 113 VAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEG-----------AGTDLRANYL 161
+ GVVG+L D E+++ K+LLNKLGS +Y E + P+ D R NY+
Sbjct: 308 IVGVVGNLMDVESILLFKELLNKLGSSKIYLESSTPILQLNDDEKEDQILNNADFRNNYI 367
Query: 162 LNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLG 221
N +A EE+DL LLIGTN R EAPL N RIRK YL V +GP +L Y+ E+LG
Sbjct: 368 SNTPLAKIEESDLCLLIGTNIRLEAPLLNTRIRKRYLQGNYSVYSVGPTNNLTYNTENLG 427
Query: 222 ESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQL 271
+ +++ G H F KKL +KKPLI++G +L R+DG +++ LV+ L
Sbjct: 428 NDISTLLEISEGRHPFCKKLMKSKKPLIIIGTHVLQRTDGTSIIELVKTL 477
Score = 111 bits (278), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 82/143 (57%), Gaps = 2/143 (1%)
Query: 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQ 61
EE+DL LLIGTN R EAPL N RIRK YL V +GP +L Y+ E+LG + +
Sbjct: 376 EESDLCLLIGTNIRLEAPLLNTRIRKRYLQGNYSVYSVGPTNNLTYNTENLGNDISTLLE 435
Query: 62 LASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLA 121
++ G HPF KKL +KKPLI++G +L R+DG +++ LV+ L ++ L
Sbjct: 436 ISEGRHPFCKKLMKSKKPLIIIGTHVLQRTDGTSIIELVKTLFKYTQIKTSNWNGFNILH 495
Query: 122 DAEAMVALKDLLNKLGSEDLYTE 144
+ + V DL +GS Y+E
Sbjct: 496 TSASSVGALDL--GIGSTKRYSE 516
>sp|P24918|NDUS1_NEUCR NADH-ubiquinone oxidoreductase 78 kDa subunit, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-78 PE=1 SV=2
Length = 744
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 128/226 (56%), Gaps = 19/226 (8%)
Query: 111 SDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAF---PLEGAGTDLRANYLLNNKIA 167
++ + G L + E++VA+KDL N+LGSE+L + PL G D+R+NY+ N+ I
Sbjct: 343 NEFKAIAGQLTEVESLVAMKDLANRLGSENLALDMPSGHKPL-AHGVDVRSNYIFNSSIV 401
Query: 168 GAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLI 227
G E AD+ILL+GTNPR EA + NARIRK +L ++L++ +G D +++EHLG +
Sbjct: 402 GIESADVILLVGTNPRHEAAVLNARIRKQWLRSDLEIGVVGQTWDSTFEFEHLGTDHAAL 461
Query: 228 KQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDHLGESA- 286
++ G F KKL +AK P+I+VG+ + D A V + + S+ L E
Sbjct: 462 QKALEGD--FGKKLQSAKNPMIIVGSGVTDHGDANAFYETVGKFVD--SNASNFLTEEWN 517
Query: 287 --DLIKQLASGSHAF-------SKKLAAAKKPLI-VVGADMLSRSD 322
+++++ AS AF S ++A K + ++GAD + +D
Sbjct: 518 GYNVLQRAASRVGAFEVGFTVPSAEIAQTKPKFVWLLGADEFNEAD 563
Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Query: 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQ 61
E AD+ILL+GTNPR EA + NARIRK +L ++L++ +G D +++EHLG +++
Sbjct: 404 ESADVILLVGTNPRHEAAVLNARIRKQWLRSDLEIGVVGQTWDSTFEFEHLGTDHAALQK 463
Query: 62 LASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQL 103
G F KKL +AK P+I+VG+ + D A V +
Sbjct: 464 ALEGD--FGKKLQSAKNPMIIVGSGVTDHGDANAFYETVGKF 503
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 276 TCESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAA 335
T E +HLG +++ G F KKL +AK P+I+VG+ + D A V +
Sbjct: 448 TFEFEHLGTDHAALQKALEGD--FGKKLQSAKNPMIIVGSGVTDHGDANAFYETVGKFVD 505
Query: 336 KVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLLGADE 389
+ + +W N+LQ+AAS+V A ++G+ ++ I + PK ++LLGADE
Sbjct: 506 S-NASNFLTEEWNGYNVLQRAASRVGAFEVGFTVPSAEIAQTKPKFVWLLGADE 558
>sp|Q4UK22|NUOG_RICFE NADH-quinone oxidoreductase subunit G OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=nuoG PE=3 SV=1
Length = 671
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 98/168 (58%), Gaps = 2/168 (1%)
Query: 113 VAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEA 172
+A + GSL EAM LK LL KLGS + Y+ F + T R NYL N IAG E+A
Sbjct: 307 IAAIAGSLVSVEAMFMLKTLLQKLGSNN-YSVNQFDYK-FDTTQRGNYLFNTTIAGVEKA 364
Query: 173 DLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLAS 232
DL LLIG N R AP+ N+RI + L VA IG + Y + LG +I++LA
Sbjct: 365 DLCLLIGANLRQIAPVLNSRIGQRVRAGSLKVARIGEGHNQTYRIQDLGSDIKIIEELAI 424
Query: 233 GSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 280
G+H F+K L AAK P+I+VG + +R DG A+L+L+ ++ A+ D
Sbjct: 425 GTHEFTKALKAAKYPMIIVGDGVYARDDGYAILSLIHKIVAEYNIMRD 472
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 67/111 (60%)
Query: 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQ 61
E+ADL LLIG N R AP+ N+RI + L VA IG + Y + LG +I++
Sbjct: 362 EKADLCLLIGANLRQIAPVLNSRIGQRVRAGSLKVARIGEGHNQTYRIQDLGSDIKIIEE 421
Query: 62 LASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 112
LA G+H F+K L AAK P+I+VG + +R DG A+L+L+ ++ A+ D
Sbjct: 422 LAIGTHEFTKALKAAKYPMIIVGDGVYARDDGYAILSLIHKIVAEYNIMRD 472
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 67/108 (62%), Gaps = 6/108 (5%)
Query: 282 LGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 341
LG +I++LA G+H F+K L AAK P+I+VG + +R DG A+L+L+ ++ A+
Sbjct: 412 LGSDIKIIEELAIGTHEFTKALKAAKYPMIIVGDGVYARDDGYAILSLIHKIVAEYNIMR 471
Query: 342 DVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLLGADE 389
D D++ N+L AS V LDIG+ + I+ + ++ +LLGADE
Sbjct: 472 D---DFQGFNMLHNHASIVGGLDIGF---NTPIKLEELELTYLLGADE 513
>sp|Q92G92|NUOG_RICCN NADH-quinone oxidoreductase subunit G OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=nuoG PE=3 SV=2
Length = 671
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 98/169 (57%), Gaps = 4/169 (2%)
Query: 113 VAGVVGSLADAEAMVALKDLLNKLGSEDL-YTEYAFPLEGAGTDLRANYLLNNKIAGAEE 171
+ + GSL+ EAM LK LL KLGS + ++ + L+ T R NYL N IAG E+
Sbjct: 307 IVAIAGSLSSVEAMFMLKTLLQKLGSNNYSVNQFDYKLD---TMQRGNYLFNTTIAGIEK 363
Query: 172 ADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLA 231
ADL LLIG NPR AP+ N+RI + L VA IG + Y + LG +I++LA
Sbjct: 364 ADLCLLIGANPRQIAPVLNSRIGMRVRADSLKVARIGGGHNQTYKIQDLGSDIKIIEELA 423
Query: 232 SGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 280
G+H F+K L AAK +I+VG + +R DG A+L+L+ ++ + D
Sbjct: 424 IGTHEFTKALKAAKYLMIIVGDGVYARDDGYAILSLIHKIVTEYNIMRD 472
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 66/111 (59%)
Query: 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQ 61
E+ADL LLIG NPR AP+ N+RI + L VA IG + Y + LG +I++
Sbjct: 362 EKADLCLLIGANPRQIAPVLNSRIGMRVRADSLKVARIGGGHNQTYKIQDLGSDIKIIEE 421
Query: 62 LASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 112
LA G+H F+K L AAK +I+VG + +R DG A+L+L+ ++ + D
Sbjct: 422 LAIGTHEFTKALKAAKYLMIIVGDGVYARDDGYAILSLIHKIVTEYNIMRD 472
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 282 LGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 341
LG +I++LA G+H F+K L AAK +I+VG + +R DG A+L+L+ ++ +
Sbjct: 412 LGSDIKIIEELAIGTHEFTKALKAAKYLMIIVGDGVYARDDGYAILSLIHKIVTEYNIMR 471
Query: 342 DVPCDWKVLNILQKAASQVAALDIGY 367
D DWK NIL AS V LDIG+
Sbjct: 472 D---DWKGFNILHNHASIVGGLDIGF 494
>sp|Q9ZCF6|NUOG_RICPR NADH-quinone oxidoreductase subunit G OS=Rickettsia prowazekii
(strain Madrid E) GN=nuoG PE=3 SV=1
Length = 675
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Query: 113 VAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEA 172
+A + GS+ EAM LK LL KLGS + YT F + T R NYL N I G E+A
Sbjct: 307 IAAIAGSIVSVEAMFMLKILLQKLGSNN-YTVNQFNYK-IDTSERGNYLFNTTIVGVEKA 364
Query: 173 DLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLAS 232
DL LLIG N R AP+ N+RI + L V IG + Y + LG +I+ LA
Sbjct: 365 DLCLLIGANTRQIAPILNSRIGRRVRIGALKVVRIGIGHNQTYKIQDLGNDIKIIEDLAI 424
Query: 233 GSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 280
G+H ++K AK P+I+VG + R DG AVL+L+ ++ K D
Sbjct: 425 GTHEYTKAFKEAKYPMIIVGDGVYGRDDGYAVLSLIHKVVDKYNMMRD 472
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%)
Query: 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQ 61
E+ADL LLIG N R AP+ N+RI + L V IG + Y + LG +I+
Sbjct: 362 EKADLCLLIGANTRQIAPILNSRIGRRVRIGALKVVRIGIGHNQTYKIQDLGNDIKIIED 421
Query: 62 LASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 112
LA G+H ++K AK P+I+VG + R DG AVL+L+ ++ K D
Sbjct: 422 LAIGTHEYTKAFKEAKYPMIIVGDGVYGRDDGYAVLSLIHKVVDKYNMMRD 472
>sp|Q1RKD2|NUOG_RICBR NADH-quinone oxidoreductase subunit G OS=Rickettsia bellii (strain
RML369-C) GN=nuoG PE=3 SV=1
Length = 681
Score = 115 bits (288), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 108/204 (52%), Gaps = 6/204 (2%)
Query: 78 KPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLG 137
+P I ++S S A+ A+ ++ K + G+LA EAM LK L K+G
Sbjct: 274 QPYIRKNGKLVSASWDEALKAIADKI--KSIKPEKITAFAGTLASVEAMFMLKTFLQKIG 331
Query: 138 SEDL-YTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKG 196
+ ++ + L+ T R NYL N IAG E+ADL LLIG NPR AP+ N+RI
Sbjct: 332 CNNYNVNQFDYKLD---TTQRGNYLFNTTIAGLEKADLCLLIGANPRQIAPVLNSRIGGR 388
Query: 197 YLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADML 256
L VA IG + Y + LG ++++LA H F+++L AAK P+I+VG +
Sbjct: 389 VRAGSLKVARIGEGHNQTYKIQDLGSDLKILEELALDEHKFAEELKAAKYPIIIVGDGVY 448
Query: 257 SRSDGAAVLALVQQLAAKVTCESD 280
R+DG A+L+L+ ++ K D
Sbjct: 449 GRNDGHAILSLIHKIVDKYNIMRD 472
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 72/131 (54%)
Query: 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQ 61
E+ADL LLIG NPR AP+ N+RI L VA IG + Y + LG ++++
Sbjct: 362 EKADLCLLIGANPRQIAPVLNSRIGGRVRAGSLKVARIGEGHNQTYKIQDLGSDLKILEE 421
Query: 62 LASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLA 121
LA H F+++L AAK P+I+VG + R+DG A+L+L+ ++ K D L
Sbjct: 422 LALDEHKFAEELKAAKYPIIIVGDGVYGRNDGHAILSLIHKIVDKYNIMRDDWKGFNILH 481
Query: 122 DAEAMVALKDL 132
+ +MV D+
Sbjct: 482 NHASMVGGFDI 492
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 5/108 (4%)
Query: 282 LGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 341
LG ++++LA H F+++L AAK P+I+VG + R+DG A+L+L+ ++ K
Sbjct: 412 LGSDLKILEELALDEHKFAEELKAAKYPIIIVGDGVYGRNDGHAILSLIHKIVDKYNIMR 471
Query: 342 DVPCDWKVLNILQKAASQVAALDIGYKPGTSAIREKPPKVLFLLGADE 389
D DWK NIL AS V DIG+ TS + + ++ +LLGADE
Sbjct: 472 D---DWKGFNILHNHASMVGGFDIGFD--TSLGKLEDIELAYLLGADE 514
>sp|Q68VV2|NUOG_RICTY NADH-quinone oxidoreductase subunit G OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=nuoG PE=3 SV=1
Length = 675
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
Query: 113 VAGVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEA 172
+A + GS+ EAM LK LL KLGS + YT F + T R NYL N I G E+A
Sbjct: 307 IAAIAGSIVSVEAMFMLKILLQKLGSNN-YTVNQFNYK-IDTSERGNYLFNTTIVGVEKA 364
Query: 173 DLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLAS 232
DL LLIG N R AP+ N+RI + L V IG + Y LG +I+ LA
Sbjct: 365 DLCLLIGANIRQIAPILNSRIGRRVRIGALKVVRIGIGHNQTYKIHDLGNDIKIIEDLAV 424
Query: 233 GSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESD 280
G+H ++K AK P+I+VG + R DG A+L+L+ ++ K D
Sbjct: 425 GTHEYTKAFKEAKYPMIIVGDGVYGRDDGYALLSLIHKVVDKYNMMRD 472
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQ 61
E+ADL LLIG N R AP+ N+RI + L V IG + Y LG +I+
Sbjct: 362 EKADLCLLIGANIRQIAPILNSRIGRRVRIGALKVVRIGIGHNQTYKIHDLGNDIKIIED 421
Query: 62 LASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLA 121
LA G+H ++K AK P+I+VG + R DG A+L+L+ ++ K D
Sbjct: 422 LAVGTHEYTKAFKEAKYPMIIVGDGVYGRDDGYALLSLIHKVVDKYNMMRD--------- 472
Query: 122 DAEAMVALKDLLNKLGSEDLYTEYAFPLEG 151
D + L + + +G D+ A EG
Sbjct: 473 DWQGFNILHNHASIVGGLDIGFNTAIKFEG 502
>sp|P29915|NQO3_PARDE NADH-quinone oxidoreductase chain 3 OS=Paracoccus denitrificans
GN=nqo3 PE=1 SV=4
Length = 673
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 94/173 (54%), Gaps = 11/173 (6%)
Query: 102 QLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGS--EDLYTEYAFPLEGAGTDLRAN 159
+ AA+ +AG++G L AEA +LK L+ LG E P AG R+
Sbjct: 305 EAAARAMKGKKIAGLIGDLVPAEAAFSLKQLVEGLGGKVECRVDGARLP---AGN--RSA 359
Query: 160 YLLNNKIAGAEEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEH 219
Y+ +I ++A++I LIGTNPR EAP+ NARIRK + + V +G VDL YDY H
Sbjct: 360 YVGTARIEDIDDAEMIQLIGTNPRDEAPVLNARIRKAW-SKGAKVGLVGEPVDLTYDYAH 418
Query: 220 LGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSRSDGAAVLALVQQLA 272
+G ++ L+S + K A+ +++VG ++R DG AVLA +LA
Sbjct: 419 VGTDRAALESLSSREISDETK---ARPSIVIVGQGAIARRDGEAVLAHAMKLA 468
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 4/103 (3%)
Query: 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQ 61
++A++I LIGTNPR EAP+ NARIRK + + V +G VDL YDY H+G ++
Sbjct: 370 DDAEMIQLIGTNPRDEAPVLNARIRKAW-SKGAKVGLVGEPVDLTYDYAHVGTDRAALES 428
Query: 62 LASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLA 104
L+S K A+ +++VG ++R DG AVLA +LA
Sbjct: 429 LSSREISDETK---ARPSIVIVGQGAIARRDGEAVLAHAMKLA 468
>sp|Q2LCP5|NDUS1_DICCI NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Dictyostelium
citrinum GN=nad11 PE=3 SV=2
Length = 688
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 86/148 (58%), Gaps = 5/148 (3%)
Query: 116 VVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLI 175
++GS ++ + K+L+N+LGS++ TE + D R NY+ +N + ++ DL+
Sbjct: 321 IIGSKINSTNLRIYKELMNRLGSKNYITENGLLFKKFNYDFRENYINSNDLYNVDQNDLV 380
Query: 176 LLIGTNPRFEAPLFNARIRK-GYLTNELD----VAYIGPKVDLRYDYEHLGESADLIKQL 230
LL G N R E+PL N ++R + +E++ + IG K D + + E+LG + + + ++
Sbjct: 381 LLCGINLRVESPLLNIKLRNINFGDDEIETRKKIGIIGNKFDWKQESEYLGSTVNSMLKV 440
Query: 231 ASGSHAFSKKLAAAKKPLIVVGADMLSR 258
G + +++ +K PLI+VG+ +LSR
Sbjct: 441 FEGRFPYCQQIKKSKAPLILVGSSLLSR 468
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 58/95 (61%), Gaps = 5/95 (5%)
Query: 1 AEEADLILLIGTNPRFEAPLFNARIRK-GYLTNELD----VAYIGPKVDLRYDYEHLGES 55
++ DL+LL G N R E+PL N ++R + +E++ + IG K D + + E+LG +
Sbjct: 374 VDQNDLVLLCGINLRVESPLLNIKLRNINFGDDEIETRKKIGIIGNKFDWKQESEYLGST 433
Query: 56 ADLIKQLASGSHPFSKKLSAAKKPLIVVGADMLSR 90
+ + ++ G P+ +++ +K PLI+VG+ +LSR
Sbjct: 434 VNSMLKVFEGRFPYCQQIKKSKAPLILVGSSLLSR 468
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 278 ESDHLGESADLIKQLASGSHAFSKKLAAAKKPLIVVGADMLSR 320
ES++LG + + + ++ G + +++ +K PLI+VG+ +LSR
Sbjct: 426 ESEYLGSTVNSMLKVFEGRFPYCQQIKKSKAPLILVGSSLLSR 468
>sp|Q34312|NDUS1_DICDI NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Dictyostelium
discoideum GN=nad11 PE=3 SV=1
Length = 688
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 87/148 (58%), Gaps = 5/148 (3%)
Query: 116 VVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADLI 175
++GS ++ + K+L+N+LGS++ TE + DLR NY+ +N + ++ DL+
Sbjct: 321 IIGSKINSTNLRIYKELMNRLGSKNYITENGLMFKKFNYDLRENYINSNDLYNVDKNDLV 380
Query: 176 LLIGTNPRFEAPLFNARIRK-GYLTNELD----VAYIGPKVDLRYDYEHLGESADLIKQL 230
LL G N R E+PL N ++R + +E++ + IG K D +++ E++G + + + +L
Sbjct: 381 LLCGINLRVESPLLNIKLRNVNFGDDEIESVKKIGIIGNKFDWKHESEYIGATLNSMLKL 440
Query: 231 ASGSHAFSKKLAAAKKPLIVVGADMLSR 258
G + +++ +K PLI+VG +L+R
Sbjct: 441 FEGRLPYCQQIKKSKAPLIIVGPSLLTR 468
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 58/95 (61%), Gaps = 5/95 (5%)
Query: 1 AEEADLILLIGTNPRFEAPLFNARIRK-GYLTNELD----VAYIGPKVDLRYDYEHLGES 55
++ DL+LL G N R E+PL N ++R + +E++ + IG K D +++ E++G +
Sbjct: 374 VDKNDLVLLCGINLRVESPLLNIKLRNVNFGDDEIESVKKIGIIGNKFDWKHESEYIGAT 433
Query: 56 ADLIKQLASGSHPFSKKLSAAKKPLIVVGADMLSR 90
+ + +L G P+ +++ +K PLI+VG +L+R
Sbjct: 434 LNSMLKLFEGRLPYCQQIKKSKAPLIIVGPSLLTR 468
>sp|P86203|NDUS1_MESAU NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
(Fragments) OS=Mesocricetus auratus GN=NDUFS1 PE=1 SV=1
Length = 190
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 316 DMLSRSDGAAVLALVQQLAAKVTCESDVPCDWKVLNILQKAASQVAALDIGYKPGTSAIR 375
D LSR + A V + + V D+ + L K ASQVAALD+GYKPG AIR
Sbjct: 63 DALSRFEAPLFNARVALIGSPV----DLTYRYDHLGDSPKIASQVAALDLGYKPGVEAIR 118
Query: 376 EKPPKVLFLLGADEGSI 392
+ PPK+LFLLGAD G I
Sbjct: 119 KNPPKLLFLLGADGGCI 135
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 15/76 (19%)
Query: 183 RFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHAFSKKLA 242
RFEAPLFNAR VA IG VDL Y Y+HLG+S + Q+A+ + +
Sbjct: 67 RFEAPLFNAR-----------VALIGSPVDLTYRYDHLGDSPKIASQVAALDLGYKPGVE 115
Query: 243 AAKKP----LIVVGAD 254
A +K L ++GAD
Sbjct: 116 AIRKNPPKLLFLLGAD 131
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 15/76 (19%)
Query: 15 RFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGSHPFSKKLS 74
RFEAPLFNAR VA IG VDL Y Y+HLG+S + Q+A+ + +
Sbjct: 67 RFEAPLFNAR-----------VALIGSPVDLTYRYDHLGDSPKIASQVAALDLGYKPGVE 115
Query: 75 AAKKP----LIVVGAD 86
A +K L ++GAD
Sbjct: 116 AIRKNPPKLLFLLGAD 131
>sp|Q37373|NDUS1_ACACA NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Acanthamoeba
castellanii GN=NAD11 PE=3 SV=1
Length = 675
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 11/167 (6%)
Query: 115 GVVGSLADAEAMVALKDLLNKLGSEDLYTEYAFPLEGAGTDLRANYLLNNKIAGAEEADL 174
G +G D E + K L GS F + DL A Y N + +E D
Sbjct: 317 GYIGDYLDLETIYTFKKFLLLNGSN------FFLPSSSYNDLTALYSFNTPLTRLDEGDF 370
Query: 175 ILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGS 234
+L+ N R E P+ N+RI++ L V +G + Y +H+ S+ + + GS
Sbjct: 371 CILLDVNLRVELPIVNSRIKQLVSKKMLPVFVLGFYSNFNYFVKHISNSSKTLLHVLEGS 430
Query: 235 HAFSKKLAA--AKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 279
H S K++ + KP+ ++G D S G+ ++ L V C++
Sbjct: 431 HWLSAKISKKFSSKPIFLIG-DSSSLLKGSLIVPLFN--FTNVICDN 474
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 2 EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQ 61
+E D +L+ N R E P+ N+RI++ L V +G + Y +H+ S+ +
Sbjct: 366 DEGDFCILLDVNLRVELPIVNSRIKQLVSKKMLPVFVLGFYSNFNYFVKHISNSSKTLLH 425
Query: 62 LASGSHPFSKKLSA--AKKPLIVVGADMLSRSDGAAVLALVQQLAAKVTCES 111
+ GSH S K+S + KP+ ++G D S G+ ++ L V C++
Sbjct: 426 VLEGSHWLSAKISKKFSSKPIFLIG-DSSSLLKGSLIVPLFN--FTNVICDN 474
>sp|Q53209|FIXB_RHISN Protein FixB OS=Rhizobium sp. (strain NGR234) GN=fixB PE=3 SV=1
Length = 369
Score = 36.6 bits (83), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 45/154 (29%)
Query: 113 VAGVVGSLADAEAMVALKDLLNKLG-----SEDLYTEYAFP----LEGAGTDLRANYLLN 163
VAG +G L++AE ++ +KDL +G S L + P + G +R +
Sbjct: 244 VAGGLG-LSNAENLLLIKDLALTIGGDYGCSRPLVQKGWMPADRQIGQTGKTIRPKLYIA 302
Query: 164 NKIAGA-------EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYD 216
I+GA E ADLI+ I T+P AP+F D
Sbjct: 303 AGISGAVQHRVGVEGADLIVAINTDP--HAPIF--------------------------D 334
Query: 217 YEHLGESADLIKQLASGSHAFSKKLAAAKKPLIV 250
+ H+G D + L + + AF+K+LA A + +V
Sbjct: 335 FAHVGVVTDAVSFLPALTEAFTKRLAPANRLRVV 368
>sp|Q0TTA5|ASSY_CLOP1 Argininosuccinate synthase OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=argG PE=3 SV=1
Length = 403
Score = 35.8 bits (81), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 87 MLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTE-- 144
+L+ S G ++ L CE V VVG++ ++ +V LK+ K G+ +Y E
Sbjct: 8 ILAYSGGLDTSIIIPWLKENYGCE--VIAVVGNVGQSDELVGLKEKAIKTGASKIYIEDL 65
Query: 145 -------YAFPLEGAGTDLRANYLLNNKIA 167
Y FP AG YLL A
Sbjct: 66 TKEFVEDYIFPTIQAGAKYEGKYLLGTSFA 95
>sp|Q8XMJ7|ASSY_CLOPE Argininosuccinate synthase OS=Clostridium perfringens (strain 13 /
Type A) GN=argG PE=3 SV=1
Length = 405
Score = 35.8 bits (81), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 87 MLSRSDGAAVLALVQQLAAKVTCESDVAGVVGSLADAEAMVALKDLLNKLGSEDLYTE-- 144
+L+ S G ++ L CE V VVG++ ++ +V LK+ K G+ +Y E
Sbjct: 10 ILAYSGGLDTSIIIPWLKENYGCE--VIAVVGNVGQSDELVGLKEKAIKTGASKIYIEDL 67
Query: 145 -------YAFPLEGAGTDLRANYLLNNKIA 167
Y FP AG YLL A
Sbjct: 68 TKEFVEDYIFPTIQAGAKYEGKYLLGTSFA 97
>sp|P09819|FIXB_RHIME Protein FixB OS=Rhizobium meliloti (strain 1021) GN=fixB PE=3 SV=1
Length = 353
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 78/201 (38%), Gaps = 62/201 (30%)
Query: 75 AAKKPLIVVGADMLSRSDGAAVL----ALVQQLAAKVTCE-SDVAGVVGSLADAEAMVA- 128
A +P ++ ++R G+ + L +++A KV SD + +LA A+ +VA
Sbjct: 171 ATVRPSVMATPQRVNRPTGSIIRHDLKMLEEEIATKVLAFFSDCDSTIANLAYADVVVAG 230
Query: 129 ------------LKDLLNKLG-----SEDLYTEYAFPLE----GAGTDLRANYLLNNKIA 167
LKDL LG S L + P + G +R + I+
Sbjct: 231 GLGLGAVQNLQLLKDLARTLGGDFGCSRPLVQKGWMPFDRQIGQTGNTIRPKLYIAAGIS 290
Query: 168 GA-------EEADLILLIGTNPRFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHL 220
GA E +DLI+ I T+P AP+F D+ HL
Sbjct: 291 GAVQHRVGVEGSDLIVAINTDP--NAPIF--------------------------DFAHL 322
Query: 221 GESADLIKQLASGSHAFSKKL 241
G AD I L + + F+K+L
Sbjct: 323 GVVADAISFLPALTEVFTKRL 343
>sp|P65877|PTHP_NEIMB Phosphocarrier protein HPr OS=Neisseria meningitidis serogroup B
(strain MC58) GN=ptsH PE=3 SV=1
Length = 89
Score = 32.3 bits (72), Expect = 5.7, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 52 LGESADLIKQL---ASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVT 108
L +S ++I +L A S+ F++ S K + V D SR +G +++ L+ AAK T
Sbjct: 2 LKQSIEIINKLGLHARASNKFTQTASQFKSEVWVTKND--SRVNGKSIMGLMMLAAAKGT 59
Query: 109 C---ESDVAGVVGSLADAEAMVALKDLLN 134
E+D A +AEAM AL DL+N
Sbjct: 60 VIELETDGAD------EAEAMRALTDLIN 82
>sp|P65876|PTHP_NEIMA Phosphocarrier protein HPr OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=ptsH PE=3 SV=1
Length = 89
Score = 32.3 bits (72), Expect = 5.7, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 52 LGESADLIKQL---ASGSHPFSKKLSAAKKPLIVVGADMLSRSDGAAVLALVQQLAAKVT 108
L +S ++I +L A S+ F++ S K + V D SR +G +++ L+ AAK T
Sbjct: 2 LKQSIEIINKLGLHARASNKFTQTASQFKSEVWVTKND--SRVNGKSIMGLMMLAAAKGT 59
Query: 109 C---ESDVAGVVGSLADAEAMVALKDLLN 134
E+D A +AEAM AL DL+N
Sbjct: 60 VIELETDGAD------EAEAMRALTDLIN 82
>sp|Q9HSB8|Y309_HALSA Uncharacterized aldolase VNG_0309C OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=VNG_0309C
PE=3 SV=1
Length = 265
Score = 32.3 bits (72), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 15 RFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGS-HPFSKKL 73
R P+ +G +E D A +G V L E +G AD+IK SGS F + +
Sbjct: 134 RLGVPVLAMAYARGPGVDEHDAANLGHAVRL---AEEVG--ADVIKTAYSGSTESFQRVV 188
Query: 74 SAAKKPLIVVGAD 86
A KP+I+ G D
Sbjct: 189 DATAKPVIIAGGD 201
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 183 RFEAPLFNARIRKGYLTNELDVAYIGPKVDLRYDYEHLGESADLIKQLASGS-HAFSKKL 241
R P+ +G +E D A +G V L E +G AD+IK SGS +F + +
Sbjct: 134 RLGVPVLAMAYARGPGVDEHDAANLGHAVRL---AEEVG--ADVIKTAYSGSTESFQRVV 188
Query: 242 AAAKKPLIVVGAD 254
A KP+I+ G D
Sbjct: 189 DATAKPVIIAGGD 201
>sp|Q87EQ7|TPIS_XYLFT Triosephosphate isomerase OS=Xylella fastidiosa (strain Temecula1 /
ATCC 700964) GN=tpiA PE=3 SV=1
Length = 249
Score = 32.0 bits (71), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 16/86 (18%)
Query: 27 KGYLTNELD---VAYIGPKVDL-----RYDYEHLGESADLIKQLASGSHPFSKKLSAAKK 78
KG T E+ VA +G L R +Y H E ++L+ + F+ LSA +
Sbjct: 70 KGAYTGEVSAAMVADVGAHYTLVGHSERREYHH--EDSELVAR------KFAAALSAGLR 121
Query: 79 PLIVVGADMLSRSDGAAVLALVQQLA 104
P++ VG + R G A +A+ QLA
Sbjct: 122 PILCVGESLPQREAGQAEVAIAMQLA 147
>sp|B2I782|TPIS_XYLF2 Triosephosphate isomerase OS=Xylella fastidiosa (strain M23)
GN=tpiA PE=3 SV=1
Length = 249
Score = 32.0 bits (71), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 16/86 (18%)
Query: 27 KGYLTNELD---VAYIGPKVDL-----RYDYEHLGESADLIKQLASGSHPFSKKLSAAKK 78
KG T E+ VA +G L R +Y H E ++L+ + F+ LSA +
Sbjct: 70 KGAYTGEVSAAMVADVGAHYTLVGHSERREYHH--EDSELVAR------KFAAALSAGLR 121
Query: 79 PLIVVGADMLSRSDGAAVLALVQQLA 104
P++ VG + R G A +A+ QLA
Sbjct: 122 PILCVGESLPQREAGQAEVAIAMQLA 147
>sp|Q9PGJ7|TPIS_XYLFA Triosephosphate isomerase OS=Xylella fastidiosa (strain 9a5c)
GN=tpiA PE=3 SV=1
Length = 249
Score = 32.0 bits (71), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 16/86 (18%)
Query: 27 KGYLTNELD---VAYIGPKVDL-----RYDYEHLGESADLIKQLASGSHPFSKKLSAAKK 78
KG T E+ VA +G L R +Y H E ++L+ + F+ LSA +
Sbjct: 70 KGAYTGEVSAAMVADVGAHYTLVGHSERREYHH--EDSELVAR------KFAAALSAGLR 121
Query: 79 PLIVVGADMLSRSDGAAVLALVQQLA 104
P++ VG + R G A +A+ QLA
Sbjct: 122 PILCVGESLPQREAGQAEVAIAMQLA 147
>sp|B0U1W3|TPIS_XYLFM Triosephosphate isomerase OS=Xylella fastidiosa (strain M12)
GN=tpiA PE=3 SV=1
Length = 249
Score = 31.6 bits (70), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 16/86 (18%)
Query: 27 KGYLTNELD---VAYIGPKVDL-----RYDYEHLGESADLIKQLASGSHPFSKKLSAAKK 78
KG T E+ VA +G L R +Y H E ++L+ + F+ LSA +
Sbjct: 70 KGAYTGEVSAAMVADVGAHYTLVGHSERREYHH--EDSELVAR------KFAAALSAGLR 121
Query: 79 PLIVVGADMLSRSDGAAVLALVQQLA 104
P++ VG + R G A +A+ QLA
Sbjct: 122 PILCVGESLPQREAGQAEVAIAMQLA 147
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,010,681
Number of Sequences: 539616
Number of extensions: 5470070
Number of successful extensions: 17050
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 16911
Number of HSP's gapped (non-prelim): 125
length of query: 393
length of database: 191,569,459
effective HSP length: 119
effective length of query: 274
effective length of database: 127,355,155
effective search space: 34895312470
effective search space used: 34895312470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)